Query psy15087
Match_columns 341
No_of_seqs 412 out of 2542
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:10:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 4E-43 8.8E-48 345.8 20.3 197 140-339 478-684 (802)
2 KOG0730|consensus 100.0 3.6E-43 7.8E-48 350.0 17.4 179 158-339 427-607 (693)
3 COG1222 RPT1 ATP-dependent 26S 100.0 8.1E-43 1.8E-47 327.2 17.1 179 158-339 144-327 (406)
4 KOG0737|consensus 100.0 1.3E-42 2.8E-47 327.2 18.5 219 122-340 44-267 (386)
5 KOG0738|consensus 100.0 1.6E-40 3.4E-45 313.8 13.8 186 153-340 200-388 (491)
6 KOG0736|consensus 100.0 1.7E-39 3.8E-44 326.8 19.0 184 153-338 660-847 (953)
7 KOG0739|consensus 100.0 6E-40 1.3E-44 300.9 14.2 185 153-340 121-305 (439)
8 KOG0734|consensus 100.0 6.2E-37 1.3E-41 298.3 15.8 183 153-339 291-476 (752)
9 KOG0733|consensus 100.0 7.8E-37 1.7E-41 301.5 16.1 179 160-340 185-367 (802)
10 KOG0727|consensus 100.0 9.4E-36 2E-40 268.2 18.0 181 158-341 148-333 (408)
11 KOG0729|consensus 100.0 2.1E-35 4.6E-40 267.6 13.4 179 158-340 170-354 (435)
12 KOG0735|consensus 100.0 1.9E-34 4.1E-39 288.4 18.7 213 121-339 617-840 (952)
13 COG0464 SpoVK ATPases of the A 100.0 1.9E-33 4E-38 284.2 21.0 197 140-339 211-415 (494)
14 COG1223 Predicted ATPase (AAA+ 100.0 4.5E-34 9.7E-39 258.1 12.2 173 160-339 116-289 (368)
15 KOG0731|consensus 100.0 1.4E-33 2.9E-38 288.7 16.9 179 158-340 304-488 (774)
16 KOG0652|consensus 100.0 1.3E-33 2.8E-38 255.4 14.3 191 145-340 152-348 (424)
17 KOG0726|consensus 100.0 1.6E-33 3.4E-38 258.1 14.3 179 158-339 178-361 (440)
18 TIGR01243 CDC48 AAA family ATP 100.0 4.7E-32 1E-36 285.6 22.1 241 97-340 364-628 (733)
19 KOG0728|consensus 100.0 1.6E-32 3.5E-37 247.1 14.7 177 159-339 141-323 (404)
20 KOG0740|consensus 100.0 6.8E-33 1.5E-37 269.2 12.0 185 154-340 142-326 (428)
21 PTZ00454 26S protease regulato 100.0 3.7E-31 8E-36 259.6 17.9 180 157-339 137-321 (398)
22 COG0465 HflB ATP-dependent Zn 100.0 2E-31 4.3E-36 268.5 14.8 177 159-339 144-325 (596)
23 TIGR03689 pup_AAA proteasome A 100.0 1.2E-30 2.7E-35 261.3 16.3 184 153-339 170-370 (512)
24 KOG0651|consensus 100.0 2.7E-30 5.8E-35 238.6 13.7 179 158-339 125-308 (388)
25 PRK03992 proteasome-activating 100.0 7E-30 1.5E-34 250.8 17.4 179 158-339 124-307 (389)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 3.8E-29 8.2E-34 250.6 17.7 174 159-340 222-398 (489)
27 TIGR01241 FtsH_fam ATP-depende 100.0 3.4E-29 7.3E-34 253.2 16.6 182 154-339 44-230 (495)
28 PTZ00361 26 proteosome regulat 100.0 2.9E-29 6.3E-34 248.1 14.3 179 158-339 176-359 (438)
29 PLN00020 ribulose bisphosphate 100.0 1.4E-28 3E-33 234.5 14.0 174 161-339 111-303 (413)
30 KOG0732|consensus 100.0 4.9E-28 1.1E-32 253.8 12.9 178 160-340 260-444 (1080)
31 TIGR01242 26Sp45 26S proteasom 99.9 2.2E-27 4.7E-32 231.4 16.3 180 157-339 114-298 (364)
32 CHL00176 ftsH cell division pr 99.9 3.5E-27 7.7E-32 243.1 16.2 180 156-339 174-358 (638)
33 KOG0730|consensus 99.9 2.2E-26 4.7E-31 230.2 15.0 176 160-340 180-357 (693)
34 TIGR01243 CDC48 AAA family ATP 99.9 2.7E-26 5.8E-31 242.0 16.4 177 160-339 173-351 (733)
35 PRK10733 hflB ATP-dependent me 99.9 3.5E-25 7.6E-30 229.8 16.4 183 154-340 141-328 (644)
36 CHL00206 ycf2 Ycf2; Provisiona 99.9 4.6E-25 1E-29 240.3 13.5 143 191-340 1622-1810(2281)
37 KOG0741|consensus 99.9 5.8E-24 1.2E-28 207.8 11.7 176 161-339 215-406 (744)
38 PF00004 AAA: ATPase family as 99.9 6.2E-23 1.3E-27 169.8 14.2 130 203-333 1-132 (132)
39 KOG0744|consensus 99.8 1.5E-21 3.2E-26 181.7 8.4 183 154-338 130-331 (423)
40 TIGR02881 spore_V_K stage V sp 99.8 1.4E-19 3.1E-24 168.7 14.4 166 163-339 4-183 (261)
41 CHL00181 cbbX CbbX; Provisiona 99.8 1.4E-19 2.9E-24 171.1 14.3 166 164-339 22-201 (287)
42 KOG0741|consensus 99.8 8.5E-20 1.8E-24 178.8 11.3 238 93-333 419-671 (744)
43 TIGR02880 cbbX_cfxQ probable R 99.8 2.7E-19 5.9E-24 168.8 14.0 163 166-338 23-199 (284)
44 PRK10865 protein disaggregatio 99.8 1.1E-18 2.4E-23 186.4 16.2 275 21-339 50-346 (857)
45 KOG0743|consensus 99.8 7.5E-19 1.6E-23 170.6 11.7 169 161-338 197-374 (457)
46 TIGR02639 ClpA ATP-dependent C 99.8 3.7E-18 8E-23 180.2 17.3 276 22-339 44-350 (731)
47 TIGR03346 chaperone_ClpB ATP-d 99.8 8.3E-18 1.8E-22 180.0 16.9 275 21-339 45-341 (852)
48 PRK11034 clpA ATP-dependent Cl 99.7 2.6E-17 5.5E-22 173.0 17.3 155 161-339 182-354 (758)
49 CHL00095 clpC Clp protease ATP 99.7 1.2E-17 2.5E-22 178.3 14.2 154 161-338 175-345 (821)
50 PF05496 RuvB_N: Holliday junc 99.7 1.2E-17 2.7E-22 150.3 11.8 146 161-334 20-179 (233)
51 KOG0742|consensus 99.7 1.1E-17 2.4E-22 160.0 11.6 167 163-340 353-521 (630)
52 TIGR03345 VI_ClpV1 type VI sec 99.7 4.7E-17 1E-21 173.6 15.0 154 161-338 183-354 (852)
53 TIGR00763 lon ATP-dependent pr 99.7 4.3E-17 9.4E-22 173.0 12.3 156 166-338 321-496 (775)
54 COG2256 MGS1 ATPase related to 99.7 2.9E-16 6.4E-21 150.5 11.7 135 161-334 20-163 (436)
55 TIGR00635 ruvB Holliday juncti 99.7 6.1E-16 1.3E-20 146.9 12.2 148 163-338 2-163 (305)
56 PRK00080 ruvB Holliday junctio 99.7 1E-15 2.3E-20 147.2 13.1 150 161-338 21-184 (328)
57 TIGR00390 hslU ATP-dependent p 99.6 3.2E-16 6.9E-21 152.9 8.6 172 167-338 14-337 (441)
58 COG0542 clpA ATP-binding subun 99.6 3.8E-15 8.2E-20 154.6 15.2 271 22-338 45-337 (786)
59 PRK14956 DNA polymerase III su 99.6 3.3E-15 7.2E-20 148.7 12.2 141 161-336 14-182 (484)
60 COG2255 RuvB Holliday junction 99.6 4.5E-15 9.7E-20 136.7 11.6 148 161-336 22-183 (332)
61 PRK12323 DNA polymerase III su 99.6 2.3E-15 4.9E-20 153.6 10.6 143 160-337 11-186 (700)
62 PRK05201 hslU ATP-dependent pr 99.6 1.9E-15 4.1E-20 147.6 9.5 177 162-338 11-339 (443)
63 PRK05342 clpX ATP-dependent pr 99.6 5.8E-15 1.3E-19 145.8 11.4 160 154-313 59-239 (412)
64 PRK14962 DNA polymerase III su 99.6 7.6E-15 1.6E-19 147.4 12.2 143 161-338 10-180 (472)
65 PRK07940 DNA polymerase III su 99.6 5.2E-15 1.1E-19 145.4 10.5 151 163-338 3-180 (394)
66 PHA02544 44 clamp loader, smal 99.6 1.1E-14 2.4E-19 139.0 11.8 150 159-339 15-165 (316)
67 PRK07003 DNA polymerase III su 99.6 9.5E-15 2.1E-19 150.9 11.3 142 161-337 12-181 (830)
68 COG0466 Lon ATP-dependent Lon 99.6 1.8E-14 4E-19 146.4 12.7 152 166-327 324-489 (782)
69 KOG2004|consensus 99.6 2E-14 4.4E-19 145.5 12.7 152 166-327 412-577 (906)
70 KOG0736|consensus 99.6 3.1E-14 6.8E-19 145.1 13.0 139 199-339 430-568 (953)
71 PRK13342 recombination factor 99.6 2.7E-14 5.8E-19 141.7 12.3 139 161-338 8-155 (413)
72 PRK07994 DNA polymerase III su 99.5 2.7E-14 5.9E-19 147.2 12.0 142 161-337 12-181 (647)
73 cd00009 AAA The AAA+ (ATPases 99.5 1.8E-13 4E-18 113.2 14.7 139 169-332 2-150 (151)
74 PRK14960 DNA polymerase III su 99.5 3.3E-14 7.1E-19 145.5 12.0 142 161-337 11-180 (702)
75 PRK14949 DNA polymerase III su 99.5 3.9E-14 8.4E-19 148.8 12.3 147 161-336 12-180 (944)
76 PRK14958 DNA polymerase III su 99.5 3E-14 6.5E-19 144.4 10.9 141 161-336 12-180 (509)
77 PRK14961 DNA polymerase III su 99.5 9.5E-14 2.1E-18 135.5 13.9 149 161-338 12-182 (363)
78 TIGR00382 clpX endopeptidase C 99.5 4.2E-14 9E-19 139.3 11.1 160 154-313 65-247 (413)
79 PRK11034 clpA ATP-dependent Cl 99.5 1.1E-13 2.3E-18 145.8 13.0 153 166-337 459-656 (758)
80 KOG0735|consensus 99.5 6.9E-14 1.5E-18 141.6 10.6 162 165-339 408-578 (952)
81 PLN03025 replication factor C 99.5 1.2E-13 2.7E-18 132.4 11.6 143 160-338 8-162 (319)
82 COG1219 ClpX ATP-dependent pro 99.5 6.7E-14 1.4E-18 130.7 9.2 177 115-297 16-203 (408)
83 PRK06645 DNA polymerase III su 99.5 1.3E-13 2.8E-18 139.2 12.0 150 160-338 16-191 (507)
84 PRK04195 replication factor C 99.5 2.3E-13 4.9E-18 137.6 13.7 150 159-338 8-164 (482)
85 PRK14964 DNA polymerase III su 99.5 1.1E-13 2.3E-18 139.0 11.0 142 161-337 9-178 (491)
86 PRK14963 DNA polymerase III su 99.5 1.4E-13 3E-18 139.3 11.9 142 161-337 10-178 (504)
87 PF05673 DUF815: Protein of un 99.5 4.7E-13 1E-17 122.2 13.3 150 160-338 22-198 (249)
88 PRK10787 DNA-binding ATP-depen 99.5 1.3E-13 2.9E-18 145.9 11.3 153 166-336 323-495 (784)
89 PRK05563 DNA polymerase III su 99.5 1.8E-13 3.8E-18 140.4 11.5 142 161-337 12-181 (559)
90 PRK14957 DNA polymerase III su 99.5 2.9E-13 6.2E-18 137.7 12.6 142 161-337 12-181 (546)
91 PRK14952 DNA polymerase III su 99.5 2.9E-13 6.3E-18 138.7 12.4 148 161-337 9-180 (584)
92 PRK07764 DNA polymerase III su 99.5 2.5E-13 5.3E-18 144.1 12.0 147 161-336 11-181 (824)
93 KOG0989|consensus 99.5 2.6E-13 5.6E-18 126.3 10.6 147 160-335 31-190 (346)
94 PRK08691 DNA polymerase III su 99.5 2.4E-13 5.2E-18 140.2 11.4 149 160-337 11-181 (709)
95 PRK05896 DNA polymerase III su 99.5 2.6E-13 5.7E-18 138.4 11.4 142 161-337 12-181 (605)
96 PRK14969 DNA polymerase III su 99.5 1.6E-13 3.5E-18 139.7 10.0 148 161-337 12-181 (527)
97 PRK14951 DNA polymerase III su 99.5 3.2E-13 7E-18 139.0 11.4 148 161-337 12-186 (618)
98 PRK14959 DNA polymerase III su 99.5 4E-13 8.6E-18 137.7 11.7 142 161-337 12-181 (624)
99 PRK14965 DNA polymerase III su 99.4 2.9E-13 6.3E-18 139.3 10.5 141 161-336 12-180 (576)
100 PRK07133 DNA polymerase III su 99.4 4.8E-13 1E-17 139.0 12.0 149 160-337 13-180 (725)
101 PF01078 Mg_chelatase: Magnesi 99.4 8.7E-14 1.9E-18 124.3 5.5 145 163-337 1-205 (206)
102 TIGR02640 gas_vesic_GvpN gas v 99.4 1E-12 2.2E-17 122.8 12.6 126 199-337 20-188 (262)
103 PRK06305 DNA polymerase III su 99.4 7.8E-13 1.7E-17 132.4 12.3 148 161-337 13-183 (451)
104 COG0464 SpoVK ATPases of the A 99.4 5.9E-13 1.3E-17 135.0 11.4 151 184-339 3-155 (494)
105 TIGR02639 ClpA ATP-dependent C 99.4 4.6E-12 9.9E-17 134.1 18.5 153 166-337 455-652 (731)
106 PRK12402 replication factor C 99.4 1.2E-12 2.7E-17 125.5 12.7 149 160-338 10-188 (337)
107 PRK14970 DNA polymerase III su 99.4 9.4E-13 2E-17 128.5 11.9 148 161-338 13-171 (367)
108 KOG2028|consensus 99.4 6.1E-13 1.3E-17 126.2 9.8 134 161-329 134-277 (554)
109 PF07728 AAA_5: AAA domain (dy 99.4 7.4E-13 1.6E-17 111.3 9.4 112 202-325 1-139 (139)
110 TIGR02902 spore_lonB ATP-depen 99.4 7.1E-13 1.5E-17 135.3 10.7 151 161-337 61-266 (531)
111 PRK06647 DNA polymerase III su 99.4 1E-12 2.2E-17 134.6 11.8 149 161-338 12-182 (563)
112 TIGR02397 dnaX_nterm DNA polym 99.4 7.7E-13 1.7E-17 128.0 10.2 144 160-338 9-180 (355)
113 PRK13407 bchI magnesium chelat 99.4 3.9E-13 8.5E-18 129.3 8.0 151 161-336 4-204 (334)
114 PRK14948 DNA polymerase III su 99.4 1.8E-12 3.9E-17 134.1 12.0 147 161-336 12-182 (620)
115 PRK14953 DNA polymerase III su 99.4 1.8E-12 3.9E-17 130.8 11.3 150 160-338 11-182 (486)
116 PRK13341 recombination factor 99.4 1.2E-12 2.6E-17 137.3 10.2 139 161-338 24-172 (725)
117 PRK09111 DNA polymerase III su 99.4 2.8E-12 6E-17 132.1 11.9 148 161-337 20-194 (598)
118 PRK11331 5-methylcytosine-spec 99.4 6.3E-12 1.4E-16 124.2 13.9 143 164-333 174-357 (459)
119 PRK14955 DNA polymerase III su 99.4 1.6E-12 3.5E-17 128.3 9.8 147 161-336 12-188 (397)
120 PRK00149 dnaA chromosomal repl 99.4 2.1E-12 4.6E-17 129.5 10.6 156 160-339 117-285 (450)
121 TIGR02903 spore_lon_C ATP-depe 99.4 1.6E-11 3.5E-16 127.3 17.1 150 161-336 150-355 (615)
122 TIGR00362 DnaA chromosomal rep 99.4 1.8E-12 4E-17 128.2 9.6 128 199-339 135-273 (405)
123 smart00382 AAA ATPases associa 99.4 2.3E-12 5E-17 105.4 8.6 128 200-334 2-147 (148)
124 PHA02244 ATPase-like protein 99.4 3.6E-12 7.8E-17 123.0 11.0 126 198-336 117-263 (383)
125 TIGR01650 PD_CobS cobaltochela 99.4 2.3E-12 5E-17 122.9 9.1 130 199-337 63-223 (327)
126 PRK08451 DNA polymerase III su 99.3 4.5E-12 9.7E-17 128.5 11.5 143 160-337 9-179 (535)
127 COG0542 clpA ATP-binding subun 99.3 4.7E-12 1E-16 131.8 11.6 149 166-335 492-693 (786)
128 TIGR02928 orc1/cdc6 family rep 99.3 1.3E-11 2.8E-16 120.0 13.9 154 166-338 16-203 (365)
129 PRK14954 DNA polymerase III su 99.3 6.9E-12 1.5E-16 129.5 12.6 148 161-337 12-189 (620)
130 COG0714 MoxR-like ATPases [Gen 99.3 5.3E-12 1.1E-16 121.6 10.9 144 167-337 26-192 (329)
131 CHL00081 chlI Mg-protoporyphyr 99.3 4.8E-12 1E-16 122.3 10.3 149 161-336 13-220 (350)
132 PF07724 AAA_2: AAA domain (Cd 99.3 3.4E-12 7.4E-17 111.8 8.2 114 199-314 2-130 (171)
133 PRK00440 rfc replication facto 99.3 1.3E-11 2.8E-16 117.4 12.7 145 158-338 10-165 (319)
134 PRK05564 DNA polymerase III su 99.3 1E-11 2.3E-16 118.7 11.3 142 163-337 2-155 (313)
135 TIGR03345 VI_ClpV1 type VI sec 99.3 1.2E-11 2.6E-16 132.4 12.9 127 166-313 567-718 (852)
136 PRK10865 protein disaggregatio 99.3 3.3E-11 7.3E-16 129.2 16.2 156 163-337 566-769 (857)
137 PF00158 Sigma54_activat: Sigm 99.3 2.6E-12 5.6E-17 112.3 6.3 134 167-328 1-157 (168)
138 PRK14950 DNA polymerase III su 99.3 9.9E-12 2.2E-16 128.4 11.3 147 161-336 12-181 (585)
139 TIGR03420 DnaA_homol_Hda DnaA 99.3 3.3E-11 7.1E-16 109.2 13.4 143 161-338 11-163 (226)
140 PRK08903 DnaA regulatory inact 99.3 1.7E-11 3.7E-16 111.7 11.4 139 159-337 12-160 (227)
141 COG3829 RocR Transcriptional r 99.3 4.5E-12 9.7E-17 126.1 7.6 152 161-340 241-423 (560)
142 COG2812 DnaX DNA polymerase II 99.3 3.8E-12 8.3E-17 127.8 6.7 144 160-332 11-176 (515)
143 PRK14088 dnaA chromosomal repl 99.3 1E-11 2.2E-16 124.1 9.8 128 200-339 130-268 (440)
144 PRK00411 cdc6 cell division co 99.3 7.8E-11 1.7E-15 115.8 15.7 154 165-338 30-211 (394)
145 PRK07471 DNA polymerase III su 99.3 2.1E-11 4.5E-16 119.0 11.2 149 160-337 14-203 (365)
146 PRK08084 DNA replication initi 99.3 7.3E-11 1.6E-15 108.5 14.0 145 161-339 18-172 (235)
147 PRK06893 DNA replication initi 99.3 4.4E-11 9.5E-16 109.6 12.2 149 159-339 10-166 (229)
148 TIGR02442 Cob-chelat-sub cobal 99.3 1.4E-11 2.9E-16 128.4 9.9 144 164-335 3-201 (633)
149 CHL00095 clpC Clp protease ATP 99.3 4.2E-11 9.2E-16 128.2 13.8 129 166-313 510-661 (821)
150 PRK09112 DNA polymerase III su 99.3 4.3E-11 9.3E-16 116.2 12.4 150 160-338 18-204 (351)
151 TIGR03346 chaperone_ClpB ATP-d 99.3 4.1E-11 8.8E-16 128.8 13.3 155 164-337 564-766 (852)
152 PRK14971 DNA polymerase III su 99.3 3.2E-11 7E-16 124.9 11.9 148 161-337 13-183 (614)
153 PTZ00112 origin recognition co 99.3 4.7E-11 1E-15 124.7 12.6 153 165-338 755-940 (1164)
154 TIGR02030 BchI-ChlI magnesium 99.2 2.1E-11 4.6E-16 117.5 9.3 145 164-336 3-207 (337)
155 PRK08727 hypothetical protein; 99.2 1.2E-10 2.6E-15 106.9 13.3 145 160-339 14-167 (233)
156 COG0470 HolB ATPase involved i 99.2 6.1E-11 1.3E-15 112.9 11.3 141 166-336 2-170 (325)
157 PRK11608 pspF phage shock prot 99.2 5E-11 1.1E-15 114.8 10.4 152 162-340 3-183 (326)
158 PRK08058 DNA polymerase III su 99.2 5.7E-11 1.2E-15 114.5 10.1 146 163-337 3-172 (329)
159 PRK14086 dnaA chromosomal repl 99.2 9.4E-11 2E-15 120.0 11.7 126 201-339 315-451 (617)
160 PRK12422 chromosomal replicati 99.2 4.8E-11 1E-15 119.3 9.4 128 200-339 141-276 (445)
161 TIGR02974 phageshock_pspF psp 99.2 5.1E-11 1.1E-15 114.9 9.1 147 167-340 1-176 (329)
162 PRK15424 propionate catabolism 99.2 6E-11 1.3E-15 120.8 9.8 152 162-340 216-405 (538)
163 PF00308 Bac_DnaA: Bacterial d 99.2 1.1E-10 2.4E-15 106.3 10.2 155 160-339 3-171 (219)
164 COG1220 HslU ATP-dependent pro 99.2 1.3E-10 2.9E-15 109.6 10.7 70 167-236 17-86 (444)
165 TIGR02329 propionate_PrpR prop 99.2 8.7E-11 1.9E-15 119.6 10.2 153 161-340 208-390 (526)
166 PF07726 AAA_3: ATPase family 99.2 2.3E-11 5E-16 100.7 4.9 107 202-326 1-130 (131)
167 PRK07399 DNA polymerase III su 99.2 9.9E-11 2.1E-15 112.1 10.0 145 163-337 2-185 (314)
168 TIGR00368 Mg chelatase-related 99.2 9.7E-11 2.1E-15 118.4 10.2 145 161-335 188-392 (499)
169 TIGR01817 nifA Nif-specific re 99.2 8.7E-11 1.9E-15 120.3 10.0 153 161-340 192-373 (534)
170 TIGR00678 holB DNA polymerase 99.2 1.7E-10 3.7E-15 102.1 10.1 120 198-338 12-159 (188)
171 PRK13531 regulatory ATPase Rav 99.2 2E-10 4.4E-15 114.6 11.1 142 167-336 22-182 (498)
172 KOG0991|consensus 99.1 8.5E-11 1.8E-15 106.0 7.3 137 159-327 21-166 (333)
173 PRK10820 DNA-binding transcrip 99.1 2.5E-10 5.4E-15 116.5 11.6 154 160-340 199-381 (520)
174 COG2607 Predicted ATPase (AAA+ 99.1 9.7E-10 2.1E-14 99.6 13.7 152 157-337 52-229 (287)
175 COG0606 Predicted ATPase with 99.1 2.5E-11 5.3E-16 119.4 3.6 148 161-338 175-383 (490)
176 COG3604 FhlA Transcriptional r 99.1 5.6E-11 1.2E-15 117.1 5.9 155 158-340 216-400 (550)
177 PF13177 DNA_pol3_delta2: DNA 99.1 5.8E-10 1.3E-14 96.8 11.5 133 169-333 1-160 (162)
178 PRK06620 hypothetical protein; 99.1 5E-10 1.1E-14 101.6 11.2 135 158-338 9-151 (214)
179 PRK15429 formate hydrogenlyase 99.1 4.1E-10 9E-15 118.6 12.0 153 161-340 372-553 (686)
180 KOG0745|consensus 99.1 3.7E-10 7.9E-15 109.6 10.4 137 200-336 226-388 (564)
181 PRK05022 anaerobic nitric oxid 99.1 6.1E-10 1.3E-14 113.5 12.5 151 163-340 185-364 (509)
182 PRK05642 DNA replication initi 99.1 6.4E-10 1.4E-14 102.2 11.5 119 200-339 45-171 (234)
183 COG2204 AtoC Response regulato 99.1 3.5E-10 7.6E-15 112.3 9.7 152 162-340 138-318 (464)
184 PRK11388 DNA-binding transcrip 99.1 6E-10 1.3E-14 116.4 11.8 153 161-340 321-499 (638)
185 PRK05707 DNA polymerase III su 99.1 4.2E-10 9.1E-15 108.4 9.6 121 198-337 20-168 (328)
186 COG1221 PspF Transcriptional r 99.1 1.2E-10 2.5E-15 113.8 5.9 153 159-340 72-253 (403)
187 KOG1051|consensus 99.1 1.6E-09 3.5E-14 114.4 14.4 271 26-338 62-354 (898)
188 PRK12377 putative replication 99.1 1.8E-09 4E-14 99.9 12.4 113 200-326 101-223 (248)
189 smart00763 AAA_PrkA PrkA AAA d 99.0 2.5E-09 5.5E-14 103.3 13.1 63 163-233 48-118 (361)
190 PRK09862 putative ATP-dependen 99.0 8.6E-10 1.9E-14 111.4 9.6 145 162-336 188-390 (506)
191 PF14532 Sigma54_activ_2: Sigm 99.0 6.5E-10 1.4E-14 93.7 7.4 127 168-335 1-137 (138)
192 PRK08181 transposase; Validate 99.0 1.1E-08 2.4E-13 95.9 16.2 73 198-272 104-180 (269)
193 smart00350 MCM minichromosome 99.0 6.9E-10 1.5E-14 113.0 7.8 156 166-337 204-390 (509)
194 PRK14087 dnaA chromosomal repl 99.0 2.7E-09 5.9E-14 107.0 11.4 126 200-339 141-280 (450)
195 PRK07952 DNA replication prote 99.0 5.3E-09 1.2E-13 96.6 12.3 112 200-325 99-221 (244)
196 PRK08116 hypothetical protein; 99.0 3E-09 6.4E-14 99.8 10.5 124 199-336 113-251 (268)
197 COG1474 CDC6 Cdc6-related prot 99.0 6.7E-09 1.4E-13 101.4 13.3 146 167-335 19-189 (366)
198 PRK06871 DNA polymerase III su 99.0 4.1E-09 9E-14 101.2 11.4 124 198-337 22-169 (325)
199 PRK06964 DNA polymerase III su 98.9 4.3E-09 9.3E-14 101.7 10.5 125 198-338 19-195 (342)
200 PRK07993 DNA polymerase III su 98.9 7E-09 1.5E-13 100.2 11.5 121 198-337 22-170 (334)
201 TIGR02031 BchD-ChlD magnesium 98.9 2.3E-09 5E-14 110.8 7.7 124 200-334 16-160 (589)
202 PRK06526 transposase; Provisio 98.9 1.5E-08 3.2E-13 94.3 12.2 74 197-272 95-172 (254)
203 KOG1051|consensus 98.9 1.2E-08 2.6E-13 108.0 12.8 127 166-313 563-710 (898)
204 PRK08769 DNA polymerase III su 98.9 8.5E-09 1.8E-13 98.8 10.6 124 198-337 24-175 (319)
205 COG0593 DnaA ATPase involved i 98.9 1.1E-08 2.3E-13 100.5 10.9 128 199-339 112-249 (408)
206 PRK06090 DNA polymerase III su 98.9 1.5E-08 3.3E-13 97.0 11.6 121 198-337 23-170 (319)
207 COG1239 ChlI Mg-chelatase subu 98.9 1.8E-08 3.8E-13 98.2 11.7 151 161-336 13-220 (423)
208 TIGR02915 PEP_resp_reg putativ 98.9 5.3E-09 1.2E-13 104.5 8.0 151 163-340 137-316 (445)
209 PTZ00111 DNA replication licen 98.8 6.1E-09 1.3E-13 110.3 8.3 155 166-335 451-645 (915)
210 PRK09087 hypothetical protein; 98.8 2.5E-08 5.4E-13 91.3 10.5 109 201-339 45-158 (226)
211 PF01695 IstB_IS21: IstB-like 98.8 4.7E-09 1E-13 92.5 4.8 73 197-271 44-120 (178)
212 PRK10923 glnG nitrogen regulat 98.8 3.1E-08 6.7E-13 99.7 11.2 151 163-340 136-315 (469)
213 PRK11361 acetoacetate metaboli 98.8 3.2E-08 6.9E-13 99.1 10.9 151 163-340 141-320 (457)
214 PF05621 TniB: Bacterial TniB 98.8 4.5E-08 9.8E-13 92.3 10.7 145 167-327 36-207 (302)
215 KOG1969|consensus 98.7 1E-07 2.2E-12 97.8 12.7 166 160-336 266-470 (877)
216 KOG0478|consensus 98.7 1.7E-08 3.7E-13 102.6 7.1 166 167-337 431-616 (804)
217 PF13401 AAA_22: AAA domain; P 98.7 6.6E-08 1.4E-12 79.7 9.4 74 199-272 3-100 (131)
218 PRK06835 DNA replication prote 98.7 3.7E-08 8.1E-13 94.9 8.8 122 200-335 183-316 (329)
219 PRK08939 primosomal protein Dn 98.7 1.4E-07 3.1E-12 90.1 12.2 71 199-271 155-229 (306)
220 COG1484 DnaC DNA replication p 98.7 1.4E-07 3.1E-12 87.8 11.4 71 199-271 104-179 (254)
221 PRK09183 transposase/IS protei 98.7 4.6E-08 1E-12 91.3 8.2 73 198-271 100-176 (259)
222 PRK08699 DNA polymerase III su 98.7 5.2E-08 1.1E-12 93.8 8.4 123 198-337 19-175 (325)
223 KOG0990|consensus 98.7 3.6E-08 7.8E-13 92.8 6.9 144 157-333 33-190 (360)
224 PRK04132 replication factor C 98.7 7.1E-08 1.5E-12 102.6 9.8 116 200-337 564-692 (846)
225 PF13173 AAA_14: AAA domain 98.7 1.4E-07 3.1E-12 78.3 9.6 69 201-271 3-73 (128)
226 PF03969 AFG1_ATPase: AFG1-lik 98.6 1.8E-07 4E-12 91.2 11.0 102 197-314 59-168 (362)
227 PRK13765 ATP-dependent proteas 98.6 1.5E-07 3.2E-12 97.9 9.6 49 161-225 27-75 (637)
228 TIGR01818 ntrC nitrogen regula 98.6 1.3E-07 2.7E-12 95.0 8.8 153 164-340 133-311 (463)
229 PRK15115 response regulator Gl 98.6 3.5E-07 7.5E-12 91.4 11.5 128 198-340 155-311 (444)
230 PRK06921 hypothetical protein; 98.6 3.8E-07 8.2E-12 85.5 10.8 69 199-270 116-188 (266)
231 TIGR00602 rad24 checkpoint pro 98.6 2.3E-07 5E-12 96.3 9.7 61 160-229 79-139 (637)
232 PRK05917 DNA polymerase III su 98.5 7.7E-07 1.7E-11 84.1 11.7 121 198-334 17-154 (290)
233 PF06068 TIP49: TIP49 C-termin 98.5 2.1E-07 4.6E-12 89.7 8.0 70 163-241 22-93 (398)
234 cd01120 RecA-like_NTPases RecA 98.5 1.1E-06 2.3E-11 74.3 11.6 72 203-274 2-100 (165)
235 COG3283 TyrR Transcriptional r 98.5 5.4E-07 1.2E-11 86.1 9.4 154 160-340 199-376 (511)
236 KOG2035|consensus 98.5 1.2E-06 2.5E-11 81.3 11.2 148 161-338 9-190 (351)
237 COG1224 TIP49 DNA helicase TIP 98.5 3.1E-07 6.6E-12 87.7 7.0 74 164-246 38-113 (450)
238 PRK13406 bchD magnesium chelat 98.5 2.7E-07 5.8E-12 95.2 7.2 123 201-337 26-172 (584)
239 COG1241 MCM2 Predicted ATPase 98.5 3.6E-08 7.9E-13 102.1 0.9 158 166-330 287-465 (682)
240 PRK05818 DNA polymerase III su 98.4 1.4E-06 3.1E-11 80.8 9.2 121 198-334 5-147 (261)
241 PF12774 AAA_6: Hydrolytic ATP 98.4 7.9E-07 1.7E-11 81.6 7.4 126 199-336 31-169 (231)
242 PRK10365 transcriptional regul 98.4 1E-06 2.2E-11 87.8 8.5 151 166-340 140-316 (441)
243 KOG0480|consensus 98.3 1.4E-07 3E-12 95.5 1.5 161 162-329 342-523 (764)
244 TIGR03015 pepcterm_ATPase puta 98.3 1.7E-05 3.6E-10 73.7 14.7 26 200-225 43-68 (269)
245 PF00493 MCM: MCM2/3/5 family 98.3 4.2E-08 9.1E-13 94.7 -3.0 153 166-335 25-209 (331)
246 PF01637 Arch_ATPase: Archaeal 98.3 1.5E-06 3.3E-11 77.9 7.3 43 168-224 2-44 (234)
247 KOG0477|consensus 98.3 3.1E-07 6.8E-12 92.7 2.8 148 166-330 450-628 (854)
248 KOG2228|consensus 98.3 5E-06 1.1E-10 79.1 10.2 148 167-335 26-205 (408)
249 KOG2170|consensus 98.3 3.8E-06 8.2E-11 78.8 9.1 96 167-272 84-191 (344)
250 TIGR02237 recomb_radB DNA repa 98.3 4.5E-06 9.6E-11 74.9 9.4 77 197-273 9-111 (209)
251 PF00910 RNA_helicase: RNA hel 98.3 3.1E-06 6.8E-11 68.2 7.6 23 203-225 1-23 (107)
252 TIGR00764 lon_rel lon-related 98.3 1.7E-06 3.7E-11 89.9 7.4 85 161-261 14-108 (608)
253 KOG0482|consensus 98.3 2.6E-07 5.7E-12 91.4 1.2 162 166-336 343-528 (721)
254 PRK07276 DNA polymerase III su 98.2 8.1E-06 1.8E-10 77.3 10.9 134 169-333 6-162 (290)
255 PF12775 AAA_7: P-loop contain 98.2 2.3E-06 4.9E-11 80.5 7.1 131 198-338 31-184 (272)
256 PF05729 NACHT: NACHT domain 98.2 1E-05 2.3E-10 68.7 9.5 73 202-274 2-96 (166)
257 PRK07132 DNA polymerase III su 98.2 1E-05 2.2E-10 77.0 10.1 117 198-337 16-152 (299)
258 PF06309 Torsin: Torsin; Inte 98.2 7.5E-06 1.6E-10 67.8 7.9 52 166-224 26-77 (127)
259 COG1485 Predicted ATPase [Gene 98.2 2E-05 4.3E-10 75.6 11.7 101 198-314 63-171 (367)
260 PF03215 Rad17: Rad17 cell cyc 98.2 5.9E-06 1.3E-10 84.2 8.4 62 160-230 14-75 (519)
261 cd01124 KaiC KaiC is a circadi 98.2 2.8E-05 6E-10 68.0 11.6 71 203-273 2-109 (187)
262 KOG1514|consensus 98.1 1.9E-05 4.1E-10 81.3 11.6 130 167-317 398-554 (767)
263 KOG0481|consensus 98.1 1.3E-06 2.9E-11 86.7 2.9 153 166-332 332-512 (729)
264 TIGR01618 phage_P_loop phage n 98.1 1E-05 2.3E-10 73.6 8.6 74 198-273 10-95 (220)
265 PRK08118 topology modulation p 98.1 8.9E-06 1.9E-10 70.9 7.0 33 202-234 3-35 (167)
266 PF13207 AAA_17: AAA domain; P 98.1 3.4E-06 7.3E-11 68.7 3.9 31 203-233 2-32 (121)
267 PHA00729 NTP-binding motif con 98.1 1.2E-05 2.7E-10 73.2 7.7 25 201-225 18-42 (226)
268 PRK09361 radB DNA repair and r 98.1 4.2E-05 9E-10 69.5 11.3 38 197-234 20-60 (225)
269 KOG0479|consensus 98.0 2.3E-06 5E-11 86.1 2.9 155 166-329 302-479 (818)
270 PRK00131 aroK shikimate kinase 98.0 7.2E-06 1.6E-10 70.8 4.9 35 198-232 2-36 (175)
271 PRK15455 PrkA family serine pr 98.0 1E-05 2.3E-10 82.4 6.4 64 162-233 73-137 (644)
272 PF05707 Zot: Zonular occluden 98.0 1E-05 2.2E-10 72.2 5.7 121 203-332 3-144 (193)
273 KOG1942|consensus 98.0 1.4E-05 3E-10 74.9 6.6 71 166-245 39-111 (456)
274 TIGR02012 tigrfam_recA protein 98.0 7.6E-05 1.6E-09 71.7 11.4 78 197-274 52-148 (321)
275 KOG2227|consensus 98.0 5.2E-05 1.1E-09 75.0 10.3 135 166-322 151-307 (529)
276 PRK07261 topology modulation p 97.9 2.2E-05 4.9E-10 68.6 7.0 34 202-235 2-35 (171)
277 KOG2383|consensus 97.9 4E-05 8.7E-10 74.5 9.1 28 197-224 111-138 (467)
278 PF13191 AAA_16: AAA ATPase do 97.9 1.8E-05 4E-10 68.7 6.2 59 167-236 2-63 (185)
279 PHA02624 large T antigen; Prov 97.9 7.2E-05 1.6E-09 76.7 11.0 120 198-332 429-560 (647)
280 COG4650 RtcR Sigma54-dependent 97.9 3.3E-05 7.1E-10 72.5 7.8 72 198-273 206-296 (531)
281 PF13671 AAA_33: AAA domain; P 97.9 4.2E-05 9.2E-10 63.9 7.6 35 203-239 2-36 (143)
282 COG3284 AcoR Transcriptional a 97.9 2.7E-05 5.9E-10 79.5 6.9 127 199-340 335-489 (606)
283 COG5271 MDN1 AAA ATPase contai 97.9 2.1E-05 4.6E-10 86.8 6.4 134 198-334 1541-1690(4600)
284 PLN03210 Resistant to P. syrin 97.9 8.4E-05 1.8E-09 83.0 11.4 54 161-226 180-233 (1153)
285 cd00983 recA RecA is a bacter 97.9 0.00013 2.8E-09 70.2 11.2 78 197-274 52-148 (325)
286 cd01121 Sms Sms (bacterial rad 97.9 5.1E-05 1.1E-09 74.5 8.5 78 197-274 79-173 (372)
287 PRK11823 DNA repair protein Ra 97.8 7.8E-05 1.7E-09 74.9 9.6 78 197-274 77-171 (446)
288 PRK08533 flagellar accessory p 97.8 0.00029 6.3E-09 64.6 12.5 76 197-272 21-130 (230)
289 PF00931 NB-ARC: NB-ARC domain 97.8 0.0001 2.2E-09 68.9 9.4 26 198-223 17-42 (287)
290 KOG1970|consensus 97.8 0.00024 5.1E-09 71.6 12.1 66 160-232 77-142 (634)
291 PRK13947 shikimate kinase; Pro 97.8 2.5E-05 5.5E-10 67.6 4.5 31 202-232 3-33 (171)
292 PRK03839 putative kinase; Prov 97.8 2.5E-05 5.5E-10 68.4 4.1 31 202-232 2-32 (180)
293 cd00464 SK Shikimate kinase (S 97.8 2.8E-05 6.1E-10 65.8 4.3 31 202-232 1-31 (154)
294 PF00437 T2SE: Type II/IV secr 97.8 5.1E-05 1.1E-09 70.9 6.4 98 161-270 100-208 (270)
295 PRK06067 flagellar accessory p 97.7 0.00049 1.1E-08 62.9 12.5 76 197-272 22-133 (234)
296 COG1618 Predicted nucleotide k 97.7 0.00032 6.9E-09 60.5 10.2 26 199-224 4-29 (179)
297 TIGR02688 conserved hypothetic 97.7 6.3E-05 1.4E-09 74.3 6.7 64 197-272 206-273 (449)
298 cd01131 PilT Pilus retraction 97.7 7.5E-05 1.6E-09 66.8 6.7 67 202-268 3-83 (198)
299 PF06745 KaiC: KaiC; InterPro 97.7 0.00033 7.1E-09 63.6 11.0 95 197-294 16-147 (226)
300 TIGR02858 spore_III_AA stage I 97.7 0.00012 2.7E-09 68.7 8.3 69 201-269 112-204 (270)
301 PRK06762 hypothetical protein; 97.7 0.00015 3.3E-09 62.5 8.3 39 200-238 2-40 (166)
302 PRK10536 hypothetical protein; 97.7 0.00089 1.9E-08 62.3 13.7 46 162-223 52-97 (262)
303 PRK00625 shikimate kinase; Pro 97.7 3.8E-05 8.1E-10 67.5 4.4 31 202-232 2-32 (173)
304 PHA02774 E1; Provisional 97.7 0.00042 9.2E-09 70.9 12.4 33 200-232 434-467 (613)
305 PRK13948 shikimate kinase; Pro 97.7 4.6E-05 9.9E-10 67.5 4.8 36 197-232 7-42 (182)
306 PF03266 NTPase_1: NTPase; In 97.7 7.5E-05 1.6E-09 65.2 6.0 23 202-224 1-23 (168)
307 PRK14532 adenylate kinase; Pro 97.7 4.2E-05 9.1E-10 67.4 4.4 30 202-231 2-31 (188)
308 cd03283 ABC_MutS-like MutS-lik 97.7 0.00045 9.7E-09 61.9 10.9 25 199-223 24-48 (199)
309 PRK04296 thymidine kinase; Pro 97.7 0.00047 1E-08 61.3 10.7 70 202-271 4-90 (190)
310 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00023 5E-09 64.8 8.9 77 197-273 16-129 (235)
311 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 4.9E-05 1.1E-09 66.5 4.3 29 203-231 2-30 (183)
312 PRK13949 shikimate kinase; Pro 97.6 5E-05 1.1E-09 66.3 4.2 32 201-232 2-33 (169)
313 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00048 1E-08 63.3 10.9 37 197-233 18-57 (237)
314 cd01394 radB RadB. The archaea 97.6 0.00034 7.4E-09 63.1 9.6 37 197-233 16-55 (218)
315 PRK14722 flhF flagellar biosyn 97.6 0.00026 5.7E-09 69.4 9.4 27 198-224 135-161 (374)
316 COG3854 SpoIIIAA ncharacterize 97.6 0.00018 3.9E-09 65.5 7.5 74 198-271 135-230 (308)
317 PF13604 AAA_30: AAA domain; P 97.6 0.00016 3.5E-09 64.6 7.3 99 200-313 18-132 (196)
318 cd01393 recA_like RecA is a b 97.6 0.00034 7.4E-09 63.3 9.4 28 197-224 16-43 (226)
319 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00022 4.7E-09 66.9 8.3 95 161-270 56-160 (264)
320 PRK06217 hypothetical protein; 97.6 6.5E-05 1.4E-09 66.2 4.3 31 202-232 3-33 (183)
321 PRK05973 replicative DNA helic 97.6 0.00061 1.3E-08 62.8 10.8 37 197-233 61-100 (237)
322 PRK14531 adenylate kinase; Pro 97.6 7.8E-05 1.7E-09 65.7 4.5 30 202-231 4-33 (183)
323 cd00227 CPT Chloramphenicol (C 97.6 7.2E-05 1.6E-09 65.4 4.1 36 200-235 2-37 (175)
324 cd02021 GntK Gluconate kinase 97.6 7.5E-05 1.6E-09 63.2 4.1 29 203-231 2-30 (150)
325 COG0703 AroK Shikimate kinase 97.6 6.6E-05 1.4E-09 65.6 3.8 32 201-232 3-34 (172)
326 cd02020 CMPK Cytidine monophos 97.6 7.6E-05 1.7E-09 62.4 4.0 30 203-232 2-31 (147)
327 cd01428 ADK Adenylate kinase ( 97.6 8.2E-05 1.8E-09 65.5 4.3 29 203-231 2-30 (194)
328 TIGR01420 pilT_fam pilus retra 97.5 0.00019 4.1E-09 69.7 7.1 71 199-269 121-205 (343)
329 cd01122 GP4d_helicase GP4d_hel 97.5 0.00032 7E-09 65.4 8.4 37 197-233 27-67 (271)
330 COG0563 Adk Adenylate kinase a 97.5 0.00013 2.8E-09 64.4 5.3 29 202-230 2-30 (178)
331 cd00046 DEXDc DEAD-like helica 97.5 0.00021 4.5E-09 57.9 6.3 24 201-224 1-24 (144)
332 PRK05800 cobU adenosylcobinami 97.5 0.00065 1.4E-08 59.4 9.6 33 202-234 3-35 (170)
333 KOG3347|consensus 97.5 8.7E-05 1.9E-09 63.1 3.9 33 200-232 7-39 (176)
334 PRK14530 adenylate kinase; Pro 97.5 9.9E-05 2.1E-09 66.7 4.6 30 202-231 5-34 (215)
335 cd01130 VirB11-like_ATPase Typ 97.5 0.00014 3E-09 64.4 5.4 72 198-269 23-110 (186)
336 TIGR02782 TrbB_P P-type conjug 97.5 0.00014 3E-09 69.4 5.7 71 199-269 131-214 (299)
337 PTZ00088 adenylate kinase 1; P 97.5 0.00012 2.5E-09 67.3 4.9 34 199-232 5-38 (229)
338 TIGR01313 therm_gnt_kin carboh 97.5 8.5E-05 1.9E-09 63.9 3.8 30 203-232 1-30 (163)
339 PRK05057 aroK shikimate kinase 97.5 0.00013 2.8E-09 63.8 5.0 34 200-233 4-37 (172)
340 COG4619 ABC-type uncharacteriz 97.5 0.0018 3.8E-08 56.6 11.6 28 197-224 26-53 (223)
341 PRK00771 signal recognition pa 97.5 0.0019 4.1E-08 64.8 13.5 36 198-233 93-131 (437)
342 PRK08154 anaerobic benzoate ca 97.5 0.00046 9.9E-09 66.1 8.6 36 197-232 130-165 (309)
343 PRK14974 cell division protein 97.5 0.0014 3E-08 63.5 11.9 73 199-271 139-234 (336)
344 PRK03731 aroL shikimate kinase 97.5 0.00013 2.9E-09 63.1 4.5 32 201-232 3-34 (171)
345 PRK09354 recA recombinase A; P 97.5 0.00084 1.8E-08 65.2 10.4 77 197-273 57-152 (349)
346 PRK13946 shikimate kinase; Pro 97.5 0.00012 2.5E-09 64.7 4.1 34 200-233 10-43 (184)
347 PRK12723 flagellar biosynthesi 97.5 0.00099 2.1E-08 65.7 11.0 26 199-224 173-198 (388)
348 TIGR02525 plasmid_TraJ plasmid 97.5 0.00041 8.9E-09 68.1 8.2 70 201-270 150-236 (372)
349 PRK09376 rho transcription ter 97.5 0.00029 6.2E-09 69.2 6.9 25 201-225 170-194 (416)
350 PRK06547 hypothetical protein; 97.4 0.00015 3.2E-09 63.6 4.4 35 198-232 13-47 (172)
351 PF09848 DUF2075: Uncharacteri 97.4 0.00045 9.8E-09 67.2 8.2 23 202-224 3-25 (352)
352 PRK13900 type IV secretion sys 97.4 0.00039 8.4E-09 67.3 7.5 73 198-270 158-246 (332)
353 COG1102 Cmk Cytidylate kinase 97.4 0.00013 2.8E-09 62.8 3.7 28 203-230 3-30 (179)
354 PF13479 AAA_24: AAA domain 97.4 0.00082 1.8E-08 60.8 9.2 68 200-271 3-80 (213)
355 cd03216 ABC_Carb_Monos_I This 97.4 0.00059 1.3E-08 59.0 7.8 74 197-270 23-111 (163)
356 cd00544 CobU Adenosylcobinamid 97.4 0.0014 3.1E-08 57.2 10.2 70 203-275 2-89 (169)
357 PLN02200 adenylate kinase fami 97.4 0.00019 4E-09 66.1 4.8 34 198-231 41-74 (234)
358 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00016 3.4E-09 63.3 4.2 30 202-231 5-34 (188)
359 cd02027 APSK Adenosine 5'-phos 97.4 0.00061 1.3E-08 58.1 7.7 34 203-236 2-38 (149)
360 cd00984 DnaB_C DnaB helicase C 97.4 0.00083 1.8E-08 61.4 9.1 36 197-232 10-49 (242)
361 PRK14528 adenylate kinase; Pro 97.4 0.00017 3.8E-09 63.8 4.4 31 201-231 2-32 (186)
362 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0025 5.4E-08 59.5 12.4 36 197-232 33-71 (259)
363 smart00487 DEXDc DEAD-like hel 97.4 0.0018 4E-08 55.6 10.7 24 201-224 25-49 (201)
364 KOG1968|consensus 97.4 0.00018 4E-09 77.1 5.1 124 202-339 359-494 (871)
365 cd01128 rho_factor Transcripti 97.4 0.00048 1E-08 64.0 7.3 29 198-226 14-42 (249)
366 PRK02496 adk adenylate kinase; 97.4 0.00016 3.5E-09 63.5 4.0 30 202-231 3-32 (184)
367 cd03243 ABC_MutS_homologs The 97.4 0.0015 3.2E-08 58.4 10.2 24 199-222 28-51 (202)
368 PF14516 AAA_35: AAA-like doma 97.4 0.0015 3.2E-08 63.2 10.9 39 198-236 29-70 (331)
369 PRK13833 conjugal transfer pro 97.4 0.00027 5.8E-09 68.0 5.7 72 198-269 142-225 (323)
370 TIGR02788 VirB11 P-type DNA tr 97.4 0.00047 1E-08 66.0 7.3 73 197-269 141-228 (308)
371 PRK04328 hypothetical protein; 97.4 0.0033 7.2E-08 58.3 12.8 36 197-232 20-58 (249)
372 TIGR01351 adk adenylate kinase 97.4 0.00017 3.8E-09 64.9 4.1 29 203-231 2-30 (210)
373 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.0024 5.2E-08 57.9 11.5 22 201-222 30-51 (213)
374 PRK11889 flhF flagellar biosyn 97.4 0.0019 4.1E-08 63.7 11.4 96 171-271 217-332 (436)
375 PRK14527 adenylate kinase; Pro 97.3 0.00019 4.1E-09 63.6 4.0 34 198-231 4-37 (191)
376 TIGR00416 sms DNA repair prote 97.3 0.0018 4E-08 65.2 11.5 77 197-273 91-184 (454)
377 PRK00279 adk adenylate kinase; 97.3 0.00021 4.7E-09 64.5 4.3 30 202-231 2-31 (215)
378 COG1373 Predicted ATPase (AAA+ 97.3 0.0016 3.4E-08 64.7 10.7 69 202-272 39-107 (398)
379 PLN02674 adenylate kinase 97.3 0.00025 5.5E-09 65.6 4.7 34 198-231 29-62 (244)
380 PF01583 APS_kinase: Adenylyls 97.3 0.00094 2E-08 57.6 7.9 40 200-239 2-44 (156)
381 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00063 1.4E-08 62.9 7.3 34 203-236 2-38 (249)
382 PRK04040 adenylate kinase; Pro 97.3 0.00026 5.7E-09 62.9 4.4 32 200-231 2-35 (188)
383 PRK13894 conjugal transfer ATP 97.3 0.00041 8.9E-09 66.8 5.8 73 198-270 146-230 (319)
384 TIGR02533 type_II_gspE general 97.3 0.0011 2.3E-08 67.5 9.0 94 161-270 218-322 (486)
385 COG4088 Predicted nucleotide k 97.3 0.0011 2.4E-08 59.5 7.8 24 202-225 3-26 (261)
386 PF00406 ADK: Adenylate kinase 97.3 0.00021 4.4E-09 60.8 3.2 32 205-238 1-32 (151)
387 PRK13764 ATPase; Provisional 97.3 0.00055 1.2E-08 70.9 6.8 72 198-270 255-335 (602)
388 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0044 9.6E-08 56.1 12.1 37 197-233 13-52 (224)
389 TIGR00064 ftsY signal recognit 97.3 0.011 2.3E-07 55.8 14.9 36 198-233 70-108 (272)
390 PHA02530 pseT polynucleotide k 97.2 0.00097 2.1E-08 63.1 7.8 31 201-231 3-34 (300)
391 COG5271 MDN1 AAA ATPase contai 97.2 0.0013 2.8E-08 73.5 9.0 124 199-334 887-1035(4600)
392 PF13238 AAA_18: AAA domain; P 97.2 0.00026 5.6E-09 57.6 3.0 22 203-224 1-22 (129)
393 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0035 7.6E-08 56.9 10.8 36 197-232 17-55 (229)
394 PRK13851 type IV secretion sys 97.2 0.00071 1.5E-08 65.8 6.5 72 198-269 160-246 (344)
395 PRK09519 recA DNA recombinatio 97.2 0.0031 6.7E-08 67.1 11.7 77 197-273 57-152 (790)
396 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0019 4.1E-08 55.2 8.5 72 198-270 23-109 (157)
397 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0045 9.7E-08 55.3 11.1 21 201-221 29-49 (200)
398 PRK04182 cytidylate kinase; Pr 97.2 0.0004 8.7E-09 60.2 4.1 30 202-231 2-31 (180)
399 PF05272 VirE: Virulence-assoc 97.2 0.00011 2.4E-09 65.8 0.6 106 198-326 50-163 (198)
400 PRK06696 uridine kinase; Valid 97.2 0.00094 2E-08 60.7 6.7 39 198-236 20-61 (223)
401 PRK10436 hypothetical protein; 97.2 0.0013 2.8E-08 66.4 8.2 95 161-270 194-298 (462)
402 PRK01184 hypothetical protein; 97.2 0.0004 8.6E-09 61.0 4.1 29 202-231 3-31 (184)
403 PF13245 AAA_19: Part of AAA d 97.2 0.00071 1.5E-08 51.2 4.8 23 202-224 12-35 (76)
404 PRK10416 signal recognition pa 97.2 0.013 2.8E-07 56.4 14.6 35 199-233 113-150 (318)
405 PF13481 AAA_25: AAA domain; P 97.2 0.001 2.3E-08 58.4 6.6 76 199-274 31-156 (193)
406 PF04665 Pox_A32: Poxvirus A32 97.1 0.0076 1.6E-07 55.6 12.3 120 197-331 10-155 (241)
407 PRK06581 DNA polymerase III su 97.1 0.0039 8.4E-08 57.4 10.2 123 198-336 13-150 (263)
408 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00047 1E-08 59.3 4.1 29 203-231 3-31 (171)
409 TIGR02655 circ_KaiC circadian 97.1 0.0054 1.2E-07 62.4 12.3 77 197-273 260-367 (484)
410 cd03228 ABCC_MRP_Like The MRP 97.1 0.0025 5.3E-08 55.4 8.6 28 197-224 25-52 (171)
411 PRK13695 putative NTPase; Prov 97.1 0.0023 5E-08 55.7 8.4 23 202-224 2-24 (174)
412 PRK04301 radA DNA repair and r 97.1 0.0022 4.8E-08 61.5 9.0 39 197-235 99-146 (317)
413 PF06414 Zeta_toxin: Zeta toxi 97.1 0.0015 3.3E-08 58.2 7.4 41 198-238 13-54 (199)
414 cd02019 NK Nucleoside/nucleoti 97.1 0.00063 1.4E-08 50.2 4.1 22 203-224 2-23 (69)
415 smart00534 MUTSac ATPase domai 97.1 0.0063 1.4E-07 53.7 11.2 19 203-221 2-20 (185)
416 COG2804 PulE Type II secretory 97.1 0.0015 3.3E-08 65.6 7.9 95 161-271 234-339 (500)
417 PF00448 SRP54: SRP54-type pro 97.1 0.006 1.3E-07 54.6 11.0 71 200-270 1-94 (196)
418 PRK14526 adenylate kinase; Pro 97.1 0.00054 1.2E-08 62.1 4.2 29 202-230 2-30 (211)
419 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0045 9.8E-08 56.5 10.3 25 198-222 29-53 (222)
420 cd01125 repA Hexameric Replica 97.1 0.0069 1.5E-07 55.6 11.6 21 203-223 4-24 (239)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0017 3.6E-08 55.1 6.8 73 197-270 23-99 (144)
422 COG4178 ABC-type uncharacteriz 97.1 0.0026 5.7E-08 65.6 9.4 28 197-224 416-443 (604)
423 PRK14737 gmk guanylate kinase; 97.1 0.0011 2.3E-08 58.9 5.9 26 199-224 3-28 (186)
424 TIGR02236 recomb_radA DNA repa 97.1 0.0032 6.8E-08 60.2 9.5 39 197-235 92-139 (310)
425 TIGR02538 type_IV_pilB type IV 97.1 0.0017 3.6E-08 67.3 8.1 94 162-270 293-396 (564)
426 PRK05541 adenylylsulfate kinas 97.1 0.00086 1.9E-08 58.4 5.1 39 198-236 5-46 (176)
427 cd03247 ABCC_cytochrome_bd The 97.1 0.0078 1.7E-07 52.6 11.2 28 197-224 25-52 (178)
428 PRK04841 transcriptional regul 97.1 0.0083 1.8E-07 65.1 13.7 33 199-232 31-63 (903)
429 cd03115 SRP The signal recogni 97.1 0.0025 5.4E-08 55.3 8.0 32 203-234 3-37 (173)
430 PRK08233 hypothetical protein; 97.0 0.00071 1.5E-08 58.8 4.4 32 201-232 4-36 (182)
431 COG1936 Predicted nucleotide k 97.0 0.00051 1.1E-08 59.8 3.4 30 202-232 2-31 (180)
432 TIGR03499 FlhF flagellar biosy 97.0 0.0034 7.4E-08 59.3 9.3 37 198-234 192-233 (282)
433 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0016 3.5E-08 54.7 6.2 30 198-227 20-49 (133)
434 PRK14529 adenylate kinase; Pro 97.0 0.00083 1.8E-08 61.4 4.9 29 202-230 2-30 (223)
435 PF08298 AAA_PrkA: PrkA AAA do 97.0 0.0022 4.9E-08 62.0 8.1 61 163-231 58-120 (358)
436 PRK00889 adenylylsulfate kinas 97.0 0.003 6.5E-08 54.9 8.2 37 199-235 3-42 (175)
437 COG4608 AppF ABC-type oligopep 97.0 0.0021 4.6E-08 59.8 7.5 76 197-272 36-140 (268)
438 TIGR00767 rho transcription te 97.0 0.0019 4E-08 63.8 7.4 28 198-225 166-193 (415)
439 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0019 4.2E-08 62.3 7.4 39 200-238 162-200 (325)
440 PRK10078 ribose 1,5-bisphospho 97.0 0.00071 1.5E-08 59.7 4.1 30 201-230 3-32 (186)
441 TIGR02238 recomb_DMC1 meiotic 97.0 0.0049 1.1E-07 59.2 10.0 26 197-222 93-118 (313)
442 cd03238 ABC_UvrA The excision 97.0 0.0066 1.4E-07 53.4 10.1 27 197-223 18-44 (176)
443 PRK12724 flagellar biosynthesi 97.0 0.013 2.8E-07 58.4 13.0 26 199-224 222-247 (432)
444 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0062 1.3E-07 52.5 9.7 23 200-222 21-43 (162)
445 cd03246 ABCC_Protease_Secretio 97.0 0.0036 7.9E-08 54.4 8.3 27 198-224 26-52 (173)
446 PF13521 AAA_28: AAA domain; P 97.0 0.00061 1.3E-08 58.6 3.4 34 203-237 2-35 (163)
447 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0012 2.6E-08 58.1 5.2 72 198-270 23-100 (177)
448 PF08433 KTI12: Chromatin asso 97.0 0.0017 3.6E-08 61.1 6.4 69 203-272 4-83 (270)
449 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0086 1.9E-07 53.9 10.8 23 200-222 29-51 (204)
450 PLN02199 shikimate kinase 97.0 0.00091 2E-08 63.4 4.6 34 199-232 101-134 (303)
451 PF13086 AAA_11: AAA domain; P 97.0 0.0006 1.3E-08 61.0 3.3 23 202-224 19-41 (236)
452 COG0467 RAD55 RecA-superfamily 96.9 0.0091 2E-07 55.5 11.2 97 197-295 20-158 (260)
453 PF08423 Rad51: Rad51; InterP 96.9 0.0024 5.3E-08 59.5 7.3 113 198-312 36-186 (256)
454 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0083 1.8E-07 51.9 10.1 28 197-224 24-51 (166)
455 PF01745 IPT: Isopentenyl tran 96.9 0.0014 3.1E-08 59.1 5.2 38 202-239 3-40 (233)
456 PF02562 PhoH: PhoH-like prote 96.9 0.0027 5.9E-08 57.2 7.0 23 202-224 21-43 (205)
457 PRK12339 2-phosphoglycerate ki 96.9 0.0012 2.6E-08 59.1 4.7 30 200-229 3-32 (197)
458 PRK12726 flagellar biosynthesi 96.9 0.0048 1E-07 60.6 9.1 52 169-224 179-230 (407)
459 PLN03187 meiotic recombination 96.9 0.0059 1.3E-07 59.4 9.7 26 197-222 123-148 (344)
460 PLN02459 probable adenylate ki 96.9 0.0011 2.5E-08 61.7 4.5 31 201-231 30-60 (261)
461 PRK10867 signal recognition pa 96.9 0.0062 1.4E-07 60.9 10.0 74 198-271 98-195 (433)
462 PF05970 PIF1: PIF1-like helic 96.9 0.0077 1.7E-07 59.0 10.5 28 198-225 20-47 (364)
463 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.015 3.2E-07 50.4 11.0 23 202-224 4-26 (159)
464 PRK08099 bifunctional DNA-bind 96.9 0.0031 6.7E-08 62.6 7.7 32 200-231 219-250 (399)
465 PRK12338 hypothetical protein; 96.9 0.0012 2.7E-08 63.2 4.6 31 199-229 3-33 (319)
466 KOG0058|consensus 96.8 0.0062 1.4E-07 63.5 9.9 35 190-224 483-518 (716)
467 TIGR02768 TraA_Ti Ti-type conj 96.8 0.0065 1.4E-07 65.0 10.4 71 201-271 369-451 (744)
468 COG2274 SunT ABC-type bacterio 96.8 0.0064 1.4E-07 64.5 10.2 27 198-224 497-523 (709)
469 TIGR02655 circ_KaiC circadian 96.8 0.016 3.5E-07 58.9 12.7 38 197-234 18-59 (484)
470 COG2874 FlaH Predicted ATPases 96.8 0.014 3E-07 52.7 10.6 129 186-325 13-178 (235)
471 PTZ00035 Rad51 protein; Provis 96.8 0.0078 1.7E-07 58.4 9.8 27 197-223 115-141 (337)
472 PLN02165 adenylate isopentenyl 96.8 0.0014 3.1E-08 63.1 4.5 37 198-234 41-77 (334)
473 TIGR01448 recD_rel helicase, p 96.8 0.0048 1E-07 65.7 8.9 101 201-317 339-458 (720)
474 PF01443 Viral_helicase1: Vira 96.8 0.00065 1.4E-08 61.5 2.1 22 203-224 1-22 (234)
475 TIGR01425 SRP54_euk signal rec 96.8 0.013 2.8E-07 58.5 11.4 74 198-271 98-194 (429)
476 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.8 0.0049 1.1E-07 55.0 7.7 34 201-234 39-79 (205)
477 COG1066 Sms Predicted ATP-depe 96.8 0.0062 1.3E-07 59.8 8.7 79 197-275 90-184 (456)
478 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0054 1.2E-07 59.0 8.3 26 197-222 93-118 (316)
479 TIGR02322 phosphon_PhnN phosph 96.8 0.0012 2.5E-08 57.6 3.5 24 202-225 3-26 (179)
480 PRK09302 circadian clock prote 96.8 0.018 4E-07 58.8 12.8 77 197-273 270-377 (509)
481 PF12780 AAA_8: P-loop contain 96.8 0.0052 1.1E-07 57.7 8.0 88 167-268 10-98 (268)
482 PF08303 tRNA_lig_kinase: tRNA 96.8 0.021 4.6E-07 49.5 11.1 62 206-271 5-66 (168)
483 PF00488 MutS_V: MutS domain V 96.8 0.0095 2.1E-07 54.8 9.6 24 201-224 44-67 (235)
484 PRK12727 flagellar biosynthesi 96.8 0.028 6.1E-07 57.5 13.7 28 197-224 347-374 (559)
485 PRK14730 coaE dephospho-CoA ki 96.8 0.0028 6E-08 56.6 5.9 38 202-241 3-40 (195)
486 PRK09302 circadian clock prote 96.8 0.013 2.8E-07 60.0 11.5 77 197-273 28-144 (509)
487 TIGR02524 dot_icm_DotB Dot/Icm 96.7 0.0029 6.2E-08 61.9 6.3 72 199-270 133-223 (358)
488 PRK00300 gmk guanylate kinase; 96.7 0.0018 3.9E-08 57.6 4.6 28 198-225 3-30 (205)
489 PRK09825 idnK D-gluconate kina 96.7 0.0019 4.2E-08 56.7 4.5 29 201-229 4-32 (176)
490 PRK04220 2-phosphoglycerate ki 96.7 0.0038 8.2E-08 59.4 6.6 31 198-228 90-120 (301)
491 PRK05480 uridine/cytidine kina 96.7 0.0025 5.5E-08 57.1 5.3 28 198-225 4-31 (209)
492 PRK13808 adenylate kinase; Pro 96.7 0.0016 3.4E-08 62.9 4.0 30 202-231 2-31 (333)
493 PRK00091 miaA tRNA delta(2)-is 96.7 0.002 4.4E-08 61.6 4.8 34 200-233 4-37 (307)
494 TIGR00959 ffh signal recogniti 96.7 0.021 4.6E-07 57.1 12.1 74 198-271 97-194 (428)
495 PRK05703 flhF flagellar biosyn 96.7 0.021 4.5E-07 57.2 12.1 36 199-234 220-260 (424)
496 PRK00023 cmk cytidylate kinase 96.7 0.013 2.8E-07 53.5 9.8 32 201-232 5-36 (225)
497 cd02022 DPCK Dephospho-coenzym 96.7 0.002 4.3E-08 56.6 4.2 29 203-232 2-30 (179)
498 cd02024 NRK1 Nicotinamide ribo 96.7 0.0018 4E-08 57.5 4.0 30 203-232 2-32 (187)
499 COG2805 PilT Tfp pilus assembl 96.7 0.0057 1.2E-07 57.9 7.3 72 200-271 124-210 (353)
500 PLN03186 DNA repair protein RA 96.7 0.014 3E-07 56.7 10.3 26 197-222 120-145 (342)
No 1
>KOG0733|consensus
Probab=100.00 E-value=4e-43 Score=345.82 Aligned_cols=197 Identities=38% Similarity=0.670 Sum_probs=187.2
Q ss_pred CCCCCHHHHHHhcCccCCCC--------cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCC
Q psy15087 140 GNKLNTHELKIAANLIVPEE--------INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGC 211 (341)
Q Consensus 140 ~~~~~~~~~~~~~~~v~p~~--------~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGt 211 (341)
+..+..++|..|...++|+. |+++|+||+|+++++.+|..++.+|.++|+.|+..| +..|.||||||||||
T Consensus 478 ~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lG-i~~PsGvLL~GPPGC 556 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALG-IDAPSGVLLCGPPGC 556 (802)
T ss_pred cceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhC-CCCCCceEEeCCCCc
Confidence 35577789999999999953 789999999999999999999999999999999999 688999999999999
Q ss_pred CHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHH
Q psy15087 212 GKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFL 291 (341)
Q Consensus 212 GKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll 291 (341)
|||+||||+|++.+++|+.+.+++++++|+|+++..++.+|+.|+.+.||||||||+|+|.+.|+......+.+++++||
T Consensus 557 GKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLL 636 (802)
T KOG0733|consen 557 GKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLL 636 (802)
T ss_pred cHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 292 SKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 292 ~~ld~~~~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++|||+.. +.+|+||||||+|+.||+|++| ||++.++|++|+.++|
T Consensus 637 tElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 637 TELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred HHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999976 4569999999999999999999 9999999999999887
No 2
>KOG0730|consensus
Probab=100.00 E-value=3.6e-43 Score=350.04 Aligned_cols=179 Identities=44% Similarity=0.762 Sum_probs=172.5
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++|+||+|++++|++|++.|.+|+++|+.|.+.| +.+|+|||||||||||||++||++|++++++|+.+.++++.
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 45799999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~l 317 (341)
++|+|++++.++.+|..|+..+||||||||||.+.+.|++....+.++++++||++|||+... .+|+|||+||+|+.|
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMI 583 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc--CcEEEEeccCChhhc
Confidence 999999999999999999999999999999999999998777799999999999999999875 469999999999999
Q ss_pred cHHHHc--cCCceEEecCCCcCCC
Q psy15087 318 DPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 318 d~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|+|++| ||++.++|++||.+.|
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHH
Confidence 999999 9999999999999876
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-43 Score=327.15 Aligned_cols=179 Identities=39% Similarity=0.653 Sum_probs=165.5
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++|+||+|+++++++|+++++.|+.+|++|.+.| +.||+|||||||||||||+||||+|++.++.|+.+.+|++.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G-I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG-IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC-CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 56789999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
.+|+|++.+.++.+|..|+..+||||||||||+++..|.. ++..-..+.+-+|+++|||+... .++-||+|||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCc
Confidence 9999999999999999999999999999999999988843 23333444556889999999874 569999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.||||++| ||++.|+||+||.+.|
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHH
Confidence 999999999 9999999999999876
No 4
>KOG0737|consensus
Probab=100.00 E-value=1.3e-42 Score=327.17 Aligned_cols=219 Identities=47% Similarity=0.797 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhcCcc-----cCCCCCHHHHHHhcCccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCC
Q psy15087 122 LLAITTAYEKLKKVGLD-----VGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGL 196 (341)
Q Consensus 122 ~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~ 196 (341)
+++.......+++.+.. .....++++..++..++.|.++.++|+||+|++.++++|++.+..|+.+|++|...++
T Consensus 44 ~eS~~~~~~~l~~~~~~~s~k~~~i~~ne~E~~i~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~L 123 (386)
T KOG0737|consen 44 RESLEKTEELLKNLEAELSLKYRIIQKNEYEKRIASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKL 123 (386)
T ss_pred HHHHHHHHHHHHhhhhccchhhhhhhhhHHHHHhhhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhccccc
Confidence 34444445555555442 3456889999999999999999999999999999999999999999999999998888
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS 276 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~ 276 (341)
.++++|||||||||||||++|+++|.+.+++|+.+..+.++++|+|+.++.++.+|..|.+.+|+||||||+|.+.+.|+
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 277 SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 277 ~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
+.++++...+.++|+..|||+.++.+.+|+|+||||+|.++|+|++||++++++|++|+.++|.
T Consensus 204 s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~ 267 (386)
T KOG0737|consen 204 STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRR 267 (386)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHH
Confidence 9999999999999999999999998889999999999999999999999999999999999874
No 5
>KOG0738|consensus
Probab=100.00 E-value=1.6e-40 Score=313.76 Aligned_cols=186 Identities=42% Similarity=0.626 Sum_probs=172.5
Q ss_pred CccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 153 NLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 153 ~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.-+....+++.|+||.|++++|+-|+++|..|+.+|+.|+.. .+|.+|||++||||||||+||||+|.+++..|++|+
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi--rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI--RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc--ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 344556778999999999999999999999999999999864 489999999999999999999999999999999999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC-CCchHHHHHHHHHHHHHhcCCCCCCC--CCEEEEE
Q psy15087 233 ISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS-SSDHEATAQLKSIFLSKWDGLTTDKN--IDIIIMG 309 (341)
Q Consensus 233 ~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~-~~~~~~~~~i~~~ll~~ld~~~~~~~--~~viVIa 309 (341)
.+.+.++|-|++++.++-+|..|+.++|++|||||||.|+..|+ ++++++++++.++||.+|||+..... ..|+|++
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 99999999999999999999999999999999999999998886 56899999999999999999876442 2388999
Q ss_pred EeCCCCCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 310 ATNRPDDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 310 tTN~~~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
+||.||+||+|++|||.++|+||+|+.+.|+
T Consensus 358 ATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~ 388 (491)
T KOG0738|consen 358 ATNFPWDIDEALRRRLEKRIYIPLPDAEARS 388 (491)
T ss_pred ccCCCcchHHHHHHHHhhheeeeCCCHHHHH
Confidence 9999999999999999999999999998874
No 6
>KOG0736|consensus
Probab=100.00 E-value=1.7e-39 Score=326.84 Aligned_cols=184 Identities=36% Similarity=0.643 Sum_probs=170.8
Q ss_pred CccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 153 NLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 153 ~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.+-.|.-|+++|+||||++++|.+|.+.+..|+++|++|.. | .++.+|||||||||||||.+|||+|.++...|+++.
T Consensus 660 aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-g-lrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK 737 (953)
T KOG0736|consen 660 AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-G-LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK 737 (953)
T ss_pred hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-c-ccccceeEEECCCCCchHHHHHHHHhhceeeEEeec
Confidence 35567889999999999999999999999999999999975 3 477889999999999999999999999999999999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC--CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 233 ISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS--SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 233 ~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~--~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
++++.++|+|++++.++++|+.|+..+|||||+||+|.+++.|+. .....++|+..+|+.+|||+.......++||||
T Consensus 738 GPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 738 GPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred CHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 999999999999999999999999999999999999999998853 445689999999999999999766778999999
Q ss_pred eCCCCCCcHHHHc--cCCceEEecCCCcCC
Q psy15087 311 TNRPDDIDPAIAR--RMPKKYHIKLPLLSS 338 (341)
Q Consensus 311 TN~~~~ld~al~r--Rf~~~i~i~lP~~e~ 338 (341)
||||+.|||+++| ||++-+++.+++-++
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHH
Confidence 9999999999999 999999999987554
No 7
>KOG0739|consensus
Probab=100.00 E-value=6e-40 Score=300.90 Aligned_cols=185 Identities=44% Similarity=0.693 Sum_probs=175.2
Q ss_pred CccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 153 NLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 153 ~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.-|..+.|++.|+||.|++.+|+.|+++|+.|++.|++|..-. .|.+|+||||||||||+.||+|+|.+.+..|++++
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR--~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR--KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC--CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 4556678899999999999999999999999999999998544 78999999999999999999999999999999999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 233 ISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 233 ~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
.++++++|.|++++.++++|..|+.+.|+||||||||.+++.|+....++++++..+|+.+|.|+..+. .+++|+++||
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~-~gvLVLgATN 277 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN-DGVLVLGATN 277 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC-CceEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998754 5899999999
Q ss_pred CCCCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 313 RPDDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 313 ~~~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
-||.||.||+|||.++|+||+|+...|.
T Consensus 278 iPw~LDsAIRRRFekRIYIPLPe~~AR~ 305 (439)
T KOG0739|consen 278 IPWVLDSAIRRRFEKRIYIPLPEAHARA 305 (439)
T ss_pred CchhHHHHHHHHhhcceeccCCcHHHhh
Confidence 9999999999999999999999987763
No 8
>KOG0734|consensus
Probab=100.00 E-value=6.2e-37 Score=298.30 Aligned_cols=183 Identities=36% Similarity=0.614 Sum_probs=171.5
Q ss_pred CccCCCCc-CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 153 NLIVPEEI-NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 153 ~~v~p~~~-~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+.|+.. +++|+||-|.+++|++|.+++.+ ++.|..|.++| -+-|+||||.||||||||+||||+|.+.++||++.
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cccChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 45556544 88999999999999999999876 89999999988 48899999999999999999999999999999999
Q ss_pred echhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 232 DISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 232 ~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT 311 (341)
.++++-+.|+|...++++.+|..|+.+.||||||||||++.++|.+.+.....+.+++|+.+|||+..+. +|+||++|
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe--GiIvigAT 446 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE--GIIVIGAT 446 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC--ceEEEecc
Confidence 9999999999999999999999999999999999999999999988887789999999999999998754 59999999
Q ss_pred CCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 312 NRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 312 N~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|.|+.||+|+.| ||++++.||.||...|
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR 476 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGR 476 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccH
Confidence 999999999999 9999999999999876
No 9
>KOG0733|consensus
Probab=100.00 E-value=7.8e-37 Score=301.49 Aligned_cols=179 Identities=35% Similarity=0.670 Sum_probs=170.7
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
.+++|.||+|++....+|.+.+.. +.+|+.|...| +.||+|||||||||||||+||+++|.++++||+.++++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 388999999999999999999988 99999999999 6999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCC--CCEEEEEEeCCCCCC
Q psy15087 240 LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKN--IDIIIMGATNRPDDI 317 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~--~~viVIatTN~~~~l 317 (341)
+.|++++.++.+|..|....|||+||||||++.+.|..+..+..++++.+|++.||++..... .+|+||||||+|+.|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 999999999999999999999999999999999999998888899999999999999877643 579999999999999
Q ss_pred cHHHHc--cCCceEEecCCCcCCCC
Q psy15087 318 DPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 318 d~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
|++|+| ||++.|.+.+|+..+|.
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~ 367 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETARE 367 (802)
T ss_pred CHHHhccccccceeeecCCchHHHH
Confidence 999999 99999999999998873
No 10
>KOG0727|consensus
Probab=100.00 E-value=9.4e-36 Score=268.21 Aligned_cols=181 Identities=37% Similarity=0.667 Sum_probs=167.9
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.+.+++.||+|++-.|++++++++.|+.+.++|++.| +.||+|||+|||||||||+||+++|+...+.|+.+.++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qig-idpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45789999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC---CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS---SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~---~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
.+|.|+....++.+|..|+.+.|+||||||+|.+..+|- .+......+++-+|++.|||+... .++-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 999999999999999999999999999999999987763 344455667788899999999874 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSFSL 341 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R~~ 341 (341)
+.+||+++| |+++.|++|+||..|+.|
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrl 333 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRL 333 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhh
Confidence 999999999 999999999999988764
No 11
>KOG0729|consensus
Probab=100.00 E-value=2.1e-35 Score=267.64 Aligned_cols=179 Identities=34% Similarity=0.623 Sum_probs=164.8
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++++||+|..+.++.|++.++.|+.+|+.|-.+| +.||+|||+|||||||||.+|+|+|++.+++|+.+-++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 46789999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC----CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS----SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~----~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
.+|+|+....++.+|+.|+..+.||||+||||++.+.|- +++++..+.++ ++++++||+... .++-|+.+||+
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtml-eli~qldgfdpr--gnikvlmatnr 325 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGFDPR--GNIKVLMATNR 325 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHH-HHHHhccCCCCC--CCeEEEeecCC
Confidence 999999999999999999999999999999999988773 34555555444 678899999764 56999999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
|+.+|||++| |+++.++|.+||.+.|.
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt 354 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRT 354 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccc
Confidence 9999999999 99999999999999874
No 12
>KOG0735|consensus
Probab=100.00 E-value=1.9e-34 Score=288.38 Aligned_cols=213 Identities=33% Similarity=0.535 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCC---------CCcCcccccccCcHHHHHHHHHHhhchhhchhHH
Q psy15087 121 VLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVP---------EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLL 191 (341)
Q Consensus 121 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p---------~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~ 191 (341)
|+.++..|+ +.+.+.... .++.+.+..++.-..| ......|.||+|+.++|+.|.+.+++|.++|..|
T Consensus 617 VeRai~~a~--leris~~~k-lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if 693 (952)
T KOG0735|consen 617 VERAIHEAF--LERISNGPK-LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIF 693 (952)
T ss_pred HHHHHHHHH--HHHhccCcc-cchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHH
Confidence 555655555 344443323 5777777766544444 2224789999999999999999999999999999
Q ss_pred hhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 192 KESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 192 ~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
...+ ++-+.|+|||||||||||.||.++|..++..|+++.++++.++|+|.+++.++.+|..|+..+|||+|+||+|.+
T Consensus 694 ~~~p-lr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 694 ANCP-LRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred hhCC-cccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 9988 588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 272 LRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 272 ~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+++|+........|+.++|+++|||...- .+|.|+|+|.||+.||||++| |+++.++.++|+..+|
T Consensus 773 APkRGhDsTGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 773 APKRGHDSTGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred CcccCCCCCCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 99999888889999999999999998764 469999999999999999999 9999999999999876
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=284.23 Aligned_cols=197 Identities=39% Similarity=0.663 Sum_probs=180.1
Q ss_pred CCCCCHHHHHHhcCccCC------CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCH
Q psy15087 140 GNKLNTHELKIAANLIVP------EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGK 213 (341)
Q Consensus 140 ~~~~~~~~~~~~~~~v~p------~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGK 213 (341)
....+..++..+...+.| ..+.++|++++|++.+++.+++.+.+|+.+++.|...+ ..+++|+||||||||||
T Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGK 289 (494)
T COG0464 211 YIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGK 289 (494)
T ss_pred cccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCH
Confidence 345666777666655544 57789999999999999999999999999999998877 58889999999999999
Q ss_pred HHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 214 TMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 214 T~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
|+||+++|.+++.+|+.+..+++.++|+|++++.++.+|..|++.+||||||||+|++.+.++........+++++++.+
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~ 369 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE 369 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877776678999999999
Q ss_pred hcCCCCCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 294 WDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 294 ld~~~~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|+++.... +|+||+|||+|+.+|++++| ||+..++|++||.++|
T Consensus 370 ~d~~e~~~--~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 370 LDGIEKAE--GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred hcCCCccC--ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH
Confidence 99987654 59999999999999999999 9999999999999876
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=258.14 Aligned_cols=173 Identities=30% Similarity=0.536 Sum_probs=154.7
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
.+.+|+||+|++++|+.-.-++. .+.+|+.|.++ .|++||||||||||||++|+++|++.+.||+.+++.++.+.
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~W----APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIME-YLENPERFGDW----APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHH-HhhChHHhccc----CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 37899999999999998765554 48999999864 58999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC-chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 240 LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS-DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~-~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
++|+..+.++.++..|++.+|||+||||+|++.-+|.-. .......+.+.|+++|||+..+ .+|+.||+||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC--CceEEEeecCChhhcC
Confidence 999999999999999999999999999999998766432 1223456789999999999864 4699999999999999
Q ss_pred HHHHccCCceEEecCCCcCCC
Q psy15087 319 PAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~rRf~~~i~i~lP~~e~R 339 (341)
+++++||...|+|.+|+.++|
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr 289 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEER 289 (368)
T ss_pred HHHHhhhhheeeeeCCChHHH
Confidence 999999999999999999887
No 15
>KOG0731|consensus
Probab=100.00 E-value=1.4e-33 Score=288.71 Aligned_cols=179 Identities=39% Similarity=0.629 Sum_probs=165.9
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
....++|.||.|++++|++|.++|.. |++|+.|.+.| .+.|+|+||+||||||||+||||+|.+.++||+.++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34468999999999999999999876 89999999999 79999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC----CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS----SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~----~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
+.++|....+++.+|..|+...||||||||||.+...|. .+.+...+..+++|+.+|||+... ..++|+++||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999999999999999999999999999999999998884 244556677799999999999875 56999999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
++.+|+|++| ||++.+.+++|+...|.
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~ 488 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRA 488 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhH
Confidence 9999999999 99999999999998873
No 16
>KOG0652|consensus
Probab=100.00 E-value=1.3e-33 Score=255.39 Aligned_cols=191 Identities=33% Similarity=0.618 Sum_probs=168.3
Q ss_pred HHHHHHhcCccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 145 THELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 145 ~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+++.....-.+ .+.|..+++||+|++.++++|.+++..|+.+++.|..+| ++||+|||+|||||||||++|+++|...
T Consensus 152 eyDsrVkaMev-DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg-i~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 152 EYDSRVKAMEV-DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG-IRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred hhhhhcceeee-ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcC-CCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 44444333333 466788999999999999999999999999999999999 7999999999999999999999999999
Q ss_pred CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC----CchHHHHHHHHHHHHHhcCCCCC
Q psy15087 225 NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS----SDHEATAQLKSIFLSKWDGLTTD 300 (341)
Q Consensus 225 ~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~----~~~~~~~~i~~~ll~~ld~~~~~ 300 (341)
+..|..+.++++...|+|+..+.++..|..|+...|+||||||+|.+..+|.. ++.+..+. .-+|++++||+.+.
T Consensus 230 ~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRT-MLELLNQLDGFss~ 308 (424)
T KOG0652|consen 230 NATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRT-MLELLNQLDGFSSD 308 (424)
T ss_pred cchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHH-HHHHHHhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999887743 33334333 44788899999876
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 301 KNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 301 ~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
. .+-||++||+.+.+||+++| |+++.|+||.|+.+.|.
T Consensus 309 ~--~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRa 348 (424)
T KOG0652|consen 309 D--RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARA 348 (424)
T ss_pred c--ceEEEeecccccccCHHHhhcccccccccCCCCChHHHH
Confidence 5 49999999999999999999 99999999999998773
No 17
>KOG0726|consensus
Probab=100.00 E-value=1.6e-33 Score=258.07 Aligned_cols=179 Identities=36% Similarity=0.624 Sum_probs=162.6
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
..+..+|+||+|+++++++|+++++.|+.+|+.|...| ++||+||+|||+||||||.||+|+|+...+.|+.+-++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 45678999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC---CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS---SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~---~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
.+|.|+..+.++++|+.|...+|+|+||||||++..+|- +++.....+..-+|++++||+.+. ..+-||.+||+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnri 334 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRI 334 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccc
Confidence 999999999999999999999999999999999988773 233333333444788999999874 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.+||++.| |+++.|.|++||...+
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~Tk 361 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTK 361 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhh
Confidence 999999999 9999999999998765
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.7e-32 Score=285.64 Aligned_cols=241 Identities=32% Similarity=0.534 Sum_probs=196.2
Q ss_pred hcccCCcccchhhccCCCCCch-hhHHHHHHHHHHHHHhcCcc------------cCCCCCHHHHHHhcCccCCCC----
Q psy15087 97 MATHQDTNHVQCYFSDPSGTST-FNVLLAITTAYEKLKKVGLD------------VGNKLNTHELKIAANLIVPEE---- 159 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~v~p~~---- 159 (341)
+..+++...++..+..++|..- ..+..+...+..++...+.. ....++..++..+...+.|+.
T Consensus 364 l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~ 443 (733)
T TIGR01243 364 LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREV 443 (733)
T ss_pred CccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchh
Confidence 3446666666666655555421 12334444444443221110 123456677777777776653
Q ss_pred ----cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 160 ----INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 160 ----~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
++++|+||+|++.+|+.|.+.+.+|+.+++.+...| ..+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 444 ~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~ 522 (733)
T TIGR01243 444 LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG-IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPE 522 (733)
T ss_pred hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 477999999999999999999999999999999998 588999999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC-chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS-DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~-~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
+.++|+|++++.++.+|..|+...||||||||+|.+++.++.. ......+++++|+..||++... .+++||+|||+|
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~ 600 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRP 600 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCCh
Confidence 9999999999999999999999999999999999999877643 3446778899999999998653 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
+.||++++| ||+..+++++|+.++|.
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~ 628 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARK 628 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHH
Confidence 999999998 99999999999988773
No 19
>KOG0728|consensus
Probab=100.00 E-value=1.6e-32 Score=247.05 Aligned_cols=177 Identities=36% Similarity=0.623 Sum_probs=161.1
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
-|+.+++-|+|++.+++++++.+..|.++|++|..+| +..|+|+|||||||||||.||+++|....+.|+.++++++..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG-IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC-CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 3577899999999999999999999999999999999 588999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC----CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS----SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~----~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
+|+|+....++.+|..|+.++|+|||+||||.+...|.. ++.+..+. .-+|++++||+.... ++-||.+||+.
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrt-mlellnqldgfeatk--nikvimatnri 296 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRT-MLELLNQLDGFEATK--NIKVIMATNRI 296 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHH-HHHHHHhcccccccc--ceEEEEecccc
Confidence 999999999999999999999999999999999887742 23344443 447889999998754 59999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.+|+|++| |.++.|+||.|+.+.|
T Consensus 297 dild~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHH
Confidence 999999999 9999999999999876
No 20
>KOG0740|consensus
Probab=100.00 E-value=6.8e-33 Score=269.24 Aligned_cols=185 Identities=44% Similarity=0.723 Sum_probs=175.0
Q ss_pred ccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 154 ~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.|.-...++.|+|+.|++.+|+.+.+++++|+.++++|.... .+++++||.||||+|||+|++|||.++++.|+++++
T Consensus 142 EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr--~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 142 EIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR--EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA 219 (428)
T ss_pred HHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc--cccchhheecCCCCchHHHHHHHHhhhcceEeeccH
Confidence 344445589999999999999999999999999999998655 788999999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
+.+.++|+|++++.++.+|..|+..+|+||||||+|.++..|....++.++++..+++..+++.......+|+||||||+
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999888889999999999
Q ss_pred CCCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 314 PDDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 314 ~~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
|+.+|++++|||.++++|++|+.+.|.
T Consensus 300 P~e~Dea~~Rrf~kr~yiplPd~etr~ 326 (428)
T KOG0740|consen 300 PWELDEAARRRFVKRLYIPLPDYETRS 326 (428)
T ss_pred chHHHHHHHHHhhceeeecCCCHHHHH
Confidence 999999999999999999999998774
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=259.63 Aligned_cols=180 Identities=36% Similarity=0.649 Sum_probs=162.9
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
.+.++++|+||+|++.++++|.+.+..|+.+|+.|...| +.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G-l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG-IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 456789999999999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
..+|.|+.+..++.+|..++..+|+||||||+|.++..+.. +......+.+..++..++++... .+++||+|||+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~ 293 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNR 293 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCC
Confidence 99999999999999999999999999999999999876632 22234556778889999887653 35999999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++.+|++++| ||+..++|++|+.++|
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~P~~~~R 321 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPLPDRRQK 321 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCCcCHHHH
Confidence 9999999999 9999999999999887
No 22
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=268.52 Aligned_cols=177 Identities=38% Similarity=0.645 Sum_probs=165.2
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
...++|.|+.|.+++|+++.+.|.. ++.|..|...| ...|+||||+||||||||+|||++|.+.+.||++++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lG-akiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcc-cccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 5689999999999999999999876 89999999999 489999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC---CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS---SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~---~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
.|+|-..+.++.+|..|++.+||||||||+|++...|. ++++..-++.+++++.+|||+.. +..|+|+++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 99999999999999999999999999999999998885 34666777889999999999984 35699999999999
Q ss_pred CCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 316 DIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 316 ~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
.+|+|++| ||++.+.+++||...|
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhH
Confidence 99999999 9999999999998776
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.2e-30 Score=261.32 Aligned_cols=184 Identities=38% Similarity=0.667 Sum_probs=162.4
Q ss_pred CccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-----
Q psy15087 153 NLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS----- 227 (341)
Q Consensus 153 ~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~----- 227 (341)
..+..+.++++|+||+|++.+++++.+.+..|+.+++.|+..| +.+|+|+|||||||||||++|+++|++++.+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD-LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc-CCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 4455566789999999999999999999999999999999999 5889999999999999999999999998543
Q ss_pred -----EEEeechhhhhhhcCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCC-chHHHHHHHHHHHHHhcCC
Q psy15087 228 -----FINLDISTLTDKLYGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSS-DHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 228 -----~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~-~~~~~~~i~~~ll~~ld~~ 297 (341)
|+.+..+++.++|.|+.+..++.+|..++.. .|+||||||+|.+++.++.+ ..+...+++++|+..||++
T Consensus 249 ~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 249 GDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred CCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999988764 69999999999999877543 3344567789999999998
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
... .+++||+|||+++.||++++| ||+..|+|++|+.++|
T Consensus 329 ~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r 370 (512)
T TIGR03689 329 ESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAA 370 (512)
T ss_pred ccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHH
Confidence 754 469999999999999999999 9999999999998876
No 24
>KOG0651|consensus
Probab=99.97 E-value=2.7e-30 Score=238.59 Aligned_cols=179 Identities=40% Similarity=0.673 Sum_probs=160.0
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
..-+.+|++++|.-.+..++.+.+..|+.+|.+|.+.| +++|.+++||||||+|||++|+++|..++++|+.+..+.+.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34467999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHH---HHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLK---SIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~---~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|.|++.+.+++.|..|+...|||||+||||++.+.+.+........++ -.|+++|+++.... +|-+|+|||+|
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~--rVk~ImatNrp 281 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH--RVKTIMATNRP 281 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcc--cccEEEecCCc
Confidence 99999999999999999999999999999999999888554433333444 44556666666543 58899999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.|||+++| |+++.+++|+|+...|
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhc
Confidence 999999999 9999999999998876
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=7e-30 Score=250.77 Aligned_cols=179 Identities=40% Similarity=0.669 Sum_probs=160.0
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++.+|+||+|+++++++|.+.+..|+.+++.|...| +.+|+++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 45688999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc---hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD---HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~---~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
.+|.|+....++.+|..++...|+||||||+|.+++.+.... .....+.+..++..++++... .+++||+|||++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~ 280 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRI 280 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCCh
Confidence 999999999999999999999999999999999987764322 223344566777788876543 369999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.+|++++| ||+..++|++|+.++|
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R 307 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGR 307 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHH
Confidence 999999998 9999999999999876
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=3.8e-29 Score=250.58 Aligned_cols=174 Identities=27% Similarity=0.473 Sum_probs=151.0
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
..+.+|+||+|++.+|+.|.+..... .......| +.+|+|+|||||||||||++|+++|++++.+|+.++++.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 34778999999999999998755332 23345567 588999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC-CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCC
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS-SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~-~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~l 317 (341)
+|+|+++..++.+|..++..+||||||||||.++..+. .++.....+++.+|+..++.. ..+++||+|||+++.|
T Consensus 298 ~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLL 373 (489)
T ss_pred cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhC
Confidence 99999999999999999999999999999999987543 345566788888999888742 3469999999999999
Q ss_pred cHHHHc--cCCceEEecCCCcCCCC
Q psy15087 318 DPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 318 d~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
|++++| ||+..++|++|+.++|.
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 999998 99999999999998873
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=3.4e-29 Score=253.23 Aligned_cols=182 Identities=38% Similarity=0.644 Sum_probs=162.9
Q ss_pred ccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 154 ~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
+..++.++.+|+||+|++++++++.+.+.. +.+++.|...| ..+|+|+||+||||||||++|+++|.+++.+|+.+++
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 344566799999999999999999998776 88999998888 5889999999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
+++.+.+.|...+.++.+|..++...||||||||+|.+...++. .......+.+++|+.++|++... .+++||+|
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~a 199 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAA 199 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEe
Confidence 99999999999999999999999999999999999999887754 23445567788999999988654 45999999
Q ss_pred eCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 311 TNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 311 TN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
||+++.+|++++| ||+..+++++|+.++|
T Consensus 200 Tn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 200 TNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred cCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 9999999999999 9999999999998876
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=248.12 Aligned_cols=179 Identities=36% Similarity=0.627 Sum_probs=160.0
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.+..+|+||+|++.++++|.+++..|+.+++.|...| +.+++++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g-i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG-IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 45678999999999999999999999999999999999 58999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
.+|.|+....++.+|..+....|+||||||+|.++..+.. +......+.+..++..++++... .++.||+|||++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~ 332 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRI 332 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCCh
Confidence 9999999999999999999999999999999999877642 22233445566788888887643 459999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.+|++++| ||+..|+|++|+.++|
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence 999999998 9999999999998876
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.4e-28 Score=234.47 Aligned_cols=174 Identities=19% Similarity=0.222 Sum_probs=139.6
Q ss_pred Ccccccc-cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 161 NGSWKNI-AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 161 ~~~~~dI-~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
..+|+++ +|+--.+.-+..++...-+ +.+...+ +++|.+++||||||||||++|+++|++++++|+.++++++.++
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~-ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPN-IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHh--hhhhccC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 4466666 6666555555555433221 1122244 6899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHh-----cCCeEEEEcccchhhhcCCCCchHHHHHHH-HHHHHHhcCCC----------CCCCC
Q psy15087 240 LYGESPKLATAIFSLAEK-----IQPCIIFIDEIDSLLRSRSSSDHEATAQLK-SIFLSKWDGLT----------TDKNI 303 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~-----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~-~~ll~~ld~~~----------~~~~~ 303 (341)
|+|++++.++.+|..|.. .+||||||||||.+++.+.........+++ .+|++++|+.. .....
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999998875 479999999999999988755555555665 79999988641 12345
Q ss_pred CEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 304 DIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 304 ~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+++||+|||+|+.||++|+| ||++. +.+|+.++|
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~--i~lPd~e~R 303 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDR 303 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCce--eCCCCHHHH
Confidence 79999999999999999999 99985 468998876
No 30
>KOG0732|consensus
Probab=99.95 E-value=4.9e-28 Score=253.79 Aligned_cols=178 Identities=35% Similarity=0.618 Sum_probs=165.7
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeech
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDIS 234 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s 234 (341)
..+.|++|+|++.++..|++.|..|+.+|+.|...+ +.||+||||+||||||||+.|+++|..+ +..|+.-+++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 468999999999999999999999999999999999 6999999999999999999999999887 4577778889
Q ss_pred hhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 235 TLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
+..++|+|+.+..++.+|..|++++|+|||+||||-|.+.|++........+..+|+.+|||+... ++++||+|||+|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR--gqVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCc
Confidence 999999999999999999999999999999999999999987776677788899999999999875 459999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
+.+|+|++| ||++.+++++|+.+.|.
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~ 444 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARA 444 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHH
Confidence 999999999 99999999999988763
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=2.2e-27 Score=231.36 Aligned_cols=180 Identities=41% Similarity=0.690 Sum_probs=157.8
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
.+.+..+|+||+|+++++++|.+.+..|+.+++.|...| ..+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 355788999999999999999999999999999999998 5889999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc---hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD---HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~---~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
...+.|+....++.+|..++...|+||||||+|.+...+.... .....+.+..++..++++... .++.||+|||+
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~ 270 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNR 270 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCC
Confidence 9999999999999999999999999999999999986654321 222344456777777776543 46999999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++.+|++++| ||+..++|++|+.++|
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r 298 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHH
Confidence 9999999998 9999999999998776
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=3.5e-27 Score=243.07 Aligned_cols=180 Identities=34% Similarity=0.598 Sum_probs=159.5
Q ss_pred CCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 156 VPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 156 ~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
.+.....+|+||+|++++++++.+.+.. ++.++.|...| ...++|+||+||||||||++|+++|.+++.||+.+++++
T Consensus 174 ~~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~ 251 (638)
T CHL00176 174 MEADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSE 251 (638)
T ss_pred cccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHH
Confidence 3445578999999999999999988765 78899888888 578999999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
+...+.|.....++.+|..++...||||||||+|.+...+.. +.+....+.++.|+..+|++... .+++||+|||
T Consensus 252 f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN 329 (638)
T CHL00176 252 FVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATN 329 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecC
Confidence 999999988889999999999999999999999999876643 33445567788999999987653 4699999999
Q ss_pred CCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 313 RPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 313 ~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+++.+|++++| ||++.+.+++|+.++|
T Consensus 330 ~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 330 RVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred chHhhhhhhhccccCceEEEECCCCHHHH
Confidence 99999999998 9999999999999887
No 33
>KOG0730|consensus
Probab=99.94 E-value=2.2e-26 Score=230.23 Aligned_cols=176 Identities=36% Similarity=0.615 Sum_probs=164.8
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
.+++ ++++|.......+.+.+.+|+.++..+...| .++|+|+|+|||||||||++++++|++.++.++.+++++++.+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK 257 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHh
Confidence 4566 7899999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhcC-CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 240 LYGESPKLATAIFSLAEKIQ-PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~~~-p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
+.|++++.++..|..+.+.+ |++|||||+|.+++++..... ...++..+++..+|++.. ..+++|+++||+|+.||
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred cccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 99999999999999999999 999999999999998876655 788899999999999874 35699999999999999
Q ss_pred HHHHc-cCCceEEecCCCcCCCC
Q psy15087 319 PAIAR-RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 319 ~al~r-Rf~~~i~i~lP~~e~R~ 340 (341)
++++| ||++.+.|..|+..+|.
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~Rl 357 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRL 357 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHH
Confidence 99999 99999999999988773
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=2.7e-26 Score=242.04 Aligned_cols=177 Identities=40% Similarity=0.692 Sum_probs=163.0
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
++.+|+||+|++.+++.|.+.+..|+.+|+.+...| +.+++++|||||||||||++|+++|++++.+++.++++++..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g-i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG-IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 578999999999999999999999999999999999 5889999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcH
Q psy15087 240 LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDP 319 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~ 319 (341)
+.|+.+..++.+|..+....|+||||||+|.+.+.+.....+...+++++|+..++++... ..++||++||+++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC--CCEEEEeecCChhhcCH
Confidence 9999999999999999999999999999999998876555555677889999999988653 46999999999999999
Q ss_pred HHHc--cCCceEEecCCCcCCC
Q psy15087 320 AIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 320 al~r--Rf~~~i~i~lP~~e~R 339 (341)
+++| ||+..+.+++|+.++|
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R 351 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRAR 351 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHH
Confidence 9998 9999999999998765
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=3.5e-25 Score=229.83 Aligned_cols=183 Identities=35% Similarity=0.627 Sum_probs=160.3
Q ss_pred ccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 154 ~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
...|......|+|+.|.+..++++.+.+.. +..+..+...+ ...++|+||+||||||||++|+++|.+++.+|+.+++
T Consensus 141 ~~~~~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~ 218 (644)
T PRK10733 141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 218 (644)
T ss_pred ccCchhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence 344556678999999999999999998876 56677777666 4778899999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
+++...+.|.....++.+|..++..+||||||||+|.+...+.. +.+....+.+++++.+||++... .+++||+|
T Consensus 219 ~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaa 296 (644)
T PRK10733 219 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAA 296 (644)
T ss_pred HHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEe
Confidence 99999999999999999999999999999999999999887753 23445567889999999998653 46999999
Q ss_pred eCCCCCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 311 TNRPDDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 311 TN~~~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
||+|+.||++++| ||++.+.|++|+.++|.
T Consensus 297 TN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 297 TNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred cCChhhcCHHHhCCcccceEEEcCCCCHHHHH
Confidence 9999999999999 99999999999987763
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=4.6e-25 Score=240.26 Aligned_cols=143 Identities=24% Similarity=0.392 Sum_probs=118.4
Q ss_pred HhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh----------cC------------------
Q psy15087 191 LKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL----------YG------------------ 242 (341)
Q Consensus 191 ~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~----------~g------------------ 242 (341)
..+.| ..+|+||||+||||||||+||||+|.++++||+.++++++..++ .|
T Consensus 1622 slrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1622 SLRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34566 58999999999999999999999999999999999999998654 12
Q ss_pred -------------Cch--HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-CCCCCEE
Q psy15087 243 -------------ESP--KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-DKNIDII 306 (341)
Q Consensus 243 -------------~~~--~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-~~~~~vi 306 (341)
..+ ..++.+|..|+.++||||||||||.+..... ....+++|+.+|++... ....+|+
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCEE
Confidence 112 2378899999999999999999999976521 11236888999998642 2235799
Q ss_pred EEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCCC
Q psy15087 307 IMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 307 VIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R~ 340 (341)
||||||+|+.||||++| ||++.+.|+.|+..+|.
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ 1810 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQR 1810 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHH
Confidence 99999999999999999 99999999999988763
No 37
>KOG0741|consensus
Probab=99.90 E-value=5.8e-24 Score=207.83 Aligned_cols=176 Identities=32% Similarity=0.472 Sum_probs=148.2
Q ss_pred Cccccc--ccCcHHHHHH-HHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-cEEEeechhh
Q psy15087 161 NGSWKN--IAGLEHIKKE-LNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-SFINLDISTL 236 (341)
Q Consensus 161 ~~~~~d--I~G~~~~k~~-L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-~~i~i~~s~l 236 (341)
+..|.+ |+|++.--.. .+++.....-.|+...++| +..-+|+|||||||||||.+||.|..-+++ +--.++++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG-i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG-IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC-ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 445665 7898865544 3555555566788888899 688899999999999999999999999976 4456899999
Q ss_pred hhhhcCCchHHHHHHHHHHHhc--------CCeEEEEcccchhhhcCCCC--chHHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy15087 237 TDKLYGESPKLATAIFSLAEKI--------QPCIIFIDEIDSLLRSRSSS--DHEATAQLKSIFLSKWDGLTTDKNIDII 306 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~--------~p~II~IDEiD~l~~~~~~~--~~~~~~~i~~~ll~~ld~~~~~~~~~vi 306 (341)
.++|+|++++.++.+|..|..- .--||++||||+++..|++. +......+.++|+..|||+..-+ +++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN--NIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN--NIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh--cEE
Confidence 9999999999999999877432 22499999999999988653 35678889999999999998754 599
Q ss_pred EEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 307 IMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 307 VIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
||+-|||++.||+|++| ||....+|.+||+..|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gR 406 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGR 406 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCc
Confidence 99999999999999999 9999999999999887
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=6.2e-23 Score=169.82 Aligned_cols=130 Identities=38% Similarity=0.617 Sum_probs=117.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcC-CeEEEEcccchhhhcCCCCchH
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQ-PCIIFIDEIDSLLRSRSSSDHE 281 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~-p~II~IDEiD~l~~~~~~~~~~ 281 (341)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.++....+..+|..+.... |+||||||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999999887 9999999999999887555666
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHH-ccCCceEEecC
Q psy15087 282 ATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIA-RRMPKKYHIKL 333 (341)
Q Consensus 282 ~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~-rRf~~~i~i~l 333 (341)
....+.+.++..++..... ..+++||+|||.++.++++++ +||+.++++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 7778889999999987764 346999999999999999999 99999998875
No 39
>KOG0744|consensus
Probab=99.85 E-value=1.5e-21 Score=181.69 Aligned_cols=183 Identities=25% Similarity=0.413 Sum_probs=149.0
Q ss_pred ccCC-CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc--------
Q psy15087 154 LIVP-EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-------- 224 (341)
Q Consensus 154 ~v~p-~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-------- 224 (341)
.+.| .+...-|+.++--..+|++|...+...+...+.-....++...+-+||+||||||||+|+|++|+.+
T Consensus 130 w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred eeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcc
Confidence 3344 4457789999988999999988887766555443444556667889999999999999999999998
Q ss_pred -CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhc---CCe--EEEEcccchhhhcCC----CCchHHHHHHHHHHHHHh
Q psy15087 225 -NVSFINLDISTLTDKLYGESPKLATAIFSLAEKI---QPC--IIFIDEIDSLLRSRS----SSDHEATAQLKSIFLSKW 294 (341)
Q Consensus 225 -~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~---~p~--II~IDEiD~l~~~~~----~~~~~~~~~i~~~ll~~l 294 (341)
...++.+++..+.++|++++.+.+..+|+..... ..+ .++|||++.+...|. ..++...-|+.+.+++++
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred ccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 3467899999999999999999999999866543 223 466899999987773 234445677899999999
Q ss_pred cCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 295 DGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 295 d~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
|.+...+ ++++++|+|-.+.||.|+.+|-+.+.+|..|+.+.
T Consensus 290 DrlK~~~--NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 290 DRLKRYP--NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHhccCC--CEEEEeccchHHHHHHHhhhHhhheeecCCccHHH
Confidence 9987654 59999999999999999999999999999998754
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.82 E-value=1.4e-19 Score=168.73 Aligned_cols=166 Identities=19% Similarity=0.313 Sum_probs=122.1
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCC--CCCceEEEECCCCCCHHHHHHHHHHHc-------CCcEEEeec
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLL--KPPKGILLYGPPGCGKTMIAKATAKEA-------NVSFINLDI 233 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~--~~~~gvLL~GPpGtGKT~LAkalA~~l-------~~~~i~i~~ 233 (341)
.+++++|++.+|+.|.+.+.++... ......|.. ....+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4578999999999999998776443 222234432 234579999999999999999999875 347889999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
+++.+.++|+....++.+|..+. ++||||||+|.|.... ........+..++..++.. +.++++|+++..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 99999999999888888887764 4899999999996421 1122344567777777653 234666666544
Q ss_pred CC-----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 314 PD-----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~-----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
.+ .++|++++||+..+.++.++.+++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 32 367899999988888887776543
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=1.4e-19 Score=171.05 Aligned_cols=166 Identities=18% Similarity=0.294 Sum_probs=125.1
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCC--CCceEEEECCCCCCHHHHHHHHHHHc-------CCcEEEeech
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLK--PPKGILLYGPPGCGKTMIAKATAKEA-------NVSFINLDIS 234 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~--~~~gvLL~GPpGtGKT~LAkalA~~l-------~~~~i~i~~s 234 (341)
+++++|++.+|++|.+.+.. +..+......|+.. ++.++||+||||||||++|+++|..+ ..+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 34799999999999998876 44455555566433 23459999999999999999998875 2368999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 235 TLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++...++|+.......++..+. ++||||||++.+...+. ........+..|+..|+.. ..+++||++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 9999999988777777777653 48999999999864332 2224456677888877643 2457788877642
Q ss_pred C-----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 315 D-----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~-----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
. .++|++++||+..++|+.++.+++
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2 346999999999999999987653
No 42
>KOG0741|consensus
Probab=99.81 E-value=8.5e-20 Score=178.82 Aligned_cols=238 Identities=19% Similarity=0.185 Sum_probs=168.2
Q ss_pred hhhhhcccCCcccchhhccCCCCC-chhhHHHHHHHHHHHHHhcCcc--------cCCCCCHHHHHHhcCccCCCCc--C
Q psy15087 93 TNKLMATHQDTNHVQCYFSDPSGT-STFNVLLAITTAYEKLKKVGLD--------VGNKLNTHELKIAANLIVPEEI--N 161 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~v~p~~~--~ 161 (341)
.+..|..|+|.++++..++|+||+ ..+.|+.|.+.|.+++-+.|.. +..+++..++..++..|.|.-- +
T Consensus 419 e~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~se 498 (744)
T KOG0741|consen 419 ENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISE 498 (744)
T ss_pred hcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCH
Confidence 356899999999999999999999 4557999999999999988833 2368899999999999988531 1
Q ss_pred ccccc--ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh-hhh
Q psy15087 162 GSWKN--IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST-LTD 238 (341)
Q Consensus 162 ~~~~d--I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~-l~~ 238 (341)
..++. ..|+-.--..+.+.+.......+..+... ..+-.+|||+||||+|||.||..+|..++.||+.+-.++ +.+
T Consensus 499 e~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~-~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG 577 (744)
T KOG0741|consen 499 EDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSE-RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIG 577 (744)
T ss_pred HHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccc-cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccC
Confidence 11111 11111111111222221111122222222 355678999999999999999999999999999965444 332
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
..-...-..++.+|..|.+++-+||++|++++|... .+-++++++.+++.|+..+....+.+ .+.+|++||.+.+.+.
T Consensus 578 ~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 578 LSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-VPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQ 655 (744)
T ss_pred ccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc-cccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHH
Confidence 211222346899999999999999999999999765 45667889999999999998877654 3789999998866543
Q ss_pred -HHHHccCCceEEecC
Q psy15087 319 -PAIARRMPKKYHIKL 333 (341)
Q Consensus 319 -~al~rRf~~~i~i~l 333 (341)
-.++.-|+-.++||-
T Consensus 656 ~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 656 EMGILDCFSSTIHVPN 671 (744)
T ss_pred HcCHHHhhhheeecCc
Confidence 256667776666554
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=2.7e-19 Score=168.83 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=125.4
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCC--CCceEEEECCCCCCHHHHHHHHHHHcC-------CcEEEeechhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLK--PPKGILLYGPPGCGKTMIAKATAKEAN-------VSFINLDISTL 236 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~--~~~gvLL~GPpGtGKT~LAkalA~~l~-------~~~i~i~~s~l 236 (341)
+++|++++|+.|.+.+.+ +..++...+.|+.. +..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998887 55666666666422 445899999999999999999988762 37999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC--
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP-- 314 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~-- 314 (341)
...++|.....+..+|..+. ++||||||++.+.+.+.. .......++.|+..|+.. +.+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRM 172 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHH
Confidence 88899988877777777664 489999999998643322 223455677788888643 3457888887653
Q ss_pred C---CCcHHHHccCCceEEecCCCcCC
Q psy15087 315 D---DIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 315 ~---~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+ .+++++++||+..++++.++.++
T Consensus 173 ~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 173 DSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred HHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2 25899999999999998887654
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.79 E-value=1.1e-18 Score=186.38 Aligned_cols=275 Identities=18% Similarity=0.224 Sum_probs=171.6
Q ss_pred ccCCCcchhhHHHHHHHHHHHhcccCCCCcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh-hhhhh
Q psy15087 21 TQKPTYSIYKFEGFITFLYKQYSITHTRMSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT-TNKLM 97 (341)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 97 (341)
-++-+.|...+.+.+.....+++.......++.++ ...++......+......|....|++ ..++.+.. ...++
T Consensus 50 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll---~~~~~~~~~~~~~l 126 (857)
T PRK10865 50 LTSAGINAGQLRTDINQALSRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFV---LAALESRGTLADIL 126 (857)
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHH---HHHHcCcchHHHHH
Confidence 45677889999999998877776421111344444 44667776666666666777777766 44443321 11122
Q ss_pred cc-cCCcccchhhccCCCCCchhhHHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCcHHHHHH
Q psy15087 98 AT-HQDTNHVQCYFSDPSGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKE 176 (341)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~~ 176 (341)
.. +++.+.+...+....+........+ ......|.+.+.+ +++.. .+..+++++|++...+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----l~~~~------------r~~~l~~vigr~~ei~~ 189 (857)
T PRK10865 127 KAAGATTANITQAIEQMRGGESVNDQGA-EDQRQALKKYTID----LTERA------------EQGKLDPVIGRDEEIRR 189 (857)
T ss_pred HHcCCCHHHHHHHHHHhhcccccccccc-ccchhHHHHHhhh----HHHHH------------hcCCCCcCCCCHHHHHH
Confidence 21 2332232222111000000000000 0011223333322 22222 26678899999998777
Q ss_pred HHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhh--hhhcCCc
Q psy15087 177 LNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLT--DKLYGES 244 (341)
Q Consensus 177 L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~--~~~~g~~ 244 (341)
+.+++.. +...+++|+||||||||++|+++|..+ +.+++.++.+.+. .++.|+.
T Consensus 190 ~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 190 TIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred HHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 7776544 445689999999999999999999987 7788998888765 4578999
Q ss_pred hHHHHHHHHHHHh-cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCc
Q psy15087 245 PKLATAIFSLAEK-IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DID 318 (341)
Q Consensus 245 ~~~i~~lf~~a~~-~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld 318 (341)
+..++.+|..+.. ..++||||||+|.+.+.+.+.+.... .+.|...+ .++.+.+||||+..+ .+|
T Consensus 256 e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~---~~~lkp~l------~~g~l~~IgaTt~~e~r~~~~~d 326 (857)
T PRK10865 256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA---GNMLKPAL------ARGELHCVGATTLDEYRQYIEKD 326 (857)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhH---HHHhcchh------hcCCCeEEEcCCCHHHHHHhhhc
Confidence 9999999987544 46799999999999876533222111 22222222 135699999999876 489
Q ss_pred HHHHccCCceEEecCCCcCCC
Q psy15087 319 PAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~rRf~~~i~i~lP~~e~R 339 (341)
+++.|||.. +.++.|+.+++
T Consensus 327 ~al~rRf~~-i~v~eP~~~~~ 346 (857)
T PRK10865 327 AALERRFQK-VFVAEPSVEDT 346 (857)
T ss_pred HHHHhhCCE-EEeCCCCHHHH
Confidence 999999974 88999987653
No 45
>KOG0743|consensus
Probab=99.78 E-value=7.5e-19 Score=170.56 Aligned_cols=169 Identities=23% Similarity=0.325 Sum_probs=135.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+.+|+.++--.+.|++|.+-+..+++..+.|++-| ....+|.|||||||||||+++.|+|+.++..++.++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvG-kawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVG-KAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcC-cchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC--
Confidence 58999999999999999999999999999999988 466789999999999999999999999999999998877543
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC--C----chH-HHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS--S----DHE-ATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~--~----~~~-~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
... ++.++... ...+||+|++||+-+.-+.. . ... ...-.++.||+.+||+.+..+..-+||.|||.
T Consensus 274 ---n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 274 ---DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---cHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 222 45554433 23489999999997643221 1 110 12233678999999999877667889999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSS 338 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~ 338 (341)
++.|||||+| |++.+|++..-+.++
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 9999999999 999988887766544
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=3.7e-18 Score=180.18 Aligned_cols=276 Identities=19% Similarity=0.223 Sum_probs=172.0
Q ss_pred cCCCcchhhHHHHHHHHHH-Hhcc-cCCCCcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh--hhh
Q psy15087 22 QKPTYSIYKFEGFITFLYK-QYSI-THTRMSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT--TNK 95 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (341)
++.+.|+..+.+.+..... +.+. ..+...++..+ ...++......|...-..|....|++ +.++.+.. ...
T Consensus 44 ~~~gid~~~l~~~l~~~l~~~~p~~~~~~~~~~~~S~~lk~vL~~A~~~A~~~g~~~I~teHLL---LALl~~~~~~a~~ 120 (731)
T TIGR02639 44 EECGGDVEALRKDLEDYLENNLPSITEENEADPEQTVGVQRVLQRALLHVKSAGKKEIGIGDIL---VALFDEEDSHASY 120 (731)
T ss_pred HHcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHcCCCccCHHHHH---HHHhcCcccHHHH
Confidence 4567788888888877654 2221 11111233333 55677777677777667788888877 55554422 112
Q ss_pred hhcc-cCCcccchhhccC--CC-CCc-hhhHHH--HH-HHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccc
Q psy15087 96 LMAT-HQDTNHVQCYFSD--PS-GTS-TFNVLL--AI-TTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNI 167 (341)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~--~~-~~~-~~~~~~--~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI 167 (341)
++.. .++.+.+...+.. .. +.. ...... .. ......|.+.+.+ +++.. .+..++++
T Consensus 121 lL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~~~------------r~~~l~~~ 184 (731)
T TIGR02639 121 FLKSQGITRLDILEYISHGIPKDDGKNRDAEEAGKEEAKKQEDALEKYTVD----LTEKA------------KNGKIDPL 184 (731)
T ss_pred HHHHcCCCHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhhh----HHHHH------------hcCCCCcc
Confidence 2322 2332222221110 00 000 000000 00 0001123333322 22211 26678899
Q ss_pred cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhh
Q psy15087 168 AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLT 237 (341)
Q Consensus 168 ~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~ 237 (341)
+|+++..+.+.+.+.. ....+++|+||||||||++|+++|..+ +..++.++++.+.
T Consensus 185 igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 185 IGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred cCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 9999999887766543 345689999999999999999999987 7789999988887
Q ss_pred --hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 238 --DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 238 --~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
.+|.|+.+..++.++..+....++||||||+|.+.+.....+.. ....+.|...+. ++.+.+|++||..+
T Consensus 251 a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~------~g~i~~IgaTt~~e 322 (731)
T TIGR02639 251 AGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS------SGKLRCIGSTTYEE 322 (731)
T ss_pred hhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh------CCCeEEEEecCHHH
Confidence 47889999999999999987788999999999998764322211 111223333332 34699999999733
Q ss_pred -----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 316 -----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 316 -----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
.+|+++.|||. .+.|+.|+.+++
T Consensus 323 ~~~~~~~d~al~rRf~-~i~v~~p~~~~~ 350 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQ-KIDVGEPSIEET 350 (731)
T ss_pred HHHHhhhhHHHHHhCc-eEEeCCCCHHHH
Confidence 57999999997 599999998764
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.76 E-value=8.3e-18 Score=180.01 Aligned_cols=275 Identities=19% Similarity=0.261 Sum_probs=172.9
Q ss_pred ccCCCcchhhHHHHHHHHHHHhcccCCCCcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh-hhhhh
Q psy15087 21 TQKPTYSIYKFEGFITFLYKQYSITHTRMSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT-TNKLM 97 (341)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 97 (341)
-++-+.|+..+...+.....+++.......++.++ ...++......|...-..|....|++ +.++.+.. ...++
T Consensus 45 L~~~Gvd~~~l~~~l~~~l~~~~~~~~~~~~~~~S~~~~~vLe~A~~~A~~~g~~~I~teHLL---lALl~e~~~a~~iL 121 (852)
T TIGR03346 45 LQKAGVNVGALRQALEKELEKLPKVSGPGGQVYLSPELNRLLNLAEKLAQKRGDEFISSEHLL---LALLDDKGTLGKLL 121 (852)
T ss_pred HHHcCCCHHHHHHHHHHHhcccccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHH---HHHHcCCccHHHHH
Confidence 34567889999998888877766433222344444 55777777777777667788888877 55554432 11223
Q ss_pred cc-cCCcccchhhccCCCCCchhhHHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCcHHHHHH
Q psy15087 98 AT-HQDTNHVQCYFSDPSGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKE 176 (341)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~~ 176 (341)
.. .++...+...+....+......... ......|.+.+.+ +++.. .+..++.++|++...+.
T Consensus 122 ~~~gi~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~----l~~~~------------~~~~~~~~igr~~ei~~ 184 (852)
T TIGR03346 122 KEAGATADALEAAINAVRGGQKVTSANA-EDQYEALEKYARD----LTERA------------REGKLDPVIGRDEEIRR 184 (852)
T ss_pred HHcCCCHHHHHHHHHhhccCcccccccc-ccchhHHHHHhhh----HHHHh------------hCCCCCcCCCcHHHHHH
Confidence 22 2222222221111000000000000 0001223333322 22221 26678899999998777
Q ss_pred HHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhh--hhhcCCc
Q psy15087 177 LNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLT--DKLYGES 244 (341)
Q Consensus 177 L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~--~~~~g~~ 244 (341)
+.+.+.. +...+++|+||||||||++++++|..+ +.+++.++.+.+. .+|.|+.
T Consensus 185 ~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~ 250 (852)
T TIGR03346 185 TIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEF 250 (852)
T ss_pred HHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhH
Confidence 7776543 445678999999999999999999986 6788888888775 4688899
Q ss_pred hHHHHHHHHHHHhc-CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCc
Q psy15087 245 PKLATAIFSLAEKI-QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DID 318 (341)
Q Consensus 245 ~~~i~~lf~~a~~~-~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld 318 (341)
+..++.++..+... .++||||||+|.+.+.+...+.. ...+.|...+ .+..+.+||+|+..+ .+|
T Consensus 251 e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~~~Lk~~l------~~g~i~~IgaTt~~e~r~~~~~d 321 (852)
T TIGR03346 251 EERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM---DAGNMLKPAL------ARGELHCIGATTLDEYRKYIEKD 321 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh---HHHHHhchhh------hcCceEEEEeCcHHHHHHHhhcC
Confidence 99999999888654 58999999999998644322211 1222232222 134699999999864 479
Q ss_pred HHHHccCCceEEecCCCcCCC
Q psy15087 319 PAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~rRf~~~i~i~lP~~e~R 339 (341)
+++.|||.. +.++.|+.+++
T Consensus 322 ~al~rRf~~-i~v~~p~~~~~ 341 (852)
T TIGR03346 322 AALERRFQP-VFVDEPTVEDT 341 (852)
T ss_pred HHHHhcCCE-EEeCCCCHHHH
Confidence 999999965 89999987653
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=2.6e-17 Score=172.96 Aligned_cols=155 Identities=28% Similarity=0.375 Sum_probs=120.2
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
...++.++|.+...+.+.+.+.. ....++||+||||||||++|+++|... ++.++.
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 66778899999999998887654 345678999999999999999999874 566777
Q ss_pred eechhhh--hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC-CchHHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy15087 231 LDISTLT--DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS-SDHEATAQLKSIFLSKWDGLTTDKNIDIII 307 (341)
Q Consensus 231 i~~s~l~--~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~-~~~~~~~~i~~~ll~~ld~~~~~~~~~viV 307 (341)
++...+. .+|.|+.+..++.++..+....++||||||+|.+.+.+.. +.......++..++. +..+.+
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~---------~g~i~v 318 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---------SGKIRV 318 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---------CCCeEE
Confidence 7766665 4578889999999999888888899999999999876542 222222222333322 346999
Q ss_pred EEEeCCCC-----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 308 MGATNRPD-----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 308 IatTN~~~-----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
|++||.++ ..|+++.|||. .+.|+.|+.+++
T Consensus 319 IgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~ 354 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEET 354 (758)
T ss_pred EecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHH
Confidence 99999865 57999999996 699999998764
No 49
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.74 E-value=1.2e-17 Score=178.33 Aligned_cols=154 Identities=26% Similarity=0.368 Sum_probs=121.2
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
+..|+.++|.+..++.+.+.+.. +.+++++|+||||||||++|+++|..+ +.+++.
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 66788999999999999887654 456689999999999999999999986 478999
Q ss_pred eechhhh--hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy15087 231 LDISTLT--DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIM 308 (341)
Q Consensus 231 i~~s~l~--~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVI 308 (341)
++.+.+. .+|.|+.+..++.++..+....++||||||+|.+.+.....+..... +.|...+. ++.+.+|
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a---~lLkp~l~------rg~l~~I 311 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA---NILKPALA------RGELQCI 311 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH---HHhHHHHh------CCCcEEE
Confidence 9998876 46889999999999999988888999999999998765432221112 22222222 3468999
Q ss_pred EEeCCCC-----CCcHHHHccCCceEEecCCCcCC
Q psy15087 309 GATNRPD-----DIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 309 atTN~~~-----~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++|+..+ ..|+++.+||.. +.++.|+.++
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e 345 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEE 345 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHH
Confidence 9999754 478999999975 7888887654
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=1.2e-17 Score=150.33 Aligned_cols=146 Identities=25% Similarity=0.332 Sum_probs=92.7
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+.+|+|++||++++..+.-.+.....+ ..+..++|||||||+|||+||+.||++++.+|...+++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 568999999999999987766543111 145668999999999999999999999999999888755321
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC------CC--------CCCEE
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT------DK--------NIDII 306 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~------~~--------~~~vi 306 (341)
...+..++... ....||||||||++. ......|+..|+...- .. -.++.
T Consensus 89 ----~~dl~~il~~l--~~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ----AGDLAAILTNL--KEGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ----HHHHHHHHHhc--CCCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 12223333332 245799999999983 3334566776764321 00 12478
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCC
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP 334 (341)
+|+||++...+.+++++||.....+..=
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y 179 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFY 179 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----
T ss_pred EeeeeccccccchhHHhhcceecchhcC
Confidence 9999999999999999999986665543
No 51
>KOG0742|consensus
Probab=99.74 E-value=1.1e-17 Score=160.01 Aligned_cols=167 Identities=27% Similarity=0.412 Sum_probs=123.7
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcC
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYG 242 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g 242 (341)
-|++|+-.....+.|.++....- +... . ..+-+++|||||||||||++|+.+|..+|..+-.+.+.++.- .-.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTa-NTK~----h-~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATA-NTKK----H-QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhc-cccc----c-cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 46677766666666666554321 1100 0 145578999999999999999999999999887777666532 122
Q ss_pred CchHHHHHHHHHHHhcCCe-EEEEcccchhhhcCCCC-chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHH
Q psy15087 243 ESPKLATAIFSLAEKIQPC-IIFIDEIDSLLRSRSSS-DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPA 320 (341)
Q Consensus 243 ~~~~~i~~lf~~a~~~~p~-II~IDEiD~l~~~~~~~-~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~a 320 (341)
+....+.++|..++++..+ +|||||.|.++..|+.. ..+..+..++.||-.-. +.+..++++.+||+|.++|.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG----dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc----ccccceEEEeccCCccchhHH
Confidence 3345688999999988765 78999999999888653 34555556666664322 123468999999999999999
Q ss_pred HHccCCceEEecCCCcCCCC
Q psy15087 321 IARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 321 l~rRf~~~i~i~lP~~e~R~ 340 (341)
+-+|++..++|++|..++|.
T Consensus 502 V~DRide~veFpLPGeEERf 521 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERF 521 (630)
T ss_pred HHhhhhheeecCCCChHHHH
Confidence 99999999999999999873
No 52
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=4.7e-17 Score=173.62 Aligned_cols=154 Identities=21% Similarity=0.369 Sum_probs=116.8
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
+..+++++|+++..+.+.+.+.. +...+++|+||||||||++|+.+|+.+ +..++.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 67888999999987777665533 445689999999999999999999986 355778
Q ss_pred eechhhh--hhhcCCchHHHHHHHHHHHh-cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy15087 231 LDISTLT--DKLYGESPKLATAIFSLAEK-IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIII 307 (341)
Q Consensus 231 i~~s~l~--~~~~g~~~~~i~~lf~~a~~-~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viV 307 (341)
++.+.+. ..+.|+.+..++.++..+.. ..++||||||+|.+.+.+...+..... +.|...+. ++.+.+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~---n~Lkp~l~------~G~l~~ 319 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA---NLLKPALA------RGELRT 319 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH---HHhhHHhh------CCCeEE
Confidence 8877765 36788999999999998865 367899999999998765432221111 22333332 346899
Q ss_pred EEEeCCCC-----CCcHHHHccCCceEEecCCCcCC
Q psy15087 308 MGATNRPD-----DIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 308 IatTN~~~-----~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
||||+..+ .+|++|.|||. .+.|+.|+.++
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~ 354 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEET 354 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHH
Confidence 99998743 48999999996 59999999775
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=4.3e-17 Score=173.00 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=112.1
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh--------
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT-------- 237 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~-------- 237 (341)
+++|++.+++.+.+.+....... ...+.++||+||||||||++|+++|..++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~--------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG--------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 48999999999998765432111 12234799999999999999999999999999998765432
Q ss_pred -hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC-----CCC------CCCCCE
Q psy15087 238 -DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG-----LTT------DKNIDI 305 (341)
Q Consensus 238 -~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~-----~~~------~~~~~v 305 (341)
..|.|.....+.+.|..+....| ||+|||||++.+..++.. .+.|+..+|. +.. .+-.++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~-------~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDP-------ASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCH-------HHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24567766677777877766555 899999999976433221 2234444431 000 011468
Q ss_pred EEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 306 IIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 306 iVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++|+|||..+.+++++++||. .+.++.|+.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e 496 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRME-VIELSGYTEEE 496 (775)
T ss_pred EEEEecCCchhCCHHHhCCee-EEecCCCCHHH
Confidence 999999999999999999995 57888777544
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.67 E-value=2.9e-16 Score=150.50 Aligned_cols=135 Identities=30% Similarity=0.468 Sum_probs=99.7
Q ss_pred CcccccccCcHHHHH---HHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKK---ELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~---~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++++||++..- -|.+++.. ....+++||||||||||+||+.||+..+..|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 668899999988763 34444432 45568999999999999999999999999999998644
Q ss_pred hhhcCCchHHHHHHHHHHHhcC----CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe--
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQ----PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT-- 311 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~----p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT-- 311 (341)
.+.+.++.++..+++.. ..|||||||+++...+ +..|+..++ ...+++||||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-----------QD~lLp~vE------~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-----------QDALLPHVE------NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-----------hhhhhhhhc------CCeEEEEeccCC
Confidence 34566788888885543 3799999999984332 345666554 2458888776
Q ss_pred CCCCCCcHHHHccCCceEEecCC
Q psy15087 312 NRPDDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 312 N~~~~ld~al~rRf~~~i~i~lP 334 (341)
|+.-.+.+||++|... +.+..-
T Consensus 142 NPsF~ln~ALlSR~~v-f~lk~L 163 (436)
T COG2256 142 NPSFELNPALLSRARV-FELKPL 163 (436)
T ss_pred CCCeeecHHHhhhhhe-eeeecC
Confidence 4455899999999754 554433
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.66 E-value=6.1e-16 Score=146.91 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=101.4
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcC
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYG 242 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g 242 (341)
+|++++|++++++.|...+...... ...+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 6899999999999998887542111 134568999999999999999999999998876665443211
Q ss_pred CchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC--------------CCCCCEEEE
Q psy15087 243 ESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT--------------DKNIDIIIM 308 (341)
Q Consensus 243 ~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~--------------~~~~~viVI 308 (341)
...+...+... ..+.+|||||++.+.+.. ...|...++.... ....++.+|
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11122222221 346899999999985421 1122222221110 011247899
Q ss_pred EEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 309 GATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 309 atTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++||++..+++++++||...+.++.|+.++
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHH
Confidence 999999999999999998888899888654
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.65 E-value=1e-15 Score=147.23 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=104.6
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+.+|++++|+++.++.|...+..... .+ .++.++||+||||||||++|+++|++++..+..++++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~-------~~--~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK-------RG--EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh-------cC--CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--
Confidence 55899999999999999888754211 11 45678999999999999999999999999887766553321
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-----CC---------CCCCEE
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-----TD---------KNIDII 306 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-----~~---------~~~~vi 306 (341)
...+..++... ..++||||||+|.+.... . ..+...++... .. .-.++.
T Consensus 90 ----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~--------~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 90 ----PGDLAAILTNL--EEGDVLFIDEIHRLSPVV--------E---EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred ----hHHHHHHHHhc--ccCCEEEEecHhhcchHH--------H---HHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 12233333332 356899999999984321 1 11222222110 00 012478
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+|++||++..+++++++||...+.++.|+.++
T Consensus 153 li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e 184 (328)
T PRK00080 153 LIGATTRAGLLTSPLRDRFGIVQRLEFYTVEE 184 (328)
T ss_pred EEeecCCcccCCHHHHHhcCeeeecCCCCHHH
Confidence 89999999999999999998888998888764
No 57
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.64 E-value=3.2e-16 Score=152.94 Aligned_cols=172 Identities=28% Similarity=0.425 Sum_probs=124.1
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-hhcC-Cc
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD-KLYG-ES 244 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~-~~~g-~~ 244 (341)
|+|++++|+.+..++.....+..+.....-..+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999999888765444332221111245789999999999999999999999999999999987764 5776 45
Q ss_pred hHHHHHHHHHH---------------------------------------------------------------------
Q psy15087 245 PKLATAIFSLA--------------------------------------------------------------------- 255 (341)
Q Consensus 245 ~~~i~~lf~~a--------------------------------------------------------------------- 255 (341)
+..++.+|..+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 55555555443
Q ss_pred ----------------------------------------------------------------------HhcCCeEEEE
Q psy15087 256 ----------------------------------------------------------------------EKIQPCIIFI 265 (341)
Q Consensus 256 ----------------------------------------------------------------------~~~~p~II~I 265 (341)
...+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0124579999
Q ss_pred cccchhhhcCCCCchHH-HHHHHHHHHHHhcCCCCC------CCCCEEEEEEeC----CCCCCcHHHHccCCceEEecCC
Q psy15087 266 DEIDSLLRSRSSSDHEA-TAQLKSIFLSKWDGLTTD------KNIDIIIMGATN----RPDDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 266 DEiD~l~~~~~~~~~~~-~~~i~~~ll~~ld~~~~~------~~~~viVIatTN----~~~~ld~al~rRf~~~i~i~lP 334 (341)
||||+++....+..... .+-+++.||..++|-.-. +..++++||+.- .|+++-|.|.-||+.++.+...
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986653333233 344788899998873321 124578887753 4777889999999998888877
Q ss_pred CcCC
Q psy15087 335 LLSS 338 (341)
Q Consensus 335 ~~e~ 338 (341)
+.++
T Consensus 334 ~~ed 337 (441)
T TIGR00390 334 TTDD 337 (441)
T ss_pred CHHH
Confidence 7653
No 58
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-15 Score=154.62 Aligned_cols=271 Identities=19% Similarity=0.234 Sum_probs=179.2
Q ss_pred cCCCcchhhHHHHHHHHHHHhcccCCCCcceeeCchhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh--hhhhh-c
Q psy15087 22 QKPTYSIYKFEGFITFLYKQYSITHTRMSEVTVDSDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT--TNKLM-A 98 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~ 98 (341)
...++|.+.++..+.....+++..... ..+......++.+....|......|....+++ +.++.... ...++ .
T Consensus 45 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~a~~~a~~~~~~~v~~~~ll---la~~~~~~~~~~~~l~~ 120 (786)
T COG0542 45 NLCGIDLDKLRQELEEFIDKLPKVLGS-PYLSPRLKRVLERAWLLAQSLGDEYVSTEHLL---LALLNEPESVAAYILKK 120 (786)
T ss_pred HHcCCCHHHHHHHHHHHHhccCCCCCC-CCCCHHHHHHHHHHHHHHHhccCccccHHHHH---HHHhcccchHHHHHHHh
Confidence 345779999999999888888877665 33455577888888888877777788888866 44443321 11111 1
Q ss_pred ccCCcccchhhccCCCCCchhhHHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCcHHHHHHHH
Q psy15087 99 THQDTNHVQCYFSDPSGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELN 178 (341)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~~L~ 178 (341)
..++...+.......++........+. .....|.+.+.+ ++...+ ...++-++|.++.++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~y~~d----lt~~Ar------------~gklDPvIGRd~EI~r~i 183 (786)
T COG0542 121 LGVTRKDVEELIEELRGGNEVDSKNAE-EDQDALEKYTRD----LTELAR------------EGKLDPVIGRDEEIRRTI 183 (786)
T ss_pred ccCCHHHHHHHHHHHhcccccCCcccc-cchhhHHHHhhh----hHHHHh------------cCCCCCCcChHHHHHHHH
Confidence 122221111111111111000000000 001223333322 443333 677888999999999988
Q ss_pred HHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhhh--hhcCCchH
Q psy15087 179 QSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLTD--KLYGESPK 246 (341)
Q Consensus 179 ~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~~--~~~g~~~~ 246 (341)
+.+.. +..++-+|.|+||+|||.++..+|.+. +..++.++.+.+.. +|.|+.++
T Consensus 184 qIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEe 249 (786)
T COG0542 184 QILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEE 249 (786)
T ss_pred HHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHH
Confidence 88765 455677899999999999999999876 56788888887764 78999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc--hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCcH
Q psy15087 247 LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD--HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DIDP 319 (341)
Q Consensus 247 ~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~--~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld~ 319 (341)
+++.+.....+..+.||||||+|.+.+.....+ ..+.+ ++...+. ++.+.+||+|...+ .-|+
T Consensus 250 Rlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaLA---------RGeL~~IGATT~~EYRk~iEKD~ 319 (786)
T COG0542 250 RLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPALA---------RGELRCIGATTLDEYRKYIEKDA 319 (786)
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHHh---------cCCeEEEEeccHHHHHHHhhhch
Confidence 999999999998899999999999988765433 22222 2222222 35688999997643 4589
Q ss_pred HHHccCCceEEecCCCcCC
Q psy15087 320 AIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 320 al~rRf~~~i~i~lP~~e~ 338 (341)
|+.|||.. +.|.-|+.++
T Consensus 320 AL~RRFQ~-V~V~EPs~e~ 337 (786)
T COG0542 320 ALERRFQK-VLVDEPSVED 337 (786)
T ss_pred HHHhcCce-eeCCCCCHHH
Confidence 99999987 9999998753
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.3e-15 Score=148.68 Aligned_cols=141 Identities=20% Similarity=0.245 Sum_probs=100.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|...+... +.+..+||+||||||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~-------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG-------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 778999999999999998887651 456679999999999999999999998763
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.+++.. ......++.+...+. .....|+||||+|.+.. ...+.|+.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHHH
Confidence 22222211 111223444443332 33457999999999842 23566666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
.++. +..++++|.+|+.++.|.++|++|+.. +.+..++.
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls~ 182 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRCQD-FIFKKVPL 182 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhhhe-eeecCCCH
Confidence 6653 345788888999899999999999864 66655543
No 60
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=4.5e-15 Score=136.75 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=107.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+..|++.+|++++|+.|.-++.....+ -...-++|||||||.|||+||..+|+++|..+-..+++.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 678999999999999999888764222 255678999999999999999999999999998888776543
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC--------C------CCCCEE
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT--------D------KNIDII 306 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~--------~------~~~~vi 306 (341)
..-+-.++... ...+|+||||||++.+. . -..|...|+.+.- . +-.++.
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl~~~--------v---EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------V---EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhcChh--------H---HHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 22223333322 23479999999998543 1 2233444443211 0 013588
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
+|+||.+...|...++.||.....+..=+.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~ 183 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTV 183 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCH
Confidence 999999999999999999998777665443
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.3e-15 Score=153.63 Aligned_cols=143 Identities=19% Similarity=0.287 Sum_probs=102.9
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc------------
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------ 227 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------ 227 (341)
.+.+|++|+|++.+++.|.+.+.. -+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 377899999999999999998765 2556778999999999999999999999761
Q ss_pred -----------------EEEeechhhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHH
Q psy15087 228 -----------------FINLDISTLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQL 286 (341)
Q Consensus 228 -----------------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i 286 (341)
++.++... ..+...++++...+. .....|+||||+|.|.. ..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HH
Confidence 11121110 111233444444432 23457999999999842 23
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 287 KSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 287 ~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.+.|+..|+. +..++++|.+||.++.|.+.|++|+.. +.+..++.+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRCq~-f~f~~ls~e 186 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPPG 186 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHHHh-cccCCCChH
Confidence 5667776654 345688888899999999999999854 777777654
No 62
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.61 E-value=1.9e-15 Score=147.60 Aligned_cols=177 Identities=26% Similarity=0.396 Sum_probs=124.4
Q ss_pred ccccc-ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-h
Q psy15087 162 GSWKN-IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD-K 239 (341)
Q Consensus 162 ~~~~d-I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~-~ 239 (341)
..++. |+|++++|+.+..++.....+..+......-..|.++||+||||||||++|+++|..++.+|+.++++.+.. .
T Consensus 11 ~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~G 90 (443)
T PRK05201 11 SELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90 (443)
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCC
Confidence 33433 899999999999988664433222111110123689999999999999999999999999999999988875 5
Q ss_pred hcC-CchHHHHHHHHHHH--------------------------------------------------------------
Q psy15087 240 LYG-ESPKLATAIFSLAE-------------------------------------------------------------- 256 (341)
Q Consensus 240 ~~g-~~~~~i~~lf~~a~-------------------------------------------------------------- 256 (341)
|+| +.+..++.+|..|.
T Consensus 91 yvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd 170 (443)
T PRK05201 91 YVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDD 170 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCC
Confidence 777 33455555554440
Q ss_pred ----------------------------------------------------------------------------hcCC
Q psy15087 257 ----------------------------------------------------------------------------KIQP 260 (341)
Q Consensus 257 ----------------------------------------------------------------------------~~~p 260 (341)
..+.
T Consensus 171 ~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~ 250 (443)
T PRK05201 171 KEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQN 250 (443)
T ss_pred cEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 0145
Q ss_pred eEEEEcccchhhhcCCCCchHH-HHHHHHHHHHHhcCCCCC------CCCCEEEEEEe----CCCCCCcHHHHccCCceE
Q psy15087 261 CIIFIDEIDSLLRSRSSSDHEA-TAQLKSIFLSKWDGLTTD------KNIDIIIMGAT----NRPDDIDPAIARRMPKKY 329 (341)
Q Consensus 261 ~II~IDEiD~l~~~~~~~~~~~-~~~i~~~ll~~ld~~~~~------~~~~viVIatT----N~~~~ld~al~rRf~~~i 329 (341)
+||||||||+++...++..... .+-+++.||..++|-.-. +..++++||+- ..|+++-|.|.-||+.++
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v 330 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRV 330 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEE
Confidence 7999999999987643322233 344788899998873321 12457888774 347778899999999988
Q ss_pred EecCCCcCC
Q psy15087 330 HIKLPLLSS 338 (341)
Q Consensus 330 ~i~lP~~e~ 338 (341)
.+...+.++
T Consensus 331 ~L~~L~~~d 339 (443)
T PRK05201 331 ELDALTEED 339 (443)
T ss_pred ECCCCCHHH
Confidence 887776543
No 63
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=5.8e-15 Score=145.76 Aligned_cols=160 Identities=28% Similarity=0.401 Sum_probs=108.1
Q ss_pred ccCCCCcCccccc-ccCcHHHHHHHHHHhhchhhchhHHhh--cCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 154 LIVPEEINGSWKN-IAGLEHIKKELNQSVIFPMKNRNLLKE--SGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 154 ~v~p~~~~~~~~d-I~G~~~~k~~L~~~v~~pl~~~~~~~~--~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
+..|.+....+++ |+|++.+++.|..++..+.++...... .....+..++||+||||||||++|+++|..++.+|+.
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 4556666777776 899999999998888665443221100 0112345789999999999999999999999999999
Q ss_pred eechhhhh-hhcCCchH-HHHHHHHH----HHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCC---
Q psy15087 231 LDISTLTD-KLYGESPK-LATAIFSL----AEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLT--- 298 (341)
Q Consensus 231 i~~s~l~~-~~~g~~~~-~i~~lf~~----a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~--- 298 (341)
++++.+.. .|+|.... .+..++.. .....++||||||||++....... .......+++.|+..|++..
T Consensus 139 id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v 218 (412)
T PRK05342 139 ADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASV 218 (412)
T ss_pred cchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEe
Confidence 99988764 57776433 34444432 234577999999999997653211 11122356788888888642
Q ss_pred ------CCCCCCEEEEEEeCC
Q psy15087 299 ------TDKNIDIIIMGATNR 313 (341)
Q Consensus 299 ------~~~~~~viVIatTN~ 313 (341)
..+....++|.|+|-
T Consensus 219 ~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 219 PPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred CCCCCcCcCCCCeEEeccCCc
Confidence 111224567777765
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=7.6e-15 Score=147.36 Aligned_cols=143 Identities=20% Similarity=0.263 Sum_probs=100.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC--------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-------------- 226 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-------------- 226 (341)
+.+|++++|++.+++.|...+... +.+.++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 778999999999999988876552 55677999999999999999999999865
Q ss_pred ----------cEEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 227 ----------SFINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 227 ----------~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
.++.++++. ......++.+...+.. ....||||||+|.+.. ..++.|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHHH
Confidence 233333321 1112334555444432 2346999999999842 22455666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.++. ++..+++|++|+.+..+.+++++|+. .+.+..|+.++
T Consensus 140 ~LE~----p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~e 180 (472)
T PRK14962 140 TLEE----PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDEL 180 (472)
T ss_pred HHHh----CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHH
Confidence 6653 23457777777778899999999985 57887776543
No 65
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=5.2e-15 Score=145.41 Aligned_cols=151 Identities=18% Similarity=0.287 Sum_probs=102.4
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE--------------
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF-------------- 228 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------------- 228 (341)
.|++|+|++.+++.|..++......+.. .+ ...+.++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAA---AG-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccc---cC-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 5899999999999999999875332211 12 23577899999999999999999999875531
Q ss_pred ---------EEeechhhhhhhcCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhc
Q psy15087 229 ---------INLDISTLTDKLYGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD 295 (341)
Q Consensus 229 ---------i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld 295 (341)
..+.... ..-....++.++..+... ...|++|||+|.+... ..+.|+..++
T Consensus 79 ~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhh
Confidence 1111100 011223466777665442 3469999999998422 2456777766
Q ss_pred CCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 296 GLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 296 ~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.. +.++++|.+|+.++.+.++|+||+. .+.++.|+.++
T Consensus 143 ep----~~~~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~ 180 (394)
T PRK07940 143 EP----PPRTVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEA 180 (394)
T ss_pred cC----CCCCeEEEEECChHHChHHHHhhCe-EEECCCCCHHH
Confidence 42 2334555555558999999999984 68999887654
No 66
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=1.1e-14 Score=138.99 Aligned_cols=150 Identities=19% Similarity=0.147 Sum_probs=103.4
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
..+.+|++++|++.+++.+...+.. + ..+..+||+||||+|||++|++++++++.+++.++++. .
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~- 79 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKK-----------G--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C- 79 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhc-----------C--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-
Confidence 3478899999999999999888753 1 44666777999999999999999999999999888876 1
Q ss_pred hhcCCchHHHHHHHHHHH-hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCC
Q psy15087 239 KLYGESPKLATAIFSLAE-KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~-~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~l 317 (341)
. .......+........ ...+.||+|||+|.+... + . ...+...++.. ..++.+|+++|.++.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~-~---~~~L~~~le~~----~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------D-A---QRHLRSFMEAY----SKNCSFIITANNKNGI 144 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------H-H---HHHHHHHHHhc----CCCceEEEEcCChhhc
Confidence 1 1111111211111111 125689999999987211 1 1 22333334432 2356788899999999
Q ss_pred cHHHHccCCceEEecCCCcCCC
Q psy15087 318 DPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 318 d~al~rRf~~~i~i~lP~~e~R 339 (341)
.+++++||. .+.++.|+.+++
T Consensus 145 ~~~l~sR~~-~i~~~~p~~~~~ 165 (316)
T PHA02544 145 IEPLRSRCR-VIDFGVPTKEEQ 165 (316)
T ss_pred hHHHHhhce-EEEeCCCCHHHH
Confidence 999999996 588888886653
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=9.5e-15 Score=150.89 Aligned_cols=142 Identities=19% Similarity=0.283 Sum_probs=100.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|...+.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 77899999999999999988754 2456678999999999999999999998752
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.++... ......++.+...+.. ....|+||||+|.|.. ...+.|+.
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHHH
Confidence 12222110 1112234555544432 2457999999999842 22455666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.|+. ...++.+|.+||.++.|.+.|++|+.. +.|..++.+
T Consensus 142 tLEE----PP~~v~FILaTtd~~KIp~TIrSRCq~-f~Fk~Ls~e 181 (830)
T PRK07003 142 TLEE----PPPHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPAG 181 (830)
T ss_pred HHHh----cCCCeEEEEEECChhhccchhhhheEE-EecCCcCHH
Confidence 6653 234688888999999999999999844 666655443
No 68
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-14 Score=146.36 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=109.1
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-------
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD------- 238 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~------- 238 (341)
|-.|++.+|+.+.+.+.-.... . -....-++|+||||+|||+|+++||..+|..|+.++...+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~-~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------K-KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------c-cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 5689999999998876532111 1 122345889999999999999999999999999998765543
Q ss_pred --hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHH-----HHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 239 --KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLK-----SIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 239 --~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~-----~~ll~~ld~~~~~~~~~viVIatT 311 (341)
.|+|.....+-+-+..+....| +++|||||++..+-.+....+..+++ +.|....-.+.-+ -++|++|||+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD-LS~VmFiaTA 473 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD-LSKVMFIATA 473 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc-hhheEEEeec
Confidence 4888888887777788887776 88899999997665443333322222 1122111111111 2469999999
Q ss_pred CCCCCCcHHHHccCCc
Q psy15087 312 NRPDDIDPAIARRMPK 327 (341)
Q Consensus 312 N~~~~ld~al~rRf~~ 327 (341)
|..+.|+.+|++|+..
T Consensus 474 Nsl~tIP~PLlDRMEi 489 (782)
T COG0466 474 NSLDTIPAPLLDRMEV 489 (782)
T ss_pred CccccCChHHhcceee
Confidence 9999999999999865
No 69
>KOG2004|consensus
Probab=99.57 E-value=2e-14 Score=145.53 Aligned_cols=152 Identities=26% Similarity=0.414 Sum_probs=108.3
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-------
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD------- 238 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~------- 238 (341)
|-.|++++|+.+.+++.-... + | ....+-++|+||||+|||+++++||..+|..|+.++...+..
T Consensus 412 DHYgm~dVKeRILEfiAV~kL-----r--g-s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL-----R--G-SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh-----c--c-cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 578999999999988753211 1 1 234556899999999999999999999999999988765543
Q ss_pred --hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHH-----HHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 239 --KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLK-----SIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 239 --~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~-----~~ll~~ld~~~~~~~~~viVIatT 311 (341)
.|+|.....+-+.+..+....| +++|||+|++....++....+..+++ +.|+...-.+..+ -.+|++|||+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D-LSkVLFicTA 561 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD-LSKVLFICTA 561 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc-hhheEEEEec
Confidence 4788888888888887777676 88899999997433333222222221 1122211112221 2469999999
Q ss_pred CCCCCCcHHHHccCCc
Q psy15087 312 NRPDDIDPAIARRMPK 327 (341)
Q Consensus 312 N~~~~ld~al~rRf~~ 327 (341)
|..+.|+++++.|+..
T Consensus 562 N~idtIP~pLlDRMEv 577 (906)
T KOG2004|consen 562 NVIDTIPPPLLDRMEV 577 (906)
T ss_pred cccccCChhhhhhhhe
Confidence 9999999999999865
No 70
>KOG0736|consensus
Probab=99.55 E-value=3.1e-14 Score=145.13 Aligned_cols=139 Identities=21% Similarity=0.323 Sum_probs=116.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS 278 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~ 278 (341)
....|||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|+.++|+|||+-++|.+..++.++
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg 509 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG 509 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc
Confidence 34569999999999999999999999999999999999999889999999999999999999999999999998666554
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 279 DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 279 ~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
........++.++. .+... ....+++|||+++..+.+++.+++-|...+.++.|+.+||
T Consensus 510 ed~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 510 EDARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQR 568 (953)
T ss_pred hhHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHH
Confidence 33333333444443 22222 2345799999999999999999999999999999999998
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=2.7e-14 Score=141.70 Aligned_cols=139 Identities=24% Similarity=0.385 Sum_probs=98.2
Q ss_pred CcccccccCcHHHHHH---HHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKE---LNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~---L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.+|++++|++++... |...+.. ....+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 5679999999998666 7766643 334589999999999999999999999999999887542
Q ss_pred hhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC-
Q psy15087 238 DKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN- 312 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN- 312 (341)
....++.++..+. .....||||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc------CcEEEEEeCCC
Confidence 1223444444442 235689999999997422 23445555542 3466776653
Q ss_pred -CCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 313 -RPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 313 -~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
....+++++++|+ ..+.+..|+.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~ 155 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEED 155 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHH
Confidence 3457899999998 457777776543
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.7e-14 Score=147.21 Aligned_cols=142 Identities=21% Similarity=0.301 Sum_probs=101.2
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF------------ 228 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~------------ 228 (341)
+.+|++|+|++.+++.|...+.. .+.+..+||+||+|||||++|+.+|+.+++..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 67899999999999999888765 14566789999999999999999999987631
Q ss_pred ------------EEeechhhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 229 ------------INLDISTLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 229 ------------i~i~~s~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
+.+++.. ......++.+...+. .....|+||||+|.|.. ...+.|+.
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHHH
Confidence 2222111 011233455444433 23457999999999842 23566777
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.|+. +..++++|.+|+.++.|.+.|++|+ ..+.+..++.+
T Consensus 142 tLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ 181 (647)
T PRK07994 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVE 181 (647)
T ss_pred HHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHH
Confidence 6664 3456778888888899999999996 55777777654
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.54 E-value=1.8e-13 Score=113.23 Aligned_cols=139 Identities=39% Similarity=0.603 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCch
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGESP 245 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~~ 245 (341)
|.+.+.+.+...+.. ....+++++||||||||++++.++..+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 455666666555432 345689999999999999999999998 889999988776554322211
Q ss_pred HH---HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC--CCCCEEEEEEeCCCC--CCc
Q psy15087 246 KL---ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD--KNIDIIIMGATNRPD--DID 318 (341)
Q Consensus 246 ~~---i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~--~~~~viVIatTN~~~--~ld 318 (341)
.. ....+.......+++|++||++.+... . ...++..+...... ...++.+|+++|... .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------A----QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhhHH-------H----HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 11 122233444557799999999987211 1 12233333222211 124588888998876 788
Q ss_pred HHHHccCCceEEec
Q psy15087 319 PAIARRMPKKYHIK 332 (341)
Q Consensus 319 ~al~rRf~~~i~i~ 332 (341)
+.+.+||+.++.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998666554
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.3e-14 Score=145.48 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=100.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|..++.. .+.+..+||+||||+|||++|+++|+.+++.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 67899999999999999998764 2557789999999999999999999998762
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.+++++ ......++.+...+. ..+..|++|||+|.|... ..+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------SFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------HHHHHHH
Confidence 22232221 112233455544332 234579999999998421 2456666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++.. +..+.+|.+|+.+..+.+.+++|+.. +.+..++.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRCq~-feFkpLs~e 180 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRCLQ-FTLRPLAVD 180 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhhhe-eeccCCCHH
Confidence 66642 34567777788888888999999854 777766654
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.9e-14 Score=148.81 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=99.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE-------Ee-e
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI-------NL-D 232 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i-------~i-~ 232 (341)
+.+|++|+|++.+++.|+.++.. -+.+..+||+||||||||++|+++|+.+++.-. .+ .
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 67899999999999999888754 145667899999999999999999999976411 00 0
Q ss_pred chhhhhh-------hcC---CchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC
Q psy15087 233 ISTLTDK-------LYG---ESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 233 ~s~l~~~-------~~g---~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~ 298 (341)
|-.+... +.+ .....++.+...+. .....|+||||+|.|. ....+.|+..|+.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE-- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE-- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc--
Confidence 1111110 001 11233455544333 2345799999999983 2345667776664
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 299 TDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
++.++++|++|+.+..|.+.|++|+. ++.+..++.
T Consensus 146 --PP~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpLs~ 180 (944)
T PRK14949 146 --PPEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSLTQ 180 (944)
T ss_pred --cCCCeEEEEECCCchhchHHHHHhhe-EEeCCCCCH
Confidence 33467777788888889999999974 466665544
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3e-14 Score=144.36 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=99.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 77899999999999999998865 2556779999999999999999999999763
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.++++. ......++.+...+.. ....|++|||+|.+... ..+.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHHHH
Confidence 33333221 1122334555444332 23479999999998422 2456666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
.++.. +.++.+|.+|+.++.+.+.+++|+.. +.+..++.
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc~~-~~f~~l~~ 180 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRCLQ-FHLAQLPP 180 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHhhh-hhcCCCCH
Confidence 66642 34577777778888888899999854 66655443
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=9.5e-14 Score=135.54 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=99.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE--------ee
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN--------LD 232 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~--------i~ 232 (341)
+.+|++|+|++.+++.|...+.. -+.+..+||+||||+|||++|+++|+.+++.... .+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 67899999999999999888754 1456778999999999999999999998643110 00
Q ss_pred chhhhhh----------hcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC
Q psy15087 233 ISTLTDK----------LYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 233 ~s~l~~~----------~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~ 298 (341)
|.++... ........++.+...+.. ....|++|||+|.+.. ...+.|+..++..
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~lEe~- 146 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTLEEP- 146 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHHhcC-
Confidence 1111000 000122334555544432 2346999999999832 2234566666542
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 299 TDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+..+.+|.+|+.++.+.+++++|+ ..+.++.|+.++
T Consensus 147 ---~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~e 182 (363)
T PRK14961 147 ---PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEK 182 (363)
T ss_pred ---CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHH
Confidence 345667777777888999999998 457888877654
No 78
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=4.2e-14 Score=139.28 Aligned_cols=160 Identities=31% Similarity=0.451 Sum_probs=106.9
Q ss_pred ccCCCCcCccccc-ccCcHHHHHHHHHHhhchhhchhHH--h--hcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE
Q psy15087 154 LIVPEEINGSWKN-IAGLEHIKKELNQSVIFPMKNRNLL--K--ESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF 228 (341)
Q Consensus 154 ~v~p~~~~~~~~d-I~G~~~~k~~L~~~v~~pl~~~~~~--~--~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~ 228 (341)
+..|......+++ |+|++++++.+..++....+..... . ..+......++||+||||||||++|+++|..++.+|
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 3455566667776 7999999999988886543332110 0 011112356899999999999999999999999999
Q ss_pred EEeechhhhh-hhcCCc-hHHHHHHHHH----HHhcCCeEEEEcccchhhhcCCCCc---hHHHHHHHHHHHHHhcCCCC
Q psy15087 229 INLDISTLTD-KLYGES-PKLATAIFSL----AEKIQPCIIFIDEIDSLLRSRSSSD---HEATAQLKSIFLSKWDGLTT 299 (341)
Q Consensus 229 i~i~~s~l~~-~~~g~~-~~~i~~lf~~----a~~~~p~II~IDEiD~l~~~~~~~~---~~~~~~i~~~ll~~ld~~~~ 299 (341)
..+++..+.. .|+|.. +..+...+.. .....++||||||+|++.+.+...+ ......+++.|+..|+|...
T Consensus 145 ~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~ 224 (413)
T TIGR00382 145 AIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVA 224 (413)
T ss_pred EEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccce
Confidence 9999888754 467764 3344444332 2345678999999999986533211 11123567788888876542
Q ss_pred C---------CCCCEEEEEEeCC
Q psy15087 300 D---------KNIDIIIMGATNR 313 (341)
Q Consensus 300 ~---------~~~~viVIatTN~ 313 (341)
. +..+.++|.|+|-
T Consensus 225 ~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 225 NVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred ecccCCCccccCCCeEEEEcCCc
Confidence 1 1235778888886
No 79
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=1.1e-13 Score=145.81 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=106.6
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCC---CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh----
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGL---LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD---- 238 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~---~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~---- 238 (341)
.|+|++++++.|.+.+.... .|+ .+|..++||+||||||||.+|+++|..++.+|+.++++++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 38999999999999886531 121 134457999999999999999999999999999999987643
Q ss_pred -hhcCCchHHH-----HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-CCC------CCCE
Q psy15087 239 -KLYGESPKLA-----TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-TDK------NIDI 305 (341)
Q Consensus 239 -~~~g~~~~~i-----~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-~~~------~~~v 305 (341)
..+|.....+ ..+....+..+.+||||||||++. ..+.+.|+..++... ... -.++
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 2333221111 123334455567999999999973 345677777776321 111 1368
Q ss_pred EEEEEeCCC-------------------------CCCcHHHHccCCceEEecCCCcC
Q psy15087 306 IIMGATNRP-------------------------DDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 306 iVIatTN~~-------------------------~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++|+|||.- ..+.|.++.|++..+.|+..+.+
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~ 656 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTD 656 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHH
Confidence 899999932 12558889999987877766544
No 80
>KOG0735|consensus
Probab=99.50 E-value=6.9e-14 Score=141.57 Aligned_cols=162 Identities=22% Similarity=0.283 Sum_probs=122.4
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhhhh
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTDKL 240 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~~~ 240 (341)
.|++-...+|++..+....| +-.+.++||+||+|||||.|+++++.++ -+.+..++|+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp------------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP------------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc------------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 45677777777776644443 2446689999999999999999999987 3567789999988777
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC---CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCC
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS---SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~---~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~l 317 (341)
.....+.++.+|..+.+++|+||++|++|.+++... +.......+ +..+++.+-......+..+.+|++.+..+.+
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~r-la~flnqvi~~y~~~~~~ia~Iat~qe~qtl 554 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSER-LAAFLNQVIKIYLKRNRKIAVIATGQELQTL 554 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHH-HHHHHHHHHHHHHccCcEEEEEEechhhhhc
Confidence 777788899999999999999999999999987322 222223333 3444433322222334568999999999999
Q ss_pred cHHHHc--cCCceEEecCCCcCCC
Q psy15087 318 DPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 318 d~al~r--Rf~~~i~i~lP~~e~R 339 (341)
.+-+.+ +|+..+.++.|+.++|
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 555 NPLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred ChhhcCccceEEEEecCCcchhHH
Confidence 998888 8888888888888776
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=99.50 E-value=1.2e-13 Score=132.42 Aligned_cols=143 Identities=20% Similarity=0.151 Sum_probs=95.4
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----cEEEeech
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-----SFINLDIS 234 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-----~~i~i~~s 234 (341)
.+.+|++++|++++++.|+..+.. ....++||+||||||||++|+++|+++.. .++.++.+
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD--------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 477899999999999999876543 22346999999999999999999999732 34555554
Q ss_pred hhhhhhcCCchHHHHHHHHH-HH------hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy15087 235 TLTDKLYGESPKLATAIFSL-AE------KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIII 307 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~-a~------~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viV 307 (341)
+..+ ...++..... +. ...+.|++|||+|.+... ..+.|+..++.. ...+.+
T Consensus 74 d~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~----~~~t~~ 132 (319)
T PLN03025 74 DDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIY----SNTTRF 132 (319)
T ss_pred cccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcc----cCCceE
Confidence 3211 1122322221 11 123579999999998432 134445545432 223556
Q ss_pred EEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 308 MGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 308 IatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
|.++|.++.+.+++++|+. .+.++.|+.++
T Consensus 133 il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~ 162 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRCA-IVRFSRLSDQE 162 (319)
T ss_pred EEEeCCccccchhHHHhhh-cccCCCCCHHH
Confidence 7788888889999999974 47777776543
No 82
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.7e-14 Score=130.70 Aligned_cols=177 Identities=28% Similarity=0.387 Sum_probs=118.6
Q ss_pred CCchhhHHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCccccc-ccCcHHHHHHHHHHhhchhhchhHHhh
Q psy15087 115 GTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKN-IAGLEHIKKELNQSVIFPMKNRNLLKE 193 (341)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~d-I~G~~~~k~~L~~~v~~pl~~~~~~~~ 193 (341)
|.+.+...++...+.+.+++-.... . +......+..|.++...+++ |+|++.+|+.|.-++....++-.....
T Consensus 16 gp~v~ICdeCielc~~ii~ee~~~~---~---~~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~ 89 (408)
T COG1219 16 GPGVYICDECIELCNDIIREELKEA---L---DEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKED 89 (408)
T ss_pred CCCceehHHHHHHHHHHHHHhhhhh---c---cchhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCC
Confidence 3333455566666666665422211 1 11122345566666777777 899999999998888775444322111
Q ss_pred -cCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-hhcCCchH-HHHHHHHHH----HhcCCeEEEEc
Q psy15087 194 -SGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD-KLYGESPK-LATAIFSLA----EKIQPCIIFID 266 (341)
Q Consensus 194 -~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~-~~~g~~~~-~i~~lf~~a----~~~~p~II~ID 266 (341)
....-..+++||.||.|||||.||+.+|..++.||-..++..+.+ .|+|+... .+..+.+.| .+.+.+||+||
T Consensus 90 ~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyID 169 (408)
T COG1219 90 NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYID 169 (408)
T ss_pred CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEe
Confidence 111234578999999999999999999999999999999999987 47888654 345555433 34466999999
Q ss_pred ccchhhhcCCCCc---hHHHHHHHHHHHHHhcCC
Q psy15087 267 EIDSLLRSRSSSD---HEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 267 EiD~l~~~~~~~~---~~~~~~i~~~ll~~ld~~ 297 (341)
|||++.......+ .-..+-+++.|+..++|.
T Consensus 170 EIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 170 EIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 9999986643221 112355678899998864
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=1.3e-13 Score=139.25 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=103.1
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE----------
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI---------- 229 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i---------- 229 (341)
.+.+|+|++|++.+++.|..++.. -+.+.++||+||||||||++|+++|+.+++..-
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 478899999999999999887654 256778999999999999999999999976321
Q ss_pred --Eeechhhhhhh----------cCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 230 --NLDISTLTDKL----------YGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 230 --~i~~s~l~~~~----------~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
.-+|..+.... ...+...++.+...+... ...|++|||+|.+.. ...+.|+..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk~ 151 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLKT 151 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHHH
Confidence 01111111110 012234566666665432 347999999999832 224556665
Q ss_pred hcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 294 WDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 294 ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++. ++..+++|.+|+.++.+.+++++|+. .+.+..++.++
T Consensus 152 LEe----pp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~e 191 (507)
T PRK06645 152 LEE----PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEE 191 (507)
T ss_pred Hhh----cCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHH
Confidence 553 23457777778888889999999984 57777776543
No 84
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=2.3e-13 Score=137.61 Aligned_cols=150 Identities=24% Similarity=0.298 Sum_probs=103.4
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
..+.+|++|+|++.+++.|...+.... .| .+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g--~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWL--------KG--KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC--CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 347789999999999999999876532 12 45789999999999999999999999999999998876432
Q ss_pred hhcCCchHHHHHHHHHHHh------cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 239 KLYGESPKLATAIFSLAEK------IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~------~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
...+..+...+.. ..+.||+|||+|.+.+.... . ....++..++. .+..+|+++|
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~---~----~~~aL~~~l~~------~~~~iIli~n 138 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR---G----GARAILELIKK------AKQPIILTAN 138 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch---h----HHHHHHHHHHc------CCCCEEEecc
Confidence 1122222222211 24689999999998642111 1 12334444431 1244667788
Q ss_pred CCCCCcH-HHHccCCceEEecCCCcCC
Q psy15087 313 RPDDIDP-AIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 313 ~~~~ld~-al~rRf~~~i~i~lP~~e~ 338 (341)
.+..+.. .+++|+ ..+.|+.|+.++
T Consensus 139 ~~~~~~~k~Lrsr~-~~I~f~~~~~~~ 164 (482)
T PRK04195 139 DPYDPSLRELRNAC-LMIEFKRLSTRS 164 (482)
T ss_pred CccccchhhHhccc-eEEEecCCCHHH
Confidence 8888877 666665 558888887654
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.1e-13 Score=138.99 Aligned_cols=142 Identities=22% Similarity=0.272 Sum_probs=101.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|+||+|++.+++.|..++.. -+.+.++||+||||+|||++|+.+|+.+++.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 67899999999999999887654 2567789999999999999999999987542
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.+++++ ..+...++.+...+.. ....|++|||+|.+.. ...+.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHHH
Confidence 23333321 1123345666555543 2447999999999842 23456677
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++.. +..+.+|.+|+.++.+.+.+++|+.. +.+..++.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc~~-~~f~~l~~~ 178 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRCQR-FDLQKIPTD 178 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhhee-eecccccHH
Confidence 66642 34577777778888899999999854 777666544
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.4e-13 Score=139.28 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=99.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 77899999999999999988765 1456667999999999999999999988541
Q ss_pred ----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 228 ----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 228 ----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
++.++.+. ......++.+...+.. ..+.||+|||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 22222210 1112334444333322 345799999999863 2234566666
Q ss_pred hcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 294 WDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 294 ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++.. ..++++|.+++.+..+.+.+.+|+. .+.+..|+.+
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~ 178 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEE 178 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHH
Confidence 6542 2357777778888999999999976 4788777654
No 87
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.48 E-value=4.7e-13 Score=122.18 Aligned_cols=150 Identities=19% Similarity=0.281 Sum_probs=110.9
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
..+.+++++|.+.+|+.|.+-....+. | .+..++||||++|||||+++|++..++ |..++.+....+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G--~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--------G--LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--------C--CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 378899999999999999877655432 2 678899999999999999999998876 678888876665
Q ss_pred hhhhcCCchHHHHHHHHHHHh-cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEK-IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~-~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
.. +..++...+. ..+-|||+|++.- .. .+.-...|...|+|-....+.++++.+|+|+.+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLsF-----e~-----~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLSF-----EE-----GDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCCC-----CC-----CcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 32 3444444443 2457999999642 11 112246677788888777788999999999854
Q ss_pred CCcH-----------------------HHHccCCceEEecCCCcCC
Q psy15087 316 DIDP-----------------------AIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 316 ~ld~-----------------------al~rRf~~~i~i~lP~~e~ 338 (341)
.+.+ +|..||...+.|..|+.++
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~ 198 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEE 198 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHH
Confidence 3321 5556999999999998764
No 88
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.48 E-value=1.3e-13 Score=145.88 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=103.9
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-------
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD------- 238 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~------- 238 (341)
+..|++.+|+.+.+.+...... + ......++|+||||||||++++.+|..++.+|+.++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~-~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------N-KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------c-cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999998876642211 1 123446999999999999999999999999999888665432
Q ss_pred --hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC---------C--CCCCCCE
Q psy15087 239 --KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL---------T--TDKNIDI 305 (341)
Q Consensus 239 --~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~---------~--~~~~~~v 305 (341)
.|.|.....+...+..+.... .||+|||+|++....++.. ...|+..+|.- . .-+-.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g~~-------~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRGDP-------ASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCCCH-------HHHHHHHhccccEEEEecccccccccCCce
Confidence 245555555555555444334 4899999999976533211 23445555421 0 0112468
Q ss_pred EEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 306 IIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 306 iVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
++|||+|.. .|++++++||.. +.+..++.
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~~i-i~~~~~t~ 495 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRMEV-IRLSGYTE 495 (784)
T ss_pred EEEEcCCCC-CCCHHHhcceee-eecCCCCH
Confidence 999999987 599999999964 55555544
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.8e-13 Score=140.37 Aligned_cols=142 Identities=25% Similarity=0.320 Sum_probs=101.6
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 77899999999999999998765 2557779999999999999999999988642
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.++++ .+.....++.+...+.. ....|++|||+|.|.. ...+.|+.
T Consensus 79 C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHHH
Confidence 2222221 11223445666655443 2347999999999832 23456666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++. ++..+++|.+|+.++.+.+.+++|+.. +.+..|+.+
T Consensus 142 tLEe----pp~~~ifIlatt~~~ki~~tI~SRc~~-~~f~~~~~~ 181 (559)
T PRK05563 142 TLEE----PPAHVIFILATTEPHKIPATILSRCQR-FDFKRISVE 181 (559)
T ss_pred HhcC----CCCCeEEEEEeCChhhCcHHHHhHheE-EecCCCCHH
Confidence 6654 234577777778889999999999864 777777653
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.9e-13 Score=137.66 Aligned_cols=142 Identities=22% Similarity=0.243 Sum_probs=97.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|...+.. .+.+..+||+||||||||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 67899999999999999888754 1456679999999999999999999988651
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.+++.. ......++.+...+. .....|++|||+|.+.. ...+.|+.
T Consensus 79 C~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHHH
Confidence 22222111 011122344444333 23457999999999832 23566777
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++.. +..+++|.+|+.+..+.+.+++|+ ..+.+..++.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~ 181 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQA 181 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHH
Confidence 77642 345666666677888888899998 44788777654
No 91
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.9e-13 Score=138.73 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=99.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE-------EE-ee
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF-------IN-LD 232 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------i~-i~ 232 (341)
+.+|++|+|++.+++.|+..+.. -+.++.+||+||+|||||++|+++|+.+++.- -. -+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 67899999999999999998765 25566789999999999999999999887521 00 00
Q ss_pred chhhhh------h---hcCC---chHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC
Q psy15087 233 ISTLTD------K---LYGE---SPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG 296 (341)
Q Consensus 233 ~s~l~~------~---~~g~---~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~ 296 (341)
|..+.. . .-+. ....++.+...+. .....|++|||+|.+.. ...+.|+..|+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NALLK~LEE 144 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNALLKIVEE 144 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHHHHHHHhc
Confidence 111100 0 0011 1223344433332 23457999999999842 235667777764
Q ss_pred CCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 297 LTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 297 ~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++.++++|.+|+.++.+.++|++|+ ..+.|..++.+
T Consensus 145 ----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~ 180 (584)
T PRK14952 145 ----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPR 180 (584)
T ss_pred ----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHH
Confidence 3346777878888889999999996 45877766543
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=2.5e-13 Score=144.08 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=98.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE-------E-ee
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI-------N-LD 232 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i-------~-i~ 232 (341)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.++|.-- . -+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 77899999999999999988764 255667999999999999999999999975210 0 01
Q ss_pred chhhhhh---------hcCC---chHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC
Q psy15087 233 ISTLTDK---------LYGE---SPKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG 296 (341)
Q Consensus 233 ~s~l~~~---------~~g~---~~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~ 296 (341)
|..+... ..+. ....++.+...+ ......|+||||+|.|.. ...+.|+..|+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~NaLLK~LEE 146 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNALLKIVEE 146 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHHHHHHHhC
Confidence 1111000 0010 122233333222 234557999999999842 235667777765
Q ss_pred CCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 297 LTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 297 ~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
. ..++++|.+|+.++.|-+.|++|+. .+.|..++.
T Consensus 147 p----P~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~ 181 (824)
T PRK07764 147 P----PEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPP 181 (824)
T ss_pred C----CCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCH
Confidence 3 3457777777888889899999975 477776654
No 93
>KOG0989|consensus
Probab=99.47 E-value=2.6e-13 Score=126.33 Aligned_cols=147 Identities=24% Similarity=0.274 Sum_probs=99.1
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc------EEEeec
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------FINLDI 233 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------~i~i~~ 233 (341)
.+-+|+++.|++.+++.|...+.. +...++|||||||||||+.|+++|.+++++ +...+.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 477899999999999999998754 334579999999999999999999999762 222333
Q ss_pred hhhhhhhc-CCchHHHHHHHHHH-----HhcCC-eEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy15087 234 STLTDKLY-GESPKLATAIFSLA-----EKIQP-CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDII 306 (341)
Q Consensus 234 s~l~~~~~-g~~~~~i~~lf~~a-----~~~~p-~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~vi 306 (341)
+...+..+ .+..+....+.... ..++| .||+|||.|.+.. ..++.|...|+.. ...++
T Consensus 97 SderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~----s~~tr 161 (346)
T KOG0989|consen 97 SDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDF----SRTTR 161 (346)
T ss_pred cccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcc----ccceE
Confidence 33222211 11111111111111 11233 6999999999843 3356677777653 24578
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCCC
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP~ 335 (341)
+|..||..+.|...+.+|+.+..+=++++
T Consensus 162 FiLIcnylsrii~pi~SRC~KfrFk~L~d 190 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVSRCQKFRFKKLKD 190 (346)
T ss_pred EEEEcCChhhCChHHHhhHHHhcCCCcch
Confidence 88889999999999999987744444444
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=2.4e-13 Score=140.16 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=100.2
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE--------e
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN--------L 231 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~--------i 231 (341)
.+.+|++|+|++.+++.|...+.. -+.+.++||+||+|||||++|+++|+.+++.-.. -
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 377899999999999999998765 2567789999999999999999999998653110 0
Q ss_pred echhhhhh----------hcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 232 DISTLTDK----------LYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 232 ~~s~l~~~----------~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
.|..+... ........++.++..+.. ....|+||||+|.+.. ...+.|+..|+..
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLEEP 146 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLEEP 146 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHHhC
Confidence 01111000 011223345566554432 2447999999998732 2245666666642
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
...+.+|.+|+.+..+.+.+++|+.. +.+..++.+
T Consensus 147 ----p~~v~fILaTtd~~kL~~TIrSRC~~-f~f~~Ls~e 181 (709)
T PRK08691 147 ----PEHVKFILATTDPHKVPVTVLSRCLQ-FVLRNMTAQ 181 (709)
T ss_pred ----CCCcEEEEEeCCccccchHHHHHHhh-hhcCCCCHH
Confidence 34577777888888999999999843 666555543
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.6e-13 Score=138.44 Aligned_cols=142 Identities=26% Similarity=0.293 Sum_probs=99.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++++|++.+++.|..++.. .+.+.++||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 77899999999999999887754 2556789999999999999999999988542
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.++++. ......++.+...+... ...|++|||+|.+.. ...+.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHHH
Confidence 11121111 01122345555444332 346999999999832 12456666
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++. ++..+++|.+|+.++.+.+++++|+.. +.+..|+.+
T Consensus 142 tLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRcq~-ieF~~Ls~~ 181 (605)
T PRK05896 142 TLEE----PPKHVVFIFATTEFQKIPLTIISRCQR-YNFKKLNNS 181 (605)
T ss_pred HHHh----CCCcEEEEEECCChHhhhHHHHhhhhh-cccCCCCHH
Confidence 6664 234577777888889999999999864 777777654
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-13 Score=139.74 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=99.8
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE-E-eec-----
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI-N-LDI----- 233 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i-~-i~~----- 233 (341)
+.+|++|+|++.+++.|...+.. -+.+..+||+||||+|||++|+.+|+.+++..- . -.|
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 67899999999999999988765 255677899999999999999999999876311 0 000
Q ss_pred -hhhhhh----------hcCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC
Q psy15087 234 -STLTDK----------LYGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 234 -s~l~~~----------~~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~ 298 (341)
..+... ........++.+...+... ...|++|||+|.+.. ...+.|+..++.
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLLK~LEe-- 145 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAMLKTLEE-- 145 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHHHHHhC--
Confidence 000000 0011233456666555432 346999999999842 234567776664
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 299 TDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++..+++|.+|+.++.+.+.+++|+. .+.+..|+.+
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l~~~ 181 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPP 181 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHHHHH-HHhcCCCCHH
Confidence 23457777777888888888999974 4777766543
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.2e-13 Score=138.96 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=98.8
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF------------ 228 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~------------ 228 (341)
+.+|++|+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++.-
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 67899999999999999998765 25567789999999999999999999987521
Q ss_pred -EEeechhhhhh----h------cCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 229 -INLDISTLTDK----L------YGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 229 -i~i~~s~l~~~----~------~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
..-+|..+... + .......++.+...+... ...|++|||+|.|... ..+.|+..
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaLLKt 147 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAMLKT 147 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHHHHh
Confidence 00011111110 0 011223455555544322 2469999999998422 24556666
Q ss_pred hcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 294 WDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 294 ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++. +...+.+|.+|+.++.+.+.+++|+. .+.+..++.+
T Consensus 148 LEE----PP~~~~fIL~Ttd~~kil~TIlSRc~-~~~f~~Ls~e 186 (618)
T PRK14951 148 LEE----PPEYLKFVLATTDPQKVPVTVLSRCL-QFNLRPMAPE 186 (618)
T ss_pred ccc----CCCCeEEEEEECCchhhhHHHHHhce-eeecCCCCHH
Confidence 553 33457777777788888889999974 4777666543
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=4e-13 Score=137.71 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=97.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|..++.. -+.+.++||+||||||||++|+.+|+.+++.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 77899999999999999988764 1446689999999999999999999999753
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.+++.. ......++.+...+ ......||||||+|.+.. ...+.|+.
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLLk 141 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALLK 141 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHHH
Confidence 22222211 01112233332222 223457999999999842 22456676
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++.. ..++++|++||.++.+.+.+++|+.. +.|..++.+
T Consensus 142 ~LEEP----~~~~ifILaTt~~~kll~TI~SRcq~-i~F~pLs~~ 181 (624)
T PRK14959 142 TLEEP----PARVTFVLATTEPHKFPVTIVSRCQH-FTFTRLSEA 181 (624)
T ss_pred Hhhcc----CCCEEEEEecCChhhhhHHHHhhhhc-cccCCCCHH
Confidence 66542 24577888888888888999999854 677666543
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.9e-13 Score=139.32 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=99.7
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+.+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 67899999999999999998764 2567788999999999999999999998653
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.+++.. ......++.+...+.. ....|++|||+|.+.. ...+.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHHH
Confidence 12222111 1112345555554432 2346999999999842 22456777
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
.|+. +..++++|.+|+.++.|.+.+++|+.. +.|..++.
T Consensus 142 ~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc~~-~~f~~l~~ 180 (576)
T PRK14965 142 TLEE----PPPHVKFIFATTEPHKVPITILSRCQR-FDFRRIPL 180 (576)
T ss_pred HHHc----CCCCeEEEEEeCChhhhhHHHHHhhhh-hhcCCCCH
Confidence 6664 334677888888889999999999754 66665544
No 100
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=4.8e-13 Score=138.97 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=103.6
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE---eechhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN---LDISTL 236 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~---i~~s~l 236 (341)
.+.+|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+.--. -.|...
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 378999999999999999998865 1557789999999999999999999998663210 011100
Q ss_pred ---hh---hh---cC---CchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC
Q psy15087 237 ---TD---KL---YG---ESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD 300 (341)
Q Consensus 237 ---~~---~~---~g---~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~ 300 (341)
.. .+ -+ .+...++.+...+.. ....|++|||+|.+.. ...+.|+..|+.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEE---- 144 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEE---- 144 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhc----
Confidence 00 00 01 123345666655543 3447999999999842 235567776664
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 301 KNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 301 ~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++..+++|.+|+.++.|.+++++|+. ++.+..|+.+
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~e 180 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISED 180 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHH
Confidence 23457778788888999999999986 5888777654
No 101
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.44 E-value=8.7e-14 Score=124.35 Aligned_cols=145 Identities=20% Similarity=0.296 Sum_probs=68.0
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC-----------------
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN----------------- 225 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~----------------- 225 (341)
.|+||.|++.+|+.|.-+... ..++||+||||||||++|+++...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~ 64 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVA 64 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT-
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccc
Confidence 478999999999999777532 46899999999999999999988662
Q ss_pred -----------CcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHh
Q psy15087 226 -----------VSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKW 294 (341)
Q Consensus 226 -----------~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~l 294 (341)
.||.....+.-....+|......-..+..|.. +|||+||+..+ ...++..|..-+
T Consensus 65 ~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef-----------~~~vld~Lr~pl 130 (206)
T PF01078_consen 65 GLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF-----------DRSVLDALRQPL 130 (206)
T ss_dssp --S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS------------HHHHHHHHHHH
T ss_pred cCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc-----------CHHHHHHHHHHH
Confidence 12222211111111122211111112233333 89999999876 344556666655
Q ss_pred cCC---------CCCCCCCEEEEEEeCCC-----------------------CCCcHHHHccCCceEEecCCCcC
Q psy15087 295 DGL---------TTDKNIDIIIMGATNRP-----------------------DDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 295 d~~---------~~~~~~~viVIatTN~~-----------------------~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+.- ....+.++++|+|+|.= ..+...+++||+..+.++..+.+
T Consensus 131 e~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 131 EDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp HHSBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred HCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 421 11223468999999851 13667888899877766655543
No 102
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=1e-12 Score=122.76 Aligned_cols=126 Identities=17% Similarity=0.269 Sum_probs=83.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh------hhhhhcCCchH-HHH-------------------HHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST------LTDKLYGESPK-LAT-------------------AIF 252 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~------l~~~~~g~~~~-~i~-------------------~lf 252 (341)
...++||+||||||||++|+++|..+|.+++.+++.. +...+.+.... ... ..+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3567999999999999999999999999999987754 22222221111 111 111
Q ss_pred HHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC----C---C-----CCCCEEEEEEeCCCC-----
Q psy15087 253 SLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT----T---D-----KNIDIIIMGATNRPD----- 315 (341)
Q Consensus 253 ~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~----~---~-----~~~~viVIatTN~~~----- 315 (341)
..|.. .+.+|+|||++++.+ ..++.|+..++... . . .+.++.||+|+|...
T Consensus 100 ~~A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 22222 347999999999632 23445555554311 0 0 123578999999853
Q ss_pred CCcHHHHccCCceEEecCCCcC
Q psy15087 316 DIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 316 ~ld~al~rRf~~~i~i~lP~~e 337 (341)
.+++++++||. .+.++.|+.+
T Consensus 168 ~l~~aL~~R~~-~i~i~~P~~~ 188 (262)
T TIGR02640 168 ETQDALLDRLI-TIFMDYPDID 188 (262)
T ss_pred cccHHHHhhcE-EEECCCCCHH
Confidence 56899999984 5899999864
No 103
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=7.8e-13 Score=132.42 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=98.2
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE---------EEe
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF---------INL 231 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~---------i~i 231 (341)
+.+|+||+|++.+++.|...+.. -+.+..+|||||||+|||++|+++|+.+.+.- ...
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 67899999999999999888754 15567899999999999999999999885421 001
Q ss_pred echhhhhh-------hcCCc---hHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 232 DISTLTDK-------LYGES---PKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 232 ~~s~l~~~-------~~g~~---~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
+|..+... +.|.. ...++.+.... ......||+|||+|.+.. ...+.|+..++..
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~LLk~lEep 148 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSLLKTLEEP 148 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHHHHHhhcC
Confidence 11111100 01111 12233322222 224568999999999842 2245667766642
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+..+++|++||.+..+.+++++|+.. +.+..++.+
T Consensus 149 ----~~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~ 183 (451)
T PRK06305 149 ----PQHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEE 183 (451)
T ss_pred ----CCCceEEEEeCChHhcchHHHHhceE-EeCCCCCHH
Confidence 23567777778888999999999854 777777654
No 104
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.9e-13 Score=134.95 Aligned_cols=151 Identities=42% Similarity=0.726 Sum_probs=135.5
Q ss_pred hhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEE
Q psy15087 184 PMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCII 263 (341)
Q Consensus 184 pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II 263 (341)
++..+..+...+ ..++.+++++||||+|||++++++|.+ +..+..++.++...+++|+.+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 456777788777 689999999999999999999999999 776788999999999999999999999999999999999
Q ss_pred EEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 264 FIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 264 ~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++||+|.+.+.+.........++..+++..++++. ... +++++.+|++..+++++++ ||+..+.+..|+...|
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 99999999998877566677888999999999998 344 8999999999999999999 9999999999987644
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=4.6e-12 Score=134.11 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=105.7
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCC---CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh---
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLL---KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK--- 239 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~---~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~--- 239 (341)
.|+|++++++.+.+.+... +.|+. +|..++||+||||||||.+|+++|..++.+++.++++++.+.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4899999999998887642 12211 233458999999999999999999999999999999886542
Q ss_pred --hcCCchH-----HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC-------CCCCE
Q psy15087 240 --LYGESPK-----LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD-------KNIDI 305 (341)
Q Consensus 240 --~~g~~~~-----~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~-------~~~~v 305 (341)
.+|.... ....+....+..+.+||+|||+|++. ..+.+.|+..++...-. +-.++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 2222111 12234455566677999999999873 23466777777643211 11357
Q ss_pred EEEEEeCCCC-------------------------CCcHHHHccCCceEEecCCCcC
Q psy15087 306 IIMGATNRPD-------------------------DIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 306 iVIatTN~~~-------------------------~ld~al~rRf~~~i~i~lP~~e 337 (341)
++|+|||... .+.|.++.|++..+.|..-+.+
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e 652 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEE 652 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHH
Confidence 8999998632 2467888899987877766544
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.43 E-value=1.2e-12 Score=125.54 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=95.3
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CcEEEeech
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN-----VSFINLDIS 234 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~-----~~~i~i~~s 234 (341)
.+.+|++++|++.+++.|...+.. ....++||+||||||||++|+++++++. .+++.++++
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS--------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 367899999999999999887653 1223699999999999999999999884 346777776
Q ss_pred hhhhhh-------------cCC-------chHHHHHHHHHHHh-----cCCeEEEEcccchhhhcCCCCchHHHHHHHHH
Q psy15087 235 TLTDKL-------------YGE-------SPKLATAIFSLAEK-----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSI 289 (341)
Q Consensus 235 ~l~~~~-------------~g~-------~~~~i~~lf~~a~~-----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ 289 (341)
++.... .+. ....++.+...... ..+.+|+|||+|.+... ..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~~~ 144 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQQA 144 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HHHH
Confidence 653211 111 01122332222222 23469999999987321 1233
Q ss_pred HHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 290 FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 290 ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
|...++... ....+|.+++.+..+.+.+.+|+. .+.+..|+.++
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~ 188 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDE 188 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHH
Confidence 444444322 123455566666677788999974 57777777644
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=9.4e-13 Score=128.54 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=98.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS------ 234 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s------ 234 (341)
+.+|++++|++.+++.+...+... ..+.++|||||||+|||++|+++|+.++++.....+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 778999999999999998887651 5567899999999999999999999886532111100
Q ss_pred -hhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy15087 235 -TLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMG 309 (341)
Q Consensus 235 -~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIa 309 (341)
++ +.........++.++..+.. ..+.||+|||+|.+.. ...+.++..++.. ....++|.
T Consensus 80 ~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~----~~~~~~Il 143 (367)
T PRK14970 80 FEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP----PAHAIFIL 143 (367)
T ss_pred EEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC----CCceEEEE
Confidence 00 00011122345555554432 2347999999998742 1245566656542 23456666
Q ss_pred EeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 310 ATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 310 tTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+++.+..+.+++.+|+. .+.+..|+.++
T Consensus 144 ~~~~~~kl~~~l~sr~~-~v~~~~~~~~~ 171 (367)
T PRK14970 144 ATTEKHKIIPTILSRCQ-IFDFKRITIKD 171 (367)
T ss_pred EeCCcccCCHHHHhcce-eEecCCccHHH
Confidence 67777889999999985 47777776543
No 108
>KOG2028|consensus
Probab=99.42 E-value=6.1e-13 Score=126.25 Aligned_cols=134 Identities=26% Similarity=0.430 Sum_probs=89.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc---EEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS---FINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~---~i~i~~s~l~ 237 (341)
+.+++|.+|++++.-+ ...+...+. ...-.+++||||||||||+||+.|+.....+ |+.+++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ie----------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIE----------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHH----------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--
Confidence 5678888888876543 111111110 1334579999999999999999999988665 77776543
Q ss_pred hhhcCCchHHHHHHHHHHHhc-----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe-
Q psy15087 238 DKLYGESPKLATAIFSLAEKI-----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT- 311 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~-----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT- 311 (341)
...+.++.+|+.+++. ...|||||||+++...+ +..|+...+ .+.+.+|++|
T Consensus 201 -----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ-----------QD~fLP~VE------~G~I~lIGATT 258 (554)
T KOG2028|consen 201 -----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ-----------QDTFLPHVE------NGDITLIGATT 258 (554)
T ss_pred -----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh-----------hhcccceec------cCceEEEeccc
Confidence 2334568888777543 44799999999984332 334554433 2458888877
Q ss_pred -CCCCCCcHHHHccCCceE
Q psy15087 312 -NRPDDIDPAIARRMPKKY 329 (341)
Q Consensus 312 -N~~~~ld~al~rRf~~~i 329 (341)
|+.-.+..++++|+...+
T Consensus 259 ENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred CCCccchhHHHHhccceeE
Confidence 444578999999986543
No 109
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.42 E-value=7.4e-13 Score=111.30 Aligned_cols=112 Identities=26% Similarity=0.403 Sum_probs=72.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh--hcCCch------HHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK--LYGESP------KLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~--~~g~~~------~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
+|||+||||||||++|+.+|..++.+++.+.++..... ..|... ......+..+.. .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999887764331 111111 000011111111 5689999999985
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCCC---------CCC------CEEEEEEeCCCC----CCcHHHHccC
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDGLTTD---------KNI------DIIIMGATNRPD----DIDPAIARRM 325 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~~~~~---------~~~------~viVIatTN~~~----~ld~al~rRf 325 (341)
...++..|+..++.-... ... ++.+|+|+|... .+++++++||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 244555666666532111 011 389999999988 8999999998
No 110
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.42 E-value=7.1e-13 Score=135.28 Aligned_cols=151 Identities=26% Similarity=0.424 Sum_probs=92.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
+.+|++++|++..++.+...+.. ..+.++||+||||||||++|++++..+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 57899999999999998865422 345689999999999999999997642 368999
Q ss_pred eechhh-------hhhhcCCchH-HH--HHHH----------HHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHH
Q psy15087 231 LDISTL-------TDKLYGESPK-LA--TAIF----------SLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIF 290 (341)
Q Consensus 231 i~~s~l-------~~~~~g~~~~-~i--~~lf----------~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~l 290 (341)
++|... ....++.... .. ...| ........++|||||++.+... .++.|
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~~L 195 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMNKL 195 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHHHH
Confidence 988642 1111111000 00 0000 0112234589999999998532 23344
Q ss_pred HHHhcCCC------------------------CCCCCCEEEE-EEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 291 LSKWDGLT------------------------TDKNIDIIIM-GATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 291 l~~ld~~~------------------------~~~~~~viVI-atTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+..++... ...+..+.+| +|||.|+.+++++++|+.. +.++.++.+
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~-I~f~pL~~e 266 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFRPLLDE 266 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhe-eeCCCCCHH
Confidence 44332110 0011234444 5566799999999999854 666555443
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1e-12 Score=134.61 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=100.0
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE-------EE-ee
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF-------IN-LD 232 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------i~-i~ 232 (341)
+.+|++|+|++.+++.|...+.. -+.++.+||+||||+|||++|+++|+.+++.- -. .+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 77899999999999999998764 15567799999999999999999999986531 00 01
Q ss_pred chhhhhh-------hcCC---chHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC
Q psy15087 233 ISTLTDK-------LYGE---SPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 233 ~s~l~~~-------~~g~---~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~ 298 (341)
|..+... ..|. ....++.+...+. .....|++|||+|.+.. ...+.|+..++.
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLLK~LEe-- 145 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALLKTIEE-- 145 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHHHhhcc--
Confidence 1111000 0111 1223444443322 23557999999999832 235566766663
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 299 TDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++..+++|.+|+.+..+.+++++|+.. +.+..|+.++
T Consensus 146 --pp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~e 182 (563)
T PRK06647 146 --PPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEK 182 (563)
T ss_pred --CCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHH
Confidence 334577777777788899999999864 7777776543
No 112
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=7.7e-13 Score=128.03 Aligned_cols=144 Identities=23% Similarity=0.330 Sum_probs=100.1
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc------------
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------ 227 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------ 227 (341)
.+.+|++++|++.+++.|.+.+.. ...+..+||+||||+|||++|+++|+.+.+.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 367899999999999999987754 1456789999999999999999999987543
Q ss_pred ------------EEEeechhhhhhhcCCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHH
Q psy15087 228 ------------FINLDISTLTDKLYGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFL 291 (341)
Q Consensus 228 ------------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll 291 (341)
++.+++.. ......++.++..+... ...||+|||+|.+.. ...+.++
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence 12222110 11223455666655432 336999999998732 2245566
Q ss_pred HHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 292 SKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 292 ~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
..++.. +..+++|.+|+.++.+.+++++|+. .+.++.|+.++
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~ 180 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLED 180 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHH
Confidence 666542 2356777777888888899999985 57887776543
No 113
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.41 E-value=3.9e-13 Score=129.32 Aligned_cols=151 Identities=19% Similarity=0.322 Sum_probs=93.7
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-------CCc--EEEe
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-------NVS--FINL 231 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-------~~~--~i~i 231 (341)
+..|++|+|++.+++.|.-.+.. ....++||.||||||||++|+++|..+ +++ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 56799999999999988765432 123589999999999999999999988 332 1111
Q ss_pred ech-hh--------h---------------hhhcCCch--HHH---HHHHH--HHHhcCCeEEEEcccchhhhcCCCCch
Q psy15087 232 DIS-TL--------T---------------DKLYGESP--KLA---TAIFS--LAEKIQPCIIFIDEIDSLLRSRSSSDH 280 (341)
Q Consensus 232 ~~s-~l--------~---------------~~~~g~~~--~~i---~~lf~--~a~~~~p~II~IDEiD~l~~~~~~~~~ 280 (341)
.+. .+ . ...+|... ..+ ...|. .......++||+||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 100 00 0 00112100 000 00011 00112236999999999743
Q ss_pred HHHHHHHHHHHHHhcC---------CCCCCCCCEEEEEEeCCCC-CCcHHHHccCCceEEecCCCc
Q psy15087 281 EATAQLKSIFLSKWDG---------LTTDKNIDIIIMGATNRPD-DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 281 ~~~~~i~~~ll~~ld~---------~~~~~~~~viVIatTN~~~-~ld~al~rRf~~~i~i~lP~~ 336 (341)
..++.|+..|+. .......++++++|+|..+ .+.++++.||...+.++.|..
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCc
Confidence 334455555532 2222345789999999755 689999999999898887765
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.8e-12 Score=134.14 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=101.0
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE----eech--
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN----LDIS-- 234 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~----i~~s-- 234 (341)
+.+|++++|++.+++.|...+... +.+.++||+||+|+|||++|+++|+.+++.... -.|.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~-------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN-------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC-------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 678999999999999999887651 345689999999999999999999998763110 0000
Q ss_pred ----hhh----------hhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC
Q psy15087 235 ----TLT----------DKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG 296 (341)
Q Consensus 235 ----~l~----------~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~ 296 (341)
.+. ..........++.+...+.. ....|++|||+|.|.. ...+.|+..++.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~LEe 147 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKTLEE 147 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHHHhc
Confidence 000 00112233456666665543 2346999999999832 235667777763
Q ss_pred CCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 297 LTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 297 ~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
+...+++|++|+.++.+-+.|++|+.. +.+..++.
T Consensus 148 ----Pp~~tvfIL~t~~~~~llpTIrSRc~~-~~f~~l~~ 182 (620)
T PRK14948 148 ----PPPRVVFVLATTDPQRVLPTIISRCQR-FDFRRIPL 182 (620)
T ss_pred ----CCcCeEEEEEeCChhhhhHHHHhheeE-EEecCCCH
Confidence 234577777788888899999999854 77766544
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.8e-12 Score=130.82 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=97.7
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------EE-Ee
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS-------FI-NL 231 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-------~i-~i 231 (341)
.+.+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|..+++. +- ..
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 367899999999999999888754 1456678999999999999999999988641 10 01
Q ss_pred echhhhh-----hh-----cCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 232 DISTLTD-----KL-----YGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 232 ~~s~l~~-----~~-----~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
+|..+.. -+ .......++.+...+.. ..+.|++|||+|.+.. ...+.|+..++..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEep 146 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEEP 146 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhcC
Confidence 1111111 00 01112234555444433 2457999999998742 1245566666542
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+..+++|.+|+.++.+.+++.+|+. .+.+..|+.++
T Consensus 147 ----p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~e 182 (486)
T PRK14953 147 ----PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQ 182 (486)
T ss_pred ----CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHH
Confidence 2345566666777888889999985 47777776543
No 116
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.38 E-value=1.2e-12 Score=137.28 Aligned_cols=139 Identities=24% Similarity=0.344 Sum_probs=92.7
Q ss_pred CcccccccCcHHHHH---HHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKK---ELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~---~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.+|++++|++.+.. .|...+.. ....+++||||||||||++|+++|+.++.+|+.+++....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~ 89 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG 89 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh
Confidence 578999999999885 45554432 2345799999999999999999999999999888875321
Q ss_pred hhhcCCchHHHHHHHHHH-----HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 238 DKLYGESPKLATAIFSLA-----EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a-----~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
. +.++..+..+ ......+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 90 i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE~------g~IiLI~aTT 145 (725)
T PRK13341 90 V-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVEN------GTITLIGATT 145 (725)
T ss_pred h-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhcC------ceEEEEEecC
Confidence 1 1122222222 1124579999999998422 13344444432 3477777664
Q ss_pred C--CCCCcHHHHccCCceEEecCCCcCC
Q psy15087 313 R--PDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 313 ~--~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
. ...+++++++|+. .+.++.++.++
T Consensus 146 enp~~~l~~aL~SR~~-v~~l~pLs~ed 172 (725)
T PRK13341 146 ENPYFEVNKALVSRSR-LFRLKSLSDED 172 (725)
T ss_pred CChHhhhhhHhhcccc-ceecCCCCHHH
Confidence 3 3468899999964 47777776543
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=2.8e-12 Score=132.10 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=100.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee--------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD-------- 232 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~-------- 232 (341)
+.+|++|+|++.+++.|...+.. -+.+.++||+||+|+|||++|+++|+.+++.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 67899999999999999998765 256788999999999999999999999876432111
Q ss_pred -----chhhhhhh-------c---CCchHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 233 -----ISTLTDKL-------Y---GESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 233 -----~s~l~~~~-------~---g~~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
|..+.... . ......++.+...+... ...|++|||+|.+.. ...+.|+..
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLLKt 155 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALLKT 155 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHHHH
Confidence 11111100 0 01123455565555432 357999999999832 224566666
Q ss_pred hcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 294 WDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 294 ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
|+.. ...+++|.+|+.++.+.+.+++|+. .+.+..|+.+
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~ 194 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEAD 194 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHH
Confidence 6542 3356666677777778889999985 5888777654
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.37 E-value=6.3e-12 Score=124.21 Aligned_cols=143 Identities=20% Similarity=0.232 Sum_probs=87.2
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------EEEeechhh
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS-------FINLDISTL 236 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-------~i~i~~s~l 236 (341)
++++.+.+...+.+...+ ....+++|+||||||||++|+.+|..+... ++.++.+--
T Consensus 174 l~d~~i~e~~le~l~~~L----------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRL----------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHH----------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 556666666666664443 235689999999999999999999987431 222322211
Q ss_pred hhhhcCC------c----hHHHHHHHHHHHhc--CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC-------
Q psy15087 237 TDKLYGE------S----PKLATAIFSLAEKI--QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL------- 297 (341)
Q Consensus 237 ~~~~~g~------~----~~~i~~lf~~a~~~--~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~------- 297 (341)
...+++. . ...+..+...|... .|++|||||+++... .++...++..++.-
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccc
Confidence 1122111 1 11223334455443 579999999998632 22333334433310
Q ss_pred -----------CCCCCCCEEEEEEeCCCC----CCcHHHHccCCceEEecC
Q psy15087 298 -----------TTDKNIDIIIMGATNRPD----DIDPAIARRMPKKYHIKL 333 (341)
Q Consensus 298 -----------~~~~~~~viVIatTN~~~----~ld~al~rRf~~~i~i~l 333 (341)
.-..+.++.||||+|..+ .+|.|++|||.. +.+..
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 011235799999999987 799999999976 55553
No 119
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.6e-12 Score=128.34 Aligned_cols=147 Identities=21% Similarity=0.220 Sum_probs=93.7
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE----------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN---------- 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~---------- 230 (341)
+.+|++|+|++.+++.|...+.. .+.+.++||+||||+|||++|+++|+.+.+.-..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 67899999999999999887764 2567789999999999999999999999763100
Q ss_pred eech------hhhh-------hhcCC---chHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHH
Q psy15087 231 LDIS------TLTD-------KLYGE---SPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIF 290 (341)
Q Consensus 231 i~~s------~l~~-------~~~g~---~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~l 290 (341)
-.|. .+.. .+.+. ....++.+...+.. ....|++|||+|.+... ..+.|
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-----------~~~~L 147 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-----------AFNAF 147 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------HHHHH
Confidence 0010 0000 01111 12334444443321 23469999999998421 23455
Q ss_pred HHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 291 LSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 291 l~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
+..++.. +...++|.+|+.+..+-+++.+|+. .+.+..++.
T Consensus 148 Lk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~ 188 (397)
T PRK14955 148 LKTLEEP----PPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPL 188 (397)
T ss_pred HHHHhcC----CCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCH
Confidence 6655532 2345555566667788889998875 366665543
No 120
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.37 E-value=2.1e-12 Score=129.50 Aligned_cols=156 Identities=17% Similarity=0.287 Sum_probs=94.9
Q ss_pred cCccccc-ccCcHH--HHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEe
Q psy15087 160 INGSWKN-IAGLEH--IKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINL 231 (341)
Q Consensus 160 ~~~~~~d-I~G~~~--~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i 231 (341)
+.-+|++ ++|... +...+......+ + ....+++||||||||||+|++++++++ +..++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G--KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C--ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4568888 445432 344444433221 1 234569999999999999999999987 5678889
Q ss_pred echhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 232 DISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 232 ~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT 311 (341)
++.++...+..........-|..... .+.+|+|||++.+.+... . ...|+..++.+.... ..+||++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~-----~----~~~l~~~~n~l~~~~--~~iiits~ 252 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER-----T----QEEFFHTFNALHEAG--KQIVLTSD 252 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH-----H----HHHHHHHHHHHHHCC--CcEEEECC
Confidence 98887665433221111112222222 568999999999854321 1 123333333332222 23555555
Q ss_pred CCCCC---CcHHHHccCCc--eEEecCCCcCCC
Q psy15087 312 NRPDD---IDPAIARRMPK--KYHIKLPLLSSF 339 (341)
Q Consensus 312 N~~~~---ld~al~rRf~~--~i~i~lP~~e~R 339 (341)
..|.. +++.+++||.. .+.+..|+.++|
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 55554 67899999964 678899998765
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.37 E-value=1.6e-11 Score=127.31 Aligned_cols=150 Identities=29% Similarity=0.465 Sum_probs=91.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
+.+|++++|++...+.+...+.. ..+.+++|+||||||||++|++++... +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 67899999999998887655432 235579999999999999999997655 357899
Q ss_pred eechhhh-------hhhcCCchHHH----HHHHH----------HHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHH
Q psy15087 231 LDISTLT-------DKLYGESPKLA----TAIFS----------LAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSI 289 (341)
Q Consensus 231 i~~s~l~-------~~~~g~~~~~i----~~lf~----------~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ 289 (341)
+++..+. ..+++...... +..+. .......++|||||++.|... .+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HHHH
Confidence 9887642 11222211100 00000 011224579999999987422 1233
Q ss_pred HHHHhcCC------------------------CCCCCCCEEEEEE-eCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 290 FLSKWDGL------------------------TTDKNIDIIIMGA-TNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 290 ll~~ld~~------------------------~~~~~~~viVIat-TN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
++..++.- .......+++|++ ++.++.+++++++||.. +.++..+.
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pls~ 355 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTP 355 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCCCH
Confidence 33333211 0111234666655 45678899999999864 56555543
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=1.8e-12 Score=128.21 Aligned_cols=128 Identities=18% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhhhhcCCchH-HHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKLYGESPK-LATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~~~~g~~~~-~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
...+++||||||+|||+|++++++++ +..++++++.++...+...... .........+ .+.+|+|||++.+.
T Consensus 135 ~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 135 AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLA 212 (405)
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhc
Confidence 34579999999999999999999887 5778889988776544322111 1112222222 35799999999985
Q ss_pred hcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC---CcHHHHccCCc--eEEecCCCcCCC
Q psy15087 273 RSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD---IDPAIARRMPK--KYHIKLPLLSSF 339 (341)
Q Consensus 273 ~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~---ld~al~rRf~~--~i~i~lP~~e~R 339 (341)
+.. .. ...|+..++..... ...+||+++..|.. +++.+.+||.. .+.++.|+.++|
T Consensus 213 ~~~------~~---~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 213 GKE------RT---QEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred CCH------HH---HHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 432 11 12233333332222 12355555555554 56889999974 678999998765
No 123
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.36 E-value=2.3e-12 Score=105.41 Aligned_cols=128 Identities=26% Similarity=0.373 Sum_probs=82.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc---EEEeechhhhhh--------------hcCCchHHHHHHHHHHHhcCCeE
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVS---FINLDISTLTDK--------------LYGESPKLATAIFSLAEKIQPCI 262 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~---~i~i~~s~l~~~--------------~~g~~~~~i~~lf~~a~~~~p~I 262 (341)
+..++|+||||||||++++.+|..+... ++.+++...... ............+..+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 777777654332 12334456678888888888899
Q ss_pred EEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC-CCCCcHHHHccCCceEEecCC
Q psy15087 263 IFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR-PDDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 263 I~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~-~~~ld~al~rRf~~~i~i~lP 334 (341)
|+|||++.+.............. ...... . .......+|+++|. ....+..+.+|++..+.+..|
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~-~~~~~~-~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE-LRLLLL-L-----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh-hHHHHH-H-----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999999854321100000000 000000 0 11235778888886 444566666688888877655
No 124
>PHA02244 ATPase-like protein
Probab=99.36 E-value=3.6e-12 Score=123.03 Aligned_cols=126 Identities=22% Similarity=0.226 Sum_probs=81.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhc---CCchHHHHHHHHHHHhcCCeEEEEcccchhhhc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY---GESPKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~---g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~ 274 (341)
....+|||+||||||||++|+++|..++.+|+.++...-..... .........-+..+. ...++|+|||++.+.+.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE 195 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH
Confidence 44567999999999999999999999999999987431111111 111111122233333 25689999999987432
Q ss_pred CCCCchHHHHHHHHHHHHHhcC-------CCCCCCCCEEEEEEeCCC-----------CCCcHHHHccCCceEEecCCCc
Q psy15087 275 RSSSDHEATAQLKSIFLSKWDG-------LTTDKNIDIIIMGATNRP-----------DDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 275 ~~~~~~~~~~~i~~~ll~~ld~-------~~~~~~~~viVIatTN~~-----------~~ld~al~rRf~~~i~i~lP~~ 336 (341)
++..|...++. -......++.+|+|+|.+ ..+++++++||. .++++.|+.
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH
Confidence 12222333321 111123468999999973 468999999996 488888873
No 125
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=2.3e-12 Score=122.90 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=87.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh--hcCCch----------HHHHHHHHHHHhcCCeEEEEc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK--LYGESP----------KLATAIFSLAEKIQPCIIFID 266 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~--~~g~~~----------~~i~~lf~~a~~~~p~II~ID 266 (341)
..+++||.||||||||++++.+|..++.+++.+++...... ..|... ......+..|.. .++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 35679999999999999999999999999999998766554 344321 112233444443 45889999
Q ss_pred ccchhhhcCCCCchHHHHHHHHHHHHH-----hcC--CCCCCCCCEEEEEEeCCCC------------CCcHHHHccCCc
Q psy15087 267 EIDSLLRSRSSSDHEATAQLKSIFLSK-----WDG--LTTDKNIDIIIMGATNRPD------------DIDPAIARRMPK 327 (341)
Q Consensus 267 EiD~l~~~~~~~~~~~~~~i~~~ll~~-----ld~--~~~~~~~~viVIatTN~~~------------~ld~al~rRf~~ 327 (341)
|+|...++ ....++.++.. +.+ ........+.||+|+|..+ .+++|.++||..
T Consensus 142 Ein~a~p~--------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 142 EYDAGRPD--------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhhccCHH--------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 99987332 11122233321 000 0111234688999999854 368999999988
Q ss_pred eEEecCCCcC
Q psy15087 328 KYHIKLPLLS 337 (341)
Q Consensus 328 ~i~i~lP~~e 337 (341)
.+.++.|+.+
T Consensus 214 ~~~~~Yp~~e 223 (327)
T TIGR01650 214 VTTLNYLEHD 223 (327)
T ss_pred EeeCCCCCHH
Confidence 7888888765
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=4.5e-12 Score=128.48 Aligned_cols=143 Identities=18% Similarity=0.217 Sum_probs=97.8
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc------------
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------ 227 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------ 227 (341)
.+.+|++|+|++.+++.|...+.. -+.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 367899999999999999998754 2556678999999999999999999987431
Q ss_pred ------------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHH
Q psy15087 228 ------------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFL 291 (341)
Q Consensus 228 ------------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll 291 (341)
++.++++. ......++.+...... ....|++|||+|.+.. ...+.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 12221110 0012334444433221 2236999999999832 2345667
Q ss_pred HHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 292 SKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 292 ~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
..++.. +..+.+|.+|+.+..+.+++++|+. .+++..++.+
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ 179 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQN 179 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHH
Confidence 766643 3346667677778899999999964 5787777654
No 127
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.7e-12 Score=131.77 Aligned_cols=149 Identities=21% Similarity=0.337 Sum_probs=109.1
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCC---CCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhhhhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLL---KPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTLTDK 239 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~---~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l~~~ 239 (341)
.|+||+++...+.+++... +.|+. +|..++||.||+|+|||.||+++|..+. ..++.+++|+++++
T Consensus 492 rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4899999999999998762 33432 3445689999999999999999999995 78999999999875
Q ss_pred ------------hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-CCC----
Q psy15087 240 ------------LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-DKN---- 302 (341)
Q Consensus 240 ------------~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-~~~---- 302 (341)
|+|..+ -..+....++.++|||+||||++. ...+.+.|++.+|.-.- +..
T Consensus 564 HsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred HHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEE
Confidence 333332 134555666667799999999995 45578889998874332 222
Q ss_pred --CCEEEEEEeCCCC----------------------------CCcHHHHccCCceEEecCCC
Q psy15087 303 --IDIIIMGATNRPD----------------------------DIDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 303 --~~viVIatTN~~~----------------------------~ld~al~rRf~~~i~i~lP~ 335 (341)
.+.+||+|||--. ...|.+++|++..|.|..-+
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~ 693 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLS 693 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCC
Confidence 2588999998521 13467788888777665544
No 128
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.34 E-value=1.3e-11 Score=120.04 Aligned_cols=154 Identities=21% Similarity=0.324 Sum_probs=99.8
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---------CcEEEeechhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN---------VSFINLDISTL 236 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~---------~~~i~i~~s~l 236 (341)
+++|.++.++.|...+...+. + ..+.+++++||||||||+++++++..+. ..++.++|...
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~--------~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR--------G--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc--------C--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 689999999999888764321 1 3456799999999999999999987652 56788887543
Q ss_pred hh----------hhc--CC--------chHHHHHHHHHHH-hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhc
Q psy15087 237 TD----------KLY--GE--------SPKLATAIFSLAE-KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD 295 (341)
Q Consensus 237 ~~----------~~~--g~--------~~~~i~~lf~~a~-~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld 295 (341)
.+ ... |. .......++.... ...+.||+|||+|.+.+.. ..++..++...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 22 111 11 1223344444443 2356799999999996221 112333433211
Q ss_pred CCCCCCCCCEEEEEEeCCCC---CCcHHHHccCC-ceEEecCCCcCC
Q psy15087 296 GLTTDKNIDIIIMGATNRPD---DIDPAIARRMP-KKYHIKLPLLSS 338 (341)
Q Consensus 296 ~~~~~~~~~viVIatTN~~~---~ld~al~rRf~-~~i~i~lP~~e~ 338 (341)
. ......++.+|+++|.++ .+++.+.+||. ..+.++.++.++
T Consensus 158 ~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e 203 (365)
T TIGR02928 158 N-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEE 203 (365)
T ss_pred c-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHH
Confidence 1 111224688999999876 57888989885 557888777654
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=6.9e-12 Score=129.46 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=97.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE----------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN---------- 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~---------- 230 (341)
+.+|++|+|++.+++.|+.++.. -+.+.++||+||+|||||++|+.+|+.+++.--.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 67899999999999999887654 2567789999999999999999999999773100
Q ss_pred ee------chhhhh-------hhcCCc---hHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHH
Q psy15087 231 LD------ISTLTD-------KLYGES---PKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIF 290 (341)
Q Consensus 231 i~------~s~l~~-------~~~g~~---~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~l 290 (341)
-. |..+.. .+.+.. ...++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~naL 147 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFNAF 147 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHHHH
Confidence 00 000100 011111 233444443332 22346999999999842 124566
Q ss_pred HHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 291 LSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 291 l~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+..++.. ...+++|.+|+.+..+-+++++|+. .+.+..++.+
T Consensus 148 LK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ 189 (620)
T PRK14954 148 LKTLEEP----PPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLD 189 (620)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHhhce-EEecCCCCHH
Confidence 7666643 2345566566667888899999974 4777777643
No 130
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=5.3e-12 Score=121.64 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=94.5
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh--hcCCc
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK--LYGES 244 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~--~~g~~ 244 (341)
++|.++++..+...+ ....++||.||||||||++|+++|..++.+|+.+.|...... ..|..
T Consensus 26 ~~g~~~~~~~~l~a~----------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLAL----------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHH----------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 567666666655543 235679999999999999999999999999999998754332 22322
Q ss_pred hHHHH----HHHHHHHh--cCC--eEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC-------CC-CCCCCCEEEE
Q psy15087 245 PKLAT----AIFSLAEK--IQP--CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG-------LT-TDKNIDIIIM 308 (341)
Q Consensus 245 ~~~i~----~lf~~a~~--~~p--~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~-------~~-~~~~~~viVI 308 (341)
.-... ..|..... ... +|+++|||++.. ..+++.|+..|+. .. ..-+..++||
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 11111 00000000 000 499999999963 2344555555543 22 2223568899
Q ss_pred EEeCC-----CCCCcHHHHccCCceEEecCCCcC
Q psy15087 309 GATNR-----PDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 309 atTN~-----~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+|+|. ...+++++++||...++++.|+.+
T Consensus 159 aT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred EccCccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 99994 446899999999888999999543
No 131
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.34 E-value=4.8e-12 Score=122.26 Aligned_cols=149 Identities=21% Similarity=0.343 Sum_probs=95.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC-------CcEEE---
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN-------VSFIN--- 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~-------~~~i~--- 230 (341)
...|++|+|++++|..|...+..| ...||||.||+|||||++|++++..+. .||..
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p--------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP--------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC--------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 557999999999999998877663 235899999999999999999977662 23321
Q ss_pred ------------------------------eechhhhhhhcCCchHHHHHHHHHH---------HhcCCeEEEEcccchh
Q psy15087 231 ------------------------------LDISTLTDKLYGESPKLATAIFSLA---------EKIQPCIIFIDEIDSL 271 (341)
Q Consensus 231 ------------------------------i~~s~l~~~~~g~~~~~i~~lf~~a---------~~~~p~II~IDEiD~l 271 (341)
+......+..+|... +...+... .....++||+||++.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD--~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTID--IEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCccc--HHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 000000011111100 01111111 1223479999999998
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhc---------CCCCCCCCCEEEEEEeCCCC-CCcHHHHccCCceEEecCCCc
Q psy15087 272 LRSRSSSDHEATAQLKSIFLSKWD---------GLTTDKNIDIIIMGATNRPD-DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 272 ~~~~~~~~~~~~~~i~~~ll~~ld---------~~~~~~~~~viVIatTN~~~-~ld~al~rRf~~~i~i~lP~~ 336 (341)
.+. .+..|+..|+ |.......++++|+|.|..+ .+.++++.||...+.+..|+.
T Consensus 157 ~~~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~ 220 (350)
T CHL00081 157 DDH-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKD 220 (350)
T ss_pred CHH-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCC
Confidence 432 3344555443 22222345789999888765 689999999999999998874
No 132
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.33 E-value=3.4e-12 Score=111.83 Aligned_cols=114 Identities=25% Similarity=0.343 Sum_probs=78.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC----cEEEeechhhhhhhcCCchHHHHHHHH----HHHhcCCeEEEEcccch
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANV----SFINLDISTLTDKLYGESPKLATAIFS----LAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~----~~i~i~~s~l~~~~~g~~~~~i~~lf~----~a~~~~p~II~IDEiD~ 270 (341)
|..++||.||+|||||.+|+++|+.+.. +++.++++++..... ....+..+.. .......+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999996 999999998876111 1111122221 11112225999999999
Q ss_pred hhhcCCCCchHHHHHHHHHHHHHhcCCCCCC-------CCCEEEEEEeCCC
Q psy15087 271 LLRSRSSSDHEATAQLKSIFLSKWDGLTTDK-------NIDIIIMGATNRP 314 (341)
Q Consensus 271 l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~-------~~~viVIatTN~~ 314 (341)
+.+..+.........+++.|+..+++-.-.. -.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9876455555566678888999887432211 1369999999964
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.33 E-value=1.3e-11 Score=117.42 Aligned_cols=145 Identities=24% Similarity=0.262 Sum_probs=93.4
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----cEEEee
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-----SFINLD 232 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-----~~i~i~ 232 (341)
...+.+|++++|++++++.|...+.. ....+++|+||||||||++++++++++.. .++.++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~--------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE--------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 33467899999999999999887643 12235899999999999999999998732 344444
Q ss_pred chhhhhhhcCCchHHHHH-HHHHHHh-----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy15087 233 ISTLTDKLYGESPKLATA-IFSLAEK-----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDII 306 (341)
Q Consensus 233 ~s~l~~~~~g~~~~~i~~-lf~~a~~-----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~vi 306 (341)
++.-. ....+.. +...+.. ..+.+|+|||+|.+... ....|...++... ..+.
T Consensus 76 ~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~----~~~~ 134 (319)
T PRK00440 76 ASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYS----QNTR 134 (319)
T ss_pred ccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCC----CCCe
Confidence 33211 1111222 2222221 23469999999988421 1234455554332 2345
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+|.++|.+..+.+++.+|+.. +.++.|+.++
T Consensus 135 lIl~~~~~~~l~~~l~sr~~~-~~~~~l~~~e 165 (319)
T PRK00440 135 FILSCNYSSKIIDPIQSRCAV-FRFSPLKKEA 165 (319)
T ss_pred EEEEeCCccccchhHHHHhhe-eeeCCCCHHH
Confidence 666777777888889999864 7887776543
No 134
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1e-11 Score=118.73 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=96.6
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc--------EEEeech
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS--------FINLDIS 234 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~--------~i~i~~s 234 (341)
+|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 589999999999999888754 2567788999999999999999999987442 2222110
Q ss_pred hhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 235 TLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
.+. .-....++.+...+. .....|++||++|.+. ....+.|+..++. ++.++++|.+
T Consensus 69 --~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEe----pp~~t~~il~ 129 (313)
T PRK05564 69 --NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEE----PPKGVFIILL 129 (313)
T ss_pred --cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcC----CCCCeEEEEE
Confidence 000 011223444444322 2344699999999873 2235677777764 2345666666
Q ss_pred eCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 311 TNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 311 TN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
|+.++.+-+.+++|+. .+.+..|+.+
T Consensus 130 ~~~~~~ll~TI~SRc~-~~~~~~~~~~ 155 (313)
T PRK05564 130 CENLEQILDTIKSRCQ-IYKLNRLSKE 155 (313)
T ss_pred eCChHhCcHHHHhhce-eeeCCCcCHH
Confidence 6778899999999985 5788777654
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=1.2e-11 Score=132.40 Aligned_cols=127 Identities=20% Similarity=0.349 Sum_probs=86.6
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCC--CCCc-eEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLL--KPPK-GILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~--~~~~-gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
.|+|++.+++.+.+.+.... .|+. ..|. .+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 48999999999999886531 1211 2344 48999999999999999999998 457889998876543
Q ss_pred ------------hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-CCC-----
Q psy15087 240 ------------LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-TDK----- 301 (341)
Q Consensus 240 ------------~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-~~~----- 301 (341)
|+|..+. ..+....++++++||+||||+++. ..+.+.|+..++... .+.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~-----------~~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH-----------PDVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC-----------HHHHHHHHHHhhcceeecCCCcEE
Confidence 2222211 123345566778999999999863 234556666665332 111
Q ss_pred -CCCEEEEEEeCC
Q psy15087 302 -NIDIIIMGATNR 313 (341)
Q Consensus 302 -~~~viVIatTN~ 313 (341)
-.+.+||+|||.
T Consensus 706 d~~n~iiI~TSNl 718 (852)
T TIGR03345 706 DFKNTVILLTSNA 718 (852)
T ss_pred eccccEEEEeCCC
Confidence 135889999985
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=3.3e-11 Score=129.25 Aligned_cols=156 Identities=20% Similarity=0.318 Sum_probs=101.6
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCC---CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLL---KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~---~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
-...|+|++.+++.+...+.... .|+. +|...+||+||||||||++|+++|..+ +.+++.++++++
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~ 637 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF 637 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh
Confidence 34568999999999999886531 1111 223468999999999999999999887 457999998876
Q ss_pred hhh-----hcCCchHH-----HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-CCC----
Q psy15087 237 TDK-----LYGESPKL-----ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-TDK---- 301 (341)
Q Consensus 237 ~~~-----~~g~~~~~-----i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-~~~---- 301 (341)
... .+|..... -..+....+..+.+||+|||++++. ..+.+.|+..++... ...
T Consensus 638 ~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 638 MEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------PDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------HHHHHHHHHHHhhCceecCCceE
Confidence 542 12211110 1122333344455899999999863 234566666664321 111
Q ss_pred --CCCEEEEEEeCCCC-------------------------CCcHHHHccCCceEEecCCCcC
Q psy15087 302 --NIDIIIMGATNRPD-------------------------DIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 302 --~~~viVIatTN~~~-------------------------~ld~al~rRf~~~i~i~lP~~e 337 (341)
-.+.+||+|||... .+.|++++|++..+.+..++.+
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~e 769 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQ 769 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHH
Confidence 12467899999731 2447888999887777776654
No 137
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.31 E-value=2.6e-12 Score=112.27 Aligned_cols=134 Identities=21% Similarity=0.394 Sum_probs=82.6
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh----
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK---- 239 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~---- 239 (341)
|+|.+...+.+.+.+... ...+.+|||+|++||||+.+|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA------------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHH------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 467777777777766543 2456789999999999999999998876 579999999876543
Q ss_pred -hcCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCCCCC
Q psy15087 240 -LYGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDKNID 304 (341)
Q Consensus 240 -~~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~~~~ 304 (341)
.+|... ..-..++..|.. ++||||||+.|.. .++..|+..++.-. .....+
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhhHH-----------HHHHHHHHHHhhchhcccccccccccc
Confidence 233211 112356666655 9999999999843 34555555554211 111236
Q ss_pred EEEEEEeCCCCCCcHHHHc-cCCce
Q psy15087 305 IIIMGATNRPDDIDPAIAR-RMPKK 328 (341)
Q Consensus 305 viVIatTN~~~~ld~al~r-Rf~~~ 328 (341)
+.||++|+.+ +.+.+.. +|...
T Consensus 135 ~RiI~st~~~--l~~~v~~g~fr~d 157 (168)
T PF00158_consen 135 VRIIASTSKD--LEELVEQGRFRED 157 (168)
T ss_dssp EEEEEEESS---HHHHHHTTSS-HH
T ss_pred ceEEeecCcC--HHHHHHcCCChHH
Confidence 9999999973 4444444 44433
No 138
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=9.9e-12 Score=128.39 Aligned_cols=147 Identities=19% Similarity=0.241 Sum_probs=94.8
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe---------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINL--------- 231 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i--------- 231 (341)
+.+|++|+|++.+++.|...+.. -+.+..+||+||||+|||++|+++|+.+++.....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 67899999999999999888764 14466789999999999999999999986532100
Q ss_pred echhhhhh----h------cCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 232 DISTLTDK----L------YGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 232 ~~s~l~~~----~------~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
.|..+... + .......++.+...+.. ....||+|||+|.+.. ...+.|+..++..
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~LEep 147 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKTLEEP 147 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHHHhcC
Confidence 00111000 0 00112233444333322 2347999999998842 2245566666543
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
...+++|.+++..+.+.+.+++|+.. +.|..++.
T Consensus 148 ----p~~tv~Il~t~~~~kll~tI~SR~~~-i~f~~l~~ 181 (585)
T PRK14950 148 ----PPHAIFILATTEVHKVPATILSRCQR-FDFHRHSV 181 (585)
T ss_pred ----CCCeEEEEEeCChhhhhHHHHhccce-eeCCCCCH
Confidence 23466666677777788899998754 77766554
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.30 E-value=3.3e-11 Score=109.24 Aligned_cols=143 Identities=16% Similarity=0.241 Sum_probs=85.9
Q ss_pred Cccccccc--CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh
Q psy15087 161 NGSWKNIA--GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST 235 (341)
Q Consensus 161 ~~~~~dI~--G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~ 235 (341)
+.+|++.+ +...+.+.++..+.. ..+.+++|+||||||||++|++++.++ +.+++.++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 45666654 466677777776431 456789999999999999999999876 56888899888
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
+.... ..++.... ...+|+|||+|.+.... ..... +..++..+. .. ...+|++++..+.
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----~~~~~-L~~~l~~~~---~~--~~~iIits~~~~~ 135 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----EWQEA-LFHLYNRVR---EA--GGRLLIAGRAAPA 135 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----HHHHH-HHHHHHHHH---Hc--CCeEEEECCCChH
Confidence 76432 12222222 34699999999984321 01111 222222221 11 1234443333443
Q ss_pred CC---cHHHHccCC--ceEEecCCCcCC
Q psy15087 316 DI---DPAIARRMP--KKYHIKLPLLSS 338 (341)
Q Consensus 316 ~l---d~al~rRf~--~~i~i~lP~~e~ 338 (341)
.+ ++.+.+|+. ..+.++.|+.++
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 33 278888875 456666666543
No 140
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.30 E-value=1.7e-11 Score=111.65 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=83.8
Q ss_pred CcCccccccc--CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 159 EINGSWKNIA--GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 159 ~~~~~~~dI~--G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
..+.+|++.. +...+...+...... .....+++|+||||||||+||+++++++ +.+++.+++
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3457788855 345555555554331 2445689999999999999999999875 668888887
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
..+.... .......+|+|||+|.+... . ...+...++.... ....+++.+++.
T Consensus 79 ~~~~~~~--------------~~~~~~~~liiDdi~~l~~~--------~---~~~L~~~~~~~~~--~~~~~vl~~~~~ 131 (227)
T PRK08903 79 ASPLLAF--------------DFDPEAELYAVDDVERLDDA--------Q---QIALFNLFNRVRA--HGQGALLVAGPA 131 (227)
T ss_pred HHhHHHH--------------hhcccCCEEEEeChhhcCch--------H---HHHHHHHHHHHHH--cCCcEEEEeCCC
Confidence 7654321 11224579999999987321 1 1222223322221 122334444443
Q ss_pred -CC--CCcHHHHccCC--ceEEecCCCcC
Q psy15087 314 -PD--DIDPAIARRMP--KKYHIKLPLLS 337 (341)
Q Consensus 314 -~~--~ld~al~rRf~--~~i~i~lP~~e 337 (341)
+. .+.+.+.+||. ..+.++.|+.+
T Consensus 132 ~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 132 APLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred CHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 32 35688888884 45666666643
No 141
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=4.5e-12 Score=126.12 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=104.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~ 237 (341)
+-+|++|+|.+.....+.+.+... ...+.+||+.|.+||||..+|++|.+.+ +.||+.+||..+.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 568999999998888887766542 3667889999999999999999998877 6799999998765
Q ss_pred hh-----hcCCchH----H----HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC-------C
Q psy15087 238 DK-----LYGESPK----L----ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG-------L 297 (341)
Q Consensus 238 ~~-----~~g~~~~----~----i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~-------~ 297 (341)
.. .+|.... . -...|+.|.. +.||+|||..+. ..++..||..+.. -
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC-----------HHHHHHHHHHHhhceEEecCC
Confidence 43 2222111 1 2345555544 899999998873 2344555555532 1
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHc-cCCc-------eEEecCCCcCCCC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIAR-RMPK-------KYHIKLPLLSSFS 340 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~r-Rf~~-------~i~i~lP~~e~R~ 340 (341)
...-+..|.||+|||+. +.+++.. +|+. ++.+.+|...+|.
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRLNV~~i~iPPLReR~ 423 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMIAEGTFREDLYYRLNVIPITIPPLRERK 423 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHHhcCcchhhheeeeceeeecCCCcccCc
Confidence 11123459999999983 4444443 3332 2568889988884
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.29 E-value=3.8e-12 Score=127.81 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=102.2
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE-------EEe-
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF-------INL- 231 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------i~i- 231 (341)
.+..|+|++|++.+.+.|..++.. -+...+.||.||.|||||++||.+|..+++.- ..+
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 367899999999999999999876 26678899999999999999999999997642 110
Q ss_pred echhhhhh----------hcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 232 DISTLTDK----------LYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 232 ~~s~l~~~----------~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
.|-.+... -...+...++.+.+.+. ...+.|.+|||+|.|. ....+.||..++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLE-- 144 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLE-- 144 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhcccc--
Confidence 11111111 01222334555555443 3355799999999983 334566666554
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEec
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIK 332 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~ 332 (341)
.++.+|.+|.+|..++.+++.+++|+.+ +.+.
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlSRcq~-f~fk 176 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILSRCQR-FDFK 176 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhhcccc-cccc
Confidence 3456799999999999999999999765 5443
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=1e-11 Score=124.12 Aligned_cols=128 Identities=13% Similarity=0.245 Sum_probs=78.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhhhhcCCch-HHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKLYGESP-KLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~~~~g~~~-~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
..+++||||||||||+|++++++++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999986 457888888877665432111 11122 2222223678999999998854
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC---CcHHHHccCC--ceEEecCCCcCCC
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD---IDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~---ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
... ... .++..++.+... ...+|+++.+.|.. +++.+.+||. ..+.+..|+.+.|
T Consensus 209 ~~~-----~q~----elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 209 KTG-----VQT----ELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred cHH-----HHH----HHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 311 112 222222222221 23455555555654 4577888885 3457888987765
No 144
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=7.8e-11 Score=115.75 Aligned_cols=154 Identities=20% Similarity=0.336 Sum_probs=99.1
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhh-
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTD- 238 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~- 238 (341)
+.++|.++..++|...+...+. + ..+.+++++||||||||++++.+++++ +..++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4588999999999888754321 1 345679999999999999999999876 57788888764322
Q ss_pred ---------hhcC--------CchHHHHHHHHHHHh-cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC
Q psy15087 239 ---------KLYG--------ESPKLATAIFSLAEK-IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD 300 (341)
Q Consensus 239 ---------~~~g--------~~~~~i~~lf~~a~~-~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~ 300 (341)
...+ .....+..+...... ..+.||+|||+|.+..... ...+..++..++...
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC--
Confidence 1112 012233344443333 3457999999999962111 123445555444332
Q ss_pred CCCCEEEEEEeCCCC---CCcHHHHccCC-ceEEecCCCcCC
Q psy15087 301 KNIDIIIMGATNRPD---DIDPAIARRMP-KKYHIKLPLLSS 338 (341)
Q Consensus 301 ~~~~viVIatTN~~~---~ld~al~rRf~-~~i~i~lP~~e~ 338 (341)
..++.+|+++|..+ .+++.+.+||. ..+.++.++.++
T Consensus 171 -~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 171 -GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred -CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHH
Confidence 23688888888754 47788888875 446676666553
No 145
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=2.1e-11 Score=118.96 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=99.2
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE----------
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI---------- 229 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i---------- 229 (341)
.+.++++|+|++.+++.|...+.. -+.+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 467899999999999999988765 266778999999999999999999998743110
Q ss_pred -----Eeech---hhhh----h--hc----CC---------chHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCC
Q psy15087 230 -----NLDIS---TLTD----K--LY----GE---------SPKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSS 278 (341)
Q Consensus 230 -----~i~~s---~l~~----~--~~----g~---------~~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~ 278 (341)
.-.|+ .+.. . ++ .+ ....++.+...+ ....+.|++|||+|.+.
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 00000 0000 0 00 01 012233333322 23466899999999973
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 279 DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 279 ~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
....+.|+..++. ++.+.++|.+|+.++.+.+.+++|+.. +.++.|+.+
T Consensus 155 -----~~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc~~-i~l~~l~~~ 203 (365)
T PRK07471 155 -----ANAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRCRK-LRLRPLAPE 203 (365)
T ss_pred -----HHHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccceE-EECCCCCHH
Confidence 2335567776664 234567777888888999999999754 777777654
No 146
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.27 E-value=7.3e-11 Score=108.52 Aligned_cols=145 Identities=12% Similarity=0.186 Sum_probs=83.5
Q ss_pred Cccccccc-C-cHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechh
Q psy15087 161 NGSWKNIA-G-LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDIST 235 (341)
Q Consensus 161 ~~~~~dI~-G-~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~ 235 (341)
..+|++.+ | ...+...+...... ....+++||||||||||+|++++++++. ..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 55788854 4 45555555554322 2335799999999999999999998763 3455555444
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
.... ...+..... +..+|+|||++.+.+.. +....+...+...++ . +...+++++++.|.
T Consensus 84 ~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~-----~~~~~lf~l~n~~~e----~-g~~~li~ts~~~p~ 143 (235)
T PRK08084 84 RAWF--------VPEVLEGME--QLSLVCIDNIECIAGDE-----LWEMAIFDLYNRILE----S-GRTRLLITGDRPPR 143 (235)
T ss_pred Hhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCH-----HHHHHHHHHHHHHHH----c-CCCeEEEeCCCChH
Confidence 2211 111222221 13689999999985331 122222222222222 1 11134555555555
Q ss_pred C---CcHHHHccCC--ceEEecCCCcCCC
Q psy15087 316 D---IDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 316 ~---ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
. +.+.+++|+. ..+.+..|+.++|
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 5 5799999986 5577888876544
No 147
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=4.4e-11 Score=109.56 Aligned_cols=149 Identities=13% Similarity=0.218 Sum_probs=82.8
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST 235 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~ 235 (341)
..+.+|++.+|.++.. +...+.. .+.. .....++||||||||||+|+.++|+++ +.....++...
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~------~~~~----~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRK------NFID----LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCcccccccccCChHH--HHHHHHH------Hhhc----cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 3477899977655432 1111111 1111 123358999999999999999999886 33444444432
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
... ....++... .+..+|+|||++.+.+.. .... .++..++..... +..++|++++..|.
T Consensus 78 ~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~-----~~~~----~l~~l~n~~~~~-~~~illits~~~p~ 137 (229)
T PRK06893 78 SQY--------FSPAVLENL--EQQDLVCLDDLQAVIGNE-----EWEL----AIFDLFNRIKEQ-GKTLLLISADCSPH 137 (229)
T ss_pred hhh--------hhHHHHhhc--ccCCEEEEeChhhhcCCh-----HHHH----HHHHHHHHHHHc-CCcEEEEeCCCChH
Confidence 110 011222222 245799999999985432 1111 222323222221 22344555555566
Q ss_pred CCc---HHHHccCC--ceEEecCCCcCCC
Q psy15087 316 DID---PAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 316 ~ld---~al~rRf~--~~i~i~lP~~e~R 339 (341)
.++ +.+.+|+. ..+.++.|+.++|
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 554 89999765 5677888887654
No 148
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.27 E-value=1.4e-11 Score=128.44 Aligned_cols=144 Identities=22% Similarity=0.382 Sum_probs=96.3
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-------------------
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA------------------- 224 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l------------------- 224 (341)
|.+|+|++.++..|.-.+..+ ...+|||.||||||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 678999999998887665542 12479999999999999999999887
Q ss_pred ----------------CCcEEEeechhhhhhhcCCch--HHH--------HHHHHHHHhcCCeEEEEcccchhhhcCCCC
Q psy15087 225 ----------------NVSFINLDISTLTDKLYGESP--KLA--------TAIFSLAEKIQPCIIFIDEIDSLLRSRSSS 278 (341)
Q Consensus 225 ----------------~~~~i~i~~s~l~~~~~g~~~--~~i--------~~lf~~a~~~~p~II~IDEiD~l~~~~~~~ 278 (341)
..+|+.+.++......+|... ..+ ..++. ....+||||||++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l~~----- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLA---EAHRGILYIDEVNLLDD----- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCccee---ecCCCeEEeChhhhCCH-----
Confidence 246766665544444444321 101 11111 12337999999999843
Q ss_pred chHHHHHHHHHHHHHhcCC---------CCCCCCCEEEEEEeCCC-CCCcHHHHccCCceEEecCCC
Q psy15087 279 DHEATAQLKSIFLSKWDGL---------TTDKNIDIIIMGATNRP-DDIDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 279 ~~~~~~~i~~~ll~~ld~~---------~~~~~~~viVIatTN~~-~~ld~al~rRf~~~i~i~lP~ 335 (341)
..++.|+..|+.- ......++.+|+|+|.. ..+.+++++||...+.++.|.
T Consensus 141 ------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~ 201 (633)
T TIGR02442 141 ------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPR 201 (633)
T ss_pred ------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCC
Confidence 3355566655421 11223468999999964 368899999999777766554
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.27 E-value=4.2e-11 Score=128.25 Aligned_cols=129 Identities=26% Similarity=0.368 Sum_probs=87.7
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCC---CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGL---LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~---~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
.|+||+.+++.+..++.... .|+ .+|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK 581 (821)
T ss_pred cCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc
Confidence 48999999999998876421 111 1333458999999999999999999987 467889988876432
Q ss_pred -----hcCCchH-----HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-CC------CC
Q psy15087 240 -----LYGESPK-----LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-TD------KN 302 (341)
Q Consensus 240 -----~~g~~~~-----~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-~~------~~ 302 (341)
.+|.... ....+....+..+.+||+|||+|++. ..+.+.|+..++... .. .-
T Consensus 582 ~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~-----------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH-----------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC-----------HHHHHHHHHHhccCceecCCCcEEec
Confidence 1221111 11234555666667999999999963 335667777776421 11 11
Q ss_pred CCEEEEEEeCC
Q psy15087 303 IDIIIMGATNR 313 (341)
Q Consensus 303 ~~viVIatTN~ 313 (341)
.++++|+|||.
T Consensus 651 ~~~i~I~Tsn~ 661 (821)
T CHL00095 651 KNTLIIMTSNL 661 (821)
T ss_pred CceEEEEeCCc
Confidence 36889999985
No 150
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=4.3e-11 Score=116.19 Aligned_cols=150 Identities=17% Similarity=0.114 Sum_probs=98.8
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------EEEe-
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS-------FINL- 231 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-------~i~i- 231 (341)
.+..+++|+|++.+++.|..++.. -+.+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 467899999999999999998765 2567789999999999999999999988551 1100
Q ss_pred ---ech---hhhhh----h--c----CC------c---hHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCCchHH
Q psy15087 232 ---DIS---TLTDK----L--Y----GE------S---PKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSSDHEA 282 (341)
Q Consensus 232 ---~~s---~l~~~----~--~----g~------~---~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~~~~~ 282 (341)
.|. .+... + + .+ . ...++.+.... ......|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 111 01000 0 0 00 0 12233332222 223457999999999832
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 283 ~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
...+.|+..++.. +.+.++|..|+.++.+.+.+++|+ ..+.++.|+.++
T Consensus 156 --~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~ 204 (351)
T PRK09112 156 --NAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDE 204 (351)
T ss_pred --HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHH
Confidence 2245577777642 234566666777888899999998 468888887653
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.26 E-value=4.1e-11 Score=128.79 Aligned_cols=155 Identities=20% Similarity=0.324 Sum_probs=103.4
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCC---CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGL---LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT 237 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~---~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~ 237 (341)
...|+|++.+++.+...+.... .|+ .+|...+||+||||||||++|+++|..+ +.+++.++++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 3459999999999999887531 111 1344569999999999999999999987 5689999988764
Q ss_pred hh-----hcCCchHH-----HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-CCC-----
Q psy15087 238 DK-----LYGESPKL-----ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-TDK----- 301 (341)
Q Consensus 238 ~~-----~~g~~~~~-----i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-~~~----- 301 (341)
.. .+|..... ...+....+..+.+||+||||+++. ..+.+.|+..++... ...
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------PDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------HHHHHHHHHHHhcCceecCCCeEE
Confidence 42 12211110 1233444455666899999999863 334566677665321 111
Q ss_pred -CCCEEEEEEeCCCCC-------------------------CcHHHHccCCceEEecCCCcC
Q psy15087 302 -NIDIIIMGATNRPDD-------------------------IDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 302 -~~~viVIatTN~~~~-------------------------ld~al~rRf~~~i~i~lP~~e 337 (341)
-.+++||+|||.... +.|.|+.|++..+.+..++.+
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e 766 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGRE 766 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHH
Confidence 135789999997321 336777899887777777654
No 152
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=3.2e-11 Score=124.87 Aligned_cols=148 Identities=21% Similarity=0.261 Sum_probs=98.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe---------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINL--------- 231 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i--------- 231 (341)
+.+|++|+|++.+++.|...+.. -+.+..+|||||+|+|||++|+.+|..+.+.....
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 67899999999999999988764 25677799999999999999999999886421100
Q ss_pred echhhhhh-------hcCC---chHHHHHHHHHHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 232 DISTLTDK-------LYGE---SPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 232 ~~s~l~~~-------~~g~---~~~~i~~lf~~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
+|..+... +.+. ....++.+...+... ...|++|||+|.+.. ...+.|+..++..
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naLLK~LEep 148 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAFLKTLEEP 148 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHHHHHHhCC
Confidence 01111000 0011 123355555444332 346999999999832 2355677766643
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+..+++|.+|+.+..|-++|++|+.. +.+..++.+
T Consensus 149 ----p~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ 183 (614)
T PRK14971 149 ----PSYAIFILATTEKHKILPTILSRCQI-FDFNRIQVA 183 (614)
T ss_pred ----CCCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHH
Confidence 23466666777778899999999755 777766543
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.25 E-value=4.7e-11 Score=124.72 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=98.3
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeech
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDIS 234 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s 234 (341)
+.|.|.++..++|..++...+.. ..+...++++|+||||||++++.+..++ .+.+++++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 45899999999999888764321 1223345699999999999999998766 2567889885
Q ss_pred hhhhh----------hcCC-------chHHHHHHHHHHH--hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhc
Q psy15087 235 TLTDK----------LYGE-------SPKLATAIFSLAE--KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD 295 (341)
Q Consensus 235 ~l~~~----------~~g~-------~~~~i~~lf~~a~--~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld 295 (341)
.+... ..+. ....+..+|.... .....||+|||||.|.... ..++-.|+....
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~ 897 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT 897 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh
Confidence 43221 1111 2234556665542 2235699999999996431 122223332211
Q ss_pred CCCCCCCCCEEEEEEeCC---CCCCcHHHHccCCce-EEecCCCcCC
Q psy15087 296 GLTTDKNIDIIIMGATNR---PDDIDPAIARRMPKK-YHIKLPLLSS 338 (341)
Q Consensus 296 ~~~~~~~~~viVIatTN~---~~~ld~al~rRf~~~-i~i~lP~~e~ 338 (341)
....+++|||.+|. ++.+++.+++||... +.|++++.+|
T Consensus 898 ----~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 898 ----KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred ----ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHH
Confidence 12346999999986 556788999988753 6666666554
No 154
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.25 E-value=2.1e-11 Score=117.53 Aligned_cols=145 Identities=21% Similarity=0.378 Sum_probs=92.2
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-------CCcEE-------
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-------NVSFI------- 229 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-------~~~~i------- 229 (341)
|..|+|++++|..|.-.+..| ...+|+|.|+||+|||+++++++..+ ++++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 778999999999986665442 24579999999999999999999877 33222
Q ss_pred --Eeechh-------------------hh-----hhhcCCch--HH--------HHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 230 --NLDIST-------------------LT-----DKLYGESP--KL--------ATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 230 --~i~~s~-------------------l~-----~~~~g~~~--~~--------i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
..+|.. +. +...|... .. -..++. +...++||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~~ 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLED 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCCH
Confidence 001110 00 01122210 00 001111 22348999999999743
Q ss_pred cCCCCchHHHHHHHHHHHHHhcC---------CCCCCCCCEEEEEEeCCCC-CCcHHHHccCCceEEecCCCc
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDG---------LTTDKNIDIIIMGATNRPD-DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~---------~~~~~~~~viVIatTN~~~-~ld~al~rRf~~~i~i~lP~~ 336 (341)
..++.|+..|+. .......++++|+|+|..+ .+.++++.||...+.++.|+.
T Consensus 146 -----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~ 207 (337)
T TIGR02030 146 -----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRD 207 (337)
T ss_pred -----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCC
Confidence 234455555532 2222235689999998755 689999999999888888865
No 155
>PRK08727 hypothetical protein; Validated
Probab=99.24 E-value=1.2e-10 Score=106.92 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=83.1
Q ss_pred cCcccccc-cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh
Q psy15087 160 INGSWKNI-AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST 235 (341)
Q Consensus 160 ~~~~~~dI-~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~ 235 (341)
++.+|++. +|.+.....+..... + .....++|+||+|||||+|+.+++.++ +....+++..+
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~------------~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAA------------G--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHh------------c--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 45688885 455554443332211 1 223459999999999999999997765 55666666554
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
+... +...+... ....+|+|||++.+..... ... .+-.+++.+ ... ..-+|+++.+.|.
T Consensus 80 ~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~~-----~~~-~lf~l~n~~---~~~--~~~vI~ts~~~p~ 138 (233)
T PRK08727 80 AAGR--------LRDALEAL--EGRSLVALDGLESIAGQRE-----DEV-ALFDFHNRA---RAA--GITLLYTARQMPD 138 (233)
T ss_pred hhhh--------HHHHHHHH--hcCCEEEEeCcccccCChH-----HHH-HHHHHHHHH---HHc--CCeEEEECCCChh
Confidence 3321 22233322 2447999999998854321 111 122233322 111 1123444444565
Q ss_pred CC---cHHHHccC--CceEEecCCCcCCC
Q psy15087 316 DI---DPAIARRM--PKKYHIKLPLLSSF 339 (341)
Q Consensus 316 ~l---d~al~rRf--~~~i~i~lP~~e~R 339 (341)
.+ ++.+.+|| ...+.++.|+.++|
T Consensus 139 ~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 139 GLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred hhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 44 79999997 45567777776654
No 156
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.23 E-value=6.1e-11 Score=112.89 Aligned_cols=141 Identities=26% Similarity=0.343 Sum_probs=95.0
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC--------------------
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN-------------------- 225 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~-------------------- 225 (341)
++.|.+.+...+...+... + +.+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~--~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G--RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C--CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 4677777777777665531 1 3455699999999999999999999986
Q ss_pred ----CcEEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 226 ----VSFINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 226 ----~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
-.++.++.+...... -....++.+-..... .+..||+|||+|.+.. ...+.++..++.
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEe- 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEE- 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhcc-
Confidence 345555555432211 123334444433322 2457999999999843 334556665543
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
++.+..+|.+||.++.+-+.+++|+.. +.|..|+.
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~ 170 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRSRCQR-IRFKPPSR 170 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhhccee-eecCCchH
Confidence 445688999999999999999999754 77765543
No 157
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.22 E-value=5e-11 Score=114.81 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=102.9
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD 238 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~ 238 (341)
..+++++|.+...+.+.+.+... .....+|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 3 ~~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~ 70 (326)
T PRK11608 3 EYKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (326)
T ss_pred cccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH
Confidence 35678999999988888877653 2446679999999999999999998765 46999999987642
Q ss_pred h-----hcCCchH-------HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------C
Q psy15087 239 K-----LYGESPK-------LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------T 299 (341)
Q Consensus 239 ~-----~~g~~~~-------~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~ 299 (341)
. ++|.... .....+.. ...++|||||++.|... .+..|+..++... .
T Consensus 71 ~~~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 71 NLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCc
Confidence 2 2232110 01122333 34589999999998432 3445555553211 1
Q ss_pred CCCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 300 DKNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 300 ~~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
..+.++.||+||+.. ..+.+.+..||.. +.|.+|...+|.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~ 183 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQ 183 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhh
Confidence 112357889888763 3456778888865 789999998884
No 158
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=5.7e-11 Score=114.52 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=95.9
Q ss_pred ccccccC-cHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE--E------eec
Q psy15087 163 SWKNIAG-LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI--N------LDI 233 (341)
Q Consensus 163 ~~~dI~G-~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i--~------i~~ 233 (341)
.|+.|.| ++.+++.|...+.. -+.+..+||+||+|+||+++|+++|+.+.+.-. . -+|
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4778877 99999999888754 266778999999999999999999998743210 0 000
Q ss_pred hhhhhh------h---cCC--chHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC
Q psy15087 234 STLTDK------L---YGE--SPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 234 s~l~~~------~---~g~--~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~ 298 (341)
..+... + .|. ....++.+...+. .....|++|||+|.+. ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LEE-- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLEE-- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhcC--
Confidence 000000 0 011 1123444443332 2234699999999973 2235677777764
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 299 TDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
++.++++|.+|+.++.+-+++++|+.. +++..|+.+
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrSRc~~-i~~~~~~~~ 172 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILSRCQV-VEFRPLPPE 172 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHhhcee-eeCCCCCHH
Confidence 334577777888888999999999754 788777654
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=9.4e-11 Score=119.98 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=79.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcC
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSR 275 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~ 275 (341)
+.++|||++|||||+|++++++++ +..++++++.++...+...........|... -..+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999976 5678899998887665432211111223322 2246899999999985432
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC-CC---CCcHHHHccCCceE--EecCCCcCCC
Q psy15087 276 SSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR-PD---DIDPAIARRMPKKY--HIKLPLLSSF 339 (341)
Q Consensus 276 ~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~-~~---~ld~al~rRf~~~i--~i~lP~~e~R 339 (341)
... ..|+..++.+... + +- ||.|+|. |. .+++.|.+||...+ .+..|+.+.|
T Consensus 394 ------~tq---eeLF~l~N~l~e~-g-k~-IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 394 ------STQ---EEFFHTFNTLHNA-N-KQ-IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred ------HHH---HHHHHHHHHHHhc-C-CC-EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 111 2222333322221 1 22 3345655 33 47889999996555 7777887765
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=4.8e-11 Score=119.33 Aligned_cols=128 Identities=17% Similarity=0.282 Sum_probs=77.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS 276 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~ 276 (341)
.++++||||||+|||+|++++++++ +..++++++..+...+...........|.... ....+|+|||++.+.+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999876 67888888877655432111110111233222 3568999999999854321
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC---CCcHHHHccCC--ceEEecCCCcCCC
Q psy15087 277 SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD---DIDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 277 ~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~---~ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
.. ..+...++.+... ...+|+++++.|. .+++.+++||. ..+.+..|+.++|
T Consensus 220 -----~q----eelf~l~N~l~~~--~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 220 -----TQ----EEFFHTFNSLHTE--GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred -----hH----HHHHHHHHHHHHC--CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 11 1222222222111 2244454444454 46789999996 4566777776654
No 161
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.20 E-value=5.1e-11 Score=114.86 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=96.2
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh---
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL--- 240 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~--- 240 (341)
++|.+...+.+.+.+... .....+|||+|++||||+++|++|.... +.||+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHH
Confidence 467777777776666542 2446679999999999999999997765 4799999998764321
Q ss_pred --cCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCCCCC
Q psy15087 241 --YGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDKNID 304 (341)
Q Consensus 241 --~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~~~~ 304 (341)
+|... ......|..+ ..++||||||+.|.. .++..|+..++... .....+
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred HHhccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccc
Confidence 22110 0011223333 458999999999843 23445555553221 111245
Q ss_pred EEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 305 IIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 305 viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
+.+|++||.. ..+.+.+..|+.. +.|.+|...+|.
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~~-~~i~lPpLReR~ 176 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLAF-DVITLPPLRERQ 176 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhcc-hhcCCCchhhhh
Confidence 7899999863 2355677778865 789999998874
No 162
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.19 E-value=6e-11 Score=120.83 Aligned_cols=152 Identities=18% Similarity=0.342 Sum_probs=102.3
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH-----------cCCcEEE
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE-----------ANVSFIN 230 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~-----------l~~~~i~ 230 (341)
..|++++|.+...+.+.+.+... .....+|||+|++||||+++|++|... .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 46889999999999888887652 245668999999999999999999877 3679999
Q ss_pred eechhhhhh-----hcCCchH--------HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 231 LDISTLTDK-----LYGESPK--------LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 231 i~~s~l~~~-----~~g~~~~--------~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
++|..+... .+|.... .-..+|..+. .+.||||||+.|... ++..|+..++.-
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~ 349 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEK 349 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcC
Confidence 999876432 2232111 0113444443 489999999998432 344555555421
Q ss_pred C-------CCCCCCEEEEEEeCCCC-------CCcHHHHccCCceEEecCCCcCCCC
Q psy15087 298 T-------TDKNIDIIIMGATNRPD-------DIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 298 ~-------~~~~~~viVIatTN~~~-------~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
. ..-..++.+|++||..- .+.+.+..|+.. +.+.+|...+|.
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~ 405 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERV 405 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhch
Confidence 1 11123468999998741 123345556654 789999999884
No 163
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=1.1e-10 Score=106.29 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=87.0
Q ss_pred cCcccccc-cC--cHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEe
Q psy15087 160 INGSWKNI-AG--LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINL 231 (341)
Q Consensus 160 ~~~~~~dI-~G--~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i 231 (341)
++-+|++. +| .+.+..........+ + .....++||||+|+|||+|+++++++. +..++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 36688885 35 344444444443331 1 233469999999999999999998875 5678899
Q ss_pred echhhhhhhcCCchH-HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 232 DISTLTDKLYGESPK-LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 232 ~~s~l~~~~~g~~~~-~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
++.++...+...... .+..+.... ....+|+||+++.+.+.. .....+...++.+... .+-+|+++
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~~---------~~q~~lf~l~n~~~~~--~k~li~ts 137 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGKQ---------RTQEELFHLFNRLIES--GKQLILTS 137 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTHH---------HHHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred cHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCch---------HHHHHHHHHHHHHHhh--CCeEEEEe
Confidence 988877654322111 112222222 245799999999985321 1223333333333322 23455555
Q ss_pred eCCCCC---CcHHHHccCCc--eEEecCCCcCCC
Q psy15087 311 TNRPDD---IDPAIARRMPK--KYHIKLPLLSSF 339 (341)
Q Consensus 311 TN~~~~---ld~al~rRf~~--~i~i~lP~~e~R 339 (341)
...|.. +++.+.+||.. .+.+..|+.+.|
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 555654 56889998876 557777776554
No 164
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-10 Score=109.57 Aligned_cols=70 Identities=33% Similarity=0.446 Sum_probs=55.8
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
|+|++++|+.+.-++..-.++.++-..+.-.-.|+++|+.||.|+|||.+||.+|+..++||+.+.+..+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 8999999999988877655544433332223468999999999999999999999999999998876543
No 165
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.18 E-value=8.7e-11 Score=119.58 Aligned_cols=153 Identities=18% Similarity=0.309 Sum_probs=102.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~ 237 (341)
...|++++|.+...+.+.+.+... .....+|||.|++||||+++|++|.... +.||+.++|..+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY------------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 367899999999999888877552 2456789999999999999999998765 5799999998764
Q ss_pred hh-----hcCCchH--------HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC------
Q psy15087 238 DK-----LYGESPK--------LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT------ 298 (341)
Q Consensus 238 ~~-----~~g~~~~--------~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~------ 298 (341)
.. .+|.... .-..+|..+. .+.||||||+.|... ++..|+..++.-.
T Consensus 276 e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 276 ESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-----------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred hhHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-----------HHHHHHHHHhcCcEEecCC
Confidence 32 2232110 1123444443 489999999998432 3444555543211
Q ss_pred -CCCCCCEEEEEEeCCCC-------CCcHHHHccCCceEEecCCCcCCCC
Q psy15087 299 -TDKNIDIIIMGATNRPD-------DIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 299 -~~~~~~viVIatTN~~~-------~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
......+.+|++||..- .+.+.+..|+.. +.+.+|...+|.
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~ 390 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERP 390 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhch
Confidence 11122468899988741 233345556654 789999999884
No 166
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.18 E-value=2.3e-11 Score=100.71 Aligned_cols=107 Identities=27% Similarity=0.388 Sum_probs=58.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeech-hhh-hhhcCC-----chH----HHHHHHHHHHhcCCeEEEEcccch
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDIS-TLT-DKLYGE-----SPK----LATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s-~l~-~~~~g~-----~~~----~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
+|||+|+||+|||++|+++|..++..|..+.+. ++. ++..|. ... .-.-+| ..|+++|||++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999988764 222 111111 000 001111 15999999999
Q ss_pred hhhcCCCCchHHHHHHHHHHHHHhc-------CCCCCCCCCEEEEEEeCCCC-----CCcHHHHccCC
Q psy15087 271 LLRSRSSSDHEATAQLKSIFLSKWD-------GLTTDKNIDIIIMGATNRPD-----DIDPAIARRMP 326 (341)
Q Consensus 271 l~~~~~~~~~~~~~~i~~~ll~~ld-------~~~~~~~~~viVIatTN~~~-----~ld~al~rRf~ 326 (341)
..+ +.++.++..|. |....-...++||||.|+.+ .+++++++||-
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 643 34555555553 22222345689999999876 68899999984
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=9.9e-11 Score=112.10 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=96.3
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE----------EEee
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF----------INLD 232 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~----------i~i~ 232 (341)
.|++|+|++.+++.|...+.. -+.+.++||+||+|+||+++|.++|+.+.+.- ...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 588999999999999998865 25678999999999999999999999873321 0111
Q ss_pred chhhhh--h-h--cCC--------------------chHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHH
Q psy15087 233 ISTLTD--K-L--YGE--------------------SPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEAT 283 (341)
Q Consensus 233 ~s~l~~--~-~--~g~--------------------~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~ 283 (341)
.+++.- . + .|. ....++.+...+. .....|++||++|.+..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 111110 0 0 010 0113444443333 23457999999999832
Q ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 284 AQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 284 ~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
...+.|+..++.. + +.++|..|+.++.|-+.+++|+. .+.++.|+.+
T Consensus 139 -~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRcq-~i~f~~l~~~ 185 (314)
T PRK07399 139 -AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDE 185 (314)
T ss_pred -HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhce-EEecCCCCHH
Confidence 2356677777643 2 34566677788999999999974 4888777654
No 168
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.17 E-value=9.7e-11 Score=118.44 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=92.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--------------- 225 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--------------- 225 (341)
...|++|.|++.+++.+.-.+ ....+++|.||||||||+++++++..+.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 348999999999987765543 3456899999999999999999986431
Q ss_pred -------------CcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 226 -------------VSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 226 -------------~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
.||...+++......+|.....-...+..|. .++|||||++.+.. ..+..|+.
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~-----------~~~~~L~~ 317 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKR-----------SVLDALRE 317 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCH-----------HHHHHHHH
Confidence 2333333322222223322111122334443 38999999998732 23444555
Q ss_pred HhcCCC---------CCCCCCEEEEEEeCCC------C-----------------CCcHHHHccCCceEEecCCC
Q psy15087 293 KWDGLT---------TDKNIDIIIMGATNRP------D-----------------DIDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 293 ~ld~~~---------~~~~~~viVIatTN~~------~-----------------~ld~al~rRf~~~i~i~lP~ 335 (341)
.|+.-. .....++.+|+++|.- + .+..++++||+..+.++.++
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~ 392 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLP 392 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCC
Confidence 443211 1123468999999962 1 48889999999888877654
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.17 E-value=8.7e-11 Score=120.30 Aligned_cols=153 Identities=22% Similarity=0.345 Sum_probs=102.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~ 237 (341)
...+++++|.+...+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 467889999999999988877653 2456679999999999999999998875 5699999998764
Q ss_pred hhh-----cCCchHH-------HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC------
Q psy15087 238 DKL-----YGESPKL-------ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT------ 299 (341)
Q Consensus 238 ~~~-----~g~~~~~-------i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~------ 299 (341)
... +|..... ....+.. ...++||||||+.+... .+..|+..++.-..
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCC
Confidence 321 2221100 0011222 24589999999998432 34455555543210
Q ss_pred -CCCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 300 -DKNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 300 -~~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
....++.+|++|+.. ..+.+.+..|+.. +.|.+|...+|.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLreR~ 373 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINV-VPIFLPPLRERR 373 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcC-CeeeCCCccccc
Confidence 011247889988763 2345566667754 789999998884
No 170
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.16 E-value=1.7e-10 Score=102.15 Aligned_cols=120 Identities=15% Similarity=0.225 Sum_probs=79.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc------------------------EEEeechhhhhhhcCCchHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS------------------------FINLDISTLTDKLYGESPKLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------------------~i~i~~s~l~~~~~g~~~~~i~~lf~ 253 (341)
+.+..+||+||+|+|||++|+.++..+.+. +..+.... . .-....++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 456789999999999999999999987542 11111100 0 011234444455
Q ss_pred HHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceE
Q psy15087 254 LAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY 329 (341)
Q Consensus 254 ~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i 329 (341)
.+.. ....||+|||+|.+.. ...+.|+..++.. +...++|.+||.+..+.+++++|+. .+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~~-~~ 150 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRCQ-VL 150 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhcE-Ee
Confidence 4443 3457999999999842 2245677777652 2345666667777899999999985 58
Q ss_pred EecCCCcCC
Q psy15087 330 HIKLPLLSS 338 (341)
Q Consensus 330 ~i~lP~~e~ 338 (341)
.+..|+.++
T Consensus 151 ~~~~~~~~~ 159 (188)
T TIGR00678 151 PFPPLSEEA 159 (188)
T ss_pred eCCCCCHHH
Confidence 888887654
No 171
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.15 E-value=2e-10 Score=114.55 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=84.0
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeech-hhhhhhcCC
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDIS-TLTDKLYGE 243 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s-~l~~~~~g~ 243 (341)
|+|.+++++.+..++ ....+|||+||||||||++|++++..++. +|....+. ......+|.
T Consensus 22 i~gre~vI~lll~aa----------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHH----------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 789998888887664 33568999999999999999999997643 44443332 112233332
Q ss_pred c-hHHH--HHHHHHHHhc---CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCCCCCEEEEEE
Q psy15087 244 S-PKLA--TAIFSLAEKI---QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDKNIDIIIMGA 310 (341)
Q Consensus 244 ~-~~~i--~~lf~~a~~~---~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~~~~viVIat 310 (341)
. -... ..-|...... ...++|+|||.++. ...++.|+..|..-. ..-+. .++++|
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~-rfiv~A 153 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPM-RLLVTA 153 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCC-cEEEEE
Confidence 1 0000 1112211111 22499999998763 334666777663211 11112 344555
Q ss_pred eCCCC---CCcHHHHccCCceEEecCCCc
Q psy15087 311 TNRPD---DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 311 TN~~~---~ld~al~rRf~~~i~i~lP~~ 336 (341)
||... ...+++..||-.++.++.|+.
T Consensus 154 TN~LPE~g~~leAL~DRFliri~vp~l~~ 182 (498)
T PRK13531 154 SNELPEADSSLEALYDRMLIRLWLDKVQD 182 (498)
T ss_pred CCCCcccCCchHHhHhhEEEEEECCCCCc
Confidence 57522 233699999977788888763
No 172
>KOG0991|consensus
Probab=99.14 E-value=8.5e-11 Score=105.97 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=88.0
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----cEEEeec
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-----SFINLDI 233 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-----~~i~i~~ 233 (341)
..+..++||+|.++..+.|...... ....+++|.||||||||+-+.++|.++=. -+..+++
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~--------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE--------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc--------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 3467789999999999999877654 33457999999999999999999998722 2455555
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHh-cCC---eEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEK-IQP---CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMG 309 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~-~~p---~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIa 309 (341)
++-.+ +. ....--+.|.+-+- .+| .||++||+|++. .+.+++.++.... . +....+..
T Consensus 87 SdeRG--ID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT----~gAQQAlRRtMEi-------y----S~ttRFal 148 (333)
T KOG0991|consen 87 SDERG--ID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT----AGAQQALRRTMEI-------Y----SNTTRFAL 148 (333)
T ss_pred ccccc--cH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhh----hHHHHHHHHHHHH-------H----cccchhhh
Confidence 54211 00 01111223333222 233 599999999984 2333344443322 1 12356788
Q ss_pred EeCCCCCCcHHHHccCCc
Q psy15087 310 ATNRPDDIDPAIARRMPK 327 (341)
Q Consensus 310 tTN~~~~ld~al~rRf~~ 327 (341)
++|..+.|-+.+.+|+..
T Consensus 149 aCN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQSRCAI 166 (333)
T ss_pred hhcchhhhhhhHHhhhHh
Confidence 899988888888886543
No 173
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.14 E-value=2.5e-10 Score=116.54 Aligned_cols=154 Identities=18% Similarity=0.329 Sum_probs=103.0
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
...+|++++|.+...+.+.+.+... ......|||+|++||||+++|+++...+ +.||+.++|+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 3678999999998877777665432 1345569999999999999999997665 469999999876
Q ss_pred hhh-----hcCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC--C---
Q psy15087 237 TDK-----LYGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT--T--- 299 (341)
Q Consensus 237 ~~~-----~~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~--~--- 299 (341)
... .+|... ..-..+|..+ ..++||||||+.+... ++..|+..+..-. .
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCC
Confidence 542 123211 0012234433 3489999999998432 3344444443211 0
Q ss_pred --CCCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 300 --DKNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 300 --~~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
....++.||+||+.+ ..+.+.+..|+.. +.+.+|...+|.
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~ 381 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRP 381 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccCh
Confidence 112357889888764 1355667778766 899999999985
No 174
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.14 E-value=9.7e-10 Score=99.56 Aligned_cols=152 Identities=17% Similarity=0.271 Sum_probs=107.2
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
|....+.+++|+|.+.+++.|.+-...... | .|..+|||||..|||||+|+||+-++. +..++.|+.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G--LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C--CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 344568899999999999998765544321 2 677899999999999999999998877 567888887
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhc-CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKI-QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~-~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
.++.. +-.++...+.. ..-|||+|++.-= . .+.-...|-..|+|-....+.+|+|.+|+|
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe-----~-----gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSFE-----E-----GDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCCC-----C-----CchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 77643 23444444433 3479999997431 1 112234566678887777778999999999
Q ss_pred CCCCCcH----------------------HHHccCCceEEecCCCcC
Q psy15087 313 RPDDIDP----------------------AIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 313 ~~~~ld~----------------------al~rRf~~~i~i~lP~~e 337 (341)
+...|.+ ++..||..-+-|..++.+
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~ 229 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQD 229 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHH
Confidence 9776553 233477766666666654
No 175
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-11 Score=119.44 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=89.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--------------- 225 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--------------- 225 (341)
...|.||.|++.+|+.|..+. ...+|+||+||||||||++|+.+..-+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA----------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s 238 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA----------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHS 238 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH----------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhh
Confidence 348999999999999997764 3467999999999999999999866441
Q ss_pred --------------CcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHH
Q psy15087 226 --------------VSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFL 291 (341)
Q Consensus 226 --------------~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll 291 (341)
.||..-..+.-....+|.....--.-...|. .+|+||||+-.+ .+.+++.|.
T Consensus 239 ~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef-----------~~~iLe~LR 304 (490)
T COG0606 239 LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF-----------KRSILEALR 304 (490)
T ss_pred hcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh-----------hHHHHHHHh
Confidence 1111111111111112221110011112222 279999998665 334555555
Q ss_pred HHhcCCC---------CCCCCCEEEEEEeCCCC-----------------------CCcHHHHccCCceEEecCCCcCC
Q psy15087 292 SKWDGLT---------TDKNIDIIIMGATNRPD-----------------------DIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 292 ~~ld~~~---------~~~~~~viVIatTN~~~-----------------------~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.-|+.-. .....++.+++++|..- .|...+++|+|..+.++.++..+
T Consensus 305 ~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 305 EPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred CccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 4443211 11124577888888521 35678999999988888876433
No 176
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=5.6e-11 Score=117.13 Aligned_cols=155 Identities=24% Similarity=0.425 Sum_probs=104.8
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeech
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIS 234 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s 234 (341)
+++...+.+|+|.+.+...+.+.+... .....+|||.|.+||||..+|++|.+.+ +.||+.+||+
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCA 283 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCA 283 (550)
T ss_pred cchhcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecc
Confidence 344667889999999999998887763 3567789999999999999999998877 5799999998
Q ss_pred hhhhh-----hcCCchHHH-------HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhc-----CC
Q psy15087 235 TLTDK-----LYGESPKLA-------TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD-----GL 297 (341)
Q Consensus 235 ~l~~~-----~~g~~~~~i-------~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld-----~~ 297 (341)
.+... .+|.-.... ..-|+.|. .+.+|+|||..+... ++..|+..+. .+
T Consensus 284 AlPesLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~-----------lQaKLLRvLQegEieRv 349 (550)
T COG3604 284 ALPESLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA-----------LQAKLLRVLQEGEIERV 349 (550)
T ss_pred ccchHHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHH-----------HHHHHHHHHhhcceeec
Confidence 77553 233221111 22333433 389999999887422 2333444332 22
Q ss_pred CCCC--CCCEEEEEEeCCCCCCcHHHHc-cCCce-------EEecCCCcCCCC
Q psy15087 298 TTDK--NIDIIIMGATNRPDDIDPAIAR-RMPKK-------YHIKLPLLSSFS 340 (341)
Q Consensus 298 ~~~~--~~~viVIatTN~~~~ld~al~r-Rf~~~-------i~i~lP~~e~R~ 340 (341)
..+. .-.|.||+|||+ ++..+++. +|.-. +.+.+|...+|.
T Consensus 350 G~~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~ 400 (550)
T COG3604 350 GGDRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERP 400 (550)
T ss_pred CCCceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCC
Confidence 2211 234899999998 45555555 34322 567888888874
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.12 E-value=5.8e-10 Score=96.83 Aligned_cols=133 Identities=24% Similarity=0.279 Sum_probs=86.1
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE--------------------
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF-------------------- 228 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------------------- 228 (341)
|++.+++.|...+.. -+.|..+||+||+|+||+++|+++|..+-+.-
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 788889999888765 26678899999999999999999999873321
Q ss_pred ---EEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy15087 229 ---INLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK 301 (341)
Q Consensus 229 ---i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~ 301 (341)
+.++...... .-....++.+...+.. ....|++|||+|.+ .....+.|+..|+. +
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe----p 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE----P 129 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS----T
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC----C
Confidence 1111111000 0122344444443322 34579999999998 34456778887774 3
Q ss_pred CCCEEEEEEeCCCCCCcHHHHccCCceEEecC
Q psy15087 302 NIDIIIMGATNRPDDIDPAIARRMPKKYHIKL 333 (341)
Q Consensus 302 ~~~viVIatTN~~~~ld~al~rRf~~~i~i~l 333 (341)
+.++++|.+|+.++.|-+.+++|+.. +.++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred CCCEEEEEEECChHHChHHHHhhceE-EecCC
Confidence 45788999999999999999999743 55543
No 178
>PRK06620 hypothetical protein; Validated
Probab=99.12 E-value=5e-10 Score=101.63 Aligned_cols=135 Identities=13% Similarity=0.174 Sum_probs=78.0
Q ss_pred CCcCcccccc-cCc--HHHHHHHHHHhhchhhchhHHhhcCCCCC-CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 158 EEINGSWKNI-AGL--EHIKKELNQSVIFPMKNRNLLKESGLLKP-PKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 158 ~~~~~~~~dI-~G~--~~~k~~L~~~v~~pl~~~~~~~~~g~~~~-~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
..++-+|+++ +|- ..+...+...... ++ ..+ ...++||||||||||+|++++++..+..++. .
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~ 75 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FG-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--D 75 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHc----------cc-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--h
Confidence 3446678884 444 3344444443321 12 123 2679999999999999999999988754432 1
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
... . ...+ ....+++|||+|.+. ...+..+++.+ ... ++.++++++..
T Consensus 76 ~~~-----~------~~~~-----~~~d~lliDdi~~~~-----------~~~lf~l~N~~---~e~--g~~ilits~~~ 123 (214)
T PRK06620 76 IFF-----N------EEIL-----EKYNAFIIEDIENWQ-----------EPALLHIFNII---NEK--QKYLLLTSSDK 123 (214)
T ss_pred hhh-----c------hhHH-----hcCCEEEEeccccch-----------HHHHHHHHHHH---Hhc--CCEEEEEcCCC
Confidence 100 0 0111 133799999999541 11122222222 222 34667777666
Q ss_pred CCC--CcHHHHccCCce--EEecCCCcCC
Q psy15087 314 PDD--IDPAIARRMPKK--YHIKLPLLSS 338 (341)
Q Consensus 314 ~~~--ld~al~rRf~~~--i~i~lP~~e~ 338 (341)
|.. + +++++|+... +.+..|+.+.
T Consensus 124 p~~l~l-~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 124 SRNFTL-PDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred ccccch-HHHHHHHhCCceEeeCCCCHHH
Confidence 554 5 8899998743 6788887654
No 179
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.11 E-value=4.1e-10 Score=118.60 Aligned_cols=153 Identities=20% Similarity=0.343 Sum_probs=102.0
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~ 237 (341)
+..|++++|.+...+.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 457889999999999888777652 2445689999999999999999998765 5799999998764
Q ss_pred hh-----hcCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------
Q psy15087 238 DK-----LYGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT------- 298 (341)
Q Consensus 238 ~~-----~~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~------- 298 (341)
.. .+|... ......+.. ...++||||||+.+... ++..|+..++...
T Consensus 440 ~~~~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 440 AGLLESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMPLE-----------LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhHhhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCCHH-----------HHHHHHHHHHhCCEEeCCCC
Confidence 32 223211 011123333 34589999999998432 3444555443211
Q ss_pred CCCCCCEEEEEEeCCCC-------CCcHHHHccCCceEEecCCCcCCCC
Q psy15087 299 TDKNIDIIIMGATNRPD-------DIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~-------~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
.....++.+|++|+..- .+.+.+..|+.. +.|.+|...+|.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~ 553 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERP 553 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhH
Confidence 11123578999998741 233445556644 789999999884
No 180
>KOG0745|consensus
Probab=99.11 E-value=3.7e-10 Score=109.57 Aligned_cols=137 Identities=28% Similarity=0.433 Sum_probs=94.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-hhcCCc-hHHHHHHHHHH----HhcCCeEEEEcccchhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD-KLYGES-PKLATAIFSLA----EKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~-~~~g~~-~~~i~~lf~~a----~~~~p~II~IDEiD~l~~ 273 (341)
.++|||.||+|+|||+||+.+|..+++||...+|..+.. .|+|+. +..+..++..| .+.+.+||||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 568999999999999999999999999999999999987 477876 44566666654 455779999999999974
Q ss_pred cCCCC--c-hHHHHHHHHHHHHHhcCCCC---------CCCCCEEEEEEeC-------CCCCCcHHHHccCCce-EEecC
Q psy15087 274 SRSSS--D-HEATAQLKSIFLSKWDGLTT---------DKNIDIIIMGATN-------RPDDIDPAIARRMPKK-YHIKL 333 (341)
Q Consensus 274 ~~~~~--~-~~~~~~i~~~ll~~ld~~~~---------~~~~~viVIatTN-------~~~~ld~al~rRf~~~-i~i~l 333 (341)
...+. . .-..+-+++.||.+++|..- ..+...+.|-|+| .-..||..+.||.+.. +=+..
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~ 385 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGA 385 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCC
Confidence 33221 1 11234567888998886321 1122233333333 3346888888876542 34555
Q ss_pred CCc
Q psy15087 334 PLL 336 (341)
Q Consensus 334 P~~ 336 (341)
|+.
T Consensus 386 ~s~ 388 (564)
T KOG0745|consen 386 PSS 388 (564)
T ss_pred CCC
Confidence 543
No 181
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.11 E-value=6.1e-10 Score=113.45 Aligned_cols=151 Identities=21% Similarity=0.364 Sum_probs=103.2
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
.+.+++|.+...+.+.+.+... ...+.+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 5678999999999988887653 2456789999999999999999998875 579999999877432
Q ss_pred -----hcCCchHH-------HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CC
Q psy15087 240 -----LYGESPKL-------ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TD 300 (341)
Q Consensus 240 -----~~g~~~~~-------i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~ 300 (341)
.+|..... ....|..+ ..++|||||||.|... ++..|+..++... ..
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcc
Confidence 22321100 01123333 4589999999998432 3445555543211 01
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 301 KNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 301 ~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
....+.+|++||.. ..+.+.+..|+.. +.|.+|...+|.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~ 364 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERG 364 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhch
Confidence 12357899999874 2355666667755 789999999884
No 182
>PRK05642 DNA replication initiation factor; Validated
Probab=99.10 E-value=6.4e-10 Score=102.22 Aligned_cols=119 Identities=15% Similarity=0.266 Sum_probs=74.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS 276 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~ 276 (341)
..+++||||+|||||+|++++++++ +..+++++..++.... ..+..... ...+|+|||++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 4679999999999999999998764 5677888877765421 12222222 23689999999874332
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC---CcHHHHccCC--ceEEecCCCcCCC
Q psy15087 277 SSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD---IDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 277 ~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~---ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
... ..|...++..... .+.++++++..|.. ..+.+++||. ..+.+..|+.++|
T Consensus 114 ----~~~----~~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 114 ----DWE----EALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred ----HHH----HHHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 111 2233333332221 23566666655543 3689999985 4455677766543
No 183
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.09 E-value=3.5e-10 Score=112.34 Aligned_cols=152 Identities=20% Similarity=0.341 Sum_probs=105.1
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD 238 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~ 238 (341)
..+.+++|.+...+++.+.+... .....+||++|++||||..+|++|...+ +.||+.+||..+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 46778999999999999887653 3556789999999999999999998777 56999999987655
Q ss_pred h-----hcCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC-----CC--C
Q psy15087 239 K-----LYGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG-----LT--T 299 (341)
Q Consensus 239 ~-----~~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~-----~~--~ 299 (341)
. .+|... ..-...|+.|.. +.||||||..+.. .++..|+..+.. +. .
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCCCc
Confidence 3 233211 111234455444 8999999998742 234445554432 11 1
Q ss_pred CCCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 300 DKNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 300 ~~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
.-+..|.||+|||+. ..+-+.|.-|+.. +.+.+|...+|.
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV-~~i~iPpLRER~ 318 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNV-VPLRLPPLRERK 318 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhcc-ceecCCcccccc
Confidence 112358999999983 1233455557654 789999999884
No 184
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.09 E-value=6e-10 Score=116.45 Aligned_cols=153 Identities=17% Similarity=0.277 Sum_probs=100.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~ 237 (341)
..+|++++|.+...+++.+.+... .....+|||+|++||||+++|+++...+ +.||+.++|..+.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 446889999988888777766542 2445679999999999999999998876 4699999998764
Q ss_pred h-----hhcCCc----hHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC--C-----
Q psy15087 238 D-----KLYGES----PKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD--K----- 301 (341)
Q Consensus 238 ~-----~~~g~~----~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~--~----- 301 (341)
. ..+|.. ..-....|.. ...++||||||+.+... ++..|+..++.-... +
T Consensus 389 ~~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 389 DEALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred hHHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceE
Confidence 3 233321 0000112222 24589999999998432 344455554422110 0
Q ss_pred CCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 302 NIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 302 ~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
+.++.+|+||+.. ..+.+.+..|+.. +.|.+|...+|.
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~ 499 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRR 499 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhh
Confidence 1247899999873 2344455556644 789999999884
No 185
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=4.2e-10 Score=108.39 Aligned_cols=121 Identities=18% Similarity=0.265 Sum_probs=82.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc------------------------EEEeechhhhhhhcCCchHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS------------------------FINLDISTLTDKLYGESPKLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------------------~i~i~~s~l~~~~~g~~~~~i~~lf~ 253 (341)
+.+.++||+||+|+|||++|+++|+.+.+. ++.+....- . ..-+...++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 567789999999999999999999988542 111111000 0 0012234555544
Q ss_pred HHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceE
Q psy15087 254 LAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY 329 (341)
Q Consensus 254 ~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i 329 (341)
.+.. ....|++||++|.+. ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+.. +
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc~~-~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRCQQ-Q 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhcee-e
Confidence 4432 345799999999983 2335677777764 335688889999999999999999866 8
Q ss_pred EecCCCcC
Q psy15087 330 HIKLPLLS 337 (341)
Q Consensus 330 ~i~lP~~e 337 (341)
.++.|+.+
T Consensus 161 ~~~~~~~~ 168 (328)
T PRK05707 161 ACPLPSNE 168 (328)
T ss_pred eCCCcCHH
Confidence 88888654
No 186
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=1.2e-10 Score=113.82 Aligned_cols=153 Identities=22% Similarity=0.349 Sum_probs=103.1
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH----cCCcEEEeech
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE----ANVSFINLDIS 234 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~----l~~~~i~i~~s 234 (341)
.....+++++|.+...+++.+.+... .....+||+.|++||||+.+|++|... .+.||+.+||+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAY------------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhh------------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHH
Confidence 34667889999999888888877651 245568999999999999999999543 36799999999
Q ss_pred hhhhhh-----cCC-------chHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC-----
Q psy15087 235 TLTDKL-----YGE-------SPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL----- 297 (341)
Q Consensus 235 ~l~~~~-----~g~-------~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~----- 297 (341)
.+...- +|. ....-..+|..|.. ++||+|||..+... .+..++..++..
T Consensus 140 ~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRV 205 (403)
T ss_pred HhCcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEec
Confidence 876532 221 11222345555544 89999999998543 233445555431
Q ss_pred --CCCCCCCEEEEEEeCCCCCCcHHHH------ccCCceEEecCCCcCCCC
Q psy15087 298 --TTDKNIDIIIMGATNRPDDIDPAIA------RRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 298 --~~~~~~~viVIatTN~~~~ld~al~------rRf~~~i~i~lP~~e~R~ 340 (341)
.......|.+|+|||. +++.+++ +|. ....|.+|+..+|.
T Consensus 206 G~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~ 253 (403)
T COG1221 206 GGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRL-NILTITLPPLRERK 253 (403)
T ss_pred CCCCCcCCCceeeecccc--CHHHHHHhhcchhhhh-cCceecCCChhhch
Confidence 1122346889999985 3444444 333 23688999999984
No 187
>KOG1051|consensus
Probab=99.08 E-value=1.6e-09 Score=114.43 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=158.8
Q ss_pred cchhhHHHHHHHHHHHhcccCCCCcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhhhhhhhcc-cCC
Q psy15087 26 YSIYKFEGFITFLYKQYSITHTRMSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRTTNKLMAT-HQD 102 (341)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 102 (341)
+++..++.-++-.+.|.|.+..++.+.... ...+.+........+..+|.++.+. .-....+.|+....+|.+ ..+
T Consensus 62 l~~ralelc~~v~l~rlpt~~~p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~-~li~silDdp~vsrv~reag~~ 140 (898)
T KOG1051|consen 62 LQCRALELCFNVSLNRLPTSYGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELE-QLILSILDDPSVSRVMREAGFS 140 (898)
T ss_pred ccHHHHHHHHHHHHHhccCCCCCccchHhHHHHHHHHHHHHhcchhhccchhhHhHH-hhheeeecCchHHHHHHHhcCC
Confidence 899999999999999999999865554433 3333344444444455556666652 112233444455555555 333
Q ss_pred cccchhhccCCCCCchhhHHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCc-HHHHHHHHHHh
Q psy15087 103 TNHVQCYFSDPSGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGL-EHIKKELNQSV 181 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~-~~~k~~L~~~v 181 (341)
...++....+..|..+.....+ ......+.+.+.+ ++ |.......+-++|. ++-.+.+.+.+
T Consensus 141 s~~vK~~ve~~~g~~~~~~~~~-~~~~~~L~~~~~d----l~------------p~a~~gkldPvigr~deeirRvi~iL 203 (898)
T KOG1051|consen 141 SSAVKSAVEQPVGQFRSPSRGP-LWPLLFLENYGTD----LT------------PRARQGKLDPVIGRHDEEIRRVIEIL 203 (898)
T ss_pred hHHHHHHHHhhccccCCCCcCC-ccchhHHHhcccc----cC------------hhhhccCCCCccCCchHHHHHHHHHH
Confidence 3333333333322211111000 0011112221111 22 21113335667776 55555554544
Q ss_pred hchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhhh--hhcCCchHHHH
Q psy15087 182 IFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLTD--KLYGESPKLAT 249 (341)
Q Consensus 182 ~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~~--~~~g~~~~~i~ 249 (341)
.. +..++-+|+|.||+|||.++.-+|+.. +..++.++...+.. ++.|+.+..++
T Consensus 204 ~R--------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk 269 (898)
T KOG1051|consen 204 SR--------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLK 269 (898)
T ss_pred hc--------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHH
Confidence 33 334788999999999999999999876 34556666654433 56788889999
Q ss_pred HHHHHHHhc-CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCcHHHHc
Q psy15087 250 AIFSLAEKI-QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DIDPAIAR 323 (341)
Q Consensus 250 ~lf~~a~~~-~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld~al~r 323 (341)
.+...+... ..-||||||++-+.+.....+ .....+.|-..+. +..+.+||||.... .-||++.+
T Consensus 270 ~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~nlLkp~L~------rg~l~~IGatT~e~Y~k~iekdPalEr 340 (898)
T KOG1051|consen 270 ELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAANLLKPLLA------RGGLWCIGATTLETYRKCIEKDPALER 340 (898)
T ss_pred HHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHHhhHHHHh------cCCeEEEecccHHHHHHHHhhCcchhh
Confidence 999888744 446899999999987654422 2122222222221 23488999886321 45899999
Q ss_pred cCCceEEecCCCcCC
Q psy15087 324 RMPKKYHIKLPLLSS 338 (341)
Q Consensus 324 Rf~~~i~i~lP~~e~ 338 (341)
||+. +.++.|+.+.
T Consensus 341 rw~l-~~v~~pS~~~ 354 (898)
T KOG1051|consen 341 RWQL-VLVPIPSVEN 354 (898)
T ss_pred Ccce-eEeccCcccc
Confidence 9987 8899998764
No 188
>PRK12377 putative replication protein; Provisional
Probab=99.06 E-value=1.8e-09 Score=99.92 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=68.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCc--hHHHHHHHHHHHhcCCeEEEEcccchhhhc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGES--PKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~--~~~i~~lf~~a~~~~p~II~IDEiD~l~~~ 274 (341)
..+++|+||||||||+||.++|+.+ +..++.++.+++........ ......++... ....+|+|||++.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 4689999999999999999999887 67778888877766432110 00111222222 35689999999764211
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCcHHHHccCC
Q psy15087 275 RSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DIDPAIARRMP 326 (341)
Q Consensus 275 ~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld~al~rRf~ 326 (341)
+.... .|...++.-.. ...-+|.|||... .+...+.+|+.
T Consensus 179 ------~~~~~---~l~~ii~~R~~---~~~ptiitSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 179 ------KNEQV---VLNQIIDRRTA---SMRSVGMLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred ------HHHHH---HHHHHHHHHHh---cCCCEEEEcCCCHHHHHHHhhHHHHHHHh
Confidence 12222 33333333222 1233577788632 35677888874
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.04 E-value=2.5e-09 Score=103.26 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=49.1
Q ss_pred ccc-cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------cEEEeec
Q psy15087 163 SWK-NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-------SFINLDI 233 (341)
Q Consensus 163 ~~~-dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-------~~i~i~~ 233 (341)
-|+ ++.|+++++.++.+.+.... .|.-...+.++|+||||||||++|+++|..++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 89999999999887765532 121234567999999999999999999999965 7777765
No 190
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.03 E-value=8.6e-10 Score=111.41 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=91.2
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC---------------
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV--------------- 226 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~--------------- 226 (341)
..|.++.|+..+++.+.-. .....+++|+||||||||++++.++..+..
T Consensus 188 ~d~~~v~Gq~~~~~al~la----------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT----------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhhee----------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 4788899998877765322 245678999999999999999999876521
Q ss_pred -------------cEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 227 -------------SFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 227 -------------~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
||...+.+.-....+|.....-...+..|.. +++|+||++.+. ...+..|+..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-----------~~~~~~L~~~ 317 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-----------RRTLDALREP 317 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-----------HHHHHHHHHH
Confidence 1111110000111223322222344455544 899999998863 2344555555
Q ss_pred hcCCC---------CCCCCCEEEEEEeCCCC---------------------CCcHHHHccCCceEEecCCCc
Q psy15087 294 WDGLT---------TDKNIDIIIMGATNRPD---------------------DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 294 ld~~~---------~~~~~~viVIatTN~~~---------------------~ld~al~rRf~~~i~i~lP~~ 336 (341)
|+.-. .....++.+|+|+|... .+..++++||+..+.++.|+.
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 53211 11235689999999742 477899999999999998853
No 191
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.03 E-value=6.5e-10 Score=93.66 Aligned_cols=127 Identities=20% Similarity=0.388 Sum_probs=79.1
Q ss_pred cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhhhhhhcCCc
Q psy15087 168 AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTLTDKLYGES 244 (341)
Q Consensus 168 ~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l~~~~~g~~ 244 (341)
+|.+...+++.+.+... ......|||+|++||||+++|+++....+ .+|+.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~------------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL------------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH------------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------
T ss_pred CCCCHHHHHHHHHHHHH------------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------
Confidence 35666667776666542 24456799999999999999999988774 366777776543
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC-C------CC
Q psy15087 245 PKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP-D------DI 317 (341)
Q Consensus 245 ~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~-~------~l 317 (341)
..++..+ ..++|||+|+|.+.. ..+..++..+.... ..++.+|+++..+ . .+
T Consensus 62 ----~~~l~~a---~~gtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ----AELLEQA---KGGTLYLKNIDRLSP-----------EAQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ----HHHHHHC---TTSEEEEECGCCS-H-----------HHHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTH
T ss_pred ----HHHHHHc---CCCEEEECChHHCCH-----------HHHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccch
Confidence 2333333 668999999999843 23444444444322 2345666666542 2 35
Q ss_pred cHHHHccCCceEEecCCC
Q psy15087 318 DPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 318 d~al~rRf~~~i~i~lP~ 335 (341)
++.+..|+.. +.+.+|+
T Consensus 121 ~~~L~~~l~~-~~i~lPp 137 (138)
T PF14532_consen 121 SPDLYYRLSQ-LEIHLPP 137 (138)
T ss_dssp HHHHHHHCST-CEEEE--
T ss_pred hHHHHHHhCC-CEEeCCC
Confidence 6777778876 6777775
No 192
>PRK08181 transposase; Validated
Probab=99.02 E-value=1.1e-08 Score=95.90 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=50.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCC-chHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGE-SPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~-~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
....+++|+||||||||+||.+++.++ |..++.++..++....... ........+... ..+.+|+|||++.+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 345689999999999999999998755 7788888888877654211 111122333332 246799999998864
No 193
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.00 E-value=6.9e-10 Score=113.00 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=90.1
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-EEEe---echhhhhhhc
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS-FINL---DISTLTDKLY 241 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-~i~i---~~s~l~~~~~ 241 (341)
+|.|++.+|..|.-.+....... .......+...+|||+|+||||||++|+++++.+... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~--~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKN--LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccc--cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 48899999888866654421110 0111112345589999999999999999999987543 3221 2222211111
Q ss_pred CC--chH--HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC---------CCCCCCCCEEEE
Q psy15087 242 GE--SPK--LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG---------LTTDKNIDIIIM 308 (341)
Q Consensus 242 g~--~~~--~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~---------~~~~~~~~viVI 308 (341)
.+ ... .-...+.. ...++++|||++.+... .+..|+..|+. ....-+.++.||
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 00 000 00111112 23489999999998432 23344444432 112223568999
Q ss_pred EEeCCCC-------------CCcHHHHccCCceEEe-cCCCcC
Q psy15087 309 GATNRPD-------------DIDPAIARRMPKKYHI-KLPLLS 337 (341)
Q Consensus 309 atTN~~~-------------~ld~al~rRf~~~i~i-~lP~~e 337 (341)
||+|+.+ .+++++++||+..+.+ +.|+.+
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~ 390 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEE 390 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChH
Confidence 9999753 5899999999886543 556654
No 194
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.99 E-value=2.7e-09 Score=106.97 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=75.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhhhhcCCchH---HHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKLYGESPK---LATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~~~~g~~~~---~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+...... -....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3569999999999999999999865 4678889888877655432211 11111111 135679999999988
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC-CC---CCcHHHHccCCceE--EecCCCcCCC
Q psy15087 272 LRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR-PD---DIDPAIARRMPKKY--HIKLPLLSSF 339 (341)
Q Consensus 272 ~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~-~~---~ld~al~rRf~~~i--~i~lP~~e~R 339 (341)
.+.. ... ..|...++..... ... +|.|+|. |+ .+++.+.+||...+ .+..|+.++|
T Consensus 219 ~~k~------~~~---e~lf~l~N~~~~~--~k~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 219 SYKE------KTN---EIFFTIFNNFIEN--DKQ-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred cCCH------HHH---HHHHHHHHHHHHc--CCc-EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 4321 111 2222222222221 123 4445554 43 35789999986444 5666666554
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.98 E-value=5.3e-09 Score=96.64 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=70.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCC---chHHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGE---SPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~---~~~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
..+++|+|+||||||+|+.++|.++ +..++.++.+++....... .......++.... ...+|+|||++...
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~- 175 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT- 175 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC-
Confidence 3589999999999999999999988 7788888888877543221 1111223333332 56899999998853
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCcHHHHccC
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DIDPAIARRM 325 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld~al~rRf 325 (341)
..+....++..+++.. .. .+..+|.|||... .++..+.+|+
T Consensus 176 -----~s~~~~~~l~~Ii~~R---y~---~~~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 176 -----ESRYEKVIINQIVDRR---SS---SKRPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred -----CCHHHHHHHHHHHHHH---Hh---CCCCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 1223333444444432 11 1234677888642 3566777777
No 196
>PRK08116 hypothetical protein; Validated
Probab=98.98 E-value=3e-09 Score=99.77 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhc----CCchHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLY----GESPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~----g~~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
.+.+++|+|+||||||+||.++|+++ +.+++.++.+++...+. +........++.... ...+|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34579999999999999999999986 78888898888765432 111111223333322 3469999999652
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC-CC----CcHHHHccC---CceEEecCCCc
Q psy15087 272 LRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP-DD----IDPAIARRM---PKKYHIKLPLL 336 (341)
Q Consensus 272 ~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~-~~----ld~al~rRf---~~~i~i~lP~~ 336 (341)
. ..++. ...|...++..... +..+|.|||.+ +. ++..+.+|+ ...+.+.-||.
T Consensus 191 ~------~t~~~---~~~l~~iin~r~~~---~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R------DTEWA---REKVYNIIDSRYRK---GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred C------CCHHH---HHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1 11122 23344444433221 23467778864 22 466777774 33345555553
No 197
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.7e-09 Score=101.42 Aligned_cols=146 Identities=21% Similarity=0.377 Sum_probs=96.5
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-----EEEeechhhhhhh-
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS-----FINLDISTLTDKL- 240 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-----~i~i~~s~l~~~~- 240 (341)
+.+.++.++.+...+...+. ...|.++++|||||||||.+++.++.++.-. ++++||....+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 19 LPHREEEINQLASFLAPALR----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 88999999999888655432 1456679999999999999999999988433 7889987654421
Q ss_pred --------------cCCch-HHHHHHHHHHHh-cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q psy15087 241 --------------YGESP-KLATAIFSLAEK-IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNID 304 (341)
Q Consensus 241 --------------~g~~~-~~i~~lf~~a~~-~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~ 304 (341)
.|... .....+++.... ...-||++||+|.|....+ .++-.|+...+ ....+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~----~~~~~ 156 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPG----ENKVK 156 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcc----cccee
Confidence 12221 223333333333 3456999999999975532 22223332222 22456
Q ss_pred EEEEEEeCCCC---CCcHHHHccCCceEEecCCC
Q psy15087 305 IIIMGATNRPD---DIDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 305 viVIatTN~~~---~ld~al~rRf~~~i~i~lP~ 335 (341)
+.+|+.+|..+ .+|+-+.++|... ++.+|.
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~p 189 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPP 189 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCC
Confidence 88999999854 6889999987663 354444
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.1e-09 Score=101.15 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=81.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE--eec--------------hhhh--hhhcCC--chHHHHHHHHHHH-
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFIN--LDI--------------STLT--DKLYGE--SPKLATAIFSLAE- 256 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~--i~~--------------s~l~--~~~~g~--~~~~i~~lf~~a~- 256 (341)
+.+.++||+||+|+||+++|+++|+.+.+.--. -.| +++. ....|. ....++.+...+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999999987442100 000 0000 000011 2234454443332
Q ss_pred ---hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecC
Q psy15087 257 ---KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKL 333 (341)
Q Consensus 257 ---~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~l 333 (341)
.....|++||++|.+. ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+.. +.++.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~ 165 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYSRCQT-WLIHP 165 (325)
T ss_pred ccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHhhceE-EeCCC
Confidence 2344799999999983 2335677777764 455688888999999999999999755 77877
Q ss_pred CCcC
Q psy15087 334 PLLS 337 (341)
Q Consensus 334 P~~e 337 (341)
|+.+
T Consensus 166 ~~~~ 169 (325)
T PRK06871 166 PEEQ 169 (325)
T ss_pred CCHH
Confidence 7654
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=4.3e-09 Score=101.74 Aligned_cols=125 Identities=16% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcE-------------------------EEeechhhhh--------------
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSF-------------------------INLDISTLTD-------------- 238 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------------------------i~i~~s~l~~-------------- 238 (341)
+.+.++||+||+|+||+++|+++|+.+.+.. +.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 6688999999999999999999999885532 1111000000
Q ss_pred hhcC---------CchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCE
Q psy15087 239 KLYG---------ESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDI 305 (341)
Q Consensus 239 ~~~g---------~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~v 305 (341)
.-.| -....++.+...+. .....|++||++|.+. ....+.|+..++. ++.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE----Pp~~t 163 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE----PPPGT 163 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC----CCcCc
Confidence 0000 01123444443332 2234699999999983 2235677777763 45578
Q ss_pred EEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 306 IIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 306 iVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++|.+|++++.|.+.++||+. .+.++.|+.++
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~ 195 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCR-QFPMTVPAPEA 195 (342)
T ss_pred EEEEEECChhhCcHHHHhcCE-EEEecCCCHHH
Confidence 889999999999999999984 58888887654
No 200
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=7e-09 Score=100.17 Aligned_cols=121 Identities=10% Similarity=0.106 Sum_probs=82.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc------------------------EEEeechhhhhhhcCCchHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS------------------------FINLDISTLTDKLYGESPKLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------------------~i~i~~s~l~~~~~g~~~~~i~~lf~ 253 (341)
+.+..+||+||+|+||+++|.++|+.+-+. +..+.... ... .-+...++.+..
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHHH
Confidence 668899999999999999999999987431 11111000 000 011223444443
Q ss_pred HH----HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceE
Q psy15087 254 LA----EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY 329 (341)
Q Consensus 254 ~a----~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i 329 (341)
.+ ......|++||++|++. ....+.|+..|+. ++.++++|..|+.++.|-+.++||+.. +
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq~-~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCRL-H 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcccc-c
Confidence 33 23345799999999983 2335677777764 456788888999999999999999875 7
Q ss_pred EecCCCcC
Q psy15087 330 HIKLPLLS 337 (341)
Q Consensus 330 ~i~lP~~e 337 (341)
.++.|+.+
T Consensus 163 ~~~~~~~~ 170 (334)
T PRK07993 163 YLAPPPEQ 170 (334)
T ss_pred cCCCCCHH
Confidence 88887654
No 201
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.91 E-value=2.3e-09 Score=110.84 Aligned_cols=124 Identities=16% Similarity=0.283 Sum_probs=80.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeechhhhhhhcCCch--HHHH-H--HHH--HHHhcCCeEEEEcccch
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANV--SFINLDISTLTDKLYGESP--KLAT-A--IFS--LAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s~l~~~~~g~~~--~~i~-~--lf~--~a~~~~p~II~IDEiD~ 270 (341)
-.+|||.|+||||||++|++++..++. +|+.+.........+|... ..+. . .|. .......++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 357999999999999999999998754 6888876433333444421 0000 0 000 01112337999999999
Q ss_pred hhhcCCCCchHHHHHHHHHHHHHhcC---------CCCCCCCCEEEEEEeCCCC---CCcHHHHccCCceEEecCC
Q psy15087 271 LLRSRSSSDHEATAQLKSIFLSKWDG---------LTTDKNIDIIIMGATNRPD---DIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 271 l~~~~~~~~~~~~~~i~~~ll~~ld~---------~~~~~~~~viVIatTN~~~---~ld~al~rRf~~~i~i~lP 334 (341)
+.+ ..+..|+..|+. .......++.||+|+|..+ .+.++++.||...+.+..|
T Consensus 96 l~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 96 LDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred CCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 843 334556665542 2222234689999999865 6889999999987765543
No 202
>PRK06526 transposase; Provisional
Probab=98.91 E-value=1.5e-08 Score=94.32 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCC-chHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGE-SPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~-~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
+..+.+++|+||||||||+||.+++.++ |..+..++.+++....... ........+.. -..+.+|+|||++.+.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 3456789999999999999999998765 6666667776665543211 01111122222 2346899999998863
No 203
>KOG1051|consensus
Probab=98.90 E-value=1.2e-08 Score=108.02 Aligned_cols=127 Identities=22% Similarity=0.352 Sum_probs=93.6
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCC--CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh--
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLK--PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD-- 238 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~--~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~-- 238 (341)
.|+||+++...+.+++.... .|+-+ +...+||.||.|+|||-||+++|..+ .-.|+.++++++.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr--------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSR--------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhh--------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 48999999999999987642 12223 56679999999999999999999987 45789999997544
Q ss_pred -------hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCC-------CC
Q psy15087 239 -------KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKN-------ID 304 (341)
Q Consensus 239 -------~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~-------~~ 304 (341)
.|+|.. ....+....++.+.+||+|||||+. ...+++.|+..+|.....++ .+
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 133332 3356777777878899999999994 34456677777764433222 36
Q ss_pred EEEEEEeCC
Q psy15087 305 IIIMGATNR 313 (341)
Q Consensus 305 viVIatTN~ 313 (341)
++||+|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 899999886
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=8.5e-09 Score=98.82 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=80.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEE----Eeechhhhh------h-hc-------CC------chHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFI----NLDISTLTD------K-LY-------GE------SPKLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i----~i~~s~l~~------~-~~-------g~------~~~~i~~lf~ 253 (341)
+-+..+||+||+|+||+++|.++|+.+.+.-- ...+..+.. - ++ |. ....++.+..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 56778999999999999999999988743210 000000000 0 00 11 1223444444
Q ss_pred HHHhc----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceE
Q psy15087 254 LAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY 329 (341)
Q Consensus 254 ~a~~~----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i 329 (341)
.+... ...|++||++|.+. ....+.|+..++. ++.++++|.+|+.++.|-+.|++|+.. +
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE----Pp~~~~fiL~~~~~~~lLpTIrSRCq~-i 167 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEE----PSPGRYLWLISAQPARLPATIRSRCQR-L 167 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhC----CCCCCeEEEEECChhhCchHHHhhheE-e
Confidence 33322 33699999999983 2235667776664 345677888889899999999999865 7
Q ss_pred EecCCCcC
Q psy15087 330 HIKLPLLS 337 (341)
Q Consensus 330 ~i~lP~~e 337 (341)
.++.|+.+
T Consensus 168 ~~~~~~~~ 175 (319)
T PRK08769 168 EFKLPPAH 175 (319)
T ss_pred eCCCcCHH
Confidence 88877764
No 205
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.1e-08 Score=100.48 Aligned_cols=128 Identities=19% Similarity=0.296 Sum_probs=80.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
+...++||||+|+|||+|++|++++. +..++.+....+...++......-..-|..-. .-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45569999999999999999998877 44678888877766554332222222333333 447999999999975
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC---CcHHHHccCCceE--EecCCCcCCC
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD---IDPAIARRMPKKY--HIKLPLLSSF 339 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~---ld~al~rRf~~~i--~i~lP~~e~R 339 (341)
+.. . ..+|......+... ++-+|+++-..|.. +++.+++||...+ .+..|+.+.|
T Consensus 190 k~~-----~----qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 190 KER-----T----QEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Chh-----H----HHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 532 1 22222222222222 23455555455654 4589999988765 5777776544
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.5e-08 Score=97.02 Aligned_cols=121 Identities=13% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc-----------------------EEEeechhhhhhhcCCchHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS-----------------------FINLDISTLTDKLYGESPKLATAIFSL 254 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-----------------------~i~i~~s~l~~~~~g~~~~~i~~lf~~ 254 (341)
+.+.++||+||.|+||+.+|+++|+.+.+. |+.+.... .++. -+...++.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHH
Confidence 668899999999999999999999987432 11111100 0000 012234444333
Q ss_pred HHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEE
Q psy15087 255 AEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYH 330 (341)
Q Consensus 255 a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~ 330 (341)
+.. ....|++||++|.+. ....+.|+..++. ++.++++|..|+.++.+-|.|+||+.. +.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~SRCq~-~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVSRCQQ-WV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccee-Ee
Confidence 322 234799999999983 2335677777764 445688888899999999999999864 88
Q ss_pred ecCCCcC
Q psy15087 331 IKLPLLS 337 (341)
Q Consensus 331 i~lP~~e 337 (341)
++.|+.+
T Consensus 164 ~~~~~~~ 170 (319)
T PRK06090 164 VTPPSTA 170 (319)
T ss_pred CCCCCHH
Confidence 8888764
No 207
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.87 E-value=1.8e-08 Score=98.20 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=94.9
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-------CCcEEEe--
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-------NVSFINL-- 231 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-------~~~~i~i-- 231 (341)
+.-|.-++|++..|..|.-.... ..-.|+|+-|+.|+|||+++|+||..| |++|-.-
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~--------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~ 78 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD--------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPD 78 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc--------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCC
Confidence 44566799999998887554333 224589999999999999999999988 3322110
Q ss_pred ----echhhhhh---------------h----cCCchH----------HHH---HHHH--HHHhcCCeEEEEcccchhhh
Q psy15087 232 ----DISTLTDK---------------L----YGESPK----------LAT---AIFS--LAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 232 ----~~s~l~~~---------------~----~g~~~~----------~i~---~lf~--~a~~~~p~II~IDEiD~l~~ 273 (341)
.|.....+ + .|.++. .+. ..|+ ..-+...+|+++||+..|.
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~- 157 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD- 157 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc-
Confidence 00000000 0 111222 111 1111 1112233799999999873
Q ss_pred cCCCCchHHHHHHHHHHHHHh---------cCCCCCCCCCEEEEEEeCCCC-CCcHHHHccCCceEEecCCCc
Q psy15087 274 SRSSSDHEATAQLKSIFLSKW---------DGLTTDKNIDIIIMGATNRPD-DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~l---------d~~~~~~~~~viVIatTN~~~-~ld~al~rRf~~~i~i~lP~~ 336 (341)
..++..|++.+ +|+......++++|+|+|+.+ .|-+.|+.||...+.+..|..
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~ 220 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLD 220 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCC
Confidence 33444444443 455555667899999999854 788999999999998887764
No 208
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.86 E-value=5.3e-09 Score=104.46 Aligned_cols=151 Identities=19% Similarity=0.294 Sum_probs=97.0
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
.+.+++|.+...+.+...+... .....+|+++|++||||+++|+++.... +.+|+.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI------------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH
Confidence 4456788877777776655431 2345679999999999999999998766 468999999876432
Q ss_pred h-----cCCchH-------HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CC
Q psy15087 240 L-----YGESPK-------LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TD 300 (341)
Q Consensus 240 ~-----~g~~~~-------~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~ 300 (341)
. +|.... .....+. ....++|||||++.|... .+..|+..++.-. ..
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~-----------~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLN-----------LQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHH-----------HHHHHHHHHhhCeEEeCCCCce
Confidence 1 221100 0011122 234589999999998432 3444444443211 11
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 301 KNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 301 ~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
.+.++.+|+||+.. ..+.+.+..|+.. +.|.+|...+|.
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~ 316 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRD 316 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhch
Confidence 12357889998874 2455667677755 889999999884
No 209
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.85 E-value=6.1e-09 Score=110.33 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHh---hc----CCCCCCceEEEECCCCCCHHHHHHHHHHHcC-------CcEEEe
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLK---ES----GLLKPPKGILLYGPPGCGKTMIAKATAKEAN-------VSFINL 231 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~---~~----g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~-------~~~i~i 231 (341)
.|.|.+.+|+.|.-.+........... +. ..++...+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 488999999988665544321110000 00 1134556899999999999999999998653 344444
Q ss_pred echhhhhhhcCC-chHH--HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC---------CCC
Q psy15087 232 DISTLTDKLYGE-SPKL--ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG---------LTT 299 (341)
Q Consensus 232 ~~s~l~~~~~g~-~~~~--i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~---------~~~ 299 (341)
.+..... +.+. .... -...+.. ...+++||||++++... .+..|+..|+. ...
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~~-----------~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHNE-----------SRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCCHH-----------HHHHHHHHHhCCEEEEecCCcce
Confidence 4333221 0000 0000 0111112 23489999999998432 23344444432 222
Q ss_pred CCCCCEEEEEEeCCCC-------------CCcHHHHccCCceEE-ecCCC
Q psy15087 300 DKNIDIIIMGATNRPD-------------DIDPAIARRMPKKYH-IKLPL 335 (341)
Q Consensus 300 ~~~~~viVIatTN~~~-------------~ld~al~rRf~~~i~-i~lP~ 335 (341)
.-+.++.||||+|+.. .+++++++||+..+. .+.|+
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d 645 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHID 645 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCC
Confidence 2245799999999842 477999999998543 34444
No 210
>PRK09087 hypothetical protein; Validated
Probab=98.82 E-value=2.5e-08 Score=91.28 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=65.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCch
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDH 280 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~ 280 (341)
..++|+||+|||||+|+++++...+..++.. ..+... .+.... ..+|+|||++.+.. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~-----~~ 103 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSD-----------AANAAA---EGPVLIEDIDAGGF-----DE 103 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchH-----------HHHhhh---cCeEEEECCCCCCC-----CH
Confidence 4599999999999999999998876654433 222221 111111 15899999998621 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC---CcHHHHccCC--ceEEecCCCcCCC
Q psy15087 281 EATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD---IDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 281 ~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~---ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
+. |...++..... .+.+||+++..|.. ..+.+++||. ..+.+..|+.+.|
T Consensus 104 ~~-------lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 104 TG-------LFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred HH-------HHHHHHHHHhC--CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 11 22222222221 23556655554442 3688999985 5567788877654
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.80 E-value=4.7e-09 Score=92.55 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=48.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCc-hHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGES-PKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~-~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
+..+.|++|+||||||||+||.+++.++ |.++..++.+++........ .......+.... ...+|+|||+...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 3556799999999999999999998876 88888899888877543221 111223333332 4579999999653
No 212
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.79 E-value=3.1e-08 Score=99.68 Aligned_cols=151 Identities=19% Similarity=0.329 Sum_probs=98.6
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
.+.+++|.....+.+.+.+... ......||+.|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL------------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH
Confidence 4567888887777776655431 2345679999999999999999998876 469999999876432
Q ss_pred h-----cCCchHH-------HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-------C
Q psy15087 240 L-----YGESPKL-------ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-------D 300 (341)
Q Consensus 240 ~-----~g~~~~~-------i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-------~ 300 (341)
. +|..... ....+. ....+.+||||++.+... .+..|+..++.... .
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPLD-----------VQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCHH-----------HHHHHHHHHhcCcEEeCCCCCe
Confidence 1 2211100 001122 224579999999998432 33455555442210 0
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 301 KNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 301 ~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
...++.+|+||+.. ..+.+.+..||.. +.|.+|...+|.
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~ 315 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERR 315 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccch
Confidence 12347888888763 2456778888865 899999999885
No 213
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.79 E-value=3.2e-08 Score=99.10 Aligned_cols=151 Identities=22% Similarity=0.359 Sum_probs=95.5
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
.+..++|.+.....+.+.+... ......+|++|++||||+++|+++.... +.+|+.++|..+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~ 208 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI------------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES 208 (457)
T ss_pred cccceecccHHHhHHHHHHHHH------------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH
Confidence 3456777776666655544331 2445679999999999999999997765 579999999876432
Q ss_pred h-----cCCchHH-------HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CC
Q psy15087 240 L-----YGESPKL-------ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TD 300 (341)
Q Consensus 240 ~-----~g~~~~~-------i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~ 300 (341)
. +|..... ....+. ....++|||||++.+... .+..|+..++... ..
T Consensus 209 ~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld~i~~l~~~-----------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 209 LLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLDEIGEMPLV-----------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEechhhCCHH-----------HHHHHHHHHhcCcEEeCCCCce
Confidence 1 2211000 011122 224489999999998432 3444555544211 11
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 301 KNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 301 ~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
...++.+|+|||.. ..+.+.+..|+.. +.+.+|...+|.
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~ 320 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRR 320 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhch
Confidence 12357899999864 2355666667755 889999999885
No 214
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.77 E-value=4.5e-08 Score=92.25 Aligned_cols=145 Identities=20% Similarity=0.312 Sum_probs=89.7
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechhhh
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDISTLT 237 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~l~ 237 (341)
.+|...+++.|...-.. +.+|. .....++||+|++|.|||++++.++... .+|++.+.++.-.
T Consensus 36 WIgY~~A~~~L~~L~~L-l~~P~-------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEEL-LEYPK-------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred eecCHHHHHHHHHHHHH-HhCCc-------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 58888877776554433 33332 2345689999999999999999998765 2467777654321
Q ss_pred hh--------------hc--CCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy15087 238 DK--------------LY--GESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK 301 (341)
Q Consensus 238 ~~--------------~~--g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~ 301 (341)
+. +. ....+....+....+..++.+|+|||++.++.... .. +..+++.+..+.+.-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~----qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RK----QREFLNALKFLGNEL 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HH----HHHHHHHHHHHhhcc
Confidence 11 10 11223344556777888999999999999764321 11 334444444444444
Q ss_pred CCCEEEEEEeCCCC--CCcHHHHccCCc
Q psy15087 302 NIDIIIMGATNRPD--DIDPAIARRMPK 327 (341)
Q Consensus 302 ~~~viVIatTN~~~--~ld~al~rRf~~ 327 (341)
+-.++.+||..... .-|+.+.+||..
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~RF~~ 207 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLASRFEP 207 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHhccCC
Confidence 44566666644322 247888889865
No 215
>KOG1969|consensus
Probab=98.74 E-value=1e-07 Score=97.83 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=93.5
Q ss_pred cCcccccccCcHHHHHHHHHHhhch----hh-------------chhHHhh-cCCC-CC-CceEEEECCCCCCHHHHHHH
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFP----MK-------------NRNLLKE-SGLL-KP-PKGILLYGPPGCGKTMIAKA 219 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~p----l~-------------~~~~~~~-~g~~-~~-~~gvLL~GPpGtGKT~LAka 219 (341)
.+..|.|+.|-+.+-+.+...+... +. ..+.+.. .+.. +| .+-+||+||||-|||+||+-
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 3557889999988877776655421 00 0011111 1111 22 34589999999999999999
Q ss_pred HHHHcCCcEEEeechhhhhhhcCCchHHHHHH-HHHH---HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH---
Q psy15087 220 TAKEANVSFINLDISTLTDKLYGESPKLATAI-FSLA---EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS--- 292 (341)
Q Consensus 220 lA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~l-f~~a---~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~--- 292 (341)
+|+..|+.++.+++++-... ......+..+ +... ...+|.+|+|||||--. ..+.+.++..+..
T Consensus 346 iAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------~~~Vdvilslv~a~~k 416 (877)
T KOG1969|consen 346 IAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------RAAVDVILSLVKATNK 416 (877)
T ss_pred HHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------HHHHHHHHHHHHhhcc
Confidence 99999999999999864321 1111222222 2111 22578999999998742 1222222222211
Q ss_pred HhcCCCCC-------CC---CCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCc
Q psy15087 293 KWDGLTTD-------KN---IDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLL 336 (341)
Q Consensus 293 ~ld~~~~~-------~~---~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~ 336 (341)
...|-... .+ -.--|||.||.. --|+|+. -|...++|..|..
T Consensus 417 ~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 417 QATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred hhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCCh
Confidence 00111100 00 013478888863 4466655 5777777777754
No 216
>KOG0478|consensus
Probab=98.74 E-value=1.7e-08 Score=102.60 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=95.0
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe-echhhhh--hhc--
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINL-DISTLTD--KLY-- 241 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i-~~s~l~~--~~~-- 241 (341)
|.|++.+|+.|.-.+..... ..+...|-.+..-++||+|.||||||.+.+.+++-+..-.+.- .++.-.. .|+
T Consensus 431 Iye~edvKkglLLqLfGGt~--k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTR--KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhcccchhhhHHHHHhcCCc--ccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 67777777776544432211 1112222234456899999999999999999998774333221 1111000 010
Q ss_pred -CCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----
Q psy15087 242 -GESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD----- 315 (341)
Q Consensus 242 -g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~----- 315 (341)
++..+.+-+- ...--+..+|.+|||||++.....+..++.++ ++++-....|+-..-+.+.-|+|++|+..
T Consensus 509 d~dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvLhEvME--QQTvSIAKAGII~sLNAR~SVLAaANP~~skynp 585 (804)
T KOG0478|consen 509 DPDTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVLHEVME--QQTLSIAKAGIIASLNARCSVLAAANPIRSKYNP 585 (804)
T ss_pred cCccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHHHHHHH--HhhhhHhhcceeeeccccceeeeeeccccccCCC
Confidence 1111111000 00011244899999999996555555555555 34444445565555567788999999532
Q ss_pred --------CCcHHHHccCCceE-EecCCCcC
Q psy15087 316 --------DIDPAIARRMPKKY-HIKLPLLS 337 (341)
Q Consensus 316 --------~ld~al~rRf~~~i-~i~lP~~e 337 (341)
.|++.|++||+..+ .++-||+.
T Consensus 586 ~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 586 NKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred CCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 47899999999855 34555543
No 217
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.73 E-value=6.6e-08 Score=79.71 Aligned_cols=74 Identities=24% Similarity=0.444 Sum_probs=48.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--------CCcEEEeechhhhhh----------h----cC--CchHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA--------NVSFINLDISTLTDK----------L----YG--ESPKLATAIFSL 254 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l--------~~~~i~i~~s~l~~~----------~----~g--~~~~~i~~lf~~ 254 (341)
..+.++++||||+|||++++.++..+ ..+++.++++..... + .. ........+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34679999999999999999999987 677888877654310 0 01 123334445555
Q ss_pred HHhcCCeEEEEcccchhh
Q psy15087 255 AEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 255 a~~~~p~II~IDEiD~l~ 272 (341)
.......+|+|||+|.+.
T Consensus 83 l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHCTEEEEEEETTHHHH
T ss_pred HHhcCCeEEEEeChHhcC
Confidence 555555699999999974
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.73 E-value=3.7e-08 Score=94.87 Aligned_cols=122 Identities=21% Similarity=0.292 Sum_probs=71.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcC---CchHHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYG---ESPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g---~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
..+++|+||||||||+||.++|+++ +..++.++..++...... .........+... ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999987 778888888887664321 1111111112222 2457999999977521
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC-CC----CcHHHHccCCceE-EecCCC
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP-DD----IDPAIARRMPKKY-HIKLPL 335 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~-~~----ld~al~rRf~~~i-~i~lP~ 335 (341)
.++.. ..|...++..... +.-+|.|||.+ +. +++.+.+|+.... .+.++.
T Consensus 261 ------t~~~~---~~Lf~iin~R~~~---~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 261 ------TEFSK---SELFNLINKRLLR---QKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred ------CHHHH---HHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecC
Confidence 11222 2233333322221 12356677763 22 4677888774432 344443
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.71 E-value=1.4e-07 Score=90.06 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=49.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCc-hHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGES-PKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~-~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
...|++|+||+|||||+||.|+|+++ |.++..+..+++........ .......+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999988 77788888777655432110 01122233322 24579999999764
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.4e-07 Score=87.76 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=50.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCchH--HHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGESPK--LATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~~~--~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
.+.+++|+||||+|||+||-|+++++ |..+..+..++++......... .-..+.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 56799999999999999999998887 7888999999887754321111 111111211 24579999999775
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=4.6e-08 Score=91.29 Aligned_cols=73 Identities=27% Similarity=0.347 Sum_probs=49.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCC-chHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGE-SPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~-~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
....+++|+||||||||+||.+++... |..+..+++.++...+... ....+...+... ...+.+++|||++..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 456789999999999999999997654 6677777777766433211 111133344332 235689999999875
No 222
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=5.2e-08 Score=93.82 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------------------EEEeechhhhhhhcC-----CchHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS-------------------------FINLDISTLTDKLYG-----ESPKL 247 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-------------------------~i~i~~s~l~~~~~g-----~~~~~ 247 (341)
+.+.++||+||+|+|||++|+.+|+.+.+. |+.+....-. ...| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 667889999999999999999999987431 2222211000 0001 12334
Q ss_pred HHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHc
Q psy15087 248 ATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323 (341)
Q Consensus 248 i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~r 323 (341)
++.+...+.. ....|++||+++.+.. ...+.++..++... .++.+|.+|+.++.+.+.+++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 5665555543 2346999999999832 23455666665442 235566688888899999999
Q ss_pred cCCceEEecCCCcC
Q psy15087 324 RMPKKYHIKLPLLS 337 (341)
Q Consensus 324 Rf~~~i~i~lP~~e 337 (341)
|+.. +.++.|+.+
T Consensus 163 Rc~~-~~~~~~~~~ 175 (325)
T PRK08699 163 RCRK-MVLPAPSHE 175 (325)
T ss_pred Hhhh-hcCCCCCHH
Confidence 9855 778777654
No 223
>KOG0990|consensus
Probab=98.68 E-value=3.6e-08 Score=92.76 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=91.1
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE------EE
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF------IN 230 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~------i~ 230 (341)
+...+...+++++++++...+.+....+ +-| +.|+|||||+|||+...+.|..+-.+. ..
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~~-------------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGMP-------------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccCC-------------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 3455778889999999988888773321 223 899999999999999999999886641 11
Q ss_pred eechhhhhhhcCCc-hHHHHHHHHHHHh-------cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCC
Q psy15087 231 LDISTLTDKLYGES-PKLATAIFSLAEK-------IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKN 302 (341)
Q Consensus 231 i~~s~l~~~~~g~~-~~~i~~lf~~a~~-------~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~ 302 (341)
+++++ ..|-. ...-...|...+. ..+..+++||.|++... .++.|-...+.. .
T Consensus 99 lnaSd----~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-----------AQnALRRviek~----t 159 (360)
T KOG0990|consen 99 LNASD----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-----------AQNALRRVIEKY----T 159 (360)
T ss_pred hhccC----ccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-----------HHHHHHHHHHHh----c
Confidence 11111 11111 1112233443332 26689999999998533 223333333322 2
Q ss_pred CCEEEEEEeCCCCCCcHHHHccCCceEEecC
Q psy15087 303 IDIIIMGATNRPDDIDPAIARRMPKKYHIKL 333 (341)
Q Consensus 303 ~~viVIatTN~~~~ld~al~rRf~~~i~i~l 333 (341)
.++.++.-+|.+..+.+++++||.+.-+=++
T Consensus 160 ~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl 190 (360)
T KOG0990|consen 160 ANTRFATISNPPQKIHPAQQSRCTRFRFAPL 190 (360)
T ss_pred cceEEEEeccChhhcCchhhcccccCCCCCC
Confidence 3456667799999999999998876333333
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=98.67 E-value=7.1e-08 Score=102.55 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=83.6
Q ss_pred CceEEEEC--CCCCCHHHHHHHHHHHc-----CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhc------CCeEEEEc
Q psy15087 200 PKGILLYG--PPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKLYGESPKLATAIFSLAEKI------QPCIIFID 266 (341)
Q Consensus 200 ~~gvLL~G--PpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~------~p~II~ID 266 (341)
.-.-+..| |++.|||++|+++|+++ +.+++.+++++..+ ...++.+...+... +..|++||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33456678 99999999999999998 56799999987422 12344444332221 23699999
Q ss_pred ccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 267 EIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 267 EiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
|+|.+.. ..++.|+..|+. ++.++.+|++||.++.+.+++++|+. .+.|+.|+.+
T Consensus 638 EaD~Lt~-----------~AQnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~ 692 (846)
T PRK04132 638 EADALTQ-----------DAQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDE 692 (846)
T ss_pred CcccCCH-----------HHHHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHH
Confidence 9999842 235667776664 23468899999999999999999974 4888777643
No 225
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=1.4e-07 Score=78.34 Aligned_cols=69 Identities=32% Similarity=0.392 Sum_probs=46.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN--VSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
+.++|+||.|||||++++.+++.+. ..++.+++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 67777776655432111111 122222222225689999999987
No 226
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.65 E-value=1.8e-07 Score=91.18 Aligned_cols=102 Identities=21% Similarity=0.351 Sum_probs=60.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCC-cEEEeechhhhhhh-------cCCchHHHHHHHHHHHhcCCeEEEEccc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANV-SFINLDISTLTDKL-------YGESPKLATAIFSLAEKIQPCIIFIDEI 268 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-~~i~i~~s~l~~~~-------~g~~~~~i~~lf~~a~~~~p~II~IDEi 268 (341)
..+++|++||||+|+|||+|+..+...+.. .-..+....++... .+.... +..+-....+ ...+|||||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~-l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDP-LPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCcc-HHHHHHHHHh-cCCEEEEeee
Confidence 357899999999999999999999888754 22233333333321 112111 2222222211 3359999999
Q ss_pred chhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 269 DSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 269 D~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
+-- . -+...++..|+..+- ..++++|+|+|++
T Consensus 137 ~V~----D----iaDAmil~rLf~~l~------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT----D----IADAMILKRLFEALF------KRGVVLVATSNRP 168 (362)
T ss_pred ecc----c----hhHHHHHHHHHHHHH------HCCCEEEecCCCC
Confidence 763 1 123344555555442 1458999999984
No 227
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.61 E-value=1.5e-07 Score=97.87 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=42.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
+..|++|+|++++++.|...+.. ..+++|+||||||||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 56899999999999998887643 24799999999999999999998764
No 228
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.60 E-value=1.3e-07 Score=94.98 Aligned_cols=153 Identities=21% Similarity=0.308 Sum_probs=96.0
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL 240 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~ 240 (341)
+..++|......++...+... ......+++.|.+||||+++|+++.... +.+|+.++|..+...+
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~ 200 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL------------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDL 200 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHH
Confidence 345788887777776655431 2345679999999999999999998775 5699999998764322
Q ss_pred -----cCCchHH----HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCCCCC
Q psy15087 241 -----YGESPKL----ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDKNID 304 (341)
Q Consensus 241 -----~g~~~~~----i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~~~~ 304 (341)
+|..... .............++|||||++.+... .+..|+..++... .....+
T Consensus 201 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-----------~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 201 IESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-----------AQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-----------HHHHHHHHHhcCcEEECCCCceeeee
Confidence 2211000 000000112234589999999998432 2344554443211 011124
Q ss_pred EEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 305 IIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 305 viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
+.+|++|+.. ..+.+.+..|+.. +.+.+|...+|.
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~ 311 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERR 311 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccch
Confidence 7788888763 2455677777754 799999998884
No 229
>PRK15115 response regulator GlrR; Provisional
Probab=98.59 E-value=3.5e-07 Score=91.39 Aligned_cols=128 Identities=23% Similarity=0.442 Sum_probs=79.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh-----cCCchH-------HHHHHHHHHHhcCCeE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL-----YGESPK-------LATAIFSLAEKIQPCI 262 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~-----~g~~~~-------~i~~lf~~a~~~~p~I 262 (341)
.....|+++|++||||+++|+++.... +.+|+.++|..+.... +|.... .....+. ....++
T Consensus 155 ~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gt 231 (444)
T PRK15115 155 QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGT 231 (444)
T ss_pred cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCE
Confidence 334579999999999999999998775 5799999998764321 111100 0001112 234579
Q ss_pred EEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCCCCCEEEEEEeCCC-------CCCcHHHHccCCce
Q psy15087 263 IFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDKNIDIIIMGATNRP-------DDIDPAIARRMPKK 328 (341)
Q Consensus 263 I~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~~~~viVIatTN~~-------~~ld~al~rRf~~~ 328 (341)
|||||+|.|... .+..|+..++... .....++.+|+||+.. ..+.+.+..|+..
T Consensus 232 l~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~- 299 (444)
T PRK15115 232 LFLDEIGDMPAP-----------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNV- 299 (444)
T ss_pred EEEEccccCCHH-----------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhce-
Confidence 999999998533 2344454443211 1112257889998863 1233444445544
Q ss_pred EEecCCCcCCCC
Q psy15087 329 YHIKLPLLSSFS 340 (341)
Q Consensus 329 i~i~lP~~e~R~ 340 (341)
+.|.+|...+|.
T Consensus 300 ~~i~lPpLr~R~ 311 (444)
T PRK15115 300 VSLKIPALAERT 311 (444)
T ss_pred eeecCCChHhcc
Confidence 789999998884
No 230
>PRK06921 hypothetical protein; Provisional
Probab=98.58 E-value=3.8e-07 Score=85.51 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=45.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
...+++|+||||+|||+|+.++|+++ +..++.+...++........ ......+.. -....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 35689999999999999999999876 56777777766554321111 111112222 23457999999954
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=2.3e-07 Score=96.28 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=47.7
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
.+..+++++|+++.+++|...+..... + ..+...++|+||||||||++++.+|.+++..++
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 477899999999999998887654211 1 133445999999999999999999999876553
No 232
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=7.7e-07 Score=84.06 Aligned_cols=121 Identities=21% Similarity=0.157 Sum_probs=78.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec--------hhhhhhh-cCC----chHHHHHHHHHHHh----cCC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI--------STLTDKL-YGE----SPKLATAIFSLAEK----IQP 260 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~--------s~l~~~~-~g~----~~~~i~~lf~~a~~----~~p 260 (341)
+.+..+||+||+|+||+.+|.++|+.+-+.--.-.| +++..-. .+. +...++.+...+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 667889999999999999999999988542100011 0100000 011 12234444444332 234
Q ss_pred eEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCC
Q psy15087 261 CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 261 ~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP 334 (341)
.|++||++|.+. ....+.|+..++. ++.++++|..|+.++.+.|.+++|+.. +.|+.+
T Consensus 97 kv~ii~~ad~mt-----------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT-----------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred eEEEEechhhcC-----------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcceE-EEccch
Confidence 699999999983 2335677777664 445688888888899999999999754 555544
No 233
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.54 E-value=2.1e-07 Score=89.75 Aligned_cols=70 Identities=31% Similarity=0.420 Sum_probs=51.2
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechhhhhhh
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--VSFINLDISTLTDKL 240 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~l~~~~ 240 (341)
..+.++||.++++..--.+... + .+ .-..+++||.||||||||.||-++|+++| .||+.++++++.+.-
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mI-------k-~~-K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e 92 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMI-------K-EG-KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSE 92 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHH-------H-TT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTT
T ss_pred ccccccChHHHHHHHHHHHHHH-------h-cc-cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecc
Confidence 3457999999999887766542 1 11 13578999999999999999999999996 899999999986643
Q ss_pred c
Q psy15087 241 Y 241 (341)
Q Consensus 241 ~ 241 (341)
+
T Consensus 93 ~ 93 (398)
T PF06068_consen 93 V 93 (398)
T ss_dssp C
T ss_pred c
Confidence 3
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.54 E-value=1.1e-06 Score=74.35 Aligned_cols=72 Identities=29% Similarity=0.468 Sum_probs=47.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh----------------------cCC--chHHHHHHHHHH
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL----------------------YGE--SPKLATAIFSLA 255 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~----------------------~g~--~~~~i~~lf~~a 255 (341)
++++||||+|||+++..++... +.+++.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 4566665543322100 001 111122334556
Q ss_pred HhcCCeEEEEcccchhhhc
Q psy15087 256 EKIQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 256 ~~~~p~II~IDEiD~l~~~ 274 (341)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6778899999999988644
No 235
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.50 E-value=5.4e-07 Score=86.14 Aligned_cols=154 Identities=20% Similarity=0.330 Sum_probs=102.5
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
....|+.+++.+...+.+.+..... . .-...+|+.|..||||-++|++....+ ..||+.++|..+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~----------A--mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKL----------A--MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHh----------h--ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 3556778888777766665443321 1 223359999999999999999997665 679999999887
Q ss_pred hhh-----hcCCch--HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCCC
Q psy15087 237 TDK-----LYGESP--KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDKN 302 (341)
Q Consensus 237 ~~~-----~~g~~~--~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~~ 302 (341)
.+. .+|... +--..+|+.|.. +.+|+|||..+. .+++..++..+..-. ..-.
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmS-----------p~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMS-----------PRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcC-----------HHHHHHHHHHhcCCceeecCCcceEE
Confidence 653 233222 223567777765 899999998873 445666666654221 1112
Q ss_pred CCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 303 IDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 303 ~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
..|.|||||..+ ...-+.+.-|+.. +.+.+|...+|.
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer~ 376 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNV-LTLNLPPLRERP 376 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhhe-eeecCCccccCc
Confidence 358999999763 1233455557654 788999888874
No 236
>KOG2035|consensus
Probab=98.49 E-value=1.2e-06 Score=81.30 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=93.1
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-C--CcEEEe------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-N--VSFINL------ 231 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-~--~~~i~i------ 231 (341)
+.+++.+.+.++....|+..... ..-.++|+|||+|+||-+.+.++-+++ | .+=..+
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 45666788888888888765431 223589999999999999999998877 2 111111
Q ss_pred -------echhhhhhh--------cCCchH-HHHHHHHHHHhc---------CCeEEEEcccchhhhcCCCCchHHHHHH
Q psy15087 232 -------DISTLTDKL--------YGESPK-LATAIFSLAEKI---------QPCIIFIDEIDSLLRSRSSSDHEATAQL 286 (341)
Q Consensus 232 -------~~s~l~~~~--------~g~~~~-~i~~lf~~a~~~---------~p~II~IDEiD~l~~~~~~~~~~~~~~i 286 (341)
..+.+.+.| .|.... .++.+....... .-.|++|.|+|.|..+ .
T Consensus 75 tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d-----------A 143 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD-----------A 143 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH-----------H
Confidence 111111111 233333 344444433222 2269999999998543 2
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 287 KSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 287 ~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+..|-..|+.. ..++.+|..+|..+.+-+++++|+- .+.++.|+.++
T Consensus 144 Q~aLRRTMEkY----s~~~RlIl~cns~SriIepIrSRCl-~iRvpaps~ee 190 (351)
T KOG2035|consen 144 QHALRRTMEKY----SSNCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEE 190 (351)
T ss_pred HHHHHHHHHHH----hcCceEEEEecCcccchhHHhhhee-EEeCCCCCHHH
Confidence 33333334332 2457888899999999999999974 48888888654
No 237
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.47 E-value=3.1e-07 Score=87.73 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=56.4
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechhhhhhhc
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--VSFINLDISTLTDKLY 241 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~l~~~~~ 241 (341)
=+.++||.++.+..--++... + .| ....++||+.||||||||.||-++|+++| .||+.++++++.+.-.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mi-------k-~g-k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMI-------K-QG-KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred CCcccchHHHHHhhhHHHHHH-------H-hC-cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence 345899999988765554431 1 12 24678999999999999999999999995 7999999999876544
Q ss_pred CCchH
Q psy15087 242 GESPK 246 (341)
Q Consensus 242 g~~~~ 246 (341)
..++.
T Consensus 109 kKTE~ 113 (450)
T COG1224 109 KKTEA 113 (450)
T ss_pred cHHHH
Confidence 44433
No 238
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.47 E-value=2.7e-07 Score=95.16 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=86.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechhhhhhhcCCch--H--------HHHHHHHHHHhcCCeEEEEccc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN--VSFINLDISTLTDKLYGESP--K--------LATAIFSLAEKIQPCIIFIDEI 268 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~l~~~~~g~~~--~--------~i~~lf~~a~~~~p~II~IDEi 268 (341)
.||||-|++|+|||+++++++..+. .||+.+..+.-....+|... . .-..++..|. .+|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999985 48988877665555666541 1 1112223332 379999999
Q ss_pred chhhhcCCCCchHHHHHHHHHHHHHhc---------CCCCCCCCCEEEEEEeCCC---CCCcHHHHccCCceEEecCCCc
Q psy15087 269 DSLLRSRSSSDHEATAQLKSIFLSKWD---------GLTTDKNIDIIIMGATNRP---DDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 269 D~l~~~~~~~~~~~~~~i~~~ll~~ld---------~~~~~~~~~viVIatTN~~---~~ld~al~rRf~~~i~i~lP~~ 336 (341)
..+. ..++..|+.-|+ +.......++++|++-|.. ..+.++++.||+..+.+..|+.
T Consensus 103 n~~~-----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCCh
Confidence 9873 334556666654 3333344578889875432 3588999999999998887764
Q ss_pred C
Q psy15087 337 S 337 (341)
Q Consensus 337 e 337 (341)
.
T Consensus 172 ~ 172 (584)
T PRK13406 172 R 172 (584)
T ss_pred H
Confidence 3
No 239
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.47 E-value=3.6e-08 Score=102.12 Aligned_cols=158 Identities=23% Similarity=0.254 Sum_probs=88.1
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE-eechh---hhhhhc
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN-LDIST---LTDKLY 241 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~-i~~s~---l~~~~~ 241 (341)
.|.|++.+|+.|.-.+...... ...+...++.--++||.|-||+|||.|.+.+++.+...++. -.+++ +.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 4889999999886655432111 11111113445689999999999999999999887544432 11111 111100
Q ss_pred CCch--H--HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC--
Q psy15087 242 GESP--K--LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-- 315 (341)
Q Consensus 242 g~~~--~--~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-- 315 (341)
.+.. . .-...+.. ..++|++|||+|++........++++++ +++-..-.|+...-+.++-|+||+|+..
T Consensus 365 rd~~tge~~LeaGALVl---AD~Gv~cIDEfdKm~~~dr~aihEaMEQ--QtIsIaKAGI~atLnARcsvLAAaNP~~Gr 439 (682)
T COG1241 365 RDKVTGEWVLEAGALVL---ADGGVCCIDEFDKMNEEDRVAIHEAMEQ--QTISIAKAGITATLNARCSVLAAANPKFGR 439 (682)
T ss_pred EccCCCeEEEeCCEEEE---ecCCEEEEEeccCCChHHHHHHHHHHHh--cEeeecccceeeecchhhhhhhhhCCCCCc
Confidence 0000 0 00111112 2458999999999854332333333331 1111111233333345678899999854
Q ss_pred -----------CCcHHHHccCCceEE
Q psy15087 316 -----------DIDPAIARRMPKKYH 330 (341)
Q Consensus 316 -----------~ld~al~rRf~~~i~ 330 (341)
.++++|++||+..+.
T Consensus 440 yd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 440 YDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred CCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 478899999997553
No 240
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.4e-06 Score=80.77 Aligned_cols=121 Identities=15% Similarity=0.056 Sum_probs=77.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE------eechhhhhh------h-cC----CchHHHHHHHHHHH----
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFIN------LDISTLTDK------L-YG----ESPKLATAIFSLAE---- 256 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~------i~~s~l~~~------~-~g----~~~~~i~~lf~~a~---- 256 (341)
.++..+||+||+|+||..+|.++|+.+-+.--. -+|..+... + .. -....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 678899999999999999999999877432100 011111000 0 00 11223343333221
Q ss_pred -hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCC
Q psy15087 257 -KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 257 -~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP 334 (341)
.....|++|+++|++. ....+.|+..++. ++.++++|..|+.++.+-+.+++|+.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m~-----------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-----------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC-----------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 1235799999999983 2335677777664 456788888999999999999999754 555544
No 241
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.39 E-value=7.9e-07 Score=81.60 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS 278 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~ 278 (341)
...+-.++||+|||||.+++.+|..+|.+++.++|++.++ ...+.+++.-+... .+.+++||++++....
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v--- 100 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV--- 100 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH---
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH---
Confidence 3456789999999999999999999999999999987553 34556666554443 4899999999984321
Q ss_pred chHHHHHHHHHHHHHhcCCCC---------CCCCCEEEEEEeCC----CCCCcHHHHccCCceEEecCCCc
Q psy15087 279 DHEATAQLKSIFLSKWDGLTT---------DKNIDIIIMGATNR----PDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 279 ~~~~~~~i~~~ll~~ld~~~~---------~~~~~viVIatTN~----~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
.......+..+...+..-.. .-+..+-++.|.|. ...+++.++.-|+. +.+..||.
T Consensus 101 -LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRp-vam~~PD~ 169 (231)
T PF12774_consen 101 -LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRP-VAMMVPDL 169 (231)
T ss_dssp -HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEE-EE--S--H
T ss_pred -HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhhe-eEEeCCCH
Confidence 11111112222222221110 01123556667774 34688888777754 77888874
No 242
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.38 E-value=1e-06 Score=87.80 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh--
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL-- 240 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~-- 240 (341)
.+.|.......+...+... ......++++|.+||||+++|+++.... +.+|+.++|..+....
T Consensus 140 ~lig~s~~~~~~~~~i~~~------------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV------------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhc------------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH
Confidence 3556665555554443321 2445679999999999999999997665 5799999998764322
Q ss_pred ---cCCchHHH----HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-------CCCCCEE
Q psy15087 241 ---YGESPKLA----TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-------DKNIDII 306 (341)
Q Consensus 241 ---~g~~~~~i----~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-------~~~~~vi 306 (341)
+|...... ............++||||||+.|... .+..++..++.... ....++.
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-----------~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-----------MQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-----------HHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 12110000 00000112234689999999998533 23445554442210 1112467
Q ss_pred EEEEeCCCC-------CCcHHHHccCCceEEecCCCcCCCC
Q psy15087 307 IMGATNRPD-------DIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 307 VIatTN~~~-------~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
+|+||+.+- .+.+.+..|+.. +.+.+|...+|.
T Consensus 277 ii~~t~~~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~ 316 (441)
T PRK10365 277 LIAATHRDLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRR 316 (441)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhcc
Confidence 888887631 244455556544 789999998884
No 243
>KOG0480|consensus
Probab=98.34 E-value=1.4e-07 Score=95.46 Aligned_cols=161 Identities=21% Similarity=0.240 Sum_probs=90.6
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec----hhhh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI----STLT 237 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~----s~l~ 237 (341)
.-|-.|.|.+.+|.-|.-.+........- .+.. ++.--+|++.|.||+|||-+.++++.-+...++...- +.+.
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~-lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAG-EGTS-LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLT 419 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCC-CCcc-ccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccce
Confidence 34667899999999886655432211100 1111 3445679999999999999999999887655443221 1111
Q ss_pred hhhcCCch--HHH--HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 238 DKLYGESP--KLA--TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 238 ~~~~g~~~--~~i--~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
...+.+.+ ... ...+..| ..+|.+|||||++-...+-..++++++ +++-..-.|+.-.-+.+.-|+||+|+
T Consensus 420 aaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKMd~~dqvAihEAMEQ--QtISIaKAGv~aTLnARtSIlAAANP 494 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKMDVKDQVAIHEAMEQ--QTISIAKAGVVATLNARTSILAAANP 494 (764)
T ss_pred EEEEecCCCCceeeecCcEEEc---cCceEEechhcccChHhHHHHHHHHHh--heehheecceEEeecchhhhhhhcCC
Confidence 11111110 000 1111222 348999999999854333333333331 12211122332223345678899987
Q ss_pred CC-------------CCcHHHHccCCceE
Q psy15087 314 PD-------------DIDPAIARRMPKKY 329 (341)
Q Consensus 314 ~~-------------~ld~al~rRf~~~i 329 (341)
.. .+++++++||+..+
T Consensus 495 v~GhYdR~ktl~eNi~msApimSRFDL~F 523 (764)
T KOG0480|consen 495 VGGHYDRKKTLRENINMSAPIMSRFDLFF 523 (764)
T ss_pred cCCccccccchhhhcCCCchhhhhhcEEE
Confidence 43 47899999999844
No 244
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.32 E-value=1.7e-05 Score=73.72 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
+..++|+||+|+|||++++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44588999999999999999999875
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.31 E-value=4.2e-08 Score=94.75 Aligned_cols=153 Identities=23% Similarity=0.272 Sum_probs=74.6
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh-----hhhhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST-----LTDKL 240 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~-----l~~~~ 240 (341)
.|.|.+.+|..+.-.+........ ...+..+..-++||+|.||+|||.|.+.+++.....++ +++.. +....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~--~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKND--PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCC--CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccccc--ccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCcccee
Confidence 478999988877544433221110 00000234568999999999999999988766544332 22221 11111
Q ss_pred cC---CchHH-HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC---------CCCCCCCCEEE
Q psy15087 241 YG---ESPKL-ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG---------LTTDKNIDIII 307 (341)
Q Consensus 241 ~g---~~~~~-i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~---------~~~~~~~~viV 307 (341)
.. ..+.. -...+..| ..+|+||||+|.+... ....++..|+. +...-+.++-|
T Consensus 102 ~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~-----------~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED-----------DRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH-----------HHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccccceeEEeCCchhcc---cCceeeecccccccch-----------HHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 00 00000 11233344 3499999999998321 13445555543 11112346889
Q ss_pred EEEeCCCC-------------CCcHHHHccCCceEEe-cCCC
Q psy15087 308 MGATNRPD-------------DIDPAIARRMPKKYHI-KLPL 335 (341)
Q Consensus 308 IatTN~~~-------------~ld~al~rRf~~~i~i-~lP~ 335 (341)
+|++|+.. .+++++++||+..+.+ +.|+
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccc
Confidence 99999765 3678999999986543 4443
No 246
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=1.5e-06 Score=77.92 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=32.3
Q ss_pred cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 168 AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 168 ~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+|.+...+.|.+.+.. .+...++|+||.|+|||+|++.+...+
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 4667777777665533 346789999999999999999999988
No 247
>KOG0477|consensus
Probab=98.30 E-value=3.1e-07 Score=92.74 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=90.2
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh----h-----
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST----L----- 236 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~----l----- 236 (341)
.|.|+..+|..+.-++.........-+ . .++.-.+|||+|.||||||.+.|.+++-....++...... +
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k-h-kvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK-H-KVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC-c-eeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 378999999988777654322211000 0 0344567999999999999999999988766655432111 1
Q ss_pred ----hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHH-----HHHHHHHhcCCCCCCCCCEEE
Q psy15087 237 ----TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQL-----KSIFLSKWDGLTTDKNIDIII 307 (341)
Q Consensus 237 ----~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i-----~~~ll~~ld~~~~~~~~~viV 307 (341)
...|--+ ...+..|. .+|.+|||+|++........++++++- ..-+.+.| +.++.|
T Consensus 528 KdPvtrEWTLE-----aGALVLAD---kGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsL-------qArctv 592 (854)
T KOG0477|consen 528 KDPVTREWTLE-----AGALVLAD---KGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL-------QARCTV 592 (854)
T ss_pred eCCccceeeec-----cCeEEEcc---CceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHH-------Hhhhhh
Confidence 1111111 11122333 389999999999765555566665532 11122222 346889
Q ss_pred EEEeCCCC-------------CCcHHHHccCCceEE
Q psy15087 308 MGATNRPD-------------DIDPAIARRMPKKYH 330 (341)
Q Consensus 308 IatTN~~~-------------~ld~al~rRf~~~i~ 330 (341)
|+|+|+.. .+.+.+++||+....
T Consensus 593 IAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcV 628 (854)
T KOG0477|consen 593 IAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCV 628 (854)
T ss_pred heecCCCCCccCCccchhhccccccchhhhcceeee
Confidence 99999721 466889999986443
No 248
>KOG2228|consensus
Probab=98.28 E-value=5e-06 Score=79.08 Aligned_cols=148 Identities=20% Similarity=0.359 Sum_probs=88.5
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHH---HHHcCCcEEEeechh--hhh---
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKAT---AKEANVSFINLDIST--LTD--- 238 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkal---A~~l~~~~i~i~~s~--l~~--- 238 (341)
+.|.....+.+.+.+..... .....+|++.||.|+|||++.... +++.|-.|+.+.... ..+
T Consensus 26 l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 56766666667666544211 256778999999999999976655 335666665544321 111
Q ss_pred ----------------hhcCCchHHHHHHHHHHHhc-----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 239 ----------------KLYGESPKLATAIFSLAEKI-----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 239 ----------------~~~g~~~~~i~~lf~~a~~~-----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
+.+|.....+..+....+.. .+-|.++||||-+.+.. .++++..+-.+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-----------rQtllYnlfDi 164 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-----------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-----------hhHHHHHHHHH
Confidence 12344444444454444322 12355568999986532 23444444334
Q ss_pred CCCCCCCEEEEEEeCCCCC---CcHHHHccCCceEEecCCC
Q psy15087 298 TTDKNIDIIIMGATNRPDD---IDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~---ld~al~rRf~~~i~i~lP~ 335 (341)
....+.++.|||.|.+-+. +...+.+||..+..+-+|.
T Consensus 165 sqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~ 205 (408)
T KOG2228|consen 165 SQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPS 205 (408)
T ss_pred HhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCC
Confidence 4444668999999988664 4567777999985544443
No 249
>KOG2170|consensus
Probab=98.28 E-value=3.8e-06 Score=78.75 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=66.0
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeech-------
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDIS------- 234 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s------- 234 (341)
+.||.-+++.+..++...+..+. -+.|-.+=|+|++||||+.+++.||+.+ ..+++..-.+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~-------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN-------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC-------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 78999999999888887655543 2445556699999999999999999876 2233221111
Q ss_pred hhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 235 TLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
.-.+.| .++.-+.+...+..++.+++++||+|++.
T Consensus 157 ~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 111112 23344556667778888999999999984
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.27 E-value=4.5e-06 Score=74.88 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=50.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh--------h----c-----------CCchHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK--------L----Y-----------GESPKLATA 250 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~--------~----~-----------g~~~~~i~~ 250 (341)
+....-++++||||||||+++..++... +...+.++..++... + . .+....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 4556679999999999999999987644 556676666431110 0 0 000112344
Q ss_pred HHHHHHhcCCeEEEEcccchhhh
Q psy15087 251 IFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 251 lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
+...+....+++|+||-+..+..
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhH
Confidence 44445555789999999999864
No 251
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.27 E-value=3.1e-06 Score=68.18 Aligned_cols=23 Identities=52% Similarity=0.914 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHcC
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~ 225 (341)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 252
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.26 E-value=1.7e-06 Score=89.90 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=63.8
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE----EEeech--
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF----INLDIS-- 234 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~----i~i~~s-- 234 (341)
+.-|++++|++++++.+..++.. ..+++|+||||||||++++++|+.++... +.+..+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~ 77 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED 77 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC
Confidence 46788999999999998887653 24899999999999999999999997542 222222
Q ss_pred ----hhhhhhcCCchHHHHHHHHHHHhcCCe
Q psy15087 235 ----TLTDKLYGESPKLATAIFSLAEKIQPC 261 (341)
Q Consensus 235 ----~l~~~~~g~~~~~i~~lf~~a~~~~p~ 261 (341)
-+...+.+...+.++..|..|++..|+
T Consensus 78 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 78 PNMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred CchHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 222335577788888888888776664
No 253
>KOG0482|consensus
Probab=98.26 E-value=2.6e-07 Score=91.42 Aligned_cols=162 Identities=23% Similarity=0.283 Sum_probs=97.2
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCC-CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee---------chh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGL-LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD---------IST 235 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~-~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~---------~s~ 235 (341)
+|.|.+++|+.|.-.+....... ...|+ ++..-+|+|.|.||+.||.|.+.+.+-.....+... ++-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~---~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS---PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC---CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 48899999999877765432211 11121 345568999999999999999999876644443321 111
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
+....-|+.. .-...+..| ..+|.+|||+|++........++.++ ++++-..-.|+...-+.++.|++|+|+..
T Consensus 420 mkDpvTgEM~-LEGGALVLA---D~GICCIDEfDKM~e~DRtAIHEVME--QQTISIaKAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 420 MKDPVTGEMV-LEGGALVLA---DGGICCIDEFDKMDESDRTAIHEVME--QQTISIAKAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred hcCCCCCeeE-eccceEEEc---cCceEeehhhhhhhhhhhHHHHHHHH--hhhhhhhhhccccchhhhHHhhhhcCccc
Confidence 1111111110 001111222 33899999999996554444455544 23333334455555566788999998643
Q ss_pred -------------CCcHHHHccCCceEE-ecCCCc
Q psy15087 316 -------------DIDPAIARRMPKKYH-IKLPLL 336 (341)
Q Consensus 316 -------------~ld~al~rRf~~~i~-i~lP~~ 336 (341)
.|+.|+++||+..+. .+-||.
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdr 528 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDR 528 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcc
Confidence 478999999997553 344443
No 254
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.1e-06 Score=77.28 Aligned_cols=134 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE--------Eeechhhhhh-
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI--------NLDISTLTDK- 239 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i--------~i~~s~l~~~- 239 (341)
++..+++.|..++.. -+.+..+||+|| +||+.+|+++|..+.+.-- .-+|..+...
T Consensus 6 ~q~~~~~~L~~~~~~-------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~ 70 (290)
T PRK07276 6 KQPKVFQRFQTILEQ-------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGE 70 (290)
T ss_pred HHHHHHHHHHHHHHc-------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 345566666666544 266788999996 6899999999987743210 0011111100
Q ss_pred -----hc---CC--chHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCE
Q psy15087 240 -----LY---GE--SPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDI 305 (341)
Q Consensus 240 -----~~---g~--~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~v 305 (341)
++ |. ....++.+...+.. ....|++||++|.+. ....+.|+..++. ++.++
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLEE----Pp~~t 135 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH-----------VNAANSLLKVIEE----PQSEI 135 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC-----------HHHHHHHHHHhcC----CCCCe
Confidence 11 11 12344554443332 234799999999983 2235677777664 44568
Q ss_pred EEEEEeCCCCCCcHHHHccCCceEEecC
Q psy15087 306 IIMGATNRPDDIDPAIARRMPKKYHIKL 333 (341)
Q Consensus 306 iVIatTN~~~~ld~al~rRf~~~i~i~l 333 (341)
++|.+|+.++.+-|.+++|+.. +.|+.
T Consensus 136 ~~iL~t~~~~~lLpTI~SRcq~-i~f~~ 162 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKSRTQI-FHFPK 162 (290)
T ss_pred EEEEEECChhhCchHHHHccee-eeCCC
Confidence 8888888899999999999854 66654
No 255
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.24 E-value=2.3e-06 Score=80.50 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=68.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC-c--EEEeechhhhhhhcCCchHHHHHHHHHH-----------HhcCCeEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV-S--FINLDISTLTDKLYGESPKLATAIFSLA-----------EKIQPCII 263 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~-~--~i~i~~s~l~~~~~g~~~~~i~~lf~~a-----------~~~~p~II 263 (341)
....+|||+||+|||||++++.+-..+.. . ...++++.... ...++.+.+.. ...+..|+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 34568999999999999999988766642 2 22344432211 11111111100 11233699
Q ss_pred EEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC------CCCEEEEEEeCCCC---CCcHHHHccCCceEEecCC
Q psy15087 264 FIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK------NIDIIIMGATNRPD---DIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 264 ~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~------~~~viVIatTN~~~---~ld~al~rRf~~~i~i~lP 334 (341)
||||++.-..+.-+ . ....+++.+++.. .|..... -.++.++||+|.+. .+++.++|.|. .+.++.|
T Consensus 105 fiDDlN~p~~d~yg-t-q~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p 180 (272)
T PF12775_consen 105 FIDDLNMPQPDKYG-T-QPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYP 180 (272)
T ss_dssp EEETTT-S---TTS----HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE----
T ss_pred EecccCCCCCCCCC-C-cCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecCC
Confidence 99999885444322 1 1223455555542 1222211 12578889988643 47788888875 4788888
Q ss_pred CcCC
Q psy15087 335 LLSS 338 (341)
Q Consensus 335 ~~e~ 338 (341)
+.++
T Consensus 181 ~~~s 184 (272)
T PF12775_consen 181 SDES 184 (272)
T ss_dssp TCCH
T ss_pred ChHH
Confidence 8764
No 256
>PF05729 NACHT: NACHT domain
Probab=98.19 E-value=1e-05 Score=68.73 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=43.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcC--------Cc-EEEeechhhhhh------------hcCCchHHHHH-HHHHHHhcC
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEAN--------VS-FINLDISTLTDK------------LYGESPKLATA-IFSLAEKIQ 259 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~--------~~-~i~i~~s~l~~~------------~~g~~~~~i~~-lf~~a~~~~ 259 (341)
-++++|+||+|||++++.++..+. .+ ++.+.+...... ........... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999987761 11 223333322211 11111111122 223344556
Q ss_pred CeEEEEcccchhhhc
Q psy15087 260 PCIIFIDEIDSLLRS 274 (341)
Q Consensus 260 p~II~IDEiD~l~~~ 274 (341)
..+|+||.+|.+...
T Consensus 82 ~~llilDglDE~~~~ 96 (166)
T PF05729_consen 82 RVLLILDGLDELEEQ 96 (166)
T ss_pred ceEEEEechHhcccc
Confidence 689999999999654
No 257
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1e-05 Score=77.02 Aligned_cols=117 Identities=18% Similarity=0.132 Sum_probs=75.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------EEEeechhhhhhhcCC--chHHHHHHHHHHHh-----
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS-------------FINLDISTLTDKLYGE--SPKLATAIFSLAEK----- 257 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~-------------~i~i~~s~l~~~~~g~--~~~~i~~lf~~a~~----- 257 (341)
+-+...||+|+.|.||+.+|+.+++.+.+. ++.++. .|. ....++.+......
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~-------~g~~i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI-------FDKDLSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc-------CCCcCCHHHHHHHHHHhccCCccc
Confidence 456778999999999999999999987331 111210 011 11233444433321
Q ss_pred cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 258 IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
....|++||++|.+. ....+.|+..++. ++..+++|..|+.++.+-+.+++|+.. +.+..|+.+
T Consensus 89 ~~~KvvII~~~e~m~-----------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~ 152 (299)
T PRK07132 89 SQKKILIIKNIEKTS-----------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQ 152 (299)
T ss_pred CCceEEEEecccccC-----------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCeEE-EECCCCCHH
Confidence 255799999998873 2234567776664 334566776777778999999999754 777776543
No 258
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.18 E-value=7.5e-06 Score=67.81 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=41.7
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.|.||.-+++.+..++...+..+. -..|--+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 489999999999999887665431 1334456699999999999999999985
No 259
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=2e-05 Score=75.56 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=60.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcE-EEeechhhhhh-------hcCCchHHHHHHHHHHHhcCCeEEEEcccc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSF-INLDISTLTDK-------LYGESPKLATAIFSLAEKIQPCIIFIDEID 269 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-i~i~~s~l~~~-------~~g~~~~~i~~lf~~a~~~~p~II~IDEiD 269 (341)
.+++|+.|||+-|+|||+|...+-..+..+- ..+....++.. ..|+..- +..+-.... ....||||||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~~-~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP-LPPIADELA-AETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHH-hcCCEEEeeeee
Confidence 5789999999999999999999988875433 33333333322 2244321 111111111 133699999996
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 270 SLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 270 ~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
-- . -....++..|+..|-. .+|++++|+|.+
T Consensus 141 Vt----D----I~DAMiL~rL~~~Lf~------~GV~lvaTSN~~ 171 (367)
T COG1485 141 VT----D----IADAMILGRLLEALFA------RGVVLVATSNTA 171 (367)
T ss_pred ec----C----hHHHHHHHHHHHHHHH------CCcEEEEeCCCC
Confidence 52 0 1233345555555431 369999999983
No 260
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.15 E-value=5.9e-06 Score=84.21 Aligned_cols=62 Identities=27% Similarity=0.367 Sum_probs=46.1
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.+.+.+||.-...-.++++..+...+. + ..+.+-+||+||||||||++++.+|++++..+..
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~--------~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFS--------G-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhc--------c-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 466777888887777777776654211 1 1334568899999999999999999999887765
No 261
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.15 E-value=2.8e-05 Score=68.05 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=44.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh------cCC-----------------------ch-----
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL------YGE-----------------------SP----- 245 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~------~g~-----------------------~~----- 245 (341)
+|++||||||||+++..++... |.+++.++..+-.... .|. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886644 5566555542211100 000 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
.....+...+....|.+++||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124444555667899999999998754
No 262
>KOG1514|consensus
Probab=98.14 E-value=1.9e-05 Score=81.27 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=79.5
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhh
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTL 236 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l 236 (341)
+.+.+....+|...+...+.. -.....+++.|-||||||.++..+..++ .++++.+++-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~---------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD---------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC---------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 455555555555555443221 0223478999999999999999998765 456788887655
Q ss_pred hhh----------hcCCchH------HHHHHHHHH-HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC
Q psy15087 237 TDK----------LYGESPK------LATAIFSLA-EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT 299 (341)
Q Consensus 237 ~~~----------~~g~~~~------~i~~lf~~a-~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 299 (341)
.+. +.|+... .+..-|... .+..++||+|||+|.|.... +.++..+.....
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt 536 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPT 536 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCc
Confidence 432 2233221 122222211 23456899999999997542 233334444555
Q ss_pred CCCCCEEEEEEeCCCCCC
Q psy15087 300 DKNIDIIIMGATNRPDDI 317 (341)
Q Consensus 300 ~~~~~viVIatTN~~~~l 317 (341)
.++.+++||+-+|..+..
T Consensus 537 ~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLP 554 (767)
T ss_pred CCCCceEEEEecccccCH
Confidence 566789999999986543
No 263
>KOG0481|consensus
Probab=98.13 E-value=1.3e-06 Score=86.65 Aligned_cols=153 Identities=25% Similarity=0.326 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHhhchhhc--hhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee----chhhhh-
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKN--RNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD----ISTLTD- 238 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~--~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~----~s~l~~- 238 (341)
.|.|.+++|+.+.-.+...-+. |+-.. .+..-+|||.|.|||.||.|.|-+-.....-++.-. +..+..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~----lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVT----LRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcce----eccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceee
Confidence 3789999999887665432111 11111 234457999999999999999999876654444321 111111
Q ss_pred --------hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 239 --------KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 239 --------~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
.|+-+. ..+..| ..+|++|||+|++-....-..+++++ ++++-..-.|+...-+.++-|++|
T Consensus 408 V~RD~~tReFylEG-----GAMVLA---DgGVvCIDEFDKMre~DRVAIHEAME--QQTISIAKAGITT~LNSRtSVLAA 477 (729)
T KOG0481|consen 408 VIRDPSTREFYLEG-----GAMVLA---DGGVVCIDEFDKMREDDRVAIHEAME--QQTISIAKAGITTTLNSRTSVLAA 477 (729)
T ss_pred EEecCCcceEEEec-----ceEEEe---cCCEEEeehhhccCchhhhHHHHHHH--hhhHHHhhhcceeeecchhhhhhh
Confidence 111111 111122 34899999999985443334455554 344444445665555667889999
Q ss_pred eCCCC-------------CCcHHHHccCCceEEec
Q psy15087 311 TNRPD-------------DIDPAIARRMPKKYHIK 332 (341)
Q Consensus 311 TN~~~-------------~ld~al~rRf~~~i~i~ 332 (341)
+|.+- ++.+.+++||+..+.+.
T Consensus 478 ANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVK 512 (729)
T KOG0481|consen 478 ANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVK 512 (729)
T ss_pred cCCccccccccCCcccccchhhhHhhhccEEEEEe
Confidence 99742 23489999999976654
No 264
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.13 E-value=1e-05 Score=73.61 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=42.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh--hhh-h---h----cCCchHHHHHHHHHHH--hcCCeEEEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST--LTD-K---L----YGESPKLATAIFSLAE--KIQPCIIFI 265 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~--l~~-~---~----~g~~~~~i~~lf~~a~--~~~p~II~I 265 (341)
+.|..+||||+||+|||++|+.++.. ..++..+.+. +.. . . .......+...+..+. ...+.+|||
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 44677999999999999999999732 2233333321 000 0 0 0111122222223222 234679999
Q ss_pred cccchhhh
Q psy15087 266 DEIDSLLR 273 (341)
Q Consensus 266 DEiD~l~~ 273 (341)
|+++.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99999855
No 265
>PRK08118 topology modulation protein; Reviewed
Probab=98.08 E-value=8.9e-06 Score=70.92 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=30.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
.++++||||+|||++|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999888743
No 266
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.07 E-value=3.4e-06 Score=68.67 Aligned_cols=31 Identities=39% Similarity=0.714 Sum_probs=28.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
+++.||||||||++|+.+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988887765
No 267
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=1.2e-05 Score=73.22 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=23.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.+++|+|+||||||+||.++|..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.06 E-value=4.2e-05 Score=69.47 Aligned_cols=38 Identities=37% Similarity=0.523 Sum_probs=30.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeech
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIS 234 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s 234 (341)
+....-++++||||+|||++|..+|.+. +...+.++..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4566678999999999999999998644 6666776665
No 269
>KOG0479|consensus
Probab=98.05 E-value=2.3e-06 Score=86.06 Aligned_cols=155 Identities=20% Similarity=0.274 Sum_probs=87.1
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE---------EEeechhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF---------INLDISTL 236 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~---------i~i~~s~l 236 (341)
.|.|.+.+|+.|.-.+...... .+.+..-++.--++||.|.|.+.||.|.|.+.+.....+ +-+.+.-.
T Consensus 302 SI~GH~~vKkAillLLlGGvEk--~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee--ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 3789999999987665432211 111111134455799999999999999999976542221 11111111
Q ss_pred hhhhcCCchHHH-HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 237 TDKLYGESPKLA-TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 237 ~~~~~g~~~~~i-~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
..+--| ++++ ...+..|. .+|+||||||++.....-..++.+++ +.....-.|+...-+.++-|++++|+..
T Consensus 380 tD~eTG--ERRLEAGAMVLAD---RGVVCIDEFDKMsDiDRvAIHEVMEQ--qtVTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 380 TDQETG--ERRLEAGAMVLAD---RGVVCIDEFDKMSDIDRVAIHEVMEQ--QTVTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred eccccc--hhhhhcCceEEcc---CceEEehhcccccchhHHHHHHHHhc--ceEEeEeccchhhhccceeeeeecCccc
Confidence 111112 2221 12222333 38999999999853222222222221 1111112244444456799999999743
Q ss_pred -------------CCcHHHHccCCceE
Q psy15087 316 -------------DIDPAIARRMPKKY 329 (341)
Q Consensus 316 -------------~ld~al~rRf~~~i 329 (341)
-|+..+++||+..+
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLSRFDLlF 479 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLSRFDLLF 479 (818)
T ss_pred cccCCCCChhhccCCcHHHHhhhcEEE
Confidence 36789999999844
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.01 E-value=7.2e-06 Score=70.75 Aligned_cols=35 Identities=34% Similarity=0.465 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++..++|+|+||||||++|+.+|+.++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999988654
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.99 E-value=1e-05 Score=82.44 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=47.8
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEeec
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-NVSFINLDI 233 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i~~ 233 (341)
..|+|+.|++++++.+.+.+..... ++-....-++|.||||+|||+||++||..+ ..+++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4688999999999999887643211 112445678999999999999999999877 345555544
No 272
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.99 E-value=1e-05 Score=72.15 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=56.3
Q ss_pred EEEECCCCCCHHHHHHHH-HHHc---CCcEEEeechhhhhhhc----CCchH-------------HHHHHHHHHHhcCCe
Q psy15087 203 ILLYGPPGCGKTMIAKAT-AKEA---NVSFINLDISTLTDKLY----GESPK-------------LATAIFSLAEKIQPC 261 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkal-A~~l---~~~~i~i~~s~l~~~~~----g~~~~-------------~i~~lf~~a~~~~p~ 261 (341)
.+++|.||+|||..|-.. .... |.+++. +...+.-... +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987655 3332 555554 4332221111 10000 001111111111468
Q ss_pred EEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEec
Q psy15087 262 IIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIK 332 (341)
Q Consensus 262 II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~ 332 (341)
+|+|||++.+.+.+....... . ..+..+... ...+.-|+.+|..+..+|+.+++.....+++.
T Consensus 82 liviDEa~~~~~~r~~~~~~~-~----~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKV-P----EIIEFLAQH---RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T---------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCccccccc-h----HHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999988876522111 1 122222222 22457788899999999999988766655544
No 273
>KOG1942|consensus
Probab=97.99 E-value=1.4e-05 Score=74.88 Aligned_cols=71 Identities=27% Similarity=0.365 Sum_probs=52.7
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechhhhhhhcCC
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--VSFINLDISTLTDKLYGE 243 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~l~~~~~g~ 243 (341)
.++|++++.+.---.+... +.. ....+.|||.||||||||.||-++++++| .||..+.++++.+.-+..
T Consensus 39 g~vGQ~~AReAagiivdli-k~K--------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK 109 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLI-KSK--------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK 109 (456)
T ss_pred ccccchhhhhhhhHHHHHH-Hhh--------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhH
Confidence 4789999887654444331 111 14568899999999999999999999995 689888888887655444
Q ss_pred ch
Q psy15087 244 SP 245 (341)
Q Consensus 244 ~~ 245 (341)
.+
T Consensus 110 TE 111 (456)
T KOG1942|consen 110 TE 111 (456)
T ss_pred HH
Confidence 43
No 274
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.96 E-value=7.6e-05 Score=71.68 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=51.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh----------------hcCCchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK----------------LYGESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~----------------~~g~~~~~i~~lf~~a~~ 257 (341)
+.+.+.++++||||||||+||-.++... +.+.+.++....... .....+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 4566679999999999999988875543 566666665432221 011223334444444556
Q ss_pred cCCeEEEEcccchhhhc
Q psy15087 258 IQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~~ 274 (341)
..+.+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 67899999999998753
No 275
>KOG2227|consensus
Probab=97.96 E-value=5.2e-05 Score=75.00 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=84.2
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----C-CcEEEeechhhhhh-
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----N-VSFINLDISTLTDK- 239 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----~-~~~i~i~~s~l~~~- 239 (341)
.+.|.+.....+++++..++. ...+.++.+.|-||||||.+...+-... . ...++++|.++...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 478999999999888877644 2567789999999999999988775443 2 24477887754321
Q ss_pred ---------h----cCC-chHHHHHHH-HHHHhc-CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q psy15087 240 ---------L----YGE-SPKLATAIF-SLAEKI-QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNI 303 (341)
Q Consensus 240 ---------~----~g~-~~~~i~~lf-~~a~~~-~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~ 303 (341)
+ .+. .+......| ...... .+-++++||+|.|....+ ..+..+..+..-+..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lFewp~lp~s 288 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLFEWPKLPNS 288 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeehhcccCCcc
Confidence 1 111 111112222 222222 367999999999974332 222233333444456
Q ss_pred CEEEEEEeCCCCCCcHHHH
Q psy15087 304 DIIIMGATNRPDDIDPAIA 322 (341)
Q Consensus 304 ~viVIatTN~~~~ld~al~ 322 (341)
++++||-+|..+.-|-.|-
T Consensus 289 r~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLP 307 (529)
T ss_pred eeeeeeehhhhhHHHHHhh
Confidence 7999999998765444333
No 276
>PRK07261 topology modulation protein; Provisional
Probab=97.95 E-value=2.2e-05 Score=68.60 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=29.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
-++++|+||+|||+||+.++..++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3789999999999999999999999988876443
No 277
>KOG2383|consensus
Probab=97.94 E-value=4e-05 Score=74.46 Aligned_cols=28 Identities=46% Similarity=0.861 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-.+|+|++|||.-|||||+|...+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3579999999999999999999887555
No 278
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.93 E-value=1.8e-05 Score=68.71 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=37.7
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc---EEEeechhh
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS---FINLDISTL 236 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~---~i~i~~s~l 236 (341)
++|.++..++|...+... . ...++.++++|++|+|||++++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~~-~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAA-Q----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGT-S----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHH-H----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 578899999998887411 1 2456789999999999999999997766333 677666554
No 279
>PHA02624 large T antigen; Provisional
Probab=97.92 E-value=7.2e-05 Score=76.71 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCC-
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS- 276 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~- 276 (341)
...+.++|+||||||||+++.+|++.++...++++++.-... ..+.-+ ....+++||++-.-.-...
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~----------FwL~pl--~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN----------FELGCA--IDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH----------HHhhhh--hhceEEEeeecccccccccc
Confidence 445689999999999999999999999777777875542221 111111 1226888898854321100
Q ss_pred -CCchHHHHHHHHHHHHHhcCC-CC----CCCCC-----EEEEEEeCCCCCCcHHHHccCCceEEec
Q psy15087 277 -SSDHEATAQLKSIFLSKWDGL-TT----DKNID-----IIIMGATNRPDDIDPAIARRMPKKYHIK 332 (341)
Q Consensus 277 -~~~~~~~~~i~~~ll~~ld~~-~~----~~~~~-----viVIatTN~~~~ld~al~rRf~~~i~i~ 332 (341)
+.+....+ +.-|-+.|||- .. ..... --.|.|||. ..|+..+.-||...+.+.
T Consensus 497 Lp~G~~~dN--l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~ 560 (647)
T PHA02624 497 LPSGQGMNN--LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFK 560 (647)
T ss_pred CCcccccch--hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhcccc
Confidence 00000110 13345556664 10 00000 124667775 478888888998877654
No 280
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.92 E-value=3.3e-05 Score=72.49 Aligned_cols=72 Identities=29% Similarity=0.557 Sum_probs=49.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHH------HHcCCcEEEeechhhhhh-----hcCCchHHHHHHH--------HHHHhc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATA------KEANVSFINLDISTLTDK-----LYGESPKLATAIF--------SLAEKI 258 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA------~~l~~~~i~i~~s~l~~~-----~~g~~~~~i~~lf--------~~a~~~ 258 (341)
+....+||.||.|.||+.||+.|- +++..+|+.++|..+... .+|. ++..| ...+..
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gllrsa 281 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGLLRSA 281 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhhhccC
Confidence 445569999999999999999984 345779999999887442 2222 11222 122334
Q ss_pred CCeEEEEcccchhhh
Q psy15087 259 QPCIIFIDEIDSLLR 273 (341)
Q Consensus 259 ~p~II~IDEiD~l~~ 273 (341)
..+++|+|||..+..
T Consensus 282 dggmlfldeigelga 296 (531)
T COG4650 282 DGGMLFLDEIGELGA 296 (531)
T ss_pred CCceEehHhhhhcCc
Confidence 558999999998853
No 281
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.90 E-value=4.2e-05 Score=63.88 Aligned_cols=35 Identities=34% Similarity=0.640 Sum_probs=27.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
|+++||||||||++|+.++..++..+ ++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHHHHH
Confidence 78999999999999999999999444 444444443
No 282
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.87 E-value=2.7e-05 Score=79.45 Aligned_cols=127 Identities=24% Similarity=0.360 Sum_probs=78.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCcEEEeechhhhhh-----hcCCchHHH--------HHHHHHHHhcCCeEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA--NVSFINLDISTLTDK-----LYGESPKLA--------TAIFSLAEKIQPCII 263 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l--~~~~i~i~~s~l~~~-----~~g~~~~~i--------~~lf~~a~~~~p~II 263 (341)
....+|+.|.|||||-.+++++.+.. ..||+.++|..+.+. ++|...... +..++.+ ..+.+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A---~gGtl 411 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQA---DGGTL 411 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceec---CCCcc
Confidence 34569999999999999999997666 569999999876543 333322211 2222222 33799
Q ss_pred EEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC------CCCCEEEEEEeCCCC-------CCcHHHHccCCceEE
Q psy15087 264 FIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD------KNIDIIIMGATNRPD-------DIDPAIARRMPKKYH 330 (341)
Q Consensus 264 ~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~------~~~~viVIatTN~~~-------~ld~al~rRf~~~i~ 330 (341)
|+|||..+. ..++..|+..+..-... -.-.|.||+||+++= .+-+.+--|+.- +.
T Consensus 412 FldeIgd~p-----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~-~~ 479 (606)
T COG3284 412 FLDEIGDMP-----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA-FV 479 (606)
T ss_pred HHHHhhhch-----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC-ee
Confidence 999998873 22344455444321100 123488999998831 112222224433 57
Q ss_pred ecCCCcCCCC
Q psy15087 331 IKLPLLSSFS 340 (341)
Q Consensus 331 i~lP~~e~R~ 340 (341)
|.+|...+|+
T Consensus 480 i~lP~lr~R~ 489 (606)
T COG3284 480 ITLPPLRERS 489 (606)
T ss_pred eccCchhccc
Confidence 8999998885
No 283
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.87 E-value=2.1e-05 Score=86.75 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=81.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh--hhc-----CC--ch-HHHHHHHHHHHhcCCeEEEEcc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD--KLY-----GE--SP-KLATAIFSLAEKIQPCIIFIDE 267 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~--~~~-----g~--~~-~~i~~lf~~a~~~~p~II~IDE 267 (341)
...+++||-|.||+|||+|..++|+..|-.++.++.++-.. ..+ ++ .+ .....-|-.|.+ ...-|++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh
Confidence 44677999999999999999999999999999999875322 111 11 11 122333444444 346888999
Q ss_pred cchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC------CCcHHHHccCCceEEecCC
Q psy15087 268 IDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD------DIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 268 iD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~------~ld~al~rRf~~~i~i~lP 334 (341)
+....+..-.+.+.....-...++.++|..-. ...+..|+||-|+-+ .++..++.||.. ++++.-
T Consensus 1620 iNLaSQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V~~d~l 1690 (4600)
T COG5271 1620 INLASQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-VKMDGL 1690 (4600)
T ss_pred hhhhHHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-EEeccc
Confidence 98753221111111111111223333333222 234688999988744 489999999976 555543
No 284
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.87 E-value=8.4e-05 Score=83.01 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=42.7
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV 226 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~ 226 (341)
...+++++|.+...++|...+... ....+-+-++||+|+|||+||+++++.+..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 456788999999999988766421 134556889999999999999999887743
No 285
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.87 E-value=0.00013 Score=70.16 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=50.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH---cCCcEEEeechhhhhh-------------h---cCCchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE---ANVSFINLDISTLTDK-------------L---YGESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~---l~~~~i~i~~s~l~~~-------------~---~g~~~~~i~~lf~~a~~ 257 (341)
+...+-+.++||||||||+||-.++.. .+...+.++...-... + ....+..+..+...++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 455667899999999999999988644 3666777665332111 0 11122333334444556
Q ss_pred cCCeEEEEcccchhhhc
Q psy15087 258 IQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~~ 274 (341)
..+++|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 132 GAVDLIVVDSVAALVPK 148 (325)
T ss_pred cCCCEEEEcchHhhccc
Confidence 67899999999998753
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.86 E-value=5.1e-05 Score=74.48 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=53.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh------hcCC--------chHHHHHHHHHHHhcC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK------LYGE--------SPKLATAIFSLAEKIQ 259 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~------~~g~--------~~~~i~~lf~~a~~~~ 259 (341)
+.+..-++++|+||+|||+|+..+|... +.++++++..+.... ..|. .+..+..++......+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4566779999999999999999998765 346666655432211 1111 1223456666667778
Q ss_pred CeEEEEcccchhhhc
Q psy15087 260 PCIIFIDEIDSLLRS 274 (341)
Q Consensus 260 p~II~IDEiD~l~~~ 274 (341)
|.+|+||++..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999988643
No 287
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.84 E-value=7.8e-05 Score=74.94 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=54.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh------cCC--------chHHHHHHHHHHHhcC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL------YGE--------SPKLATAIFSLAEKIQ 259 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~------~g~--------~~~~i~~lf~~a~~~~ 259 (341)
+.+...+||+|+||+|||+|+..+|... +.++++++..+..... .|. .+..+..++.......
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 4566779999999999999999998765 5677777655432211 111 1123456666667778
Q ss_pred CeEEEEcccchhhhc
Q psy15087 260 PCIIFIDEIDSLLRS 274 (341)
Q Consensus 260 p~II~IDEiD~l~~~ 274 (341)
|.+|+||++..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999988653
No 288
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.83 E-value=0.00029 Score=64.60 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh----hh--cC-----------------------C-
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD----KL--YG-----------------------E- 243 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~----~~--~g-----------------------~- 243 (341)
+.+...+++.||||||||+++..++... +...+.++..+-.. .. +| .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4566789999999999999986664433 45555554332111 00 00 0
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 244 -SPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 244 -~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
....+..+........|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12233444555555678999999998875
No 289
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.81 E-value=0.0001 Score=68.88 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
....-|.|+|++|+|||+||+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 34567899999999999999999977
No 290
>KOG1970|consensus
Probab=97.80 E-value=0.00024 Score=71.63 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=42.2
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.+.+.+++.-...=+.++++.+... ..+. . --..+-+||+||+|||||+.++-++.++|..++.-.
T Consensus 77 ~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~-~--~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 77 KPRTLEELAVHKKKISEVKQWLKQV----AEFT-P--KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CcccHHHHhhhHHhHHHHHHHHHHH----HHhc-c--CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3556666665554455555544310 0111 0 123445889999999999999999999998877643
No 291
>PRK13947 shikimate kinase; Provisional
Probab=97.78 E-value=2.5e-05 Score=67.60 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=29.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+++|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999998765
No 292
>PRK03839 putative kinase; Provisional
Probab=97.76 E-value=2.5e-05 Score=68.42 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=28.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999998765
No 293
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.76 E-value=2.8e-05 Score=65.79 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=28.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+++|+|+||||||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988665
No 294
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.76 E-value=5.1e-05 Score=70.88 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC---cEEEeec-hhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV---SFINLDI-STL 236 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~---~~i~i~~-s~l 236 (341)
..++++++-.....+.+.+.+... ++...++++.||+|||||++++++...+.. .++.+.- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~------------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA------------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC------------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhc------------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 456777765555555555554432 234678999999999999999999988733 3443331 122
Q ss_pred hhhh------c-CCchHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 237 TDKL------Y-GESPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 237 ~~~~------~-g~~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
.-.. . .........++..+.+..|.+|+++|+-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1110 0 11233456777788888999999999954
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.74 E-value=0.00049 Score=62.91 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh--------------hc------------------
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK--------------LY------------------ 241 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~--------------~~------------------ 241 (341)
+..+..++++|+||||||+++..++.+. +.+.+.++..+-... +.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 5667789999999999999999996543 556655554322111 00
Q ss_pred -CCchHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 242 -GESPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 242 -g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
......+..+.......++.+++||++..+.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012334444455555688999999998764
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00032 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
....+.+.|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999877
No 297
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.73 E-value=6.3e-05 Score=74.34 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=40.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH----cCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE----ANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~----l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
+....++++.||+|||||+++.+++.. .| -.++.+.+...... .... .-....+|+|||+..+.
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHh--hhccCCEEEEEcCCCCc
Confidence 456789999999999999999998766 23 22233333321110 1111 22345899999998864
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.73 E-value=7.5e-05 Score=66.82 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=42.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCC----cEEEeech-hhhh---------hhcCCchHHHHHHHHHHHhcCCeEEEEcc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANV----SFINLDIS-TLTD---------KLYGESPKLATAIFSLAEKIQPCIIFIDE 267 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~----~~i~i~~s-~l~~---------~~~g~~~~~i~~lf~~a~~~~p~II~IDE 267 (341)
-+++.||+|||||+++++++..+.. .++.+..+ ++.. ..+|.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887742 22322211 1110 01122222344555666667899999999
Q ss_pred c
Q psy15087 268 I 268 (341)
Q Consensus 268 i 268 (341)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 299
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.72 E-value=0.00033 Score=63.60 Aligned_cols=95 Identities=20% Similarity=0.314 Sum_probs=57.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhhh--------------h------------------
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTDK--------------L------------------ 240 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~~--------------~------------------ 240 (341)
+..+..+|+.||||||||+++..++.+. |-+.+.++..+-... +
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 4667789999999999999999875432 666666554321110 0
Q ss_pred -cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHh
Q psy15087 241 -YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKW 294 (341)
Q Consensus 241 -~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~l 294 (341)
..........+........+.+++||-+..+... .........+..+...+
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~---~~~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY---DDPEELRRFLRALIKFL 147 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS---SSGGGHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc---CCHHHHHHHHHHHHHHH
Confidence 0122334556666667778899999999998222 12223344455555544
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.72 E-value=0.00012 Score=68.66 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=44.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCC----------cEEEee-chhhhhhh-------cCC------chHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANV----------SFINLD-ISTLTDKL-------YGE------SPKLATAIFSLAE 256 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~----------~~i~i~-~s~l~~~~-------~g~------~~~~i~~lf~~a~ 256 (341)
.++++.||+|+|||+++++++..+.. .+..++ ..++...+ ++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999988732 222221 12322111 011 0112335666777
Q ss_pred hcCCeEEEEcccc
Q psy15087 257 KIQPCIIFIDEID 269 (341)
Q Consensus 257 ~~~p~II~IDEiD 269 (341)
...|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 301
>PRK06762 hypothetical protein; Provisional
Probab=97.72 E-value=0.00015 Score=62.47 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=31.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
|.-++|.|+||||||++|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 346889999999999999999999965666666655544
No 302
>PRK10536 hypothetical protein; Provisional
Probab=97.71 E-value=0.00089 Score=62.28 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=32.7
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..+..|-+.......+..++.. ..-+++.||+|||||+||.++|.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~----------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES----------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4445566666666655554421 236899999999999999999884
No 303
>PRK00625 shikimate kinase; Provisional
Probab=97.71 E-value=3.8e-05 Score=67.46 Aligned_cols=31 Identities=42% Similarity=0.573 Sum_probs=29.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+++|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 304
>PHA02774 E1; Provisional
Probab=97.71 E-value=0.00042 Score=70.90 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=27.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEE-ee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFIN-LD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~-i~ 232 (341)
.++++|+||||||||++|.+|++.++...+. ++
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 3589999999999999999999998655544 54
No 305
>PRK13948 shikimate kinase; Provisional
Probab=97.70 E-value=4.6e-05 Score=67.48 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..++..++|.|.+|||||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 467789999999999999999999999999999766
No 306
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.69 E-value=7.5e-05 Score=65.24 Aligned_cols=23 Identities=43% Similarity=0.765 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+++|.|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 307
>PRK14532 adenylate kinase; Provisional
Probab=97.68 E-value=4.2e-05 Score=67.44 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=27.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|.||||||||++|+.+|+.+|++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877765
No 308
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.67 E-value=0.00045 Score=61.95 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..+.++|.||.|+|||++++.++..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3467899999999999999999853
No 309
>PRK04296 thymidine kinase; Provisional
Probab=97.66 E-value=0.00047 Score=61.25 Aligned_cols=70 Identities=23% Similarity=0.190 Sum_probs=40.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec--h--hhhh---hhcCCc-----hHHHHHHHHHH--HhcCCeEEE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA---NVSFINLDI--S--TLTD---KLYGES-----PKLATAIFSLA--EKIQPCIIF 264 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~--s--~l~~---~~~g~~-----~~~i~~lf~~a--~~~~p~II~ 264 (341)
-.+++||||+|||+++..++.++ +..++.++. . .... ...|.. ......++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 445444432 1 1000 011110 01122333332 234568999
Q ss_pred Ecccchh
Q psy15087 265 IDEIDSL 271 (341)
Q Consensus 265 IDEiD~l 271 (341)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 310
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.65 E-value=0.00023 Score=64.80 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechhhhh-h---------------h------c--CC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDISTLTD-K---------------L------Y--GE 243 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~l~~-~---------------~------~--g~ 243 (341)
+....-+.|+||||||||+++..++... +...+.++...-.. . . . ..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4566778999999999999999997543 24556665433100 0 0 0 00
Q ss_pred c---hHHHHHHHHHHHhc-CCeEEEEcccchhhh
Q psy15087 244 S---PKLATAIFSLAEKI-QPCIIFIDEIDSLLR 273 (341)
Q Consensus 244 ~---~~~i~~lf~~a~~~-~p~II~IDEiD~l~~ 273 (341)
. ...+..+....... .+.+|+||-+..+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 0 11222333334445 789999999998754
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.65 E-value=4.9e-05 Score=66.50 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
++++||||||||++|+.+|..+++..+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998766554
No 312
>PRK13949 shikimate kinase; Provisional
Probab=97.64 E-value=5e-05 Score=66.33 Aligned_cols=32 Identities=50% Similarity=0.717 Sum_probs=29.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..++|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999998876
No 313
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.64 E-value=0.00048 Score=63.31 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH---cCCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE---ANVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~---l~~~~i~i~~ 233 (341)
+.+...+|++||||||||+++..++.+ .|-+.+.++.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 567788999999999999999877544 2555555543
No 314
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.63 E-value=0.00034 Score=63.08 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
+....-++++|+||||||+++..+|.+. +.+.+.++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4556679999999999999999998765 456666644
No 315
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00026 Score=69.36 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.....++|+||+|+|||+++..+|..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 446679999999999999999998764
No 316
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.00018 Score=65.52 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=48.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC--------CcEEEeec-hhhhhhhcCC-------------chHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN--------VSFINLDI-STLTDKLYGE-------------SPKLATAIFSLA 255 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~--------~~~i~i~~-s~l~~~~~g~-------------~~~~i~~lf~~a 255 (341)
....+.|+.||||||||++.+-+|..+. ..+..++- +++.....|- ..-.-..+....
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 4456799999999999999999998762 22333332 2332211111 111224556677
Q ss_pred HhcCCeEEEEcccchh
Q psy15087 256 EKIQPCIIFIDEIDSL 271 (341)
Q Consensus 256 ~~~~p~II~IDEiD~l 271 (341)
+.+.|.|+++|||...
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 8899999999999764
No 317
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.62 E-value=0.00016 Score=64.57 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=49.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh----hhcCCchHHHHHHHHHHH---------hcCCeEE
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD----KLYGESPKLATAIFSLAE---------KIQPCII 263 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~----~~~g~~~~~i~~lf~~a~---------~~~p~II 263 (341)
.+.+++.||||||||++++.++..+ +..++.+....-.. ...+.....+..++.... .....+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 3467889999999999999987655 55555554432111 111111112222221111 1234799
Q ss_pred EEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 264 FIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 264 ~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
+|||+..+. ...+..++..... ...+++++|=.+.
T Consensus 98 iVDEasmv~-----------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 98 IVDEASMVD-----------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp EESSGGG-B-----------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EEecccccC-----------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 999998863 1223344443332 2345777776664
No 318
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.62 E-value=0.00034 Score=63.28 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+....-+.|+||||+|||+++..+|...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 4666778999999999999999997653
No 319
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.61 E-value=0.00022 Score=66.86 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=59.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeec-hhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDI-STL 236 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~-s~l 236 (341)
..++++++-.+...+.|.+++. .+...+++.||+|+|||++++++...+. ..++.+.- .++
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~---------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~ 120 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE---------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY 120 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee
Confidence 3467777666666666655542 2334589999999999999999977763 23444421 121
Q ss_pred hhh-----hcC-CchHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 237 TDK-----LYG-ESPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 237 ~~~-----~~g-~~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
.-. .+. +...........+.+..|.+|+++|+..
T Consensus 121 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 121 QIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred cCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 110 011 1112355666777788999999999854
No 320
>PRK06217 hypothetical protein; Validated
Probab=97.60 E-value=6.5e-05 Score=66.19 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=28.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.|+|.|+||||||++|+++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999988765
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=97.60 E-value=0.00061 Score=62.78 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=28.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
+.+...+++.|+||+|||+++-.++.+. |.+.+.++.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 4677789999999999999998886544 666655554
No 322
>PRK14531 adenylate kinase; Provisional
Probab=97.58 E-value=7.8e-05 Score=65.72 Aligned_cols=30 Identities=27% Similarity=0.518 Sum_probs=27.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++++||||||||++++.+|..+|.++++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999999887764
No 323
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.57 E-value=7.2e-05 Score=65.38 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=30.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
.+-++|.|+||+|||++|+.++..++.+++.++...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 346899999999999999999999988777665443
No 324
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.57 E-value=7.5e-05 Score=63.25 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
++|.|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999998877654
No 325
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.57 E-value=6.6e-05 Score=65.55 Aligned_cols=32 Identities=44% Similarity=0.642 Sum_probs=29.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++.|+|++|+|||++.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56999999999999999999999999998775
No 326
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.56 E-value=7.6e-05 Score=62.45 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+.+.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998876
No 327
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.55 E-value=8.2e-05 Score=65.51 Aligned_cols=29 Identities=45% Similarity=0.679 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
|+++||||+|||++|+.+|..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999999877665
No 328
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.54 E-value=0.00019 Score=69.74 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=45.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC----cEEEeec-hhhhh---------hhcCCchHHHHHHHHHHHhcCCeEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANV----SFINLDI-STLTD---------KLYGESPKLATAIFSLAEKIQPCIIF 264 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~----~~i~i~~-s~l~~---------~~~g~~~~~i~~lf~~a~~~~p~II~ 264 (341)
+...+++.||+|+|||++++++...+.. .++.+.- .++.. ...|.........+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3456899999999999999999887642 3333321 12110 01122222345566677778999999
Q ss_pred Ecccc
Q psy15087 265 IDEID 269 (341)
Q Consensus 265 IDEiD 269 (341)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 329
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.54 E-value=0.00032 Score=65.35 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~ 233 (341)
+.+...++|.||||+|||+++..+|... +.++..++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4566779999999999999999886653 555555543
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00013 Score=64.42 Aligned_cols=29 Identities=41% Similarity=0.795 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.|+|.||||+||||+|+.||+.++.+-+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999996655443
No 331
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.54 E-value=0.00021 Score=57.85 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
++++++||+|+|||+++..++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887665
No 332
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.53 E-value=0.00065 Score=59.44 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
.+|+.|+||||||++|..++..++.+.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988777666543
No 333
>KOG3347|consensus
Probab=97.53 E-value=8.7e-05 Score=63.08 Aligned_cols=33 Identities=30% Similarity=0.642 Sum_probs=29.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..++|+.|-||||||+++..+|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 357999999999999999999999999988774
No 334
>PRK14530 adenylate kinase; Provisional
Probab=97.53 E-value=9.9e-05 Score=66.73 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=27.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|.||||+|||++++.+|..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999887754
No 335
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.53 E-value=0.00014 Score=64.37 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=46.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeech-hhhh---hhc----------CCchHHHHHHHHHHHhcCCe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDIS-TLTD---KLY----------GESPKLATAIFSLAEKIQPC 261 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s-~l~~---~~~----------g~~~~~i~~lf~~a~~~~p~ 261 (341)
.....+++.||+|+|||+++++++..+.. ..+.+... ++.. .+. +........+...+.+..|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 45678999999999999999999987632 22222111 1110 000 11122355666777778899
Q ss_pred EEEEcccc
Q psy15087 262 IIFIDEID 269 (341)
Q Consensus 262 II~IDEiD 269 (341)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999984
No 336
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.52 E-value=0.00014 Score=69.40 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=47.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC-----CcEEEeec-hhhhh---h----hcCCchHHHHHHHHHHHhcCCeEEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN-----VSFINLDI-STLTD---K----LYGESPKLATAIFSLAEKIQPCIIFI 265 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~-----~~~i~i~~-s~l~~---~----~~g~~~~~i~~lf~~a~~~~p~II~I 265 (341)
...++++.||+|+|||+++++++..+. ..++.+.- .++.- . ..+........++..+.+..|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 456899999999999999999998762 23333321 12110 0 01111224567778888899999999
Q ss_pred cccc
Q psy15087 266 DEID 269 (341)
Q Consensus 266 DEiD 269 (341)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9984
No 337
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.52 E-value=0.00012 Score=67.27 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=29.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.|..++|.||||+|||++|+.+|+.+++++++++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3455999999999999999999999998887764
No 338
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.52 E-value=8.5e-05 Score=63.86 Aligned_cols=30 Identities=40% Similarity=0.575 Sum_probs=26.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
++|.||||||||++|+.++..++..++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCc
Confidence 478999999999999999999997776543
No 339
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.52 E-value=0.00013 Score=63.84 Aligned_cols=34 Identities=35% Similarity=0.646 Sum_probs=30.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
+..++|.||+|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999988764
No 340
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.50 E-value=0.0018 Score=56.55 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+...+++.||+|||||+|.|++|...
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3566779999999999999999999865
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.49 E-value=0.0019 Score=64.75 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=28.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
.+|..++|+|++|+|||+++..+|..+ +..+..+++
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 357789999999999999999998876 444544444
No 342
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.47 E-value=0.00046 Score=66.11 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=32.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..++..+.|.|+||||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 467788999999999999999999999999999654
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=97.47 E-value=0.0014 Score=63.53 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh-------hh--------hc----CCc-hHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT-------DK--------LY----GES-PKLATAIFSLA 255 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~-------~~--------~~----g~~-~~~i~~lf~~a 255 (341)
.|.-++|.||||+|||+++..+|..+ +..+..+.+..+. .. ++ +.. ...+......+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46679999999999999888888765 4444444433110 00 00 111 12223334444
Q ss_pred HhcCCeEEEEcccchh
Q psy15087 256 EKIQPCIIFIDEIDSL 271 (341)
Q Consensus 256 ~~~~p~II~IDEiD~l 271 (341)
......+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4455679999998775
No 344
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.47 E-value=0.00013 Score=63.13 Aligned_cols=32 Identities=34% Similarity=0.669 Sum_probs=29.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..++|+|+||||||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 45899999999999999999999999998765
No 345
>PRK09354 recA recombinase A; Provisional
Probab=97.47 E-value=0.00084 Score=65.16 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH---cCCcEEEeechhhhhh------------h----cCCchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE---ANVSFINLDISTLTDK------------L----YGESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~---l~~~~i~i~~s~l~~~------------~----~g~~~~~i~~lf~~a~~ 257 (341)
+...+-++++||||||||+||-.++.. .+...++++...-... + ....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 455667899999999999999987543 3666666665432111 0 11122333333344555
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..+.+|+||-+-.+.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999999875
No 346
>PRK13946 shikimate kinase; Provisional
Probab=97.47 E-value=0.00012 Score=64.69 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=31.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
+..|+|.|+||||||++++.+|+.+|.+|+..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999987763
No 347
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00099 Score=65.73 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.|..++|+||+|+|||+++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998765
No 348
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.46 E-value=0.00041 Score=68.05 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=45.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-----CcEEEeech-hhh-----------hhhcCCchHHHHHHHHHHHhcCCeEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN-----VSFINLDIS-TLT-----------DKLYGESPKLATAIFSLAEKIQPCII 263 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~-----~~~i~i~~s-~l~-----------~~~~g~~~~~i~~lf~~a~~~~p~II 263 (341)
..+|++||+|||||++++++...+. ..++.+.-+ ++. ...+|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999987762 334444322 211 01112222234556677778899999
Q ss_pred EEcccch
Q psy15087 264 FIDEIDS 270 (341)
Q Consensus 264 ~IDEiD~ 270 (341)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999854
No 349
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.45 E-value=0.00029 Score=69.18 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.-.+++||||+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3489999999999999999988763
No 350
>PRK06547 hypothetical protein; Provisional
Probab=97.44 E-value=0.00015 Score=63.64 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=30.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+.-|++.|++|||||++|+.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667889999999999999999999998877654
No 351
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.44 E-value=0.00045 Score=67.25 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 352
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.43 E-value=0.00039 Score=67.30 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=48.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEee-chhhhh----h----h-----cCCchHHHHHHHHHHHhcCCe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLD-ISTLTD----K----L-----YGESPKLATAIFSLAEKIQPC 261 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~-~s~l~~----~----~-----~g~~~~~i~~lf~~a~~~~p~ 261 (341)
....+++++|++|||||++++++...... .++.+. ..++.- . . .+...-....+...+.+..|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 45678999999999999999999987742 233221 111110 0 0 111122356778888899999
Q ss_pred EEEEcccch
Q psy15087 262 IIFIDEIDS 270 (341)
Q Consensus 262 II~IDEiD~ 270 (341)
.|++.|+-.
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999853
No 353
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00013 Score=62.84 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
+-+.||||||||++|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999987
No 354
>PF13479 AAA_24: AAA domain
Probab=97.42 E-value=0.00082 Score=60.80 Aligned_cols=68 Identities=31% Similarity=0.364 Sum_probs=39.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc-EEEeechhhh-hhh------cCCchHHHHHHHHHH--HhcCCeEEEEcccc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVS-FINLDISTLT-DKL------YGESPKLATAIFSLA--EKIQPCIIFIDEID 269 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~-~i~i~~s~l~-~~~------~g~~~~~i~~lf~~a--~~~~p~II~IDEiD 269 (341)
+-.++||||||+|||++|..+ +-+ |+.+...... ..+ .-.+-..+.+.+..+ ......+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999888 333 3334333111 011 001222333333332 23455799999888
Q ss_pred hh
Q psy15087 270 SL 271 (341)
Q Consensus 270 ~l 271 (341)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 355
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.41 E-value=0.00059 Score=58.98 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=44.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeechhhh--------hhhcC----Cc-hHHHHHHHHHHHhcCCe
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDISTLT--------DKLYG----ES-PKLATAIFSLAEKIQPC 261 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s~l~--------~~~~g----~~-~~~i~~lf~~a~~~~p~ 261 (341)
+.+...+.|.||+|+|||+|++.++..... --+.++...+. ....+ -+ ....+-.+..+....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 456778999999999999999999976521 01222221111 00010 01 12233445566667899
Q ss_pred EEEEcccch
Q psy15087 262 IIFIDEIDS 270 (341)
Q Consensus 262 II~IDEiD~ 270 (341)
++++||--.
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999644
No 356
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.41 E-value=0.0014 Score=57.24 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=44.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh----------------h-cCCchHHHHHHHHHHHhc-CCeEEE
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK----------------L-YGESPKLATAIFSLAEKI-QPCIIF 264 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~----------------~-~g~~~~~i~~lf~~a~~~-~p~II~ 264 (341)
+|+.|++|+|||++|..++...+.+.+++....-.+. | ..+....+... .... .+.+|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~---l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSA---LKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHH---HHhcCCCCEEE
Confidence 6899999999999999999887767776654322110 0 01111222222 2222 467999
Q ss_pred EcccchhhhcC
Q psy15087 265 IDEIDSLLRSR 275 (341)
Q Consensus 265 IDEiD~l~~~~ 275 (341)
||-+..+....
T Consensus 79 IDclt~~~~n~ 89 (169)
T cd00544 79 IDCLTLWVTNL 89 (169)
T ss_pred EEcHhHHHHHh
Confidence 99998876554
No 357
>PLN02200 adenylate kinase family protein
Probab=97.41 E-value=0.00019 Score=66.11 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+.-+++.||||||||++|+.+|..+|.+.+..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 4456789999999999999999999998765443
No 358
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.41 E-value=0.00016 Score=63.27 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
-+++.||||||||++++.++..+|...+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999998776554
No 359
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.41 E-value=0.00061 Score=58.10 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
+++.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 666666665444
No 360
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.41 E-value=0.00083 Score=61.40 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~ 232 (341)
+.+..-++|.|+||+|||+++..++... +.+++.++
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4666779999999999999998886544 66666555
No 361
>PRK14528 adenylate kinase; Provisional
Probab=97.40 E-value=0.00017 Score=63.80 Aligned_cols=31 Identities=35% Similarity=0.614 Sum_probs=27.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+.+++.||||+|||++|+.+|..++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887765
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.40 E-value=0.0025 Score=59.46 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=27.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.+...++++||||||||+++..+|... |-+.+.++
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567779999999999999999886543 44554444
No 363
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.39 E-value=0.0018 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=18.4
Q ss_pred ceEEEECCCCCCHHH-HHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTM-IAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~-LAkalA~~l 224 (341)
.++++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 679999999999999 555544443
No 364
>KOG1968|consensus
Probab=97.39 E-value=0.00018 Score=77.13 Aligned_cols=124 Identities=21% Similarity=0.267 Sum_probs=76.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh-----cCC--chHHHHHHH---HH--HHhcCCeEEEEcccc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL-----YGE--SPKLATAIF---SL--AEKIQPCIIFIDEID 269 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~-----~g~--~~~~i~~lf---~~--a~~~~p~II~IDEiD 269 (341)
.+|++||||+|||+.+.++|.++|..++..+.+...++. +++ ....+..-+ .. .......||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 369999999999999999999999999999988655432 122 111222222 00 111122499999999
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 270 SLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 270 ~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
-+.+. ..++ ..+ +..++.. ...-+|+++|........-+.|-+..++|.-|+.++.
T Consensus 439 ~~~~~-dRg~---v~~-l~~l~~k---------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i 494 (871)
T KOG1968|consen 439 GMFGE-DRGG---VSK-LSSLCKK---------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELI 494 (871)
T ss_pred cccch-hhhh---HHH-HHHHHHh---------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHH
Confidence 98651 1111 111 2233321 1245788888766655544445556788888876653
No 365
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.39 E-value=0.00048 Score=63.97 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV 226 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~ 226 (341)
..+.-++|.||+|||||+|++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44566999999999999999999988754
No 366
>PRK02496 adk adenylate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=63.47 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=27.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
-+++.||||||||++++.+|..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999999877764
No 367
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.38 E-value=0.0015 Score=58.40 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
++.-++|.||.|+|||++++.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 345689999999999999999983
No 368
>PF14516 AAA_35: AAA-like domain
Probab=97.38 E-value=0.0015 Score=63.18 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
.++..+.+.||..+|||++...+.+.+ |...+.+++..+
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 456789999999999999999986655 677777776654
No 369
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.38 E-value=0.00027 Score=68.03 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEee-chhhhhh------hcCCchHHHHHHHHHHHhcCCeEEEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLD-ISTLTDK------LYGESPKLATAIFSLAEKIQPCIIFI 265 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~-~s~l~~~------~~g~~~~~i~~lf~~a~~~~p~II~I 265 (341)
....++|+.|++|||||+++++++... +..++.+. ..++... +.....-....+...+.+..|..|++
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~Iiv 221 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIV 221 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEE
Confidence 345689999999999999999998875 22333332 2222110 01111223566777888899999999
Q ss_pred cccc
Q psy15087 266 DEID 269 (341)
Q Consensus 266 DEiD 269 (341)
.|+-
T Consensus 222 GEiR 225 (323)
T PRK13833 222 GEVR 225 (323)
T ss_pred eecC
Confidence 9983
No 370
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.37 E-value=0.00047 Score=65.96 Aligned_cols=73 Identities=21% Similarity=0.367 Sum_probs=47.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEee-chhhhh---hh----c-----CCchHHHHHHHHHHHhcCCe
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLD-ISTLTD---KL----Y-----GESPKLATAIFSLAEKIQPC 261 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~-~s~l~~---~~----~-----g~~~~~i~~lf~~a~~~~p~ 261 (341)
+....++++.||+|+|||+++++++..+.. ..+.+. ..++.- .. . +...-....++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 356679999999999999999999987632 222221 111110 00 0 11122346677777888999
Q ss_pred EEEEcccc
Q psy15087 262 IIFIDEID 269 (341)
Q Consensus 262 II~IDEiD 269 (341)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999985
No 371
>PRK04328 hypothetical protein; Provisional
Probab=97.37 E-value=0.0033 Score=58.25 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=26.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH---cCCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE---ANVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~---l~~~~i~i~ 232 (341)
+.+...+|++||||||||+++..++.+ .|-+.+.++
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 456778999999999999999887543 244554444
No 372
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.37 E-value=0.00017 Score=64.86 Aligned_cols=29 Identities=38% Similarity=0.649 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+++.||||+|||++|+.+|..++++.+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877765
No 373
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.37 E-value=0.0024 Score=57.86 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~ 222 (341)
+.++|.||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 374
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0019 Score=63.67 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh-------hhh
Q psy15087 171 EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT-------DKL 240 (341)
Q Consensus 171 ~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~-------~~~ 240 (341)
..+++.+.+.+...+..+..+ ...+..++|.||+|+|||+++..+|..+ +..+..+++.... ..|
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~-----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~y 291 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF-----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 291 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc-----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH
Confidence 455555655554433322111 1345679999999999999999998776 3334333332110 011
Q ss_pred ---------cCCchHHHHHHHHHHHh-cCCeEEEEcccchh
Q psy15087 241 ---------YGESPKLATAIFSLAEK-IQPCIIFIDEIDSL 271 (341)
Q Consensus 241 ---------~g~~~~~i~~lf~~a~~-~~p~II~IDEiD~l 271 (341)
.......+......+.. ....+|+||-..+.
T Consensus 292 ae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 292 VKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 12233344444444433 24589999987663
No 375
>PRK14527 adenylate kinase; Provisional
Probab=97.35 E-value=0.00019 Score=63.61 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+.-++++||||+|||++|+.+|..++...+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3456799999999999999999999998766554
No 376
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.34 E-value=0.0018 Score=65.25 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=52.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh------cCC--------chHHHHHHHHHHHhcC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL------YGE--------SPKLATAIFSLAEKIQ 259 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~------~g~--------~~~~i~~lf~~a~~~~ 259 (341)
+.+..-+|+.|+||+|||+|+..+|... +.++++++..+..... +|. .+..+..+...+....
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 4667779999999999999999997755 3466666654322210 111 0123455566667778
Q ss_pred CeEEEEcccchhhh
Q psy15087 260 PCIIFIDEIDSLLR 273 (341)
Q Consensus 260 p~II~IDEiD~l~~ 273 (341)
|.+|+||.+..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999998754
No 377
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.34 E-value=0.00021 Score=64.51 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
-|+++||||+|||++|+.+|..++++.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999877765
No 378
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.33 E-value=0.0016 Score=64.66 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=44.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
.++++||.+||||++++.+.....-.++.++..+.......- .........+.......||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch
Confidence 799999999999999999988876556666555543322111 111112222222244799999999873
No 379
>PLN02674 adenylate kinase
Probab=97.33 E-value=0.00025 Score=65.59 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=28.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++..++|.||||+||+++++.+|..++.+.+..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 3456799999999999999999999999766554
No 380
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.33 E-value=0.00094 Score=57.59 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=32.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK 239 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~ 239 (341)
+..+.|.|.||+|||+||+++...+ +.+.+.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 3458899999999999999999887 788999988877653
No 381
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.32 E-value=0.00063 Score=62.86 Aligned_cols=34 Identities=38% Similarity=0.607 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
|+|+|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999887 456666655444
No 382
>PRK04040 adenylate kinase; Provisional
Probab=97.30 E-value=0.00026 Score=62.89 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=27.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA--NVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l--~~~~i~i 231 (341)
+.-++++|+||||||++++.+++.+ +..++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 4568999999999999999999999 6666544
No 383
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.29 E-value=0.00041 Score=66.76 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=47.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEee-chhhhh---h---hcCCchHHHHHHHHHHHhcCCeEEEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLD-ISTLTD---K---LYGESPKLATAIFSLAEKIQPCIIFI 265 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~-~s~l~~---~---~~g~~~~~i~~lf~~a~~~~p~II~I 265 (341)
....++++.|++|+|||+++++++... ...++.+. ..++.- . +..........++..+.+..|..|++
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv 225 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV 225 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 346789999999999999999999763 12233221 112210 1 11111224567788888899999999
Q ss_pred cccch
Q psy15087 266 DEIDS 270 (341)
Q Consensus 266 DEiD~ 270 (341)
.|+-.
T Consensus 226 GEiR~ 230 (319)
T PRK13894 226 GEVRG 230 (319)
T ss_pred eccCC
Confidence 99843
No 384
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.28 E-value=0.0011 Score=67.52 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=56.6
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCce-EEEECCCCCCHHHHHHHHHHHcC---CcEEEeech-h
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKG-ILLYGPPGCGKTMIAKATAKEAN---VSFINLDIS-T 235 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~g-vLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s-~ 235 (341)
..++++++-.++..+.+...+. .+.| +++.||+|+|||+++.++...++ ..++.+.-+ +
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~----------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR----------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh----------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 3456666655555555555432 2344 78999999999999998877764 234444221 1
Q ss_pred hhhhh-----cCC-chHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 236 LTDKL-----YGE-SPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 236 l~~~~-----~g~-~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
+.-.. +.. ...........+.+..|.+|++.|+-.
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11110 111 112234555666778999999999854
No 385
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0011 Score=59.49 Aligned_cols=24 Identities=54% Similarity=0.661 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
-++|.|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999983
No 386
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.27 E-value=0.00021 Score=60.84 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=25.4
Q ss_pred EECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 205 LYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 205 L~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
+.||||+|||++|+.||.+++...++ ..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is--~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS--VGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE--HHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec--hHHHHH
Confidence 58999999999999999999866554 444433
No 387
>PRK13764 ATPase; Provisional
Probab=97.27 E-value=0.00055 Score=70.88 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEee-chhhh-----hhhcCCchHHHHHHHHHHHhcCCeEEEEccc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLD-ISTLT-----DKLYGESPKLATAIFSLAEKIQPCIIFIDEI 268 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~-~s~l~-----~~~~g~~~~~i~~lf~~a~~~~p~II~IDEi 268 (341)
....++|++||||||||+++++++..+. ..+..+. ..++. ..+. ............+....|.+|++||+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCC
Confidence 3457899999999999999999998774 2222321 11111 1110 00011122333345678999999998
Q ss_pred ch
Q psy15087 269 DS 270 (341)
Q Consensus 269 D~ 270 (341)
-.
T Consensus 334 Rd 335 (602)
T PRK13764 334 RK 335 (602)
T ss_pred CC
Confidence 54
No 388
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.26 E-value=0.0044 Score=56.13 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=28.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
+.+...+++.|+||+|||+++..++... +.+.+.++.
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4567779999999999999999887543 556555554
No 389
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.26 E-value=0.011 Score=55.76 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=27.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
.+++.++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 456778899999999999999998766 444444443
No 390
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.24 E-value=0.00097 Score=63.06 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=25.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc-CCcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA-NVSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i 231 (341)
.-+++.|+||||||++|+.++..+ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 458899999999999999999998 5555443
No 391
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.21 E-value=0.0013 Score=73.48 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=81.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh--hhcCC----ch---HHHHHHHHHHHhcCCeEEEEcccc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD--KLYGE----SP---KLATAIFSLAEKIQPCIIFIDEID 269 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~--~~~g~----~~---~~i~~lf~~a~~~~p~II~IDEiD 269 (341)
....+|+.||..+|||+....+|.+.|..|+.++..+... .|.|. .. ..-..++..|.+.. .-|++||+.
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccc
Confidence 3456999999999999999999999999999999877654 23322 11 12245555665544 577899997
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHHhcC---CC-------CCCCCCEEEEEEeCCCC------CCcHHHHccCCceEEecC
Q psy15087 270 SLLRSRSSSDHEATAQLKSIFLSKWDG---LT-------TDKNIDIIIMGATNRPD------DIDPAIARRMPKKYHIKL 333 (341)
Q Consensus 270 ~l~~~~~~~~~~~~~~i~~~ll~~ld~---~~-------~~~~~~viVIatTN~~~------~ld~al~rRf~~~i~i~l 333 (341)
.... .++..|-.++|. +. -.+...++++||-|+|. .+..|++.||-...+-++
T Consensus 966 LApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddi 1034 (4600)
T COG5271 966 LAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDI 1034 (4600)
T ss_pred cCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccC
Confidence 6421 122233333332 11 12344688899999876 377899999966444445
Q ss_pred C
Q psy15087 334 P 334 (341)
Q Consensus 334 P 334 (341)
|
T Consensus 1035 p 1035 (4600)
T COG5271 1035 P 1035 (4600)
T ss_pred c
Confidence 5
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.21 E-value=0.00026 Score=57.59 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHc
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l 224 (341)
|+|.|+||||||++|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.21 E-value=0.0035 Score=56.91 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.+...+++.||||||||+++..++.+. +.+.+.++
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 5677889999999999999999876432 44444444
No 394
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.20 E-value=0.00071 Score=65.76 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=47.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeec-hhhhhh--------h----cCCchHHHHHHHHHHHhcCCeE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDI-STLTDK--------L----YGESPKLATAIFSLAEKIQPCI 262 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~-s~l~~~--------~----~g~~~~~i~~lf~~a~~~~p~I 262 (341)
....++|+.||+|||||+++++++..... .++.+.- .++.-. + .+...-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 55678999999999999999999987632 2232211 111100 0 1111223567778888889999
Q ss_pred EEEcccc
Q psy15087 263 IFIDEID 269 (341)
Q Consensus 263 I~IDEiD 269 (341)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999974
No 395
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.20 E-value=0.0031 Score=67.10 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=48.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHH---HcCCcEEEeechhhhhh------------h----cCCchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAK---EANVSFINLDISTLTDK------------L----YGESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~---~l~~~~i~i~~s~l~~~------------~----~g~~~~~i~~lf~~a~~ 257 (341)
+...+.++++||||||||+|+..++. ..+...+.++..+-... + ....+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 45667799999999999999976643 33556666655432220 0 01112233333344455
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..+.+|+||-+..+.+
T Consensus 137 ~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 137 GALDIVVIDSVAALVP 152 (790)
T ss_pred CCCeEEEEcchhhhcc
Confidence 5789999999999885
No 396
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.0019 Score=55.15 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=43.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc--EEEeechhhhh-------h---h---cCCchHHHHHHHHHHHhcCCeE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS--FINLDISTLTD-------K---L---YGESPKLATAIFSLAEKIQPCI 262 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~--~i~i~~s~l~~-------~---~---~g~~~~~i~~lf~~a~~~~p~I 262 (341)
.+...+.|.||+|+|||+|+++++..+... -+.++...+.. . + .... ...+-.+..+-..+|.+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDL 101 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCE
Confidence 556779999999999999999999876321 12222221110 0 0 1111 12222344455557899
Q ss_pred EEEcccch
Q psy15087 263 IFIDEIDS 270 (341)
Q Consensus 263 I~IDEiD~ 270 (341)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999765
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.19 E-value=0.0045 Score=55.28 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA 221 (341)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 398
>PRK04182 cytidylate kinase; Provisional
Probab=97.18 E-value=0.0004 Score=60.18 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=27.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+.|.|+||||||++++.+|..++.+++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 378999999999999999999999988764
No 399
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.17 E-value=0.00011 Score=65.84 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=57.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS 277 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~ 277 (341)
+....++|.|+.|+|||++.+.|+.+ ++.-+... ... .... ..... .-|+.+||++.+...
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~-----~~~-kd~~---~~l~~---~~iveldEl~~~~k~--- 110 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIND-----FDD-KDFL---EQLQG---KWIVELDELDGLSKK--- 110 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHH----hccCcccc-----CCC-cHHH---HHHHH---hHheeHHHHhhcchh---
Confidence 44456889999999999999999655 21111111 011 1111 11111 168999999987421
Q ss_pred CchHHHHHHHHHHHHHhcCCCC-------CCCCCEEEEEEeCCCCCC-cHHHHccCC
Q psy15087 278 SDHEATAQLKSIFLSKWDGLTT-------DKNIDIIIMGATNRPDDI-DPAIARRMP 326 (341)
Q Consensus 278 ~~~~~~~~i~~~ll~~ld~~~~-------~~~~~viVIatTN~~~~l-d~al~rRf~ 326 (341)
..+.+.+.+-...+.... ..+...++|||||..+-| |+.=-|||-
T Consensus 111 ----~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~ 163 (198)
T PF05272_consen 111 ----DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFW 163 (198)
T ss_pred ----hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEE
Confidence 123333333222222211 112347889999997744 444556763
No 400
>PRK06696 uridine kinase; Validated
Probab=97.17 E-value=0.00094 Score=60.73 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
..+.-|.+.|++|||||++|+.|+..+ |.+++.++..++
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 345678899999999999999999998 667776654443
No 401
>PRK10436 hypothetical protein; Provisional
Probab=97.17 E-value=0.0013 Score=66.36 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=58.6
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC---cEEEeech-hh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV---SFINLDIS-TL 236 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~---~~i~i~~s-~l 236 (341)
..++++++-.+...+.+.+.+. .+...+|+.||+|+|||+++.++...++. .++.+.-+ +.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 3467777666666666666542 23345899999999999998887766642 34443211 11
Q ss_pred hhhh-----cC-CchHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 237 TDKL-----YG-ESPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 237 ~~~~-----~g-~~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
.-.. ++ ............+.+..|.+|++.|+-.
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1110 11 1112345666777778999999999854
No 402
>PRK01184 hypothetical protein; Provisional
Probab=97.17 E-value=0.0004 Score=60.95 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=25.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
-++|.||||||||++++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788999888775
No 403
>PF13245 AAA_19: Part of AAA domain
Probab=97.16 E-value=0.00071 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=16.8
Q ss_pred eEEEECCCCCCHH-HHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKT-MIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT-~LAkalA~~l 224 (341)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999 5555555554
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.16 E-value=0.013 Score=56.44 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=26.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
++.-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 46678999999999999999998876 334444443
No 405
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.16 E-value=0.001 Score=58.43 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=42.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-------------CCcEEEeechhhh----hhh---cCC---------------
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA-------------NVSFINLDISTLT----DKL---YGE--------------- 243 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l-------------~~~~i~i~~s~l~----~~~---~g~--------------- 243 (341)
...-+++.||||+|||+++..+|..+ +.+++.++...-. ..+ .+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 44558999999999999999987654 1244555432111 000 000
Q ss_pred --------------chHHHHHHHHHHHh-cCCeEEEEcccchhhhc
Q psy15087 244 --------------SPKLATAIFSLAEK-IQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 244 --------------~~~~i~~lf~~a~~-~~p~II~IDEiD~l~~~ 274 (341)
....+..+...+.. ..+.+|+||.+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12234455566666 57899999999999865
No 406
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.15 E-value=0.0076 Score=55.64 Aligned_cols=120 Identities=17% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCc--EEEeechhhhhhhc--------CC---c---hHHH----HHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVS--FINLDISTLTDKLY--------GE---S---PKLA----TAIFSLAE 256 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~--~i~i~~s~l~~~~~--------g~---~---~~~i----~~lf~~a~ 256 (341)
...+..+++.|++|||||++++.+...+... .+.+-.+.....+. .. . +..+ ..+.....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 3566789999999999999999997766432 22222222111111 00 0 1111 11111111
Q ss_pred ---h---cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEE
Q psy15087 257 ---K---IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYH 330 (341)
Q Consensus 257 ---~---~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~ 330 (341)
. ..+.+|++|++..- ..-.+.+..++.. ....++.+|..+...-.+++.++.-.+..+.
T Consensus 90 k~~~~k~~~~~LiIlDD~~~~---------~~k~~~l~~~~~~------gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~ 154 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGDK---------KLKSKILRQFFNN------GRHYNISIIFLSQSYFHLPPNIRSNIDYFII 154 (241)
T ss_pred hhcccCCCCCeEEEEeCCCCc---------hhhhHHHHHHHhc------ccccceEEEEEeeecccCCHHHhhcceEEEE
Confidence 1 23579999997431 0112223344331 1234588888888888999998776665443
Q ss_pred e
Q psy15087 331 I 331 (341)
Q Consensus 331 i 331 (341)
+
T Consensus 155 ~ 155 (241)
T PF04665_consen 155 F 155 (241)
T ss_pred e
Confidence 3
No 407
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0039 Score=57.45 Aligned_cols=123 Identities=12% Similarity=-0.013 Sum_probs=78.7
Q ss_pred CCCceEEEECCCC-CCHHHHHHHHHHHcCCc---------EEEeechhhhhhh-cCCchHHHHHHHHHHH----hcCCeE
Q psy15087 198 KPPKGILLYGPPG-CGKTMIAKATAKEANVS---------FINLDISTLTDKL-YGESPKLATAIFSLAE----KIQPCI 262 (341)
Q Consensus 198 ~~~~gvLL~GPpG-tGKT~LAkalA~~l~~~---------~i~i~~s~l~~~~-~g~~~~~i~~lf~~a~----~~~p~I 262 (341)
+-....||.|..+ +||..++.-++..+.+. ++.+....-..+. -.-....++.+...+. .....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 4456799999998 99999999888777332 2222211000000 0001233454444332 234579
Q ss_pred EEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 263 IFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 263 I~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
++|+++|.+.. ...+.||..++. ++.++++|..|+.++.+.+.+++|+.. +.++.|..
T Consensus 93 iII~~ae~mt~-----------~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRCq~-i~~~~p~~ 150 (263)
T PRK06581 93 AIIYSAELMNL-----------NAANSCLKILED----APKNSYIFLITSRAASIISTIRSRCFK-INVRSSIL 150 (263)
T ss_pred EEEechHHhCH-----------HHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhceEE-EeCCCCCH
Confidence 99999999842 235667776654 445678888888899999999999754 88887765
No 408
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.13 E-value=0.00047 Score=59.31 Aligned_cols=29 Identities=41% Similarity=0.718 Sum_probs=26.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
|.+.|++|||||++|+.+|+.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999998765
No 409
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.13 E-value=0.0054 Score=62.41 Aligned_cols=77 Identities=25% Similarity=0.286 Sum_probs=54.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh------cC----------------------Cch
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL------YG----------------------ESP 245 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~------~g----------------------~~~ 245 (341)
+.+...+|+.||||+|||+|+-.++... |-+.++++..+-.... +| ..+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 5667789999999999999999997654 4455555543322110 01 114
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
..+..+........|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 4566777778888899999999998754
No 410
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0025 Score=55.41 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+...+.|.||+|+|||+|++.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3566779999999999999999999876
No 411
>PRK13695 putative NTPase; Provisional
Probab=97.13 E-value=0.0023 Score=55.69 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++|.|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987765
No 412
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.12 E-value=0.0022 Score=61.54 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDIST 235 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~ 235 (341)
+....-++++||||||||.++-.+|... +...++++..+
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4566678999999999999999998653 23566665543
No 413
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.12 E-value=0.0015 Score=58.22 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=31.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEeechhhhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA-NVSFINLDISTLTD 238 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i~~s~l~~ 238 (341)
..|.-+++.|+||+|||+++..+...+ +..++.++..++..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 567789999999999999999999988 77888888777654
No 414
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.11 E-value=0.00063 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHc
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 415
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.11 E-value=0.0063 Score=53.69 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q psy15087 203 ILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA 221 (341)
++|.||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 416
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0015 Score=65.56 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=59.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCce-EEEECCCCCCHHHHHHHHHHHcCCcEEEeech----h
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKG-ILLYGPPGCGKTMIAKATAKEANVSFINLDIS----T 235 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~g-vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s----~ 235 (341)
..++++++......+.+...+. .|.| +|+.||.|+|||+...++.++++.+..++-.. +
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~----------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN----------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh----------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 4567777777766666666543 3445 67889999999999999999886554432111 1
Q ss_pred hhhhh-----cCC-chHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 236 LTDKL-----YGE-SPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 236 l~~~~-----~g~-~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
..-.. +.. ..-.....+....+..|.||.+.||-..
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 10000 111 0112344556666789999999999553
No 417
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.006 Score=54.58 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=41.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CC--cEEEeechhh------------hh-hhc----C-CchHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NV--SFINLDISTL------------TD-KLY----G-ESPKLATAIFSLAE 256 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~--~~i~i~~s~l------------~~-~~~----g-~~~~~i~~lf~~a~ 256 (341)
|+-++|+||+|+|||+.+-.+|..+ +. .++..+..-. ++ .++ . +.............
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4678999999999999888887766 33 3344332111 00 011 1 11233444555555
Q ss_pred hcCCeEEEEcccch
Q psy15087 257 KIQPCIIFIDEIDS 270 (341)
Q Consensus 257 ~~~p~II~IDEiD~ 270 (341)
.....+|+||-..+
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 55567999998654
No 418
>PRK14526 adenylate kinase; Provisional
Probab=97.09 E-value=0.00054 Score=62.07 Aligned_cols=29 Identities=41% Similarity=0.684 Sum_probs=25.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.++|.||||||||++++.+|..++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 37899999999999999999999877655
No 419
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0045 Score=56.50 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999977
No 420
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.09 E-value=0.0069 Score=55.56 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy15087 203 ILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~ 223 (341)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999764
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.08 E-value=0.0017 Score=55.05 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=42.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCc--EEEeechhhhhhhcC-Cc-hHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVS--FINLDISTLTDKLYG-ES-PKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~--~i~i~~s~l~~~~~g-~~-~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
+.+...+.+.||+|+|||+|+++++...... -+.++..... .|.. -+ ...-+-.+..+.-.+|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i-~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE-EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3566779999999999999999999876210 0111111000 0000 11 11222334555566899999999754
No 422
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.08 E-value=0.0026 Score=65.57 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
++++..+|+.||+|||||+|.|++|...
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4677889999999999999999999865
No 423
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.08 E-value=0.0011 Score=58.89 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
++.-++|.||+|+|||+|++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998775
No 424
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.07 E-value=0.0032 Score=60.16 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDIST 235 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~ 235 (341)
+....-++++||||||||+++-.+|... +...++++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4556678999999999999999997663 23566666543
No 425
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.07 E-value=0.0017 Score=67.29 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=57.4
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC---cEEEeech-hhh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV---SFINLDIS-TLT 237 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~---~~i~i~~s-~l~ 237 (341)
.++++++-.+...+.+.+++. .+...+|++||+|+|||+++.++...++. .++.+.-+ +..
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~---------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH---------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 456666656555556655442 23345789999999999999888777742 34333221 111
Q ss_pred -----hhhcC-CchHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 238 -----DKLYG-ESPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 238 -----~~~~g-~~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
...+. ............+.+..|.||++.|+-.
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 00011 1112345666777888999999999854
No 426
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.06 E-value=0.00086 Score=58.44 Aligned_cols=39 Identities=36% Similarity=0.364 Sum_probs=29.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC---cEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV---SFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~---~~i~i~~s~l 236 (341)
.++.-++|.|+||||||++|+.++..+.. ..+.++...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 56778999999999999999999998852 2444544433
No 427
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.06 E-value=0.0078 Score=52.56 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3566789999999999999999999875
No 428
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.06 E-value=0.0083 Score=65.09 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+-++++||+|.|||+++...+...+ ++.-++
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 345689999999999999999987766 544433
No 429
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.0025 Score=55.26 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=25.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEeech
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLDIS 234 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s 234 (341)
+++.||||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999998775 5556555544
No 430
>PRK08233 hypothetical protein; Provisional
Probab=97.05 E-value=0.00071 Score=58.80 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-CcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN-VSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~-~~~i~i~ 232 (341)
.-|.+.|+||+|||++|+.++..++ .+++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477889999999999999999985 4444443
No 431
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00051 Score=59.84 Aligned_cols=30 Identities=37% Similarity=0.541 Sum_probs=27.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.+++.|.||+|||++++.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998888765
No 432
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.04 E-value=0.0034 Score=59.33 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----C-CcEEEeech
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA----N-VSFINLDIS 234 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l----~-~~~i~i~~s 234 (341)
..+..++|+||+|+|||+++..+|..+ + ..+..+++.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 345679999999999999999998765 3 444445443
No 433
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.04 E-value=0.0016 Score=54.70 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
.+..-++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455679999999999999999999999864
No 434
>PRK14529 adenylate kinase; Provisional
Probab=97.04 E-value=0.00083 Score=61.37 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.++|.||||+|||++++.+|..++.+.++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 48899999999999999999999987664
No 435
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.04 E-value=0.0022 Score=61.98 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=44.1
Q ss_pred ccc-cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC-CcEEEe
Q psy15087 163 SWK-NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN-VSFINL 231 (341)
Q Consensus 163 ~~~-dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~-~~~i~i 231 (341)
.|+ ++.|+++.+.++.+.+... ..|+-...+-++|.||+|+|||++++.+.+-+. .+++.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~A--------A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSA--------AQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHH--------HhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 355 7999999999998866542 122224556789999999999999999987662 244443
No 436
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.02 E-value=0.003 Score=54.93 Aligned_cols=37 Identities=30% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST 235 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~ 235 (341)
++..+.|.|+||+|||++|+.++..+ +..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45578999999999999999999887 33455555543
No 437
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0021 Score=59.82 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=46.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcE--EEeechh--------h-----------------hhhhcCC--chHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSF--INLDIST--------L-----------------TDKLYGE--SPKL 247 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~--i~i~~s~--------l-----------------~~~~~g~--~~~~ 247 (341)
+.....+-|.|++|||||++++.+........ +..++.+ . ...|..+ ..++
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35667899999999999999999987663211 1111111 1 0011111 1122
Q ss_pred HHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 248 ATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 248 i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
-+-.+..|....|.+|+.||.-+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhc
Confidence 3344556667789999999987753
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.01 E-value=0.0019 Score=63.77 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.+..-+++.||||||||+|++.+++...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4455699999999999999999998753
No 439
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.01 E-value=0.0019 Score=62.29 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=32.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
...+.|.|+||||||+|++.++..++.+++.-.+.+...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~ 200 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVE 200 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHH
Confidence 347999999999999999999999999887655554443
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.01 E-value=0.00071 Score=59.68 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=25.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
..+.|.||+|||||+|++.++...+.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 358899999999999999999988765543
No 441
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.00 E-value=0.0049 Score=59.18 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
+....-+.++||||||||.++..+|-
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 45666789999999999999988764
No 442
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.00 E-value=0.0066 Score=53.39 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+.+..-+.|.||.|||||+|.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 355667899999999999999999643
No 443
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.013 Score=58.36 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..++|.||+|+|||+++..+|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 444
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.98 E-value=0.0062 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
++..++.||.|+|||.++++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999854
No 445
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.98 E-value=0.0036 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+...+.|.||.|+|||+|++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456678999999999999999999865
No 446
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.98 E-value=0.00061 Score=58.60 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=23.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
|.|.|+||||||+|+++++.. |.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 689999999999999999998 8887744443443
No 447
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.97 E-value=0.0012 Score=58.13 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=42.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc--EEEeechhh---hhhh-cCCchHHHHHHHHHHHhcCCeEEEEcccch
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS--FINLDISTL---TDKL-YGESPKLATAIFSLAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~--~i~i~~s~l---~~~~-~g~~~~~i~~lf~~a~~~~p~II~IDEiD~ 270 (341)
.+..-+.|.||.|+|||+|++.++...... -+.++...+ .... ... ...-+-.+..+....|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 556678999999999999999999865211 112221110 0000 111 11223334455566899999999744
No 448
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.96 E-value=0.0017 Score=61.10 Aligned_cols=69 Identities=25% Similarity=0.274 Sum_probs=36.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh--hhc--CCchHHHHHHH----HHHHhcCCeEEEEcccchh
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD--KLY--GESPKLATAIF----SLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~--~~~--g~~~~~i~~lf----~~a~~~~p~II~IDEiD~l 271 (341)
|+|+|.||||||++|+.|+..+ +..+..++...+.- .-+ ...++..+..+ ..+.. ...||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7899999999999999998875 56666666544431 112 22244444333 22222 3479999998876
Q ss_pred h
Q psy15087 272 L 272 (341)
Q Consensus 272 ~ 272 (341)
-
T Consensus 83 K 83 (270)
T PF08433_consen 83 K 83 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 449
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.0086 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
..-++|.||.|+|||++++.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999963
No 450
>PLN02199 shikimate kinase
Probab=96.96 E-value=0.00091 Score=63.37 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+..+++|.|.+|||||++++.+|+.++.+|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 4668999999999999999999999999998765
No 451
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.96 E-value=0.0006 Score=60.96 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=16.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-.+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999997666665554
No 452
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.95 E-value=0.0091 Score=55.48 Aligned_cols=97 Identities=21% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh--------------h---------------cC--
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK--------------L---------------YG-- 242 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~--------------~---------------~g-- 242 (341)
+...+.+|++|+||||||.++..++.+. |-+.+.++..+.... + .+
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~ 99 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLV 99 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccccccccc
Confidence 4667789999999999999999986654 566666654332110 0 01
Q ss_pred --------CchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhc
Q psy15087 243 --------ESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD 295 (341)
Q Consensus 243 --------~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld 295 (341)
........+...+....+.++++|-+-.+.-...... ...+....+...+.
T Consensus 100 ~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~--~~r~~~~~l~~~~~ 158 (260)
T COG0467 100 SIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPA--LVRRILLLLKRFLK 158 (260)
T ss_pred cccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcCchH--HHHHHHHHHHHHHH
Confidence 1122344555566666688999999986543322221 12444444544443
No 453
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.94 E-value=0.0024 Score=59.50 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechh---------hhhhhc---------------CCc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDIST---------LTDKLY---------------GES 244 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~---------l~~~~~---------------g~~ 244 (341)
....-.=|+||||||||.|+-.+|-.. +...++++... +...+. -..
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCH
Confidence 334445599999999999999887654 33466665432 111111 011
Q ss_pred h---HHHHHHHHHHHhcCCeEEEEcccchhhhcCCC--CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 245 P---KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS--SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 245 ~---~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~--~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
+ ..+..+.......+..+|+||-|-.++...-. +....-...+..++..|..+.... ++.|+.|..
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~--~iaVvvTNq 186 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKY--NIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHT--T-EEEEEEE
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhC--CceEEeece
Confidence 1 11222223333446689999999999864321 122222344555555555555433 466665543
No 454
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.93 E-value=0.0083 Score=51.94 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+..-+.+.||.|+|||+|++.++..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566779999999999999999999875
No 455
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.92 E-value=0.0014 Score=59.10 Aligned_cols=38 Identities=34% Similarity=0.449 Sum_probs=29.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
-++++||+|||||.+|-++|+..|.|++..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 36899999999999999999999999999987665543
No 456
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.91 E-value=0.0027 Score=57.20 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-+.+.||+|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998765
No 457
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.91 E-value=0.0012 Score=59.13 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=26.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
+.-+++.|+||+|||++|+.+|.+++..++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 446899999999999999999999987653
No 458
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0048 Score=60.58 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+.+.+.+.+.+...+..+..+. ..++..++|.||+|+|||+++..+|..+
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666667666665444333221 3456779999999999999999998765
No 459
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.90 E-value=0.0059 Score=59.35 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
+....-+.|+||||||||.|+..+|-
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHH
Confidence 45566688999999999999998863
No 460
>PLN02459 probable adenylate kinase
Probab=96.89 E-value=0.0011 Score=61.74 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=27.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..++|.||||+||+++++.+|+.++.+.++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 4588899999999999999999998776654
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=96.88 E-value=0.0062 Score=60.95 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=46.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhh---------------hhcC-----CchHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTD---------------KLYG-----ESPKLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~---------------~~~g-----~~~~~i~~lf~ 253 (341)
.+|.-++++||+|+|||+++..+|..+ |..+..+++..... .++. ...........
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 456789999999999999887777644 55555555432111 0111 12233344555
Q ss_pred HHHhcCCeEEEEcccchh
Q psy15087 254 LAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 254 ~a~~~~p~II~IDEiD~l 271 (341)
.++.....+|+||=..++
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789999987654
No 462
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.88 E-value=0.0077 Score=59.01 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
..+..+++.||.|||||++.+++...+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4567899999999999999999987773
No 463
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.87 E-value=0.015 Score=50.41 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-+.+|+++|.|||++|-++|-+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37789999999999999997655
No 464
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.87 E-value=0.0031 Score=62.55 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=28.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+.|.|.|++|||||+|+++||..+|...+.-
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E 250 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWE 250 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeee
Confidence 56799999999999999999999998876553
No 465
>PRK12338 hypothetical protein; Provisional
Probab=96.86 E-value=0.0012 Score=63.24 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
.|.-+++.|+||||||++|+++|..++...+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4567899999999999999999999987654
No 466
>KOG0058|consensus
Probab=96.85 E-value=0.0062 Score=63.48 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=27.5
Q ss_pred HHhhcCC-CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 190 LLKESGL-LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 190 ~~~~~g~-~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+++..+ ++|...|-|+||+|+|||++|..+-+-.
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444332 5778889999999999999999997755
No 467
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.84 E-value=0.0065 Score=64.99 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=41.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh----hcCCchHHHHHHHHH-HH----hcCCeEEEEccc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK----LYGESPKLATAIFSL-AE----KIQPCIIFIDEI 268 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~----~~g~~~~~i~~lf~~-a~----~~~p~II~IDEi 268 (341)
.-++|.|+||||||++++++...+ |..++-+........ ..|.....+..+... .. .....+|++||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999996544 556655543332221 122222222222111 11 123479999999
Q ss_pred chh
Q psy15087 269 DSL 271 (341)
Q Consensus 269 D~l 271 (341)
..+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 776
No 468
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.84 E-value=0.0064 Score=64.46 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-|.+.|++|||||||+|.+....
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444559999999999999999998755
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.016 Score=58.93 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH----cCCcEEEeech
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE----ANVSFINLDIS 234 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~----l~~~~i~i~~s 234 (341)
+.+.+.+|+.||||||||++|..++.+ .|-+.++++..
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 466788999999999999999998443 24566555543
No 470
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.014 Score=52.72 Aligned_cols=129 Identities=17% Similarity=0.236 Sum_probs=71.2
Q ss_pred hchhHHhhcCC-CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh----hhh-------------------
Q psy15087 186 KNRNLLKESGL-LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST----LTD------------------- 238 (341)
Q Consensus 186 ~~~~~~~~~g~-~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~----l~~------------------- 238 (341)
.+-++-++.|- +..+.-+++.|+.|||||.|...++.-. +.....++... +..
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 34444455442 4445558899999999999999997533 22222222110 000
Q ss_pred ---------hh-cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy15087 239 ---------KL-YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIM 308 (341)
Q Consensus 239 ---------~~-~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVI 308 (341)
.| .....+.+..+....+.+...||+||-+..+.... ...-...|+..+..+...+ -+||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~~~vl~fm~~~r~l~d~g---KvIi 162 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SEDAVLNFMTFLRKLSDLG---KVII 162 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cHHHHHHHHHHHHHHHhCC---CEEE
Confidence 00 01223455666666667778999999999886432 1212233444444343222 2445
Q ss_pred EEeCCCCCCcHHHHccC
Q psy15087 309 GATNRPDDIDPAIARRM 325 (341)
Q Consensus 309 atTN~~~~ld~al~rRf 325 (341)
.|.| |+.++++.+-|+
T Consensus 163 lTvh-p~~l~e~~~~ri 178 (235)
T COG2874 163 LTVH-PSALDEDVLTRI 178 (235)
T ss_pred EEeC-hhhcCHHHHHHH
Confidence 5555 567777666654
No 471
>PTZ00035 Rad51 protein; Provisional
Probab=96.81 E-value=0.0078 Score=58.41 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+....-+.++||||||||+++..++..
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 456667889999999999999988753
No 472
>PLN02165 adenylate isopentenyltransferase
Probab=96.79 E-value=0.0014 Score=63.12 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
..+..++|.||+|||||+||..+|..++..+++.+.-
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3445689999999999999999999999877776543
No 473
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.79 E-value=0.0048 Score=65.70 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=53.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc---C--CcEEEeechh----hhhhhcCCchHHHHHHHHHH---------H-hcCCe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA---N--VSFINLDIST----LTDKLYGESPKLATAIFSLA---------E-KIQPC 261 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l---~--~~~i~i~~s~----l~~~~~g~~~~~i~~lf~~a---------~-~~~p~ 261 (341)
+-+++.|+||||||++++++...+ + .+++-+.... -+....|.....+..++... . .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999996654 3 3343332221 11111222222233333210 1 12457
Q ss_pred EEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCC
Q psy15087 262 IIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317 (341)
Q Consensus 262 II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~l 317 (341)
+|++||+..+. ..+...|+..+ . ...+++++|=.+....+
T Consensus 419 llIvDEaSMvd-----------~~~~~~Ll~~~---~--~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 419 LLIVDESSMMD-----------TWLALSLLAAL---P--DHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEEeccccCC-----------HHHHHHHHHhC---C--CCCEEEEECccccccCC
Confidence 99999998762 12233444332 2 23467777766654333
No 474
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.79 E-value=0.00065 Score=61.48 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHc
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l 224 (341)
++++|+||||||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 475
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.79 E-value=0.013 Score=58.49 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh-----------h----hhcC-----CchHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT-----------D----KLYG-----ESPKLATAIFSL 254 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~-----------~----~~~g-----~~~~~i~~lf~~ 254 (341)
.+|.-++|+||+|+|||+++..+|..+ |..+.-+++.... . .+++ +........+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346678999999999999999998766 5555555543211 0 1111 111223334455
Q ss_pred HHhcCCeEEEEcccchh
Q psy15087 255 AEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 255 a~~~~p~II~IDEiD~l 271 (341)
++.....+|+||=..++
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 55556689999987553
No 476
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.78 E-value=0.0049 Score=54.99 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=23.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc-------CCcEEEeech
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA-------NVSFINLDIS 234 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l-------~~~~i~i~~s 234 (341)
.++|+.|++|+|||++++.++..+ ...++-+++.
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 389999999999999999886654 3345555544
No 477
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0062 Score=59.85 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=59.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc--CCcEEEeechhhhhhh------cC--------CchHHHHHHHHHHHhcCC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA--NVSFINLDISTLTDKL------YG--------ESPKLATAIFSLAEKIQP 260 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l--~~~~i~i~~s~l~~~~------~g--------~~~~~i~~lf~~a~~~~p 260 (341)
+-+..-+|+-|.||.|||+|.-.+|..+ ..++.++++.+-.... .+ -.+..+..+.......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4566678899999999999988887776 2378888876544321 12 124456788888888999
Q ss_pred eEEEEcccchhhhcC
Q psy15087 261 CIIFIDEIDSLLRSR 275 (341)
Q Consensus 261 ~II~IDEiD~l~~~~ 275 (341)
.+++||-|.-+....
T Consensus 170 ~lvVIDSIQT~~s~~ 184 (456)
T COG1066 170 DLVVIDSIQTLYSEE 184 (456)
T ss_pred CEEEEeccceeeccc
Confidence 999999999987654
No 478
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.78 E-value=0.0054 Score=59.00 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
+.+..-+.++||||+|||+++..+|.
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 45666789999999999999998875
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.78 E-value=0.0012 Score=57.63 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
-+++.||||+|||+++++++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999875
No 480
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.77 E-value=0.018 Score=58.81 Aligned_cols=77 Identities=25% Similarity=0.319 Sum_probs=49.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh------cC----------------------Cch
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL------YG----------------------ESP 245 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~------~g----------------------~~~ 245 (341)
+.....++++||||+|||+++..++.+. |-+.+.++..+-.... +| ..+
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 4566779999999999999999987543 5555555433211100 00 012
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
..+..+.......++.+|+||-+..+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 2344444555667889999999998864
No 481
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.0052 Score=57.73 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=53.5
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchH
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPK 246 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~ 246 (341)
++=.+++.+.+.++..-. ..+..+.||.|.+||||+++++..|.-.+..++.+....-.+ ..+...
T Consensus 10 lVlf~~ai~hi~ri~RvL------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL------------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ----HHHHHHHHHHHHHH------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred eeeHHHHHHHHHHHHHHH------------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 445555666555543321 245678999999999999999999999999999887543111 122234
Q ss_pred HHHHHHHHHH-hcCCeEEEEccc
Q psy15087 247 LATAIFSLAE-KIQPCIIFIDEI 268 (341)
Q Consensus 247 ~i~~lf~~a~-~~~p~II~IDEi 268 (341)
.++.++..|. +..|.+++++|-
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHHhccCCCeEEEecCc
Confidence 4555555444 456788888764
No 482
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.77 E-value=0.021 Score=49.50 Aligned_cols=62 Identities=24% Similarity=0.346 Sum_probs=42.8
Q ss_pred ECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 206 YGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 206 ~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
.+.+|||||+++.++++.++- +-.+...++..+ ...+.+..+...+.+....+||.|-=...
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~ 66 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ 66 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch
Confidence 589999999999999999873 333444444333 34556667777765556678888865554
No 483
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.77 E-value=0.0095 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.++|.||..+|||+++|.+|...
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 578999999999999999997643
No 484
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.028 Score=57.46 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.....+.|+||+|+|||+++..+|..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999998754
No 485
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.76 E-value=0.0028 Score=56.64 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY 241 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~ 241 (341)
-+.++|++|||||++++.++..+|++++. +..+....+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHHHHHH
Confidence 37899999999999999999988988875 444444333
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.76 E-value=0.013 Score=59.95 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=49.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhhh--------------hc------------C----
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTDK--------------LY------------G---- 242 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~~--------------~~------------g---- 242 (341)
+.+.+.+|++|+||+|||+++..++.+. |-+.+.++..+-... +. .
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 4667789999999999999999875432 445555544322110 00 0
Q ss_pred ------CchHHHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 243 ------ESPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 243 ------~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
+.+..+..+.......++..++||-+..+..
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 0122344455566677889999999988643
No 487
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.75 E-value=0.0029 Score=61.90 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=43.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC------CcEEEeech-hhhhhh------------cCCchHHHHHHHHHHHhcC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN------VSFINLDIS-TLTDKL------------YGESPKLATAIFSLAEKIQ 259 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~------~~~i~i~~s-~l~~~~------------~g~~~~~i~~lf~~a~~~~ 259 (341)
+...++++||+|+|||+++++++..+. ..++.+.-+ ++.-.. .+............+.+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 345699999999999999999988762 223332211 111000 1111112334445567789
Q ss_pred CeEEEEcccch
Q psy15087 260 PCIIFIDEIDS 270 (341)
Q Consensus 260 p~II~IDEiD~ 270 (341)
|.++++.|+-.
T Consensus 213 Pd~i~vGEiRd 223 (358)
T TIGR02524 213 PHAILVGEARD 223 (358)
T ss_pred CCEEeeeeeCC
Confidence 99999999754
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.74 E-value=0.0018 Score=57.65 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.++.-+.|.||+|||||+|++.++..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4566799999999999999999999875
No 489
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.73 E-value=0.0019 Score=56.71 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
..+.+.||+|||||+++++++..++..++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 45899999999999999999999886543
No 490
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.71 E-value=0.0038 Score=59.40 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSF 228 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~ 228 (341)
+.|..+++.|++|||||++|..+|..++.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4567799999999999999999999998873
No 491
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.71 E-value=0.0025 Score=57.08 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
..+.-|.|.||+|||||+|+++|+..++
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999999984
No 492
>PRK13808 adenylate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=62.89 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|+||||+|||++++.||..++++.+.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 389999999999999999999999876665
No 493
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.70 E-value=0.002 Score=61.62 Aligned_cols=34 Identities=41% Similarity=0.554 Sum_probs=29.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
+.-+++.||+|||||++|..+|.+++..+++.+.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 3568999999999999999999999988777655
No 494
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.69 E-value=0.021 Score=57.11 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=45.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhh---------------hhc--C--Cch-HHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTD---------------KLY--G--ESP-KLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~---------------~~~--g--~~~-~~i~~lf~ 253 (341)
.+|..++++||+|+|||+++..+|..+ |..+..+++..... .++ + ... ........
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 346789999999999999988887653 45555555542211 011 1 111 23345555
Q ss_pred HHHhcCCeEEEEcccchh
Q psy15087 254 LAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 254 ~a~~~~p~II~IDEiD~l 271 (341)
.+......+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 565566779999987554
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.021 Score=57.20 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeech
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDIS 234 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s 234 (341)
.+..++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35578999999999999988887654 3345445443
No 496
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.69 E-value=0.013 Score=53.53 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+.+.||+|||||++++.+|+.+|.+++...
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~ 36 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTG 36 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 46889999999999999999999998887644
No 497
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.68 E-value=0.002 Score=56.59 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+.|+|+||||||++++.+++ +|++++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999998 787776554
No 498
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.67 E-value=0.0018 Score=57.53 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=24.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHc-CCcEEEee
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA-NVSFINLD 232 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l-~~~~i~i~ 232 (341)
|.+.|+||||||++|+.++..+ ++.++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5788999999999999999998 45555443
No 499
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.66 E-value=0.0057 Score=57.88 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=47.1
Q ss_pred Cce-EEEECCCCCCHHHHHHHHHHHcCC----cEEEeech-h--------hh-hhhcCCchHHHHHHHHHHHhcCCeEEE
Q psy15087 200 PKG-ILLYGPPGCGKTMIAKATAKEANV----SFINLDIS-T--------LT-DKLYGESPKLATAIFSLAEKIQPCIIF 264 (341)
Q Consensus 200 ~~g-vLL~GPpGtGKT~LAkalA~~l~~----~~i~i~~s-~--------l~-~~~~g~~~~~i~~lf~~a~~~~p~II~ 264 (341)
++| ||..||.|||||+...++-...|. +++.+.-+ + +. ..-+|.......+.+..|.+-.|.||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 444 788899999999988888777753 33333211 1 11 122455445555666777778999999
Q ss_pred Ecccchh
Q psy15087 265 IDEIDSL 271 (341)
Q Consensus 265 IDEiD~l 271 (341)
+-|+-.+
T Consensus 204 vGEmRD~ 210 (353)
T COG2805 204 VGEMRDL 210 (353)
T ss_pred EeccccH
Confidence 9997543
No 500
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.65 E-value=0.014 Score=56.72 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
+.+..-+.++|+||+|||.++..+|.
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCV 145 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHH
Confidence 45566688999999999999988874
Done!