Query psy15087
Match_columns 341
No_of_seqs 412 out of 2542
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:11:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.7E-40 1.2E-44 321.2 18.7 180 157-339 140-324 (405)
2 4b4t_I 26S protease regulatory 100.0 1.2E-38 4.1E-43 311.8 13.9 179 158-339 175-358 (437)
3 4b4t_M 26S protease regulatory 100.0 2.2E-38 7.6E-43 312.3 15.5 179 158-339 174-357 (434)
4 4b4t_H 26S protease regulatory 100.0 5.4E-38 1.8E-42 309.8 17.5 179 158-339 202-385 (467)
5 4b4t_L 26S protease subunit RP 100.0 2.9E-38 9.9E-43 311.8 14.9 179 158-339 174-357 (437)
6 3cf2_A TER ATPase, transitiona 100.0 9.3E-38 3.2E-42 327.6 16.5 256 81-339 374-653 (806)
7 4b4t_K 26S protease regulatory 100.0 1.6E-37 5.5E-42 305.9 17.1 179 158-339 165-349 (428)
8 3cf2_A TER ATPase, transitiona 100.0 4.1E-34 1.4E-38 300.0 12.0 178 159-339 198-377 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.6E-32 2.9E-36 256.6 18.0 179 158-339 5-184 (322)
10 3eie_A Vacuolar protein sortin 100.0 3.3E-31 1.1E-35 252.1 14.8 181 156-339 9-189 (322)
11 3cf0_A Transitional endoplasmi 100.0 1.5E-30 5.1E-35 245.5 14.1 183 154-339 4-191 (301)
12 2qp9_X Vacuolar protein sortin 100.0 2.4E-30 8.3E-35 249.7 15.0 183 154-339 40-222 (355)
13 2zan_A Vacuolar protein sortin 100.0 1.3E-29 4.3E-34 251.7 14.5 184 153-339 122-306 (444)
14 2x8a_A Nuclear valosin-contain 100.0 1.3E-29 4.3E-34 236.5 13.1 178 159-339 4-183 (274)
15 3d8b_A Fidgetin-like protein 1 100.0 1.3E-28 4.4E-33 237.7 16.2 184 154-339 73-256 (357)
16 3b9p_A CG5977-PA, isoform A; A 100.0 2.1E-28 7.1E-33 229.0 14.8 186 152-339 8-194 (297)
17 3vfd_A Spastin; ATPase, microt 100.0 2.3E-28 7.8E-33 238.3 14.8 183 155-339 105-287 (389)
18 2ce7_A Cell division protein F 100.0 7.2E-28 2.5E-32 240.5 15.7 182 154-339 4-191 (476)
19 3h4m_A Proteasome-activating n 99.9 2.3E-27 7.7E-32 220.5 17.0 179 158-339 10-193 (285)
20 3hu3_A Transitional endoplasmi 99.9 1.2E-27 4.2E-32 240.0 15.3 176 161-339 200-377 (489)
21 1lv7_A FTSH; alpha/beta domain 99.9 2.9E-27 9.9E-32 217.1 15.9 179 157-339 4-187 (257)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.2E-27 7.7E-32 217.2 13.2 176 160-339 1-182 (262)
23 2r62_A Cell division protease 99.9 4.1E-27 1.4E-31 217.0 3.7 181 156-339 2-188 (268)
24 1ypw_A Transitional endoplasmi 99.9 5.1E-27 1.7E-31 248.4 4.6 179 158-339 470-653 (806)
25 1ixz_A ATP-dependent metallopr 99.9 7.8E-25 2.7E-29 200.5 16.2 181 155-339 6-191 (254)
26 2dhr_A FTSH; AAA+ protein, hex 99.9 1.6E-25 5.5E-30 224.7 12.5 176 160-339 26-206 (499)
27 1iy2_A ATP-dependent metallopr 99.9 1.7E-23 6E-28 194.4 19.3 179 157-339 32-215 (278)
28 1ypw_A Transitional endoplasmi 99.9 4.6E-24 1.6E-28 225.8 13.7 178 159-339 198-377 (806)
29 3t15_A Ribulose bisphosphate c 99.9 6.4E-24 2.2E-28 199.6 6.9 141 197-339 33-190 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 7.2E-23 2.5E-27 203.6 4.6 168 159-336 31-226 (456)
31 3syl_A Protein CBBX; photosynt 99.8 3.3E-20 1.1E-24 173.8 9.0 164 166-339 32-209 (309)
32 1g41_A Heat shock protein HSLU 99.8 1E-19 3.5E-24 179.7 9.2 166 161-337 10-181 (444)
33 1ofh_A ATP-dependent HSL prote 99.8 2.2E-19 7.7E-24 167.5 10.1 173 166-338 16-206 (310)
34 1jbk_A CLPB protein; beta barr 99.8 3.2E-19 1.1E-23 153.3 9.9 155 161-339 18-190 (195)
35 1qvr_A CLPB protein; coiled co 99.8 2.4E-19 8.3E-24 190.9 9.0 268 22-339 51-337 (854)
36 2p65_A Hypothetical protein PF 99.8 1.2E-18 4.2E-23 149.7 10.4 151 161-335 18-187 (187)
37 3pxg_A Negative regulator of g 99.8 4.9E-19 1.7E-23 176.6 8.3 258 22-338 51-329 (468)
38 3hws_A ATP-dependent CLP prote 99.8 2.3E-18 8E-23 165.8 12.6 172 167-338 17-260 (363)
39 1d2n_A N-ethylmaleimide-sensit 99.7 2.9E-18 1E-22 158.4 10.2 163 165-338 33-200 (272)
40 3pxi_A Negative regulator of g 99.7 9.8E-19 3.4E-23 183.9 7.8 257 22-339 51-330 (758)
41 3pfi_A Holliday junction ATP-d 99.7 1.3E-17 4.4E-22 158.3 14.8 151 161-339 25-189 (338)
42 1r6b_X CLPA protein; AAA+, N-t 99.7 1.3E-17 4.3E-22 175.3 14.8 276 22-339 45-354 (758)
43 3m6a_A ATP-dependent protease 99.7 7.1E-18 2.4E-22 171.2 8.4 162 161-339 77-258 (543)
44 1um8_A ATP-dependent CLP prote 99.7 8.2E-17 2.8E-21 155.6 13.3 169 166-336 22-232 (376)
45 3uk6_A RUVB-like 2; hexameric 99.7 1.6E-16 5.5E-21 152.2 13.2 154 160-338 39-263 (368)
46 3u61_B DNA polymerase accessor 99.7 9.4E-17 3.2E-21 151.6 10.9 143 161-338 22-169 (324)
47 1hqc_A RUVB; extended AAA-ATPa 99.7 8.6E-17 2.9E-21 151.3 9.9 149 161-338 8-172 (324)
48 4fcw_A Chaperone protein CLPB; 99.6 3.9E-16 1.3E-20 146.0 10.3 158 165-338 17-220 (311)
49 3n70_A Transport activator; si 99.6 4.4E-16 1.5E-20 130.9 9.0 133 166-336 2-144 (145)
50 3co5_A Putative two-component 99.6 1.6E-16 5.3E-21 133.4 5.3 133 166-336 5-142 (143)
51 3pvs_A Replication-associated 99.6 8.1E-16 2.8E-20 152.6 11.3 139 161-338 22-169 (447)
52 2bjv_A PSP operon transcriptio 99.6 2.5E-15 8.6E-20 138.0 13.7 152 161-339 2-182 (265)
53 2chg_A Replication factor C sm 99.6 4.3E-15 1.5E-19 130.3 14.1 143 160-338 12-165 (226)
54 1g8p_A Magnesium-chelatase 38 99.6 1.6E-15 5.4E-20 144.0 12.1 150 160-336 19-220 (350)
55 3pxi_A Negative regulator of g 99.6 1.5E-15 5E-20 159.7 12.5 155 164-338 490-666 (758)
56 1r6b_X CLPA protein; AAA+, N-t 99.6 2.1E-15 7.1E-20 158.4 11.5 155 165-338 458-657 (758)
57 1l8q_A Chromosomal replication 99.6 2.6E-15 9E-20 141.9 11.1 153 160-337 6-169 (324)
58 2v1u_A Cell division control p 99.6 7.7E-15 2.6E-19 140.3 13.2 157 164-338 18-205 (387)
59 2r44_A Uncharacterized protein 99.6 1.3E-15 4.5E-20 144.3 6.6 149 162-339 24-190 (331)
60 1ojl_A Transcriptional regulat 99.6 9.2E-15 3.2E-19 137.8 10.3 147 166-339 3-178 (304)
61 2qby_B CDC6 homolog 3, cell di 99.6 2.7E-14 9.2E-19 137.0 13.5 148 165-338 20-201 (384)
62 1sxj_A Activator 1 95 kDa subu 99.6 5.8E-15 2E-19 148.8 9.2 165 160-338 34-213 (516)
63 2z4s_A Chromosomal replication 99.5 9.3E-15 3.2E-19 144.6 10.2 157 159-339 99-268 (440)
64 2chq_A Replication factor C sm 99.5 1.3E-14 4.3E-19 135.5 9.9 149 158-338 10-165 (319)
65 1sxj_D Activator 1 41 kDa subu 99.5 1.6E-14 5.5E-19 137.0 10.0 142 160-337 32-195 (353)
66 3te6_A Regulatory protein SIR3 99.5 1.4E-14 4.9E-19 137.3 8.9 148 167-338 22-202 (318)
67 1iqp_A RFCS; clamp loader, ext 99.5 5.2E-14 1.8E-18 131.7 12.5 146 160-337 20-172 (327)
68 1njg_A DNA polymerase III subu 99.5 7.9E-14 2.7E-18 123.4 13.0 143 161-338 19-189 (250)
69 1sxj_B Activator 1 37 kDa subu 99.5 4.6E-14 1.6E-18 131.9 11.7 143 160-338 16-170 (323)
70 3cmw_A Protein RECA, recombina 99.5 2.1E-14 7.2E-19 160.1 9.9 153 158-313 1013-1217(1706)
71 1jr3_A DNA polymerase III subu 99.5 8.3E-14 2.8E-18 133.1 11.6 143 161-338 12-182 (373)
72 2qby_A CDC6 homolog 1, cell di 99.5 3.3E-13 1.1E-17 128.7 15.5 157 162-338 17-201 (386)
73 3bos_A Putative DNA replicatio 99.5 2.3E-13 7.7E-18 121.4 13.2 144 161-339 24-179 (242)
74 1qvr_A CLPB protein; coiled co 99.5 7E-14 2.4E-18 148.8 10.9 158 164-337 557-760 (854)
75 1fnn_A CDC6P, cell division co 99.5 5.9E-13 2E-17 127.5 14.1 153 164-337 16-196 (389)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.7E-13 5.7E-18 137.5 10.3 143 166-336 23-184 (500)
77 1sxj_E Activator 1 40 kDa subu 99.4 3.6E-13 1.2E-17 128.1 10.6 147 158-338 7-197 (354)
78 1in4_A RUVB, holliday junction 99.4 1.6E-12 5.6E-17 123.7 14.0 150 161-338 21-184 (334)
79 1sxj_C Activator 1 40 kDa subu 99.4 1.9E-12 6.5E-17 123.2 14.0 140 161-336 21-171 (340)
80 2gno_A DNA polymerase III, gam 99.4 4.4E-12 1.5E-16 119.6 12.5 133 169-338 1-143 (305)
81 1a5t_A Delta prime, HOLB; zinc 99.4 7.6E-12 2.6E-16 119.1 14.2 138 169-338 6-171 (334)
82 3f9v_A Minichromosome maintena 99.3 7.4E-14 2.5E-18 143.1 -0.5 153 166-336 296-480 (595)
83 3ec2_A DNA replication protein 99.2 2.2E-11 7.5E-16 105.1 8.7 99 160-271 5-112 (180)
84 3k1j_A LON protease, ATP-depen 99.2 1.3E-11 4.5E-16 126.6 6.6 50 160-225 36-85 (604)
85 4akg_A Glutathione S-transfera 99.2 8.1E-11 2.8E-15 136.5 11.9 132 198-339 1265-1423(2695)
86 2kjq_A DNAA-related protein; s 99.1 2.6E-10 8.7E-15 96.3 9.2 108 199-334 35-148 (149)
87 2w58_A DNAI, primosome compone 99.1 8.3E-10 2.8E-14 96.6 12.0 104 160-271 20-127 (202)
88 1w5s_A Origin recognition comp 99.1 4.2E-10 1.4E-14 108.5 10.3 161 164-337 21-218 (412)
89 1ny5_A Transcriptional regulat 99.0 7.3E-10 2.5E-14 107.6 11.3 149 164-339 136-313 (387)
90 3dzd_A Transcriptional regulat 98.9 2.2E-09 7.7E-14 103.6 9.8 149 165-340 129-305 (368)
91 2r2a_A Uncharacterized protein 98.9 1E-09 3.5E-14 97.2 6.5 128 201-338 6-157 (199)
92 2vhj_A Ntpase P4, P4; non- hyd 98.9 7.7E-10 2.6E-14 104.6 4.5 118 198-320 121-241 (331)
93 2qgz_A Helicase loader, putati 98.9 3.7E-09 1.3E-13 99.6 9.1 70 200-271 152-226 (308)
94 3f8t_A Predicted ATPase involv 98.7 5.5E-09 1.9E-13 103.3 5.0 147 165-337 213-384 (506)
95 1tue_A Replication protein E1; 98.7 3.1E-08 1.1E-12 87.8 9.4 111 199-334 57-179 (212)
96 4akg_A Glutathione S-transfera 98.7 4.4E-08 1.5E-12 114.0 11.5 126 200-337 645-783 (2695)
97 2fna_A Conserved hypothetical 98.7 4.9E-07 1.7E-11 84.7 15.9 56 162-235 10-65 (357)
98 2qen_A Walker-type ATPase; unk 98.6 9.2E-07 3.2E-11 82.7 17.1 55 162-234 9-63 (350)
99 3cmu_A Protein RECA, recombina 98.5 1.7E-07 5.8E-12 106.3 10.1 112 197-310 1424-1560(2050)
100 3vkg_A Dynein heavy chain, cyt 98.4 6.3E-07 2.1E-11 105.2 9.7 130 199-338 1303-1460(3245)
101 1svm_A Large T antigen; AAA+ f 98.4 1.9E-07 6.6E-12 90.3 4.6 105 197-323 166-272 (377)
102 3vkg_A Dynein heavy chain, cyt 98.3 1.4E-06 4.8E-11 102.3 11.1 130 200-337 604-743 (3245)
103 1u0j_A DNA replication protein 98.2 1.3E-06 4.5E-11 80.4 6.2 27 200-226 104-130 (267)
104 1ye8_A Protein THEP1, hypothet 98.1 1.3E-05 4.4E-10 69.2 10.7 27 202-228 2-28 (178)
105 2w0m_A SSO2452; RECA, SSPF, un 98.0 2.9E-05 9.8E-10 68.2 11.0 36 197-232 20-58 (235)
106 1qhx_A CPT, protein (chloramph 97.9 8.7E-06 3E-10 69.1 5.2 37 200-236 3-39 (178)
107 3cmu_A Protein RECA, recombina 97.9 2.5E-05 8.7E-10 88.8 10.2 123 188-312 718-867 (2050)
108 1n0w_A DNA repair protein RAD5 97.9 1.5E-05 5.1E-10 70.8 6.7 77 197-273 21-133 (243)
109 3hr8_A Protein RECA; alpha and 97.9 3.2E-05 1.1E-09 74.1 8.9 77 197-273 58-153 (356)
110 3trf_A Shikimate kinase, SK; a 97.9 8.5E-06 2.9E-10 69.7 4.3 33 200-232 5-37 (185)
111 2cvh_A DNA repair and recombin 97.9 2.4E-05 8.2E-10 68.4 7.2 38 197-234 17-54 (220)
112 1xp8_A RECA protein, recombina 97.9 5.3E-05 1.8E-09 72.9 10.1 77 197-273 71-166 (366)
113 2ehv_A Hypothetical protein PH 97.8 0.00011 3.8E-09 65.3 10.9 25 197-221 27-51 (251)
114 3vaa_A Shikimate kinase, SK; s 97.8 1.2E-05 4.2E-10 70.0 4.5 35 198-232 23-57 (199)
115 2zr9_A Protein RECA, recombina 97.8 2.4E-05 8.2E-10 74.8 6.5 77 197-273 58-153 (349)
116 2z43_A DNA repair and recombin 97.8 6.5E-05 2.2E-09 70.7 9.3 78 197-274 104-218 (324)
117 1v5w_A DMC1, meiotic recombina 97.8 5.9E-05 2E-09 71.7 9.0 78 197-274 119-234 (343)
118 3upu_A ATP-dependent DNA helic 97.8 6.5E-05 2.2E-09 74.1 9.5 54 156-224 15-69 (459)
119 2p5t_B PEZT; postsegregational 97.7 0.00012 4.2E-09 66.2 9.7 39 198-236 30-68 (253)
120 1u94_A RECA protein, recombina 97.7 4.3E-05 1.5E-09 73.2 6.9 77 197-273 60-155 (356)
121 3iij_A Coilin-interacting nucl 97.7 2.5E-05 8.6E-10 66.5 4.6 34 199-232 10-43 (180)
122 2dr3_A UPF0273 protein PH0284; 97.7 0.00023 7.9E-09 63.0 11.0 36 197-232 20-58 (247)
123 3kb2_A SPBC2 prophage-derived 97.7 2.7E-05 9.2E-10 65.3 4.4 31 202-232 3-33 (173)
124 4a74_A DNA repair and recombin 97.7 0.00015 5.3E-09 63.5 9.4 28 197-224 22-49 (231)
125 2rhm_A Putative kinase; P-loop 97.7 2.7E-05 9.1E-10 66.7 4.1 35 198-232 3-37 (193)
126 1via_A Shikimate kinase; struc 97.7 2.6E-05 9E-10 66.2 4.0 31 202-232 6-36 (175)
127 2iyv_A Shikimate kinase, SK; t 97.7 2.9E-05 1E-09 66.3 4.2 31 202-232 4-34 (184)
128 1kag_A SKI, shikimate kinase I 97.6 4.5E-05 1.5E-09 64.3 4.9 32 200-231 4-35 (173)
129 1zuh_A Shikimate kinase; alpha 97.6 3.4E-05 1.2E-09 64.9 4.1 33 200-232 7-39 (168)
130 1y63_A LMAJ004144AAA protein; 97.6 3.5E-05 1.2E-09 66.2 4.2 34 199-232 9-43 (184)
131 2cdn_A Adenylate kinase; phosp 97.6 4.7E-05 1.6E-09 66.1 4.6 33 199-231 19-51 (201)
132 2orw_A Thymidine kinase; TMTK, 97.6 6.2E-05 2.1E-09 65.2 5.3 31 201-231 4-37 (184)
133 1tev_A UMP-CMP kinase; ploop, 97.6 4.3E-05 1.5E-09 65.3 4.1 32 200-231 3-34 (196)
134 2c95_A Adenylate kinase 1; tra 97.6 4.6E-05 1.6E-09 65.4 4.1 35 198-232 7-41 (196)
135 1aky_A Adenylate kinase; ATP:A 97.6 5E-05 1.7E-09 67.0 4.5 33 199-231 3-35 (220)
136 1zp6_A Hypothetical protein AT 97.5 4.9E-05 1.7E-09 65.1 4.0 39 198-236 7-45 (191)
137 3lw7_A Adenylate kinase relate 97.5 4.8E-05 1.6E-09 63.5 3.8 29 202-231 3-31 (179)
138 2r8r_A Sensor protein; KDPD, P 97.5 0.00073 2.5E-08 60.6 11.7 33 200-232 6-41 (228)
139 1e6c_A Shikimate kinase; phosp 97.5 5.7E-05 1.9E-09 63.5 4.2 31 202-232 4-34 (173)
140 2ze6_A Isopentenyl transferase 97.5 5.8E-05 2E-09 68.6 4.5 32 202-233 3-34 (253)
141 3t61_A Gluconokinase; PSI-biol 97.5 7.1E-05 2.4E-09 65.0 4.8 33 200-232 18-50 (202)
142 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00019 6.6E-09 65.2 7.7 38 200-237 4-44 (260)
143 2iut_A DNA translocase FTSK; n 97.5 0.0009 3.1E-08 67.7 13.1 66 261-336 345-412 (574)
144 3cm0_A Adenylate kinase; ATP-b 97.5 6.2E-05 2.1E-09 64.2 4.0 32 200-231 4-35 (186)
145 1gvn_B Zeta; postsegregational 97.5 0.00018 6.1E-09 66.7 7.3 39 198-236 31-69 (287)
146 1zd8_A GTP:AMP phosphotransfer 97.5 6.1E-05 2.1E-09 66.8 3.9 34 198-231 5-38 (227)
147 2bwj_A Adenylate kinase 5; pho 97.5 6.4E-05 2.2E-09 64.6 3.9 32 200-231 12-43 (199)
148 2b8t_A Thymidine kinase; deoxy 97.5 0.00057 2E-08 61.1 10.2 72 199-271 11-101 (223)
149 3tlx_A Adenylate kinase 2; str 97.5 0.00013 4.4E-09 65.7 6.0 35 198-232 27-61 (243)
150 1kht_A Adenylate kinase; phosp 97.5 6.2E-05 2.1E-09 64.1 3.6 31 201-231 4-39 (192)
151 2vli_A Antibiotic resistance p 97.5 6.6E-05 2.2E-09 63.7 3.7 30 200-229 5-34 (183)
152 3lda_A DNA repair protein RAD5 97.5 0.0002 6.8E-09 69.6 7.5 78 197-274 175-288 (400)
153 1z6t_A APAF-1, apoptotic prote 97.5 0.00055 1.9E-08 69.1 10.9 48 163-222 122-169 (591)
154 1ak2_A Adenylate kinase isoenz 97.5 9E-05 3.1E-09 66.1 4.6 34 198-231 14-47 (233)
155 1knq_A Gluconate kinase; ALFA/ 97.5 9.7E-05 3.3E-09 62.5 4.6 33 199-231 7-39 (175)
156 3cmw_A Protein RECA, recombina 97.4 0.00025 8.7E-09 79.8 9.1 77 197-273 729-824 (1706)
157 1ly1_A Polynucleotide kinase; 97.4 6.5E-05 2.2E-09 63.4 3.5 30 201-230 3-33 (181)
158 1pzn_A RAD51, DNA repair and r 97.4 0.00018 6E-09 68.6 6.9 28 197-224 128-155 (349)
159 3dl0_A Adenylate kinase; phosp 97.4 7.6E-05 2.6E-09 65.4 4.0 30 202-231 2-31 (216)
160 1ukz_A Uridylate kinase; trans 97.4 8.9E-05 3E-09 64.3 4.3 33 200-232 15-47 (203)
161 1qf9_A UMP/CMP kinase, protein 97.4 7.2E-05 2.5E-09 63.7 3.7 32 200-231 6-37 (194)
162 2pt5_A Shikimate kinase, SK; a 97.4 8.4E-05 2.9E-09 62.2 4.0 31 202-232 2-32 (168)
163 3umf_A Adenylate kinase; rossm 97.4 9.2E-05 3.1E-09 66.0 4.4 33 198-230 27-59 (217)
164 2i1q_A DNA repair and recombin 97.4 0.00025 8.5E-09 66.4 7.6 27 197-223 95-121 (322)
165 3fb4_A Adenylate kinase; psych 97.4 8.2E-05 2.8E-09 65.1 3.9 30 202-231 2-31 (216)
166 4eun_A Thermoresistant glucoki 97.4 0.00014 4.6E-09 63.3 5.0 33 198-230 27-59 (200)
167 1zak_A Adenylate kinase; ATP:A 97.4 6.4E-05 2.2E-09 66.3 2.9 33 199-231 4-36 (222)
168 3e1s_A Exodeoxyribonuclease V, 97.4 9.7E-05 3.3E-09 75.1 4.2 32 200-231 204-238 (574)
169 3io5_A Recombination and repai 97.4 0.00049 1.7E-08 64.8 8.6 72 202-273 30-125 (333)
170 3be4_A Adenylate kinase; malar 97.4 0.0001 3.6E-09 64.9 3.8 32 200-231 5-36 (217)
171 3jvv_A Twitching mobility prot 97.3 0.00026 8.9E-09 67.8 6.6 71 199-269 122-206 (356)
172 1vma_A Cell division protein F 97.3 0.0028 9.5E-08 59.3 13.4 73 198-270 102-197 (306)
173 3sr0_A Adenylate kinase; phosp 97.3 0.00015 5E-09 64.1 4.4 30 202-231 2-31 (206)
174 1jr3_D DNA polymerase III, del 97.3 0.00039 1.3E-08 65.4 7.6 119 198-337 16-145 (343)
175 2eyu_A Twitching motility prot 97.3 0.00034 1.2E-08 63.9 6.9 72 198-269 23-108 (261)
176 1nlf_A Regulatory protein REPA 97.3 0.0017 5.7E-08 59.3 11.3 27 198-224 28-54 (279)
177 2zts_A Putative uncharacterize 97.3 0.0024 8.1E-08 56.4 12.0 78 197-274 27-150 (251)
178 2pez_A Bifunctional 3'-phospho 97.3 0.00024 8.1E-09 60.4 5.1 38 199-236 4-44 (179)
179 1e4v_A Adenylate kinase; trans 97.3 0.00014 4.9E-09 63.7 3.6 30 202-231 2-31 (214)
180 2v54_A DTMP kinase, thymidylat 97.3 0.00023 7.8E-09 61.4 4.8 34 199-232 3-37 (204)
181 4gp7_A Metallophosphoesterase; 97.2 0.0009 3.1E-08 56.7 8.3 22 198-219 7-28 (171)
182 1cke_A CK, MSSA, protein (cyti 97.2 0.00026 8.9E-09 62.2 5.1 31 201-231 6-36 (227)
183 2r6a_A DNAB helicase, replicat 97.2 0.001 3.6E-08 65.4 9.9 36 197-232 200-239 (454)
184 3crm_A TRNA delta(2)-isopenten 97.2 0.0002 6.7E-09 67.7 4.4 35 200-234 5-39 (323)
185 2pbr_A DTMP kinase, thymidylat 97.2 0.00026 8.8E-09 60.4 4.7 31 202-232 2-35 (195)
186 3uie_A Adenylyl-sulfate kinase 97.2 0.00032 1.1E-08 60.9 5.2 39 198-236 23-64 (200)
187 2jaq_A Deoxyguanosine kinase; 97.2 0.00023 7.7E-09 61.2 4.2 29 202-230 2-30 (205)
188 2q6t_A DNAB replication FORK h 97.2 0.0012 4.1E-08 64.8 9.7 37 197-233 197-237 (444)
189 2xb4_A Adenylate kinase; ATP-b 97.2 0.00026 8.9E-09 62.7 4.4 30 202-231 2-31 (223)
190 3dm5_A SRP54, signal recogniti 97.2 0.0011 3.9E-08 65.1 9.3 73 199-271 99-194 (443)
191 1nks_A Adenylate kinase; therm 97.1 0.00016 5.5E-09 61.5 2.6 35 202-236 3-40 (194)
192 2if2_A Dephospho-COA kinase; a 97.1 0.00022 7.6E-09 61.7 3.5 30 202-232 3-32 (204)
193 2bbw_A Adenylate kinase 4, AK4 97.1 0.00034 1.2E-08 62.8 4.7 32 199-230 26-57 (246)
194 2fz4_A DNA repair protein RAD2 97.1 0.00056 1.9E-08 61.3 6.1 32 202-233 110-141 (237)
195 1g5t_A COB(I)alamin adenosyltr 97.1 0.003 1E-07 55.3 10.5 115 201-330 29-176 (196)
196 1ex7_A Guanylate kinase; subst 97.1 0.00054 1.8E-08 59.6 5.7 24 201-224 2-25 (186)
197 2ius_A DNA translocase FTSK; n 97.1 0.0046 1.6E-07 61.9 13.1 66 261-336 299-366 (512)
198 2z0h_A DTMP kinase, thymidylat 97.1 0.0004 1.4E-08 59.4 4.7 30 203-232 3-35 (197)
199 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00016 5.3E-09 69.2 2.3 30 201-230 25-54 (359)
200 3r20_A Cytidylate kinase; stru 97.1 0.00041 1.4E-08 62.5 4.8 33 199-231 8-40 (233)
201 3nwj_A ATSK2; P loop, shikimat 97.1 0.00034 1.2E-08 63.7 4.2 33 200-232 48-80 (250)
202 2ewv_A Twitching motility prot 97.1 0.00059 2E-08 65.6 6.0 72 198-269 134-219 (372)
203 2plr_A DTMP kinase, probable t 97.1 0.00054 1.8E-08 59.2 5.2 31 200-230 4-36 (213)
204 1uf9_A TT1252 protein; P-loop, 97.0 0.00035 1.2E-08 60.1 3.8 34 198-232 6-39 (203)
205 3ake_A Cytidylate kinase; CMP 97.0 0.00044 1.5E-08 59.7 4.4 31 202-232 4-34 (208)
206 4e22_A Cytidylate kinase; P-lo 97.0 0.00062 2.1E-08 61.6 5.4 32 199-230 26-57 (252)
207 2grj_A Dephospho-COA kinase; T 97.0 0.00039 1.4E-08 60.6 3.9 32 201-232 13-44 (192)
208 1jjv_A Dephospho-COA kinase; P 97.0 0.0004 1.4E-08 60.2 3.8 29 202-231 4-32 (206)
209 3a8t_A Adenylate isopentenyltr 97.0 0.00035 1.2E-08 66.3 3.6 35 200-234 40-74 (339)
210 2wwf_A Thymidilate kinase, put 97.0 0.00018 6.2E-09 62.5 1.5 29 199-227 9-37 (212)
211 3b6e_A Interferon-induced heli 97.0 0.0026 8.7E-08 54.8 8.9 24 201-224 49-72 (216)
212 2gxq_A Heat resistant RNA depe 97.0 0.0026 8.9E-08 54.7 8.6 24 200-223 38-62 (207)
213 1vht_A Dephospho-COA kinase; s 97.0 0.00054 1.9E-08 60.0 4.3 31 200-231 4-34 (218)
214 1nn5_A Similar to deoxythymidy 97.0 0.00023 7.8E-09 61.9 1.8 27 199-225 8-34 (215)
215 2yvu_A Probable adenylyl-sulfa 97.0 0.001 3.5E-08 56.7 5.8 39 198-236 11-52 (186)
216 2qor_A Guanylate kinase; phosp 96.9 0.00058 2E-08 59.4 4.3 28 198-225 10-37 (204)
217 1qde_A EIF4A, translation init 96.9 0.0071 2.4E-07 52.7 11.3 60 161-223 13-75 (224)
218 2h92_A Cytidylate kinase; ross 96.9 0.00062 2.1E-08 59.6 4.3 33 200-232 3-35 (219)
219 3zvl_A Bifunctional polynucleo 96.9 0.0011 3.7E-08 64.6 6.2 33 199-231 257-289 (416)
220 3foz_A TRNA delta(2)-isopenten 96.9 0.00072 2.5E-08 63.5 4.7 35 200-234 10-44 (316)
221 3sfz_A APAF-1, apoptotic pepti 96.9 0.0023 7.9E-08 69.4 9.4 49 163-223 122-170 (1249)
222 1q3t_A Cytidylate kinase; nucl 96.9 0.0009 3.1E-08 59.6 5.1 34 198-231 14-47 (236)
223 2qt1_A Nicotinamide riboside k 96.9 0.00048 1.6E-08 59.9 3.2 35 198-232 19-54 (207)
224 1uj2_A Uridine-cytidine kinase 96.8 0.00078 2.7E-08 60.7 4.4 29 199-227 21-49 (252)
225 1ltq_A Polynucleotide kinase; 96.8 0.00049 1.7E-08 63.3 3.1 31 201-231 3-34 (301)
226 2j41_A Guanylate kinase; GMP, 96.8 0.00068 2.3E-08 58.4 3.6 27 198-224 4-30 (207)
227 1m7g_A Adenylylsulfate kinase; 96.8 0.0009 3.1E-08 58.5 4.4 39 198-236 23-65 (211)
228 3bh0_A DNAB-like replicative h 96.8 0.0045 1.5E-07 57.8 9.4 36 197-232 65-103 (315)
229 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00041 1.4E-08 65.6 2.1 72 199-270 170-251 (330)
230 3kl4_A SRP54, signal recogniti 96.8 0.0026 8.9E-08 62.4 7.8 73 199-271 96-191 (433)
231 3exa_A TRNA delta(2)-isopenten 96.7 0.0011 3.7E-08 62.4 4.5 34 201-234 4-37 (322)
232 2a5y_B CED-4; apoptosis; HET: 96.7 0.0044 1.5E-07 62.3 9.4 44 168-222 131-174 (549)
233 2bdt_A BH3686; alpha-beta prot 96.7 0.0012 4E-08 56.5 4.4 25 202-226 4-28 (189)
234 2f6r_A COA synthase, bifunctio 96.7 0.00086 2.9E-08 61.7 3.8 31 200-231 75-105 (281)
235 4a1f_A DNAB helicase, replicat 96.7 0.028 9.7E-07 53.2 14.3 36 197-232 43-81 (338)
236 3d3q_A TRNA delta(2)-isopenten 96.7 0.00094 3.2E-08 63.4 4.0 33 201-233 8-40 (340)
237 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.8E-08 56.5 4.1 26 200-225 5-30 (180)
238 2px0_A Flagellar biosynthesis 96.7 0.0069 2.4E-07 56.2 9.6 36 198-233 103-142 (296)
239 3tr0_A Guanylate kinase, GMP k 96.7 0.0012 4.2E-08 56.7 4.2 26 199-224 6-31 (205)
240 3tau_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 58.0 3.8 28 198-225 6-33 (208)
241 1p9r_A General secretion pathw 96.6 0.0072 2.5E-07 58.9 9.7 70 199-268 166-245 (418)
242 2qmh_A HPR kinase/phosphorylas 96.6 0.00099 3.4E-08 58.6 3.0 35 199-234 33-67 (205)
243 2axn_A 6-phosphofructo-2-kinas 96.6 0.0059 2E-07 61.2 9.0 38 199-236 34-74 (520)
244 3asz_A Uridine kinase; cytidin 96.6 0.0012 4.1E-08 57.3 3.5 32 199-230 5-38 (211)
245 1w4r_A Thymidine kinase; type 96.5 0.01 3.5E-07 51.8 9.2 34 200-233 20-56 (195)
246 1t6n_A Probable ATP-dependent 96.5 0.033 1.1E-06 48.2 12.6 61 161-224 13-75 (220)
247 2pl3_A Probable ATP-dependent 96.5 0.015 5.1E-07 51.2 10.5 55 161-218 24-80 (236)
248 1lvg_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 57.0 3.6 26 199-224 3-28 (198)
249 3fdi_A Uncharacterized protein 96.5 0.0016 5.5E-08 57.0 4.0 30 201-230 7-36 (201)
250 1vt4_I APAF-1 related killer D 96.5 0.0055 1.9E-07 66.2 8.6 43 168-223 131-173 (1221)
251 2yhs_A FTSY, cell division pro 96.5 0.036 1.2E-06 55.1 14.0 27 198-224 291-317 (503)
252 3c8u_A Fructokinase; YP_612366 96.5 0.0015 5.2E-08 56.9 3.6 28 198-225 20-47 (208)
253 3a00_A Guanylate kinase, GMP k 96.5 0.0018 6.1E-08 55.5 3.7 25 201-225 2-26 (186)
254 3eph_A TRNA isopentenyltransfe 96.4 0.0018 6.1E-08 62.9 4.0 34 200-233 2-35 (409)
255 2oap_1 GSPE-2, type II secreti 96.4 0.0022 7.7E-08 64.2 4.8 72 198-269 258-343 (511)
256 1vec_A ATP-dependent RNA helic 96.4 0.014 4.9E-07 49.9 9.2 19 200-218 40-58 (206)
257 1rz3_A Hypothetical protein rb 96.4 0.0036 1.2E-07 54.2 5.4 36 198-233 20-58 (201)
258 3bgw_A DNAB-like replicative h 96.4 0.0072 2.5E-07 59.4 8.0 37 197-233 194-233 (444)
259 1hv8_A Putative ATP-dependent 96.4 0.0075 2.6E-07 56.0 7.8 61 161-223 5-67 (367)
260 1znw_A Guanylate kinase, GMP k 96.4 0.0024 8.1E-08 55.6 4.0 27 198-224 18-44 (207)
261 1g41_A Heat shock protein HSLU 96.3 0.0071 2.4E-07 59.4 7.7 90 246-337 239-339 (444)
262 2xau_A PRE-mRNA-splicing facto 96.3 0.01 3.5E-07 62.3 9.4 61 161-223 71-132 (773)
263 1q57_A DNA primase/helicase; d 96.3 0.011 3.9E-07 58.6 9.3 37 197-233 239-279 (503)
264 1z6g_A Guanylate kinase; struc 96.3 0.0025 8.5E-08 56.2 3.9 27 198-224 21-47 (218)
265 4b3f_X DNA-binding protein smu 96.3 0.018 6E-07 59.1 10.8 71 169-265 190-263 (646)
266 3gmt_A Adenylate kinase; ssgci 96.3 0.0021 7E-08 57.8 3.1 30 202-231 10-39 (230)
267 1htw_A HI0065; nucleotide-bind 96.2 0.0032 1.1E-07 53.0 4.0 27 198-224 31-57 (158)
268 3ney_A 55 kDa erythrocyte memb 96.2 0.0032 1.1E-07 55.1 4.0 27 199-225 18-44 (197)
269 1x6v_B Bifunctional 3'-phospho 96.2 0.0037 1.3E-07 64.0 4.9 38 199-236 51-91 (630)
270 3ber_A Probable ATP-dependent 96.2 0.014 4.8E-07 52.3 8.2 55 161-218 42-98 (249)
271 1tf7_A KAIC; homohexamer, hexa 96.2 0.016 5.5E-07 57.9 9.3 24 197-220 36-59 (525)
272 3b9q_A Chloroplast SRP recepto 96.1 0.0058 2E-07 57.0 5.7 27 198-224 98-124 (302)
273 3fe2_A Probable ATP-dependent 96.1 0.011 3.7E-07 52.5 7.3 56 160-218 27-84 (242)
274 3bor_A Human initiation factor 96.1 0.019 6.6E-07 50.7 8.7 55 161-218 29-85 (237)
275 2oxc_A Probable ATP-dependent 96.1 0.036 1.2E-06 48.7 10.4 54 161-217 23-78 (230)
276 3thx_B DNA mismatch repair pro 96.1 0.021 7.3E-07 60.9 10.4 24 199-222 672-695 (918)
277 4eaq_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 55.4 4.2 33 199-231 25-59 (229)
278 1s96_A Guanylate kinase, GMP k 96.1 0.004 1.4E-07 55.2 4.0 28 198-225 14-41 (219)
279 3e70_C DPA, signal recognition 96.1 0.013 4.5E-07 55.2 7.8 27 198-224 127-153 (328)
280 1zu4_A FTSY; GTPase, signal re 96.1 0.021 7.3E-07 53.5 9.2 35 198-232 103-140 (320)
281 1xti_A Probable ATP-dependent 96.0 0.1 3.5E-06 48.8 14.0 59 161-222 7-67 (391)
282 1gtv_A TMK, thymidylate kinase 96.0 0.0014 4.7E-08 56.9 0.7 24 202-225 2-25 (214)
283 1tf7_A KAIC; homohexamer, hexa 96.0 0.037 1.3E-06 55.2 11.3 76 197-272 278-384 (525)
284 2v9p_A Replication protein E1; 96.0 0.0043 1.5E-07 58.0 4.1 32 197-228 123-154 (305)
285 3pey_A ATP-dependent RNA helic 96.0 0.025 8.5E-07 52.9 9.3 59 161-220 4-64 (395)
286 3hdt_A Putative kinase; struct 96.0 0.0043 1.5E-07 55.3 3.8 30 201-230 15-44 (223)
287 2jeo_A Uridine-cytidine kinase 96.0 0.0045 1.5E-07 55.4 3.9 30 198-227 23-52 (245)
288 1m8p_A Sulfate adenylyltransfe 96.0 0.015 5.1E-07 59.0 8.1 39 199-237 395-437 (573)
289 3iuy_A Probable ATP-dependent 95.9 0.021 7.2E-07 49.9 8.1 19 200-218 57-75 (228)
290 3oiy_A Reverse gyrase helicase 95.9 0.018 6.1E-07 55.1 8.2 21 200-220 36-56 (414)
291 1j8m_F SRP54, signal recogniti 95.9 0.03 1E-06 51.9 9.5 71 200-270 98-191 (297)
292 1odf_A YGR205W, hypothetical 3 95.9 0.0086 2.9E-07 55.4 5.6 28 198-225 29-56 (290)
293 1q0u_A Bstdead; DEAD protein, 95.9 0.023 7.8E-07 49.4 8.1 55 162-219 4-60 (219)
294 1bif_A 6-phosphofructo-2-kinas 95.9 0.021 7.1E-07 56.2 8.6 27 199-225 38-64 (469)
295 2og2_A Putative signal recogni 95.9 0.0079 2.7E-07 57.5 5.4 27 198-224 155-181 (359)
296 3tqc_A Pantothenate kinase; bi 95.9 0.011 3.7E-07 55.7 6.1 27 199-225 91-117 (321)
297 1ls1_A Signal recognition part 95.8 0.023 7.9E-07 52.5 8.2 72 199-270 97-191 (295)
298 1cr0_A DNA primase/helicase; R 95.8 0.0049 1.7E-07 56.6 3.5 28 197-224 32-59 (296)
299 1xx6_A Thymidine kinase; NESG, 95.8 0.0087 3E-07 52.0 4.9 71 200-271 8-93 (191)
300 2j37_W Signal recognition part 95.8 0.017 5.8E-07 57.6 7.6 36 198-233 99-137 (504)
301 3thx_A DNA mismatch repair pro 95.7 0.041 1.4E-06 58.8 10.7 22 201-222 663-684 (934)
302 3lnc_A Guanylate kinase, GMP k 95.7 0.0031 1.1E-07 55.7 1.7 27 198-224 25-52 (231)
303 1sq5_A Pantothenate kinase; P- 95.7 0.0069 2.4E-07 56.3 4.1 28 198-225 78-105 (308)
304 1a7j_A Phosphoribulokinase; tr 95.7 0.0034 1.2E-07 58.1 2.0 26 200-225 5-30 (290)
305 2i3b_A HCR-ntpase, human cance 95.7 0.006 2.1E-07 52.8 3.5 23 202-224 3-25 (189)
306 1c9k_A COBU, adenosylcobinamid 95.7 0.0056 1.9E-07 52.8 3.2 32 203-235 2-33 (180)
307 3aez_A Pantothenate kinase; tr 95.7 0.0068 2.3E-07 56.7 4.0 27 198-224 88-114 (312)
308 1sky_E F1-ATPase, F1-ATP synth 95.7 0.1 3.5E-06 51.5 12.6 25 200-224 151-175 (473)
309 3tqf_A HPR(Ser) kinase; transf 95.7 0.0076 2.6E-07 51.8 3.8 30 199-229 15-44 (181)
310 2ged_A SR-beta, signal recogni 95.7 0.014 5E-07 49.1 5.7 27 198-224 46-72 (193)
311 3dkp_A Probable ATP-dependent 95.7 0.032 1.1E-06 49.2 8.2 18 200-217 66-83 (245)
312 2xxa_A Signal recognition part 95.6 0.027 9.3E-07 55.1 8.2 73 198-270 98-194 (433)
313 1rj9_A FTSY, signal recognitio 95.6 0.0078 2.7E-07 56.1 4.0 26 199-224 101-126 (304)
314 2ffh_A Protein (FFH); SRP54, s 95.6 0.06 2.1E-06 52.5 10.3 34 199-232 97-133 (425)
315 3tbk_A RIG-I helicase domain; 95.5 0.084 2.9E-06 51.8 11.5 23 201-223 20-42 (555)
316 3tif_A Uncharacterized ABC tra 95.5 0.0065 2.2E-07 54.4 2.9 27 198-224 29-55 (235)
317 2ocp_A DGK, deoxyguanosine kin 95.5 0.01 3.5E-07 52.8 4.2 26 200-225 2-27 (241)
318 2fwr_A DNA repair protein RAD2 95.5 0.014 4.8E-07 56.9 5.5 34 201-234 109-142 (472)
319 2va8_A SSO2462, SKI2-type heli 95.4 0.077 2.6E-06 54.7 11.2 58 161-220 7-66 (715)
320 1p5z_B DCK, deoxycytidine kina 95.4 0.0042 1.4E-07 56.1 1.5 32 198-229 22-54 (263)
321 2cbz_A Multidrug resistance-as 95.4 0.0072 2.4E-07 54.2 2.9 27 198-224 29-55 (237)
322 1s2m_A Putative ATP-dependent 95.4 0.038 1.3E-06 52.1 8.1 58 161-221 20-79 (400)
323 3fmo_B ATP-dependent RNA helic 95.4 0.08 2.7E-06 48.8 10.0 56 161-217 91-148 (300)
324 1wb9_A DNA mismatch repair pro 95.3 0.088 3E-06 55.4 11.3 24 200-223 607-630 (800)
325 3kta_A Chromosome segregation 95.3 0.012 4E-07 49.6 3.8 24 202-225 28-51 (182)
326 3eiq_A Eukaryotic initiation f 95.3 0.051 1.7E-06 51.4 8.6 57 161-220 39-97 (414)
327 2pcj_A ABC transporter, lipopr 95.3 0.0064 2.2E-07 54.0 2.0 27 198-224 28-54 (224)
328 1b0u_A Histidine permease; ABC 95.2 0.0088 3E-07 54.5 2.9 27 198-224 30-56 (262)
329 2onk_A Molybdate/tungstate ABC 95.2 0.01 3.5E-07 53.3 3.3 26 198-224 23-48 (240)
330 1xjc_A MOBB protein homolog; s 95.2 0.014 4.7E-07 49.8 3.8 24 201-224 5-28 (169)
331 1mv5_A LMRA, multidrug resista 95.1 0.009 3.1E-07 53.6 2.7 27 198-224 26-52 (243)
332 3p32_A Probable GTPase RV1496/ 95.1 0.036 1.2E-06 52.5 7.0 26 199-224 78-103 (355)
333 2zu0_C Probable ATP-dependent 95.1 0.012 4.1E-07 53.7 3.5 27 197-223 43-69 (267)
334 2j0s_A ATP-dependent RNA helic 95.1 0.11 3.9E-06 49.1 10.5 58 161-221 36-95 (410)
335 3b85_A Phosphate starvation-in 95.1 0.012 3.9E-07 51.8 3.2 24 200-223 22-45 (208)
336 3fvq_A Fe(3+) IONS import ATP- 95.1 0.01 3.5E-07 56.7 3.0 27 198-224 28-54 (359)
337 2gks_A Bifunctional SAT/APS ki 95.1 0.057 1.9E-06 54.4 8.6 38 200-237 372-412 (546)
338 2ghi_A Transport protein; mult 95.1 0.01 3.5E-07 53.9 2.9 27 198-224 44-70 (260)
339 4i1u_A Dephospho-COA kinase; s 95.1 0.016 5.4E-07 51.2 4.0 32 201-233 10-41 (210)
340 2olj_A Amino acid ABC transpor 95.0 0.011 3.7E-07 54.0 2.9 27 198-224 48-74 (263)
341 2ixe_A Antigen peptide transpo 95.0 0.011 3.7E-07 54.2 2.9 27 198-224 43-69 (271)
342 2f9l_A RAB11B, member RAS onco 95.0 0.013 4.5E-07 50.0 3.3 23 201-223 6-28 (199)
343 2zj8_A DNA helicase, putative 95.0 0.087 3E-06 54.4 10.1 20 199-218 38-57 (720)
344 1sgw_A Putative ABC transporte 95.0 0.0092 3.2E-07 52.7 2.3 27 198-224 33-59 (214)
345 1g6h_A High-affinity branched- 95.0 0.0092 3.2E-07 54.1 2.4 27 198-224 31-57 (257)
346 3cr8_A Sulfate adenylyltranfer 95.0 0.0084 2.9E-07 60.5 2.3 39 198-236 367-409 (552)
347 3k53_A Ferrous iron transport 95.0 0.023 7.9E-07 51.4 5.1 23 201-223 4-26 (271)
348 1np6_A Molybdopterin-guanine d 95.0 0.015 5E-07 49.8 3.4 25 200-224 6-30 (174)
349 2d2e_A SUFC protein; ABC-ATPas 95.0 0.011 3.9E-07 53.2 2.9 26 198-223 27-52 (250)
350 2pze_A Cystic fibrosis transme 95.0 0.0098 3.4E-07 52.9 2.4 27 198-224 32-58 (229)
351 4edh_A DTMP kinase, thymidylat 95.0 0.025 8.6E-07 49.8 5.0 32 200-231 6-40 (213)
352 2yyz_A Sugar ABC transporter, 95.0 0.013 4.5E-07 55.9 3.4 27 198-224 27-53 (359)
353 2it1_A 362AA long hypothetical 95.0 0.013 4.6E-07 56.0 3.5 27 198-224 27-53 (362)
354 3v9p_A DTMP kinase, thymidylat 95.0 0.022 7.6E-07 50.8 4.7 26 199-224 24-49 (227)
355 3fmp_B ATP-dependent RNA helic 95.0 0.12 4.3E-06 50.2 10.6 56 161-217 91-148 (479)
356 3rlf_A Maltose/maltodextrin im 95.0 0.013 4.6E-07 56.3 3.5 27 198-224 27-53 (381)
357 2ff7_A Alpha-hemolysin translo 94.9 0.0099 3.4E-07 53.6 2.4 27 198-224 33-59 (247)
358 3gfo_A Cobalt import ATP-bindi 94.9 0.01 3.5E-07 54.6 2.4 27 198-224 32-58 (275)
359 1oix_A RAS-related protein RAB 94.9 0.013 4.4E-07 49.9 3.0 23 202-224 31-53 (191)
360 1vpl_A ABC transporter, ATP-bi 94.9 0.012 4.2E-07 53.4 2.9 27 198-224 39-65 (256)
361 1ji0_A ABC transporter; ATP bi 94.9 0.01 3.5E-07 53.2 2.4 27 198-224 30-56 (240)
362 1v43_A Sugar-binding transport 94.9 0.014 4.8E-07 56.0 3.5 27 198-224 35-61 (372)
363 3sop_A Neuronal-specific septi 94.9 0.013 4.5E-07 53.6 3.1 23 202-224 4-26 (270)
364 2yz2_A Putative ABC transporte 94.9 0.012 4.2E-07 53.6 2.9 27 198-224 31-57 (266)
365 1nrj_B SR-beta, signal recogni 94.9 0.019 6.5E-07 49.5 4.0 26 199-224 11-36 (218)
366 1g8f_A Sulfate adenylyltransfe 94.9 0.013 4.5E-07 58.5 3.3 28 199-226 394-421 (511)
367 4g1u_C Hemin import ATP-bindin 94.9 0.011 3.7E-07 54.1 2.4 27 198-224 35-61 (266)
368 1lw7_A Transcriptional regulat 94.8 0.014 4.9E-07 55.4 3.3 28 200-227 170-197 (365)
369 1z47_A CYSA, putative ABC-tran 94.8 0.013 4.3E-07 56.0 2.9 27 198-224 39-65 (355)
370 2qi9_C Vitamin B12 import ATP- 94.8 0.011 3.8E-07 53.4 2.4 27 198-224 24-50 (249)
371 2wsm_A Hydrogenase expression/ 94.8 0.02 6.8E-07 49.6 4.0 25 200-224 30-54 (221)
372 2dyk_A GTP-binding protein; GT 94.8 0.018 6.1E-07 46.7 3.4 22 202-223 3-24 (161)
373 3tmk_A Thymidylate kinase; pho 94.8 0.032 1.1E-06 49.4 5.2 30 199-228 4-33 (216)
374 2gza_A Type IV secretion syste 94.8 0.013 4.4E-07 55.9 2.7 73 198-270 173-263 (361)
375 1wp9_A ATP-dependent RNA helic 94.8 0.12 4.2E-06 49.1 9.7 32 202-233 25-60 (494)
376 1g29_1 MALK, maltose transport 94.7 0.014 4.8E-07 56.0 2.9 27 198-224 27-53 (372)
377 3d31_A Sulfate/molybdate ABC t 94.7 0.012 4E-07 56.0 2.3 27 198-224 24-50 (348)
378 2ihy_A ABC transporter, ATP-bi 94.7 0.012 4.2E-07 54.0 2.4 27 198-224 45-71 (279)
379 2nq2_C Hypothetical ABC transp 94.7 0.013 4.4E-07 53.1 2.4 27 198-224 29-55 (253)
380 1z2a_A RAS-related protein RAB 94.7 0.019 6.6E-07 46.7 3.3 23 201-223 6-28 (168)
381 2v3c_C SRP54, signal recogniti 94.7 0.019 6.6E-07 56.1 3.8 35 199-233 98-135 (432)
382 4f4c_A Multidrug resistance pr 94.7 0.029 1E-06 62.2 5.7 29 197-225 441-469 (1321)
383 1kao_A RAP2A; GTP-binding prot 94.6 0.021 7.1E-07 46.3 3.4 23 201-223 4-26 (167)
384 2zej_A Dardarin, leucine-rich 94.6 0.016 5.4E-07 48.8 2.7 21 202-222 4-24 (184)
385 2i4i_A ATP-dependent RNA helic 94.6 0.23 7.9E-06 46.8 11.2 54 161-217 14-69 (417)
386 2c9o_A RUVB-like 1; hexameric 94.6 0.02 6.8E-07 56.2 3.7 63 260-338 296-370 (456)
387 3h1t_A Type I site-specific re 94.6 0.11 3.9E-06 52.1 9.4 25 200-224 198-222 (590)
388 2wji_A Ferrous iron transport 94.5 0.02 6.9E-07 47.3 3.1 22 202-223 5-26 (165)
389 2lkc_A Translation initiation 94.5 0.029 1E-06 46.3 4.2 25 198-222 6-30 (178)
390 3gd7_A Fusion complex of cysti 94.5 0.017 5.9E-07 55.7 3.0 28 197-224 44-71 (390)
391 2f1r_A Molybdopterin-guanine d 94.5 0.011 3.7E-07 50.4 1.4 25 201-225 3-27 (171)
392 2v6i_A RNA helicase; membrane, 94.5 0.032 1.1E-06 54.3 4.9 18 200-217 2-19 (431)
393 2j9r_A Thymidine kinase; TK1, 94.5 0.025 8.6E-07 50.1 3.8 30 203-232 31-63 (214)
394 1u8z_A RAS-related protein RAL 94.5 0.021 7.2E-07 46.3 3.1 24 200-223 4-27 (168)
395 1ek0_A Protein (GTP-binding pr 94.5 0.023 7.8E-07 46.3 3.3 24 201-224 4-27 (170)
396 3vkw_A Replicase large subunit 94.5 0.015 5E-07 57.2 2.4 24 200-223 161-184 (446)
397 2ce2_X GTPase HRAS; signaling 94.5 0.02 7E-07 46.2 2.9 23 202-224 5-27 (166)
398 1gm5_A RECG; helicase, replica 94.4 0.3 1E-05 51.3 12.4 34 199-232 388-424 (780)
399 2gk6_A Regulator of nonsense t 94.4 0.022 7.6E-07 58.2 3.8 23 202-224 197-219 (624)
400 2nzj_A GTP-binding protein REM 94.4 0.022 7.6E-07 46.8 3.2 23 201-223 5-27 (175)
401 1upt_A ARL1, ADP-ribosylation 94.4 0.028 9.7E-07 45.9 3.8 26 198-223 5-30 (171)
402 1z0j_A RAB-22, RAS-related pro 94.4 0.024 8.3E-07 46.2 3.4 24 201-224 7-30 (170)
403 1ewq_A DNA mismatch repair pro 94.4 0.074 2.5E-06 55.7 7.8 24 200-223 576-599 (765)
404 2p67_A LAO/AO transport system 94.4 0.099 3.4E-06 49.1 7.9 27 198-224 54-80 (341)
405 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.025 8.5E-07 46.7 3.4 23 201-223 8-30 (177)
406 1oxx_K GLCV, glucose, ABC tran 94.4 0.012 4.1E-07 56.0 1.6 27 198-224 29-55 (353)
407 1wrb_A DJVLGB; RNA helicase, D 94.4 0.095 3.3E-06 46.4 7.5 18 201-218 61-78 (253)
408 2hf9_A Probable hydrogenase ni 94.4 0.047 1.6E-06 47.3 5.3 25 200-224 38-62 (226)
409 1z08_A RAS-related protein RAB 94.3 0.026 8.8E-07 46.1 3.3 24 200-223 6-29 (170)
410 3ly5_A ATP-dependent RNA helic 94.3 0.047 1.6E-06 49.1 5.3 19 201-219 92-110 (262)
411 1ky3_A GTP-binding protein YPT 94.3 0.027 9.1E-07 46.5 3.4 25 199-223 7-31 (182)
412 3lv8_A DTMP kinase, thymidylat 94.3 0.027 9.1E-07 50.6 3.5 25 200-224 27-51 (236)
413 3iby_A Ferrous iron transport 94.3 0.048 1.6E-06 49.2 5.3 22 202-223 3-24 (256)
414 2bbs_A Cystic fibrosis transme 94.2 0.019 6.4E-07 53.2 2.5 27 198-224 62-88 (290)
415 1r2q_A RAS-related protein RAB 94.2 0.028 9.6E-07 45.8 3.3 23 201-223 7-29 (170)
416 3ld9_A DTMP kinase, thymidylat 94.2 0.032 1.1E-06 49.7 3.9 28 199-226 20-47 (223)
417 2pjz_A Hypothetical protein ST 94.2 0.021 7.3E-07 52.0 2.8 25 200-224 30-54 (263)
418 1g16_A RAS-related protein SEC 94.2 0.025 8.4E-07 46.2 2.9 23 201-223 4-26 (170)
419 1c1y_A RAS-related protein RAP 94.2 0.029 9.8E-07 45.6 3.3 23 201-223 4-26 (167)
420 2erx_A GTP-binding protein DI- 94.2 0.027 9.3E-07 45.9 3.2 23 201-223 4-26 (172)
421 3q85_A GTP-binding protein REM 94.2 0.027 9.2E-07 46.1 3.1 21 202-222 4-24 (169)
422 2wjg_A FEOB, ferrous iron tran 94.2 0.026 9.1E-07 47.2 3.1 23 201-223 8-30 (188)
423 1r8s_A ADP-ribosylation factor 94.2 0.031 1.1E-06 45.5 3.5 22 202-223 2-23 (164)
424 2qm8_A GTPase/ATPase; G protei 94.1 0.033 1.1E-06 52.5 4.0 27 198-224 53-79 (337)
425 3bc1_A RAS-related protein RAB 94.1 0.029 1E-06 46.7 3.3 23 201-223 12-34 (195)
426 4ag6_A VIRB4 ATPase, type IV s 94.1 0.05 1.7E-06 52.0 5.2 26 199-224 34-59 (392)
427 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.028 9.7E-07 55.4 3.5 27 198-224 136-162 (460)
428 3a1s_A Iron(II) transport prot 94.1 0.063 2.1E-06 48.4 5.6 22 201-222 6-27 (258)
429 1m2o_B GTP-binding protein SAR 94.0 0.029 9.9E-07 47.6 3.2 25 199-223 22-46 (190)
430 3tui_C Methionine import ATP-b 94.0 0.03 1E-06 53.6 3.5 27 198-224 52-78 (366)
431 3q72_A GTP-binding protein RAD 94.0 0.025 8.6E-07 46.1 2.6 21 202-222 4-24 (166)
432 2hxs_A RAB-26, RAS-related pro 94.0 0.033 1.1E-06 45.9 3.3 24 200-223 6-29 (178)
433 2ykg_A Probable ATP-dependent 94.0 0.18 6.1E-06 51.5 9.5 22 201-222 29-50 (696)
434 4ddu_A Reverse gyrase; topoiso 94.0 0.2 6.9E-06 54.5 10.3 21 200-220 93-113 (1104)
435 3nh6_A ATP-binding cassette SU 94.0 0.018 6E-07 53.8 1.8 28 197-224 77-104 (306)
436 4a2p_A RIG-I, retinoic acid in 94.0 0.28 9.6E-06 48.1 10.6 23 201-223 23-45 (556)
437 4dsu_A GTPase KRAS, isoform 2B 94.0 0.034 1.2E-06 46.3 3.4 24 201-224 5-28 (189)
438 1z0f_A RAB14, member RAS oncog 93.9 0.034 1.2E-06 45.8 3.3 24 201-224 16-39 (179)
439 3clv_A RAB5 protein, putative; 93.9 0.039 1.3E-06 46.2 3.7 24 200-223 7-30 (208)
440 2oil_A CATX-8, RAS-related pro 93.9 0.034 1.2E-06 46.8 3.3 23 201-223 26-48 (193)
441 2gj8_A MNME, tRNA modification 93.9 0.03 1E-06 46.7 2.9 24 200-223 4-27 (172)
442 2y8e_A RAB-protein 6, GH09086P 93.9 0.03 1E-06 46.0 2.9 23 201-223 15-37 (179)
443 3fho_A ATP-dependent RNA helic 93.9 0.33 1.1E-05 47.9 11.0 20 200-219 158-177 (508)
444 3con_A GTPase NRAS; structural 93.9 0.034 1.2E-06 46.6 3.3 24 201-224 22-45 (190)
445 1w36_D RECD, exodeoxyribonucle 93.9 0.031 1.1E-06 56.9 3.5 24 201-224 165-188 (608)
446 2efe_B Small GTP-binding prote 93.9 0.036 1.2E-06 45.9 3.3 23 201-223 13-35 (181)
447 2a9k_A RAS-related protein RAL 93.9 0.035 1.2E-06 46.0 3.3 24 200-223 18-41 (187)
448 1pui_A ENGB, probable GTP-bind 93.9 0.019 6.3E-07 49.2 1.6 26 198-223 24-49 (210)
449 3tw8_B RAS-related protein RAB 93.9 0.032 1.1E-06 46.0 3.0 23 200-222 9-31 (181)
450 2fn4_A P23, RAS-related protei 93.8 0.033 1.1E-06 45.9 3.0 23 201-223 10-32 (181)
451 3i8s_A Ferrous iron transport 93.8 0.09 3.1E-06 47.8 6.2 23 201-223 4-26 (274)
452 1m7b_A RND3/RHOE small GTP-bin 93.8 0.032 1.1E-06 46.8 2.9 24 200-223 7-30 (184)
453 2db3_A ATP-dependent RNA helic 93.8 0.19 6.3E-06 48.6 8.8 53 161-216 55-109 (434)
454 2vp4_A Deoxynucleoside kinase; 93.8 0.035 1.2E-06 49.0 3.3 26 198-223 18-43 (230)
455 1f6b_A SAR1; gtpases, N-termin 93.7 0.039 1.3E-06 47.1 3.4 24 199-222 24-47 (198)
456 2dpy_A FLII, flagellum-specifi 93.7 0.056 1.9E-06 52.9 4.9 31 197-227 154-184 (438)
457 4f4c_A Multidrug resistance pr 93.7 0.06 2.1E-06 59.7 5.7 28 197-224 1102-1129(1321)
458 4tmk_A Protein (thymidylate ki 93.7 0.041 1.4E-06 48.4 3.6 24 201-224 4-27 (213)
459 2bme_A RAB4A, RAS-related prot 93.7 0.034 1.2E-06 46.3 2.9 23 201-223 11-33 (186)
460 2g6b_A RAS-related protein RAB 93.7 0.04 1.4E-06 45.5 3.3 24 200-223 10-33 (180)
461 3kkq_A RAS-related protein M-R 93.7 0.04 1.4E-06 45.8 3.3 24 200-223 18-41 (183)
462 3t1o_A Gliding protein MGLA; G 93.7 0.037 1.3E-06 46.3 3.2 24 201-224 15-38 (198)
463 2o8b_B DNA mismatch repair pro 93.7 0.37 1.3E-05 52.0 11.6 22 200-221 789-810 (1022)
464 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.04 1.4E-06 45.7 3.3 23 201-223 6-28 (186)
465 1ko7_A HPR kinase/phosphatase; 93.6 0.045 1.5E-06 51.2 3.9 30 199-229 143-172 (314)
466 2p5s_A RAS and EF-hand domain 93.6 0.043 1.5E-06 46.6 3.5 25 199-223 27-51 (199)
467 1oyw_A RECQ helicase, ATP-depe 93.6 0.077 2.6E-06 52.9 5.8 25 200-224 40-64 (523)
468 2gf9_A RAS-related protein RAB 93.6 0.042 1.4E-06 46.2 3.3 24 201-224 23-46 (189)
469 3bwd_D RAC-like GTP-binding pr 93.6 0.052 1.8E-06 44.9 3.8 24 200-223 8-31 (182)
470 1svi_A GTP-binding protein YSX 93.6 0.04 1.4E-06 46.3 3.2 25 199-223 22-46 (195)
471 1f2t_A RAD50 ABC-ATPase; DNA d 93.5 0.052 1.8E-06 44.8 3.7 23 202-224 25-47 (149)
472 2qtf_A Protein HFLX, GTP-bindi 93.5 0.11 3.8E-06 49.4 6.5 22 202-223 181-202 (364)
473 3l9o_A ATP-dependent RNA helic 93.5 0.12 4.1E-06 56.3 7.6 23 200-222 199-221 (1108)
474 3ihw_A Centg3; RAS, centaurin, 93.5 0.044 1.5E-06 46.2 3.3 23 201-223 21-43 (184)
475 2atv_A RERG, RAS-like estrogen 93.5 0.049 1.7E-06 46.1 3.7 25 199-223 27-51 (196)
476 2orv_A Thymidine kinase; TP4A 93.5 0.12 4.2E-06 46.2 6.3 32 201-232 20-54 (234)
477 3c5c_A RAS-like protein 12; GD 93.5 0.046 1.6E-06 46.1 3.4 23 201-223 22-44 (187)
478 3tkl_A RAS-related protein RAB 93.5 0.045 1.5E-06 46.0 3.3 24 201-224 17-40 (196)
479 2wjy_A Regulator of nonsense t 93.5 0.043 1.5E-06 57.8 3.8 23 202-224 373-395 (800)
480 2bov_A RAla, RAS-related prote 93.4 0.046 1.6E-06 46.3 3.3 24 200-223 14-37 (206)
481 2cxx_A Probable GTP-binding pr 93.4 0.036 1.2E-06 46.3 2.6 22 202-223 3-24 (190)
482 2qag_B Septin-6, protein NEDD5 93.4 0.044 1.5E-06 53.5 3.4 26 198-223 38-65 (427)
483 2iwr_A Centaurin gamma 1; ANK 93.4 0.035 1.2E-06 46.0 2.4 24 200-223 7-30 (178)
484 1x3s_A RAS-related protein RAB 93.4 0.048 1.6E-06 45.7 3.3 23 201-223 16-38 (195)
485 1z06_A RAS-related protein RAB 93.4 0.049 1.7E-06 45.7 3.4 24 200-223 20-43 (189)
486 3dz8_A RAS-related protein RAB 93.3 0.045 1.5E-06 46.1 3.1 24 201-224 24-47 (191)
487 1vg8_A RAS-related protein RAB 93.3 0.049 1.7E-06 46.2 3.4 26 199-224 7-32 (207)
488 1zd9_A ADP-ribosylation factor 93.3 0.049 1.7E-06 45.8 3.3 24 200-223 22-45 (188)
489 1dek_A Deoxynucleoside monopho 93.3 0.035 1.2E-06 49.9 2.5 29 202-230 3-31 (241)
490 1ksh_A ARF-like protein 2; sma 93.3 0.05 1.7E-06 45.4 3.3 25 199-223 17-41 (186)
491 2obl_A ESCN; ATPase, hydrolase 93.3 0.075 2.6E-06 50.3 4.9 30 198-227 69-98 (347)
492 2fg5_A RAB-22B, RAS-related pr 93.3 0.045 1.5E-06 46.3 3.0 23 201-223 24-46 (192)
493 2a5j_A RAS-related protein RAB 93.3 0.051 1.7E-06 45.8 3.3 23 201-223 22-44 (191)
494 3reg_A RHO-like small GTPase; 93.3 0.051 1.7E-06 45.9 3.3 25 200-224 23-47 (194)
495 1knx_A Probable HPR(Ser) kinas 93.3 0.05 1.7E-06 50.9 3.5 31 199-230 146-176 (312)
496 3t5g_A GTP-binding protein RHE 93.2 0.046 1.6E-06 45.3 2.9 23 201-223 7-29 (181)
497 1zbd_A Rabphilin-3A; G protein 93.2 0.049 1.7E-06 46.2 3.1 23 201-223 9-31 (203)
498 1tq4_A IIGP1, interferon-induc 93.2 0.054 1.8E-06 52.7 3.7 24 200-223 69-92 (413)
499 2rcn_A Probable GTPase ENGC; Y 93.2 0.054 1.8E-06 51.6 3.7 26 200-225 215-240 (358)
500 4hlc_A DTMP kinase, thymidylat 93.2 0.087 3E-06 46.0 4.8 29 203-231 5-35 (205)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-40 Score=321.23 Aligned_cols=180 Identities=33% Similarity=0.594 Sum_probs=167.2
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
.+.|+++|+||+|++++|++|++.+.+|+.+|++|...| +.+|+|+|||||||||||++|+++|++++++|+.++++++
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 356789999999999999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
.++|+|++++.++.+|..|+..+||||||||+|.+++.+... ......+.+++|+..|||+... .+++||+|||+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNr 296 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNR 296 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESC
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCC
Confidence 999999999999999999999999999999999999887543 2345677889999999998764 46999999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|+.||+|++| ||++.++|++|+.++|
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 9999999999 9999999999998876
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=311.77 Aligned_cols=179 Identities=36% Similarity=0.626 Sum_probs=165.7
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++|+||+|++++|++|.+.+.+|+.+|+.|...| +.+|+|||||||||||||++|+++|++++++|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 56789999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|+|++++.++.+|..|+..+||||||||+|.+++.|... ......+.+.+|++.+|++... .+++||+|||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCS
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCCh
Confidence 99999999999999999999999999999999999887433 2334566788999999988754 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.||+|++| ||++.|+|++||.++|
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R 358 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTK 358 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHH
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHH
Confidence 999999999 9999999999998876
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=312.33 Aligned_cols=179 Identities=36% Similarity=0.649 Sum_probs=165.8
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++|+||+|++++|++|.+.+.+|+.+|+.|.+.| +.+|+|||||||||||||++|+|+|++++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 45789999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCch---HHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDH---EATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~---~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|+|++++.++.+|..|+..+||||||||+|.+++.|..... ....+.+.+|++.||++... .+++||+|||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence 9999999999999999999999999999999999988854432 34556778999999998764 459999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.||+|++| ||++.++|++|+.++|
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 999999999 9999999999998876
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-38 Score=309.75 Aligned_cols=179 Identities=34% Similarity=0.599 Sum_probs=165.8
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.|+++|+||+|++++|++|++.+.+|+.+|+.|...| +.+|+|||||||||||||++|+++|++++++|+.++++++.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC-CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 45789999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|+|++++.++.+|..|+..+||||||||+|.++..|... ......+.+.+++..||+.... .+++||+|||+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrp 358 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRP 358 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCT
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCc
Confidence 99999999999999999999999999999999999887543 2345566788999999998764 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.||+|++| ||++.++|++|+.++|
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred ccCChhhhccccccEEEEeCCcCHHHH
Confidence 999999999 9999999999998876
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=311.75 Aligned_cols=179 Identities=38% Similarity=0.641 Sum_probs=165.5
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++|+||+|++++|++|.+.+.+|+.+|++|...| +.+|+|||||||||||||++|+++|++++++|+.++++++.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 45789999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|+|++++.++.+|..|+..+||||||||+|.+++.|... ......+.+++|+..|||+... .+++||+|||+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp 330 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRP 330 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESST
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCc
Confidence 99999999999999999999999999999999999887433 2344567788999999998764 459999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.||+|++| ||++.|+|++|+.++|
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred hhhCHHHhCCCccceeeecCCcCHHHH
Confidence 999999999 6999999999998876
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.3e-38 Score=327.56 Aligned_cols=256 Identities=32% Similarity=0.527 Sum_probs=200.6
Q ss_pred HHHHHHHhhhhhhhhhhcccCCcccchhhccCCCCCc-hhhHHHHHHHHHHHHHhc-Ccc---------cCCCCCHHHHH
Q psy15087 81 FKKYQELFVDRTTNKLMATHQDTNHVQCYFSDPSGTS-TFNVLLAITTAYEKLKKV-GLD---------VGNKLNTHELK 149 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~---------~~~~~~~~~~~ 149 (341)
...+.+++.....+..+..++|...++..+..++|+- ...+.+|...|..+.... ... ....++..++.
T Consensus 374 ~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~ 453 (806)
T 3cf2_A 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFR 453 (806)
T ss_dssp HHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHH
Confidence 3455666666555555677888888998888777762 223555555554443321 111 12345667777
Q ss_pred HhcCccCCC--------CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHH
Q psy15087 150 IAANLIVPE--------EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 150 ~~~~~v~p~--------~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA 221 (341)
.+...+.|. .++++|++|+|++++|++|.+.+.+|+.+|+.|.+.| ..+++|+|||||||||||++|+++|
T Consensus 454 ~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 454 WALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp HHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHH
T ss_pred HHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCCCCchHHHHHHH
Confidence 777777663 4678999999999999999999999999999999988 6899999999999999999999999
Q ss_pred HHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCC
Q psy15087 222 KEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 222 ~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~ 298 (341)
.+++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|.+++.|.. .......+++++||.+|||+.
T Consensus 533 ~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred HHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999988753 345567889999999999997
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 299 TDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
.. .+|+||+|||+|+.||+|++| ||++.++|++|+.++|
T Consensus 613 ~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 613 TK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp SS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred CC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 64 459999999999999999999 9999999999999887
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=305.88 Aligned_cols=179 Identities=34% Similarity=0.647 Sum_probs=165.4
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++++|+||+|++++|++|.+.+..|+.+|+.|...| +.+|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 45789999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|+|++++.++.+|..|+..+||||||||+|.+++.|.. .......+++++|++.|||+... .+++||+|||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCCh
Confidence 9999999999999999999999999999999999988743 23345677899999999998764 459999999999
Q ss_pred CCCcHHHHc--cCCceEEec-CCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIK-LPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~-lP~~e~R 339 (341)
+.||+|++| ||++.|+++ +|+.++|
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 999999999 999999996 8998776
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.1e-34 Score=300.01 Aligned_cols=178 Identities=38% Similarity=0.628 Sum_probs=168.7
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
.+.++|+||+|+++++++|++.+..|+.+|++|...| +.+|+|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 3578999999999999999999999999999999999 689999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
+|+|++++.++.+|..|+.++||||||||+|.+++.+.....+...+++++|+..|+++... .+++||+|||+++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 99999999999999999999999999999999999888777777888999999999998764 3599999999999999
Q ss_pred HHHHc--cCCceEEecCCCcCCC
Q psy15087 319 PAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++++| ||++.+++++|+.++|
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHH
T ss_pred HHHhCCcccceEEecCCCCHHHH
Confidence 99999 9999999999998876
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.98 E-value=8.6e-32 Score=256.65 Aligned_cols=179 Identities=45% Similarity=0.696 Sum_probs=164.4
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEeechhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-NVSFINLDISTL 236 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i~~s~l 236 (341)
+.++++|+||+|++++|+.|.+.+.+|+.+++.|... ..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4568999999999999999999999999999998742 4778999999999999999999999999 899999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD 316 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ 316 (341)
..++.|+.++.++.+|..++..+|+||||||+|.+.+.+.....+...++.++++..++++... ..+++||+|||+++.
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWV 161 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCccc
Confidence 9999999999999999999999999999999999998887777778888999999999988643 357999999999999
Q ss_pred CcHHHHccCCceEEecCCCcCCC
Q psy15087 317 IDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 317 ld~al~rRf~~~i~i~lP~~e~R 339 (341)
+|++++|||+..+++++|+.++|
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r 184 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHAR 184 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHH
T ss_pred CCHHHHhhcCeEEEeCCcCHHHH
Confidence 99999999999999999998765
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=3.3e-31 Score=252.14 Aligned_cols=181 Identities=41% Similarity=0.714 Sum_probs=160.7
Q ss_pred CCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 156 VPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 156 ~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
..+.++++|++|+|++.+++.|.+.+..|+.+++.+...+ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC--CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC--CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 3456789999999999999999999999999999887643 77899999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
+...+.|+.+..++.+|..++...|+||||||+|.+.+.+.........++.+.++..+++.... ..+++||+|||+++
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~ 165 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPW 165 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChh
Confidence 99999999999999999999999999999999999988776655566778889999999987543 34799999999999
Q ss_pred CCcHHHHccCCceEEecCCCcCCC
Q psy15087 316 DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 316 ~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
.+|++++|||+..+++++|+.++|
T Consensus 166 ~ld~al~~Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 166 QLDSAIRRRFERRIYIPLPDLAAR 189 (322)
T ss_dssp GSCHHHHHHCCEEEECCCCCHHHH
T ss_pred hCCHHHHcccCeEEEeCCCCHHHH
Confidence 999999999999999999998876
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=1.5e-30 Score=245.47 Aligned_cols=183 Identities=39% Similarity=0.705 Sum_probs=162.1
Q ss_pred ccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 154 ~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.+..+.++.+|+||+|++.+++.|.+.+..|+.+++.|...+ ..++.++||+||||||||++|+++|.+++.+|+.+++
T Consensus 4 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 4 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 344566789999999999999999999999999999999888 5788999999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
+++.+.++|+.+..++.+|..+....|+||||||+|.+...++.. ......++++.++..++++.. ..+++||+|
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~a 160 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGA 160 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEe
Confidence 999999999999999999999999999999999999998765321 112334567888999998764 346999999
Q ss_pred eCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 311 TNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 311 TN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
||+++.+|++++| ||+..+++++|+.++|
T Consensus 161 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 161 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred cCCccccChHHhcCCccceEEecCCcCHHHH
Confidence 9999999999999 9999999999998776
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=2.4e-30 Score=249.75 Aligned_cols=183 Identities=42% Similarity=0.710 Sum_probs=153.4
Q ss_pred ccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 154 ~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.+....++.+|++|+|++.+++.|.+.+..|+.+++.|... ..+++++||+||||||||++|+++|++++.+|+.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 44456678999999999999999999999999999998763 3788999999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
+++...+.|+.+..++.+|..+....|+||||||+|.+.+.+.........++.++|+..+++.... ..+++||+|||+
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~ 196 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNI 196 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESC
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCC
Confidence 9999999999999999999999999999999999999988776666667788889999999987543 346999999999
Q ss_pred CCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
++.+|++++|||+..+++++|+.++|
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDLAAR 222 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCHHHH
T ss_pred cccCCHHHHcccCEEEEeCCcCHHHH
Confidence 99999999999999999999998765
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.3e-29 Score=251.73 Aligned_cols=184 Identities=45% Similarity=0.687 Sum_probs=156.1
Q ss_pred CccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEe
Q psy15087 153 NLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-NVSFINL 231 (341)
Q Consensus 153 ~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i 231 (341)
..+..+.++.+|+||+|++.+++.|.+.+..|+.+++.|... ..+++++||+||||||||++|+++|.++ +.+|+.+
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 344556778999999999999999999999999999988743 3678999999999999999999999999 8999999
Q ss_pred echhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 232 DISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 232 ~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT 311 (341)
+++++...|.|+.+..++.+|..+....|+||||||+|.+.+.+.........++.+.|+..++++... ..+++||+||
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~at 278 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGAT 278 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecC
Confidence 999999999999999999999999999999999999999988877666677888899999999987543 3579999999
Q ss_pred CCCCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 312 NRPDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 312 N~~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
|+++.+|++++|||+..+++++|+.++|
T Consensus 279 n~~~~ld~al~rRf~~~i~i~~P~~~~r 306 (444)
T 2zan_A 279 NIPWVLDSAIRRRFEKRIYIPLPEAHAR 306 (444)
T ss_dssp SCGGGSCHHHHTTCCEEEECCCCCHHHH
T ss_pred CCccccCHHHHhhcceEEEeCCcCHHHH
Confidence 9999999999999999999999998765
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=236.55 Aligned_cols=178 Identities=40% Similarity=0.704 Sum_probs=147.8
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
.++++|+||+|++++|++|.+.+..|+.+++.++..+ ...++|++|+||||||||+|++++|.+++.+++.+++.++..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~-l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG-LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTT-CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578999999999999999999999999999999988 578889999999999999999999999999999999999988
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
.+.++.++.++.+|+.+....|+++|+||+|.+...+.........++.++++..|++.... ..++++++||+|+.||
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCC
Confidence 88888888999999999888999999999999876553322223345678899999987653 4589999999999999
Q ss_pred HHHHc--cCCceEEecCCCcCCC
Q psy15087 319 PAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++++| ||++.+++++|+.++|
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHH
T ss_pred HhhcCcccCCeEEEeCCcCHHHH
Confidence 99999 9999999999998776
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=237.71 Aligned_cols=184 Identities=42% Similarity=0.714 Sum_probs=158.6
Q ss_pred ccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 154 ~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.+....++.+|++|+|++.+++.|.+.+..|+.+++.+...+ .+++++||+||||||||++|+++|.+++.+|+.+++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR--GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc--CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 344455688999999999999999999999999998876654 678899999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
+++...+.|+....++.+|..+....|+||||||+|.+.+.+.........++++.++..+++.......+++||+|||+
T Consensus 151 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 151 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp GGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999887766666677888899999999877555567999999999
Q ss_pred CCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
++.++++++|||+..+++++|+.++|
T Consensus 231 ~~~l~~~l~~Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 231 PQEIDEAARRRLVKRLYIPLPEASAR 256 (357)
T ss_dssp GGGBCHHHHTTCCEEEECCCCCHHHH
T ss_pred hhhCCHHHHhhCceEEEeCCcCHHHH
Confidence 99999999999999999999998765
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=2.1e-28 Score=229.00 Aligned_cols=186 Identities=42% Similarity=0.711 Sum_probs=158.0
Q ss_pred cCccCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 152 ANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 152 ~~~v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
...+..+.++.+|++|+|++.+++.|.+.+..++.+++.+...+ .++.++||+||||||||++|+++|.+++.+|+.+
T Consensus 8 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR--APAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp HTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG--CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC--CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34455566789999999999999999999999999998887654 5788999999999999999999999999999999
Q ss_pred echhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC-CCCEEEEEE
Q psy15087 232 DISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK-NIDIIIMGA 310 (341)
Q Consensus 232 ~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~-~~~viVIat 310 (341)
+++.+...+.|.....++.+|..+....|+||||||+|.+...++....+...++.+.++..+++..... ..+++||++
T Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 86 SAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp ESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred eHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 9999999999999999999999999999999999999999887765544455667788888888765432 246999999
Q ss_pred eCCCCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 311 TNRPDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 311 TN~~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
||+++.+++++++||+..+++++|+.++|
T Consensus 166 tn~~~~l~~~l~~R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 166 TNRPQELDEAALRRFTKRVYVSLPDEQTR 194 (297)
T ss_dssp ESCGGGBCHHHHHHCCEEEECCCCCHHHH
T ss_pred cCChhhCCHHHHhhCCeEEEeCCcCHHHH
Confidence 99999999999999999999999998765
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=238.30 Aligned_cols=183 Identities=41% Similarity=0.707 Sum_probs=149.9
Q ss_pred cCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 155 v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
+.....+.+|++|+|++.+++.|.+.+..++.+++.+...+ .++.++||+||||||||++|+++|.+++.+|+.++++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR--APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC--CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 34455688999999999999999999999999888887665 5688999999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 235 TLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++...+.|.....++.+|..+....|+||||||||.+...+.........+++..|+..+++.......+++||+|||++
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998877666666678888999999998776555679999999999
Q ss_pred CCCcHHHHccCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
+.++++++|||...+++++|+.++|
T Consensus 263 ~~l~~~l~~R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 263 QELDEAVLRRFIKRVYVSLPNEETR 287 (389)
T ss_dssp GGCCHHHHTTCCEEEECCCCCHHHH
T ss_pred hhcCHHHHcCcceEEEcCCcCHHHH
Confidence 9999999999999999999998765
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=7.2e-28 Score=240.46 Aligned_cols=182 Identities=37% Similarity=0.625 Sum_probs=156.7
Q ss_pred ccCCC-CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 154 LIVPE-EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 154 ~v~p~-~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
++.+. .+..+|+||+|+++++++|.+.+.. +..+..|...+ ...|+|+||+||||||||++|+++|.+++.+|+.++
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g-~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIG-ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTT-CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 34455 6788999999999999999998875 67888888888 578899999999999999999999999999999999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy15087 233 ISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMG 309 (341)
Q Consensus 233 ~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIa 309 (341)
++++...+.|.....++.+|..+....|+||||||+|.+.+.++. +......+.++.|+..++++... .+++||+
T Consensus 82 ~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIa 159 (476)
T 2ce7_A 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMA 159 (476)
T ss_dssp GGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEE
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEE
Confidence 999999999988889999999999999999999999999877643 22334556788999999877543 4699999
Q ss_pred EeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 310 ATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 310 tTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+||+++.+|++++| ||+..+.+++|+.++|
T Consensus 160 aTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 160 ATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 99999999999998 9999999999998776
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.3e-27 Score=220.45 Aligned_cols=179 Identities=41% Similarity=0.675 Sum_probs=157.6
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.++.+|++|+|++.+++.|.+.+..++..++.+...+ ..++.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG-IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC-CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 44578999999999999999999999999999999988 57889999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc---hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD---HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~---~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
..+.|.....+..+|..+....|+||||||+|.+.+.+.... .......+..++..+++.... .+++||+|||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~~ 166 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRP 166 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSCG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCc
Confidence 999999999999999999999999999999999987765432 223445566677777766543 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.++++++| ||+..+.++.|+.++|
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 999999999 9999999999998765
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=1.2e-27 Score=239.98 Aligned_cols=176 Identities=38% Similarity=0.647 Sum_probs=163.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
..+|++|+|++.+++.|.+.+..++.+++.|...+ ..++.++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56899999999999999999999999999999988 57889999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHH
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPA 320 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~a 320 (341)
+|+....++.+|..+....|++|||||||.+.+.++....+...+++..|+..+++... ..+++||+|||+++.++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 99999999999999999999999999999999888766667788889999999997754 3469999999999999999
Q ss_pred HHc--cCCceEEecCCCcCCC
Q psy15087 321 IAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 321 l~r--Rf~~~i~i~lP~~e~R 339 (341)
++| ||+..+++++|+.++|
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHH
T ss_pred HhCCCcCceEEEeCCCCHHHH
Confidence 999 9999999999998776
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=2.9e-27 Score=217.10 Aligned_cols=179 Identities=36% Similarity=0.633 Sum_probs=151.5
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
+..++.+|++|+|++.+++.|.+.+.. +.+++.+...+ ...+.++||+||||||||++|+++|..++.+++.++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 455688999999999999999988765 77777777766 4678899999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
...+.|.....++.+|..+....|+++||||+|.+...++.. ......+.++.++..+++... ..+++||+|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~ 159 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNR 159 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESC
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCC
Confidence 998999999999999999998899999999999998766432 223344667888888988754 346999999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
++.+|++++| ||+..+.+++|+.++|
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 9999999999 9999999999998776
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=217.20 Aligned_cols=176 Identities=35% Similarity=0.597 Sum_probs=138.0
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
++.+|++|+|++.+++.|.+.+.. +..++.+...| ...+.++||+||||||||++|+++|++++.+++.++++.+...
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLG-AKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV 78 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh
Confidence 367899999999999999998776 77788888777 5788999999999999999999999999999999999999888
Q ss_pred hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc----hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 240 LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD----HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~----~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
+.+.....++.+|..+....|+||||||+|.+...+.... .......+..++..+++... ..++++|+|||.++
T Consensus 79 ~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 79 IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRAD 156 (262)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGG
T ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChh
Confidence 8888888899999999988999999999999977654321 12233456777888877654 34699999999999
Q ss_pred CCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 316 DIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 316 ~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
.+|++++| ||+..+++++|+.++|
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r 182 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQER 182 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHH
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHH
Confidence 99999999 9999999999998775
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=4.1e-27 Score=217.05 Aligned_cols=181 Identities=36% Similarity=0.582 Sum_probs=148.8
Q ss_pred CCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 156 VPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 156 ~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
.++.++..|++|+|++.+++.|.+.+.. +.+++.+...+ ...+.++||+||||||||++|+++|.+++.+++.++++.
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 79 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSS 79 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHS-CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHH
Confidence 4566788999999999999999998765 78888888877 477889999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCch----HHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 236 LTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDH----EATAQLKSIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~----~~~~~i~~~ll~~ld~~~~~~~~~viVIatT 311 (341)
+...+.|.....++.+|..+....|+||||||+|.+...+..+.. ....+.++.++..+++.... ..+++||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~tt 158 (268)
T 2r62_A 80 FIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAAT 158 (268)
T ss_dssp TTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECB
T ss_pred HHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEec
Confidence 988888888777888999999889999999999999765432110 01112345667777765432 3458999999
Q ss_pred CCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 312 NRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 312 N~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|.++.+|++++| ||+..+++++|+.++|
T Consensus 159 n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r 188 (268)
T 2r62_A 159 NRPEILDPALMRPGRFDRQVLVDKPDFNGR 188 (268)
T ss_dssp SCCTTSCGGGGSSSSSCCCCBCCCCCTTTH
T ss_pred CCchhcCHhHcCCCCCCeEEEecCcCHHHH
Confidence 999999999999 9999999999999886
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=5.1e-27 Score=248.36 Aligned_cols=179 Identities=40% Similarity=0.723 Sum_probs=159.0
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.+...|++++|++.+++.|.+.+.+++.+++.+...+ ..++.++||+||||||||+||+++|..++.+|+.++++++.
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcC-CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 34578999999999999999999999999999888877 57888999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC
Q psy15087 238 DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP 314 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~ 314 (341)
++|+|+.+..++.+|+.++...||||||||+|.+...+... ......+++++|+..|++.... .+++||+|||++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~ 626 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRP 626 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSC
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCc
Confidence 99999999999999999999999999999999998877543 2346778899999999988653 469999999999
Q ss_pred CCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 315 DDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 315 ~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.||++++| ||+..+++++|+.++|
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred ccCCHHHhCccccCceeecCCCCHHHH
Confidence 999999999 9999999999998876
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=7.8e-25 Score=200.54 Aligned_cols=181 Identities=38% Similarity=0.635 Sum_probs=149.5
Q ss_pred cCCCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 155 v~p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
+.++.++.+|++++|+++++.++++.+.. +..+..+...+ ...++|++|+||||||||+|++++|..++.+++.+++.
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~-~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTT-CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 34667789999999999999999988765 56677787777 47788899999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe
Q psy15087 235 TLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT 311 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT 311 (341)
.+...+.+.....+..+|+.+....|+++|+||+|.+...+.. .......+.++.++..+++... ...++++++|
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t 161 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAAT 161 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEcc
Confidence 8888777777778889999998788999999999999766542 1223445667888888887654 2358899999
Q ss_pred CCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 312 NRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 312 N~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|.|+.+|++++| ||+..+++++|+.++|
T Consensus 162 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 999999999999 9999999999998765
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1.6e-25 Score=224.70 Aligned_cols=176 Identities=39% Similarity=0.642 Sum_probs=153.5
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~ 239 (341)
++.+|+||+|++++++++.+.+.. +..+..+...+ ...++|+||+||||||||+||+++|.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg-~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTS-CCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 689999999999999999998765 67777888777 4778899999999999999999999999999999999999888
Q ss_pred hcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCC---CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCC
Q psy15087 240 LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD 316 (341)
Q Consensus 240 ~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~---~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ 316 (341)
+.|.....++.+|+.+....|+|+||||+|.+...++. .......+.+++++..+++.... ..++++++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChhh
Confidence 88888888999999988888999999999999876543 22344556778899999987643 45899999999999
Q ss_pred CcHHHHc--cCCceEEecCCCcCCC
Q psy15087 317 IDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 317 ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+|++++| ||++.+.|++|+.++|
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred cCcccccccccceEEecCCCCHHHH
Confidence 9999999 9999999999998765
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.7e-23 Score=194.44 Aligned_cols=179 Identities=39% Similarity=0.633 Sum_probs=148.2
Q ss_pred CCCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 157 PEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 157 p~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
.+.++.+|++++|++++++++.+.+.. +..+..+...+ ...++|++|+||||||||+|+++++..++.+++.+++..+
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~-~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 344689999999999999999988765 56677777777 4677889999999999999999999999999999999988
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
...+.+.....+..+|+.+....|+++|+||+|.+...+... ......+.+..++..+++... ...++++++||.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~ 187 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNR 187 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESC
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCC
Confidence 887777777788899999988889999999999987654321 123345567788888887654 235899999999
Q ss_pred CCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 314 PDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
|+.+|++++| ||+..+++++|+.++|
T Consensus 188 p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 188 PDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp TTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred chhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 9999999999 9999999999998765
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=4.6e-24 Score=225.77 Aligned_cols=178 Identities=37% Similarity=0.627 Sum_probs=163.4
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~ 238 (341)
..+++|++|+|++.+++.|.+.+..|+.+++.|..++ +.++.++||+||||||||+||+++|.+++.+++.++++++..
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSC-CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 3468999999999999999999999999999999888 588999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 239 KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 239 ~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
.+.++....++.+|+.+....|+++||||+|.+.+.+.....+...++...++..+++.... ..+++|++||+++.+|
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcC
Confidence 99999999999999999999999999999999998876666667788889999999988654 4699999999999999
Q ss_pred HHHHc--cCCceEEecCCCcCCC
Q psy15087 319 PAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+++++ ||+..+.+++|+.++|
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r 377 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHH
T ss_pred HHHhcccccccccccCCCCHHHH
Confidence 99999 9999999999998765
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=6.4e-24 Score=199.56 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=105.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHH----HhcCCeEEEEcccchhh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLA----EKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a----~~~~p~II~IDEiD~l~ 272 (341)
.++|.++|||||||||||++|+++|++++.+|+.++++++.+.+.|..+..++.+|..+ +...|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 47789999999999999999999999999999999999999999999999999999888 57789999999999998
Q ss_pred hcCCCCc--hHHHHHHHHHHHHHhcCCC---------CCCCCCEEEEEEeCCCCCCcHHHHc--cCCceEEecCCCcCCC
Q psy15087 273 RSRSSSD--HEATAQLKSIFLSKWDGLT---------TDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLSSF 339 (341)
Q Consensus 273 ~~~~~~~--~~~~~~i~~~ll~~ld~~~---------~~~~~~viVIatTN~~~~ld~al~r--Rf~~~i~i~lP~~e~R 339 (341)
+.+.+.. ......+.+.|+..+|+.. .....+++||+|||+++.+|++++| ||+..++ +|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 7543221 1134456788888887543 1123469999999999999999998 7776665 6777665
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=7.2e-23 Score=203.63 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=126.9
Q ss_pred CcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechhh
Q psy15087 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--VSFINLDISTL 236 (341)
Q Consensus 159 ~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~l 236 (341)
.+...|++++|++++++.+...+... ..+ ..+++++||+||||||||++|+++|++++ .+|+.++++++
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSK-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTT-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhC-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 34667999999999999998876542 123 35678999999999999999999999999 99999999999
Q ss_pred hhhhcCCchHHHHHHHHHH---HhcCCeEEEEcccchhhhcCCCCchHHHH-------------------HHHHHHHHHh
Q psy15087 237 TDKLYGESPKLATAIFSLA---EKIQPCIIFIDEIDSLLRSRSSSDHEATA-------------------QLKSIFLSKW 294 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a---~~~~p~II~IDEiD~l~~~~~~~~~~~~~-------------------~i~~~ll~~l 294 (341)
..++.|+.+. +...|..+ +...|+||||||+|.+++.+......... ++...++..+
T Consensus 102 ~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l 180 (456)
T 2c9o_A 102 YSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180 (456)
T ss_dssp CCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHH
T ss_pred HHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHH
Confidence 9999999887 89999998 77889999999999999887543211110 1112344444
Q ss_pred cCCCCCCCCCEEEEEEeCCCCCCcHHHHc--cCCc--eEEecCCCc
Q psy15087 295 DGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPK--KYHIKLPLL 336 (341)
Q Consensus 295 d~~~~~~~~~viVIatTN~~~~ld~al~r--Rf~~--~i~i~lP~~ 336 (341)
+......+..++|++|||+++.+|++++| ||+. .+++++|+.
T Consensus 181 ~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp HHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred hhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 42222223346667999999999999987 9988 678888865
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=3.3e-20 Score=173.76 Aligned_cols=164 Identities=18% Similarity=0.275 Sum_probs=126.7
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCC--CCCceEEEECCCCCCHHHHHHHHHHHc-------CCcEEEeechhh
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLL--KPPKGILLYGPPGCGKTMIAKATAKEA-------NVSFINLDISTL 236 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~--~~~~gvLL~GPpGtGKT~LAkalA~~l-------~~~~i~i~~s~l 236 (341)
+|+|++.+++.|.+.+..+. .+..+...|+. .++.++||+||||||||++|+++|+.+ ..+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988754 35555555532 345579999999999999999999988 348999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-
Q psy15087 237 TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD- 315 (341)
Q Consensus 237 ~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~- 315 (341)
...++|.....+..+|..+ .++||||||+|.+.+.++.. ......++.|+..++.. ..++++|+++|.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~--~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENN----RDDLVVILAGYADRM 181 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc--cccHHHHHHHHHHHhcC----CCCEEEEEeCChHHH
Confidence 9999999888888888776 45899999999997554321 12334556677776642 34588899998753
Q ss_pred ----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 316 ----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 316 ----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
.+++++++||+..+.++.|+.+++
T Consensus 182 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 182 ENFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp HHHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred HHHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 257899999999999999987654
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=1e-19 Score=179.67 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=86.9
Q ss_pred Ccccc-cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-
Q psy15087 161 NGSWK-NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD- 238 (341)
Q Consensus 161 ~~~~~-dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~- 238 (341)
...|+ +|+|++++|+.|..++..+++++..+...+...+++++||+||||||||++|+++|..++.+|+.++++.+.+
T Consensus 10 ~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~ 89 (444)
T 1g41_A 10 VSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89 (444)
T ss_dssp HHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhccc
Confidence 34444 5899999999999999888777765554332246789999999999999999999999999999999999888
Q ss_pred hhcCC-chHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE-eCCCCC
Q psy15087 239 KLYGE-SPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA-TNRPDD 316 (341)
Q Consensus 239 ~~~g~-~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat-TN~~~~ 316 (341)
.|+|. .+..++.+|..+... +++||++.+... .......+++++|+..||++..... + +++ ||+++.
T Consensus 90 g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~--v--~a~~TN~~~~ 158 (444)
T 1g41_A 90 GYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVE--N--HDSHSSTRQA 158 (444)
T ss_dssp --CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------
T ss_pred ceeeccHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhccccccc--c--ccccccCHHH
Confidence 58885 788999999988773 458888876432 3344567889999999999865332 2 454 999999
Q ss_pred CcHHHHc--cCCceEEecCCCcC
Q psy15087 317 IDPAIAR--RMPKKYHIKLPLLS 337 (341)
Q Consensus 317 ld~al~r--Rf~~~i~i~lP~~e 337 (341)
||++++| ||++.++|++|+..
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp -----------------------
T ss_pred HHHHHHcCCCcceEEEEcCCCCc
Confidence 9999999 99999999999976
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=2.2e-19 Score=167.46 Aligned_cols=173 Identities=26% Similarity=0.389 Sum_probs=121.8
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh-hhcCCc
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD-KLYGES 244 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~-~~~g~~ 244 (341)
+|+|++.+++.|...+..++..............+.++||+||||||||++|+++|+.++.+++.++++.+.. .+.|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4899999999999888765433322111000145679999999999999999999999999999999998865 444432
Q ss_pred -hHHHHHHHHHH-----HhcCCeEEEEcccchhhhcCCCCchHHH-HHHHHHHHHHhcCCCC------CCCCCEEEEEEe
Q psy15087 245 -PKLATAIFSLA-----EKIQPCIIFIDEIDSLLRSRSSSDHEAT-AQLKSIFLSKWDGLTT------DKNIDIIIMGAT 311 (341)
Q Consensus 245 -~~~i~~lf~~a-----~~~~p~II~IDEiD~l~~~~~~~~~~~~-~~i~~~ll~~ld~~~~------~~~~~viVIatT 311 (341)
...++.++..+ ....++||||||+|.+............ ..+.+.|+..+++... ....++++|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34455555422 1123689999999999876543333333 3346777877775421 012357888884
Q ss_pred ----CCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 312 ----NRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 312 ----N~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+.+..+++++++||+..+.++.|+.++
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~ 206 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAAD 206 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHH
Confidence 567789999999999889999988764
No 34
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=3.2e-19 Score=153.34 Aligned_cols=155 Identities=21% Similarity=0.326 Sum_probs=110.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 56789999999998888876543 346789999999999999999999986 788899
Q ss_pred eechhhhh--hhcCCchHHHHHHHHHHH-hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy15087 231 LDISTLTD--KLYGESPKLATAIFSLAE-KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIII 307 (341)
Q Consensus 231 i~~s~l~~--~~~g~~~~~i~~lf~~a~-~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viV 307 (341)
+++..+.. .+.+.....+..++..+. ...++||+|||+|.+.+.+...........+..++ + ..++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---H------TTSCCE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---c------cCCeEE
Confidence 99887753 334444556667776553 34578999999999975432111111112222222 2 134778
Q ss_pred EEEeCCCC-----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 308 MGATNRPD-----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 308 IatTN~~~-----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
|++||.++ .+++++++||. .+.++.|+.++|
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~ 190 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDT 190 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHH
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHH
Confidence 88888876 78999999998 599999998765
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.77 E-value=2.4e-19 Score=190.87 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=162.4
Q ss_pred cCCCcchhhHHHHHHHHHHHhcccCCCCcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhhhhhhhcc
Q psy15087 22 QKPTYSIYKFEGFITFLYKQYSITHTRMSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRTTNKLMAT 99 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (341)
++.+.|...++..+.....+.+.......++.++ ...++..+...|...-..|....|++ +.++.+... .
T Consensus 51 ~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlL---lall~~~~~--~--- 122 (854)
T 1qvr_A 51 EKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLV---LALAEATPG--L--- 122 (854)
T ss_dssp HTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHH---HHHHHHSTT--S---
T ss_pred HHcCCCHHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHH---HHHHhcccc--c---
Confidence 5678899999999998888776543222234444 78888888888888888899988987 555544321 0
Q ss_pred cCCcccchhhccCCCCCchhhHHHHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCcHHHHHHHHH
Q psy15087 100 HQDTNHVQCYFSDPSGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQ 179 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~~L~~ 179 (341)
++...+...+....+......... ......|.+.+.+ +++. ..+..|++++|.+..++.+.+
T Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----l~~~------------~r~~~ld~viGr~~~i~~l~~ 184 (854)
T 1qvr_A 123 -PGLEALKGALKELRGGRTVQTEHA-ESTYNALEQYGID----LTRL------------AAEGKLDPVIGRDEEIRRVIQ 184 (854)
T ss_dssp -CCHHHHHHHHTSSCSCCSSCSSCC-CCCCSHHHHHEEE----HHHH------------HHTTCSCCCCSCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhccccccccccc-cccchhHHHHHHh----HHHH------------HhcCCCcccCCcHHHHHHHHH
Confidence 222223222222211100000000 0000112222211 2111 126789999999998888877
Q ss_pred HhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhh--hhhcCCchHH
Q psy15087 180 SVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLT--DKLYGESPKL 247 (341)
Q Consensus 180 ~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~--~~~~g~~~~~ 247 (341)
.+.. ..+.++||+||||||||++|+++|..+ +.+++.++++.+. ..+.|+.+..
T Consensus 185 ~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~ 250 (854)
T 1qvr_A 185 ILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEER 250 (854)
T ss_dssp HHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHH
T ss_pred HHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHH
Confidence 6643 345689999999999999999999987 8899999998886 4677888888
Q ss_pred HHHHHHHHHhc-CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC----CCcHHHH
Q psy15087 248 ATAIFSLAEKI-QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD----DIDPAIA 322 (341)
Q Consensus 248 i~~lf~~a~~~-~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~----~ld~al~ 322 (341)
+..++..+... .++||||||+|.+.+.....+.. ...+.+...+. +..+.+|++||.++ .++++++
T Consensus 251 l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~---~~~~~L~~~l~------~~~i~~I~at~~~~~~~~~~d~aL~ 321 (854)
T 1qvr_A 251 LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAV---DAGNMLKPALA------RGELRLIGATTLDEYREIEKDPALE 321 (854)
T ss_dssp HHHHHHHHHTTCSSEEEEECCC----------------------HHHHH------TTCCCEEEEECHHHHHHHTTCTTTC
T ss_pred HHHHHHHHHhcCCCeEEEEecHHHHhccCCccchH---HHHHHHHHHHh------CCCeEEEEecCchHHhhhccCHHHH
Confidence 99999988775 68999999999997654332211 12222333332 23577899998764 4799999
Q ss_pred ccCCceEEecCCCcCCC
Q psy15087 323 RRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 323 rRf~~~i~i~lP~~e~R 339 (341)
|||.. +.++.|+.+++
T Consensus 322 rRf~~-i~l~~p~~~e~ 337 (854)
T 1qvr_A 322 RRFQP-VYVDEPTVEET 337 (854)
T ss_dssp SCCCC-EEECCCCHHHH
T ss_pred hCCce-EEeCCCCHHHH
Confidence 99986 99999987653
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.77 E-value=1.2e-18 Score=149.65 Aligned_cols=151 Identities=21% Similarity=0.340 Sum_probs=108.8
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEE
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFIN 230 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~ 230 (341)
+..|++++|.+...+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 55788999999988888776533 345689999999999999999999987 788888
Q ss_pred eechhhhhh--hcCCchHHHHHHHHHHHhc-CCeEEEEcccchhhhcCC-CCchHHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy15087 231 LDISTLTDK--LYGESPKLATAIFSLAEKI-QPCIIFIDEIDSLLRSRS-SSDHEATAQLKSIFLSKWDGLTTDKNIDII 306 (341)
Q Consensus 231 i~~s~l~~~--~~g~~~~~i~~lf~~a~~~-~p~II~IDEiD~l~~~~~-~~~~~~~~~i~~~ll~~ld~~~~~~~~~vi 306 (341)
+++..+... +.+.....+..++..+... .+.+|||||+|.+.+.+. ...... +.+.+...++ ..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~---~~~~l~~~~~------~~~~~ 154 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD---AGNILKPMLA------RGELR 154 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC---THHHHHHHHH------TTCSC
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH---HHHHHHHHHh------cCCee
Confidence 888776532 3344445566777666655 678999999999975433 111111 1222222222 13578
Q ss_pred EEEEeCCCC-----CCcHHHHccCCceEEecCCC
Q psy15087 307 IMGATNRPD-----DIDPAIARRMPKKYHIKLPL 335 (341)
Q Consensus 307 VIatTN~~~-----~ld~al~rRf~~~i~i~lP~ 335 (341)
+|+++|.+. .+++++++||.. +.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 899998765 689999999985 8898885
No 37
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=4.9e-19 Score=176.65 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=160.7
Q ss_pred cCCCcchhhHHHHHHHHHHHhcccCCCCcceeeCchhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh--hhhhhcc
Q psy15087 22 QKPTYSIYKFEGFITFLYKQYSITHTRMSEVTVDSDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT--TNKLMAT 99 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 99 (341)
++.+.|...++..+.....+.+..... -.++.....++..+...|...-..|....|++ +.++.+.. ...++..
T Consensus 51 ~~~gvd~~~l~~~l~~~l~~~~~~~~~-~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLL---laLl~~~~~~a~~iL~~ 126 (468)
T 3pxg_A 51 QALGLGSEKIQKEVESLIGRGQEMSQT-IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL---LGLIREGEGVAARVLNN 126 (468)
T ss_dssp HHHTCCHHHHHHHHHTTSCCCCTTCSS-CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHH---HHHHHTCCSHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhcccCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHH---HHHHhcccchHHHHHHH
Confidence 345778888888887765544322111 12344488889998888888888898888988 66665542 2233333
Q ss_pred -cCCcccchhhccCCCCCchhhHHH---HHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCcHHHHH
Q psy15087 100 -HQDTNHVQCYFSDPSGTSTFNVLL---AITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKK 175 (341)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~k~ 175 (341)
.++.+.+...+....|........ ........+.+.+.+ +++ ...+..|++|+|.+..++
T Consensus 127 ~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~------------~~r~~~ld~iiGr~~~i~ 190 (468)
T 3pxg_A 127 LGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARD----LTA------------IAKEDSLDPVIGRSKEIQ 190 (468)
T ss_dssp TTCCHHHHHHHHHTTCCCCCTTC-----CCSTHHHHHHSSCCB----HHH------------HTTSSCSCCCCCCHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCcccccccCcCCccCchHHHHHHHH----HHH------------HHhcCCCCCccCcHHHHH
Confidence 455554443333222221100000 000011122222221 111 122567899999999999
Q ss_pred HHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhhhhhcCCch
Q psy15087 176 ELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLTDKLYGESP 245 (341)
Q Consensus 176 ~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~~~~~g~~~ 245 (341)
.+...+.. ....++||+||||||||++|+++|..+ +.+++.++++ ..+.|+.+
T Consensus 191 ~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e 253 (468)
T 3pxg_A 191 RVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFE 253 (468)
T ss_dssp HHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------C
T ss_pred HHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHH
Confidence 98887654 345689999999999999999999996 7889999887 66778888
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCcHH
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DIDPA 320 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld~a 320 (341)
..++.+|..+....++||||| +. . ...+.|+..++ +..+.+|++||.++ .++++
T Consensus 254 ~~~~~~~~~~~~~~~~iLfiD------~~-----~----~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 254 DRLKKVMDEIRQAGNIILFID------AA-----I----DASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred HHHHHHHHHHHhcCCeEEEEe------Cc-----h----hHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHH
Confidence 889999999998889999999 00 0 11223333232 24689999999987 68999
Q ss_pred HHccCCceEEecCCCcCC
Q psy15087 321 IARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 321 l~rRf~~~i~i~lP~~e~ 338 (341)
++|||.. +.|+.|+.++
T Consensus 313 l~~Rf~~-i~v~~p~~e~ 329 (468)
T 3pxg_A 313 LERRFQP-IQVDQPSVDE 329 (468)
T ss_dssp HHHSEEE-EECCCCCHHH
T ss_pred HHHhCcc-ceeCCCCHHH
Confidence 9999975 9999998765
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.76 E-value=2.3e-18 Score=165.79 Aligned_cols=172 Identities=24% Similarity=0.343 Sum_probs=121.8
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhh-cCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh-hcCCc
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKE-SGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK-LYGES 244 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~-~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~-~~g~~ 244 (341)
|+|++.+++.|...+............ .+...++.++||+||||||||++|+++|..++.+|+.++++.+... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 799999999999988654332221110 1112367899999999999999999999999999999999988754 66664
Q ss_pred -hHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCC---chHHHHHHHHHHHHHhcCCCC-----------------
Q psy15087 245 -PKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSS---DHEATAQLKSIFLSKWDGLTT----------------- 299 (341)
Q Consensus 245 -~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~---~~~~~~~i~~~ll~~ld~~~~----------------- 299 (341)
...+..++..+ ....++||||||+|.+...+... .......+++.|+..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 45566676654 34467999999999998765443 222334578889998885310
Q ss_pred CCCCCEEEEEEeCCC----------CC-----------------------------------CcHHHHccCCceEEecCC
Q psy15087 300 DKNIDIIIMGATNRP----------DD-----------------------------------IDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 300 ~~~~~viVIatTN~~----------~~-----------------------------------ld~al~rRf~~~i~i~lP 334 (341)
-...++++|+++|.. .. +.+++++||+..+.+..|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 012345666666642 11 789999999988888888
Q ss_pred CcCC
Q psy15087 335 LLSS 338 (341)
Q Consensus 335 ~~e~ 338 (341)
+.++
T Consensus 257 ~~~~ 260 (363)
T 3hws_A 257 SEEA 260 (363)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=2.9e-18 Score=158.37 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=114.1
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCc
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGES 244 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~ 244 (341)
+.++|.+...+.+....... .+.+...+ ..++.++||+||||||||++|+++|+.++.+|+.+++++ .+.|..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~ 105 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFS 105 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCC
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccC-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCc
Confidence 45778877766665532111 11222222 356789999999999999999999999999999998875 234443
Q ss_pred h----HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcH-
Q psy15087 245 P----KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDP- 319 (341)
Q Consensus 245 ~----~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~- 319 (341)
. ..++.+|..+....+++|||||+|.+.+.+... ......+++.|...+++.... ..+++||+|||.++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~-~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCST-TCEEEEEEEESCHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCC-CCCEEEEEecCChhhcchh
Confidence 2 456778888887788999999999997654322 123345566676777665432 346889999999988887
Q ss_pred HHHccCCceEEecCCCcCC
Q psy15087 320 AIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 320 al~rRf~~~i~i~lP~~e~ 338 (341)
.+++||...+.+ |+..+
T Consensus 184 ~l~~rf~~~i~~--p~l~~ 200 (272)
T 1d2n_A 184 EMLNAFSTTIHV--PNIAT 200 (272)
T ss_dssp TCTTTSSEEEEC--CCEEE
T ss_pred hhhcccceEEcC--CCccH
Confidence 677899766555 55443
No 40
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=9.8e-19 Score=183.90 Aligned_cols=257 Identities=16% Similarity=0.186 Sum_probs=162.5
Q ss_pred cCCCcchhhHHHHHHHHHHHhcccCCCCcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh--hhhhh
Q psy15087 22 QKPTYSIYKFEGFITFLYKQYSITHTRMSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT--TNKLM 97 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 97 (341)
++.+.|...++..+.....+.+... .++..+ ...++..+...|...-..|....|++ +.++.+.. ...++
T Consensus 51 ~~~gvd~~~l~~~l~~~l~~~~~~~---~~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlL---lall~~~~~~a~~~L 124 (758)
T 3pxi_A 51 QALGLGSEKIQKEVESLIGRGQEMS---QTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL---LGLIREGEGVAARVL 124 (758)
T ss_dssp HHHTCCHHHHHHHHHTTSCCCCTTC---SSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHH---HHHHHTCCSHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhccCCCCC---CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHH---HHHHhcCCcHHHHHH
Confidence 4557888888888877665544321 233344 88889888888888888899999988 66665543 22344
Q ss_pred cc-cCCcccchhhccCCCCCchhhHHH---HHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCcccccccCcHHH
Q psy15087 98 AT-HQDTNHVQCYFSDPSGTSTFNVLL---AITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHI 173 (341)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~dI~G~~~~ 173 (341)
.. .++.+.+...+....|........ ........+.+.+.+ +++ ...+..+++++|.+..
T Consensus 125 ~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~------------~~~~~~ld~iiG~~~~ 188 (758)
T 3pxi_A 125 NNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARD----LTA------------IAKEDSLDPVIGRSKE 188 (758)
T ss_dssp HHTTCCHHHHHHHHHTTCCCCCTTC-----CCSTHHHHHHSSCCB----HHH------------HTTSSCSCCCCCCHHH
T ss_pred HHcCCCHHHHHHHHHHHhcCCcccccccccccchhhhHHHHHHHH----HHH------------HHhhCCCCCccCchHH
Confidence 33 455555444333322221100000 000011122222211 111 1225678899999999
Q ss_pred HHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhhhhhhcCC
Q psy15087 174 KKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTLTDKLYGE 243 (341)
Q Consensus 174 k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l~~~~~g~ 243 (341)
++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.+++ ..+|.|+
T Consensus 189 i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~ 251 (758)
T 3pxi_A 189 IQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGE 251 (758)
T ss_dssp HHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred HHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccch
Confidence 9999887654 445689999999999999999999997 788888887 5567888
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC-----CCc
Q psy15087 244 SPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD-----DID 318 (341)
Q Consensus 244 ~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~-----~ld 318 (341)
.+..++.+|..+....++||||| + . ....+.|+..++ +..+.+|++||..+ .+|
T Consensus 252 ~e~~l~~~~~~~~~~~~~iLfiD------~-----~----~~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 252 FEDRLKKVMDEIRQAGNIILFID------A-----A----IDASNILKPSLA------RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT------SSSCEEEEECCTTTTHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc------C-----c----hhHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhcc
Confidence 89999999999999899999999 0 0 011233333332 34589999999988 799
Q ss_pred HHHHccCCceEEecCCCcCCC
Q psy15087 319 PAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 319 ~al~rRf~~~i~i~lP~~e~R 339 (341)
++++|||. .+.|+.|+.+++
T Consensus 311 ~al~rRf~-~i~v~~p~~~~~ 330 (758)
T 3pxi_A 311 AALERRFQ-PIQVDQPSVDES 330 (758)
T ss_dssp SHHHHSEE-EEECCCCCHHHH
T ss_pred HHHHhhCc-EEEeCCCCHHHH
Confidence 99999994 599999987654
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.75 E-value=1.3e-17 Score=158.31 Aligned_cols=151 Identities=22% Similarity=0.290 Sum_probs=112.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+.+|++++|++.+++.+...+..... . ..++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 45899999999999999988765321 1 14567899999999999999999999999999999987653
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC--------------CCCCCEE
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT--------------DKNIDII 306 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~--------------~~~~~vi 306 (341)
....+...+.. ...+++|||||+|.+.. ..+..|+..++.... ....+++
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 12223333322 34679999999999842 234455555543221 0011489
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
+|++||+...+++++++||+..+.++.|+.+++
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL 189 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence 999999999999999999988899999987653
No 42
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=1.3e-17 Score=175.33 Aligned_cols=276 Identities=19% Similarity=0.208 Sum_probs=173.5
Q ss_pred cCCCcchhhHHHHHHHHHHH-hcccCCC--CcceeeC--chhHHHHHHhhhhhhhhhhhhhhhHHHHHHHHhhhhh--hh
Q psy15087 22 QKPTYSIYKFEGFITFLYKQ-YSITHTR--MSEVTVD--SDSYLMHFGKFATTAIVSYFAVNFFFKKYQELFVDRT--TN 94 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (341)
++.+.|...++..+.....+ .+..... ..++..+ ...++.++...|...-..|....|++ +.++.+.. ..
T Consensus 45 ~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlL---lall~~~~~~a~ 121 (758)
T 1r6b_X 45 EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVL---VAIFSEQESQAA 121 (758)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHH---HHHTTCTTCHHH
T ss_pred HHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHH---HHHhccccchHH
Confidence 45778999999999888766 5543211 1234444 88889888888888888898888987 66554432 12
Q ss_pred hhhcc-cCCcccchhhccCCCCCch----hh--HH---HHHHHHHHHHHhcCcccCCCCCHHHHHHhcCccCCCCcCccc
Q psy15087 95 KLMAT-HQDTNHVQCYFSDPSGTST----FN--VL---LAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSW 164 (341)
Q Consensus 95 ~~~~~-~~~~~~~~~~~~~~~~~~~----~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~ 164 (341)
.++.. .++...+...+....+... .. +. .........|.+.+. .+++ ...+..|
T Consensus 122 ~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~l~~------------~~~~~~~ 185 (758)
T 1r6b_X 122 YLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTT----NLNQ------------LARVGGI 185 (758)
T ss_dssp HHHHHTTCCHHHHHHHHHTC---------------------------CCSSSC----BHHH------------HHHTTCS
T ss_pred HHHHHcCCCHHHHHHHHHHhhccccccccccccccccccccccchhHHHHHhH----hHHH------------HHhcCCC
Confidence 22222 3333333332221110000 00 00 000000000111110 0111 1125688
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeech
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDIS 234 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s 234 (341)
++++|.+..++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 9999999999988876643 456789999999999999999999987 6678888877
Q ss_pred hhh--hhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 235 TLT--DKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 235 ~l~--~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
.+. .++.|..+..++.++..+....++||||||+|.+.+....... .....+ .+..+.. ...+.+|++||
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~~~~----~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAAN----LIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHHHHH----HHSSCSS--SCCCEEEEEEC
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHHHHH----HHHHHHh--CCCeEEEEEeC
Confidence 776 3577888889999999998888899999999999876543211 111222 2222322 24588899998
Q ss_pred CCC-----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 313 RPD-----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 313 ~~~-----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
.++ .+|+++.+||. .+.++.|+.++|
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~ 354 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQ-KIDITEPSIEET 354 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEE-EEECCCCCHHHH
T ss_pred chHHhhhhhcCHHHHhCce-EEEcCCCCHHHH
Confidence 643 57899999998 599999997764
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.71 E-value=7.1e-18 Score=171.20 Aligned_cols=162 Identities=22% Similarity=0.267 Sum_probs=110.2
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhh--
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD-- 238 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~-- 238 (341)
...+++++|++++++.+.+.+....... ..++.++||+||||||||++|+++|..++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~--------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK--------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS--------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc--------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 4456779999999999987665421111 125668999999999999999999999999999998876543
Q ss_pred -------hhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC-----------
Q psy15087 239 -------KLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD----------- 300 (341)
Q Consensus 239 -------~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~----------- 300 (341)
.+.|.....+...|..+....| |+||||+|.+...++. ...+.|+..++.....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeee
Confidence 4556666666677776655554 9999999999765321 1234566666532211
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCCC
Q psy15087 301 KNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 301 ~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
...++++|+|||+++.+++++++||. .+.++.|+.+++
T Consensus 221 ~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~ 258 (543)
T 3m6a_A 221 DLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEK 258 (543)
T ss_dssp BCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHH
T ss_pred cccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHH
Confidence 01458999999999999999999995 689999987654
No 44
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=8.2e-17 Score=155.57 Aligned_cols=169 Identities=25% Similarity=0.337 Sum_probs=107.9
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHh----------------hcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLK----------------ESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~----------------~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
.|+|++.+++.|..++..+..+..... ..+...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 389999999999988864433332110 0111346778999999999999999999999999999
Q ss_pred Eeechhhh-hhhcCCc-hHHHHHHHHHH----HhcCCeEEEEcccchhhhcCCCCch---HHHHHHHHHHHHHhcCCCC-
Q psy15087 230 NLDISTLT-DKLYGES-PKLATAIFSLA----EKIQPCIIFIDEIDSLLRSRSSSDH---EATAQLKSIFLSKWDGLTT- 299 (341)
Q Consensus 230 ~i~~s~l~-~~~~g~~-~~~i~~lf~~a----~~~~p~II~IDEiD~l~~~~~~~~~---~~~~~i~~~ll~~ld~~~~- 299 (341)
.+++..+. ..+.|.. ...+..++..+ ....++||||||+|.+...+..... .....+++.|+..+++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998876 3455553 34455555432 2346799999999999765322111 1112356778888875310
Q ss_pred ----------------CCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 300 ----------------DKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 300 ----------------~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
-...++++|+++| .+.+++++.+||.. ..+.+|..
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~R~~~-~~~g~~~~ 232 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKKRTTQ-NVLGFTQE 232 (376)
T ss_dssp ---------------CEECTTCEEEEEEC-CTTHHHHTTTSCSS-CCCSCCCS
T ss_pred cccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHHHhcc-cccCCCch
Confidence 0013467888888 57899999999973 55555543
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.68 E-value=1.6e-16 Score=152.18 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=103.8
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeechhhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDISTLT 237 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s~l~ 237 (341)
+...|++++|++.+++.+....... . .+ ..++.++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~-------~-~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI-------R-EG-KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------H-TT-CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred cCcchhhccChHHHHHHHHHHHHHH-------H-cC-CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3456999999999999876655432 1 12 245679999999999999999999999975 88888876643
Q ss_pred hhhc-------------------------------------------------CCchHHHHHHHHHHHh---------cC
Q psy15087 238 DKLY-------------------------------------------------GESPKLATAIFSLAEK---------IQ 259 (341)
Q Consensus 238 ~~~~-------------------------------------------------g~~~~~i~~lf~~a~~---------~~ 259 (341)
..+. |+....++..+..+.. ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 3221 1122334444433322 12
Q ss_pred CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe-----------CCCCCCcHHHHccCCce
Q psy15087 260 PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT-----------NRPDDIDPAIARRMPKK 328 (341)
Q Consensus 260 p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT-----------N~~~~ld~al~rRf~~~ 328 (341)
|+||||||+|.+.. ...+.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 190 ~~vl~IDEi~~l~~-----------~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI-----------ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp BCEEEEESGGGSBH-----------HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred CceEEEhhccccCh-----------HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 68999999999842 2345566655432 2346555554 3477899999999976
Q ss_pred EEecCCCcCC
Q psy15087 329 YHIKLPLLSS 338 (341)
Q Consensus 329 i~i~lP~~e~ 338 (341)
+.++.|+.++
T Consensus 254 i~~~~~~~~e 263 (368)
T 3uk6_A 254 VSTTPYSEKD 263 (368)
T ss_dssp EEECCCCHHH
T ss_pred EEecCCCHHH
Confidence 7888887664
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=9.4e-17 Score=151.63 Aligned_cols=143 Identities=20% Similarity=0.142 Sum_probs=107.6
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+.+|++++|++++++.|...+.. ...+..+|++||||||||++|+++|++++.+++.++++...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 56899999999999999888763 25567788999999999999999999999999999986632
Q ss_pred cCCchHHHHHHHHHHHhc-----CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC
Q psy15087 241 YGESPKLATAIFSLAEKI-----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~-----~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~ 315 (341)
...++..+...... .++||||||+|.+.+ ....+.|+..++.. ..++.+|++||.+.
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~----~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY----SSNCSIIITANNID 147 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH----GGGCEEEEEESSGG
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC----CCCcEEEEEeCCcc
Confidence 23334433332222 568999999999851 11233444444432 13478889999999
Q ss_pred CCcHHHHccCCceEEecCCCcCC
Q psy15087 316 DIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 316 ~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.+++++++||. .+.++.|+.++
T Consensus 148 ~l~~~l~sR~~-~i~~~~~~~~e 169 (324)
T 3u61_B 148 GIIKPLQSRCR-VITFGQPTDED 169 (324)
T ss_dssp GSCTTHHHHSE-EEECCCCCHHH
T ss_pred ccCHHHHhhCc-EEEeCCCCHHH
Confidence 99999999995 58999998654
No 47
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.68 E-value=8.6e-17 Score=151.31 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=108.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
+.+|++++|.+.+++.+...+..... .+ ..+.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~--~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKA-------RK--EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHH-------HC--SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHc-------cC--CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 55899999999999999888764311 11 35678999999999999999999999999999998876532
Q ss_pred cCCchHHHHHHHHHHHh--cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC--------CC------CCCC
Q psy15087 241 YGESPKLATAIFSLAEK--IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT--------TD------KNID 304 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~--~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~--------~~------~~~~ 304 (341)
. ..++..... ..+++|||||+|.+... ....++..++... .. ...+
T Consensus 77 ----~---~~l~~~l~~~~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ----P---GDLAAILANSLEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----H---HHHHHHHTTTCCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----h---HHHHHHHHHhccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 223333332 46789999999997422 1233344333211 00 0124
Q ss_pred EEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 305 IIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 305 viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+++|++||.+..+++++.+||...+.++.|+.++
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEE 172 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHH
Confidence 7899999999999999999998889999998654
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=3.9e-16 Score=145.98 Aligned_cols=158 Identities=19% Similarity=0.296 Sum_probs=105.9
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh--
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK-- 239 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~-- 239 (341)
++++|++.+++.+...+....... .. . .++..++||+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~-~-~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KD-P-NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SC-T-TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CC-C-CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 358899999999988886531110 00 0 1344579999999999999999999988 567999998876432
Q ss_pred ---hcCCchH-----HHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC-------CCC
Q psy15087 240 ---LYGESPK-----LATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK-------NID 304 (341)
Q Consensus 240 ---~~g~~~~-----~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~-------~~~ 304 (341)
.+|.... ....+.........+||||||+|.+.. .+++.|+..++...... -.+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 2221110 001233334445569999999999732 34555666665322111 125
Q ss_pred EEEEEEeCC--------------------------CCCCcHHHHccCCceEEecCCCcCC
Q psy15087 305 IIIMGATNR--------------------------PDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 305 viVIatTN~--------------------------~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+++|+|||. ...+++++++||+..+.++.|+.++
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~ 220 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ 220 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHH
Confidence 789999998 4468899999999888888887554
No 49
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.64 E-value=4.4e-16 Score=130.87 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=94.3
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcC
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYG 242 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g 242 (341)
+++|.+...+.+.+.+... ...+.+|||+||||||||++|++++..+ +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 5789999988888877542 2456689999999999999999999987 77999 999876554
Q ss_pred CchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC-------C
Q psy15087 243 ESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP-------D 315 (341)
Q Consensus 243 ~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~-------~ 315 (341)
......+..+. .++|||||+|.+... .+..++..+... ..++.+|+|||.+ .
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l~~~-----------~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHLTRE-----------QQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGSCHH-----------HHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHS
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHCCHH-----------HHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcC
Confidence 22344555553 489999999998432 234455555322 2356789999974 2
Q ss_pred CCcHHHHccCCceEEecCCCc
Q psy15087 316 DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 316 ~ld~al~rRf~~~i~i~lP~~ 336 (341)
.+.+.+..|+.. +.+.+|+.
T Consensus 125 ~~~~~L~~rl~~-~~i~lPpL 144 (145)
T 3n70_A 125 HIIAELYYCFAM-TQIACLPL 144 (145)
T ss_dssp CCCHHHHHHHHH-HEEECCCC
T ss_pred CCCHHHHHHhcC-CEEeCCCC
Confidence 466777777754 67777764
No 50
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.63 E-value=1.6e-16 Score=133.40 Aligned_cols=133 Identities=13% Similarity=0.205 Sum_probs=92.7
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCch
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESP 245 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~ 245 (341)
+++|.+...+.+.+.+... ...+.+|||+||||||||++|++++..++ +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA------------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 4789999999888887653 13456799999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC-CC----CcHH
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP-DD----IDPA 320 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~-~~----ld~a 320 (341)
....+..+. .++|||||+|.+... .+..++..++... ..++.+|+|||.+ +. +++.
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHH
Confidence 345555543 589999999998432 2233444443321 2357788888864 33 4566
Q ss_pred HHccCCceEEecCCCc
Q psy15087 321 IARRMPKKYHIKLPLL 336 (341)
Q Consensus 321 l~rRf~~~i~i~lP~~ 336 (341)
+..|+.. +.+.+|+.
T Consensus 128 L~~rl~~-~~i~lPpL 142 (143)
T 3co5_A 128 LAGLFSE-SVVRIPPL 142 (143)
T ss_dssp HHHHSSS-EEEEECCC
T ss_pred HHHHhcC-cEEeCCCC
Confidence 7778766 67777764
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=8.1e-16 Score=152.56 Aligned_cols=139 Identities=25% Similarity=0.372 Sum_probs=99.6
Q ss_pred CcccccccCcHHHH---HHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIK---KELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k---~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~ 237 (341)
+.+|++++|++.++ +.|...+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~--------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA--------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH--------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc--------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 56899999999998 677776654 223689999999999999999999999999999986542
Q ss_pred hhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEe--
Q psy15087 238 DKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGAT-- 311 (341)
Q Consensus 238 ~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatT-- 311 (341)
....++.++..+. ...++||||||+|.+.... +..|+..++. ..+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT------TSCEEEEEESS
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc------CceEEEecCCC
Confidence 2334455555443 3467999999999985432 3345555543 236677666
Q ss_pred CCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 312 NRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 312 N~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
|....+++++++|+. .+.++.|+.++
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~~ed 169 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLSTED 169 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCCHHH
T ss_pred CcccccCHHHhCcee-EEeeCCcCHHH
Confidence 445579999999986 47787777553
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.63 E-value=2.5e-15 Score=137.97 Aligned_cols=152 Identities=19% Similarity=0.237 Sum_probs=97.5
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTLT 237 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l~ 237 (341)
..+|++++|.+...+.+.+.+... ...+.++||+||||||||++|++++..+. .+|+.++|+.+.
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~~~~~------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQVSHL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp --------CCCHHHHHHHHHHHHH------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred CcccccceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 357899999999999888776543 23456899999999999999999999874 689999998764
Q ss_pred hh-----hcCCchHHH-------HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------
Q psy15087 238 DK-----LYGESPKLA-------TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT------- 298 (341)
Q Consensus 238 ~~-----~~g~~~~~i-------~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~------- 298 (341)
.. .+|...... ...+.. ...++|||||++.+... .+..|+..++...
T Consensus 70 ~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 70 ENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC-
T ss_pred hhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCc
Confidence 32 222211100 112222 24589999999998432 2344444444211
Q ss_pred CCCCCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCC
Q psy15087 299 TDKNIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 299 ~~~~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
.....++.+|+|||.+ ..+.+++.+||.. +.+.+|+..+|
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRER 182 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGC
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhh
Confidence 0112357899999984 2477899999975 78889988876
No 53
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=4.3e-15 Score=130.29 Aligned_cols=143 Identities=22% Similarity=0.241 Sum_probs=100.3
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeech
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDIS 234 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s 234 (341)
.+..|++++|.+..++.|...+.. ..+.+++|+||||||||++|+++++.+ ...++.++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 356789999999999999887754 223359999999999999999999876 4567777765
Q ss_pred hhhhhhcCCchHHHHHHHHH-HH-----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy15087 235 TLTDKLYGESPKLATAIFSL-AE-----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIM 308 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~-a~-----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVI 308 (341)
.... ...+...... .. ...+++|+|||+|.+... ..+.++..++.. ..++.+|
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~----~~~~~~i 136 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY----SKSCRFI 136 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT----TTTEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc----CCCCeEE
Confidence 4321 1122222222 21 246789999999998432 123344444432 2457889
Q ss_pred EEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 309 GATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 309 atTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++||.++.+++++.+||. .+.++.|+.++
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~ 165 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEA 165 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred EEeCChhhcCHHHHHhCc-eeecCCCCHHH
Confidence 999999999999999997 67887777543
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.62 E-value=1.6e-15 Score=144.00 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=92.9
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------c-----
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-------S----- 227 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-------~----- 227 (341)
++.+|++++|++.+++.+...... ....++||+||||||||++|+++++.++. +
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 467899999999988765444322 12346999999999999999999999863 2
Q ss_pred ---------------------EEEeechhhhhhhcCCchHHHHHHHHHH---------HhcCCeEEEEcccchhhhcCCC
Q psy15087 228 ---------------------FINLDISTLTDKLYGESPKLATAIFSLA---------EKIQPCIIFIDEIDSLLRSRSS 277 (341)
Q Consensus 228 ---------------------~i~i~~s~l~~~~~g~~~~~i~~lf~~a---------~~~~p~II~IDEiD~l~~~~~~ 277 (341)
++.+.........+|... +...+... ....++||||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---
Confidence 121111111111122100 01111111 1123689999999998432
Q ss_pred CchHHHHHHHHHHHHHhcC----CCCCC-----CCCEEEEEEeCCCC-CCcHHHHccCCceEEecCCCc
Q psy15087 278 SDHEATAQLKSIFLSKWDG----LTTDK-----NIDIIIMGATNRPD-DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 278 ~~~~~~~~i~~~ll~~ld~----~~~~~-----~~~viVIatTN~~~-~ld~al~rRf~~~i~i~lP~~ 336 (341)
.++.|+..++. +.... ..++++|+|+|..+ .+++++++||+..+.++.|+.
T Consensus 160 --------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 160 --------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp --------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred --------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCc
Confidence 23344444432 11111 13689999999844 899999999988889988843
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=1.5e-15 Score=159.73 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=109.3
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL 240 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~ 240 (341)
.++++|++.+++.+...+....... . .. .++..++||+||||||||++|+++|..+ +.+|+.++++++...+
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~---~-~~-~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGL---K-DP-KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH 564 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTC---S-CT-TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC
T ss_pred hCcCcChHHHHHHHHHHHHHHHccc---C-CC-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc
Confidence 3569999999999988886531100 0 00 1223369999999999999999999997 7899999999988776
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-------CCCCCEEEEEEeCC
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-------DKNIDIIIMGATNR 313 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-------~~~~~viVIatTN~ 313 (341)
... ...+....+...++||||||||.+. ..+++.|+..++.... ....++++|+|||.
T Consensus 565 ~~~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 STS----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CCC-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ccc----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 554 2233344555677999999999873 2345666666654221 11235799999997
Q ss_pred CCC------------CcHHHHccCCceEEecCCCcCC
Q psy15087 314 PDD------------IDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 314 ~~~------------ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+.. +.+++++||+..+.++.|+.++
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH 666 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence 554 7899999998888888887654
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.60 E-value=2.1e-15 Score=158.43 Aligned_cols=155 Identities=20% Similarity=0.324 Sum_probs=109.6
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCC---CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhh--
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGL---LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK-- 239 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~---~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~-- 239 (341)
.+++|++.+++.+...+... ..|+ .++..++||+||||||||++|+++|..++.+|+.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 35889999999888876542 1221 1344579999999999999999999999999999999988653
Q ss_pred ---hcCCchHHH-----HHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC-------CCC
Q psy15087 240 ---LYGESPKLA-----TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK-------NID 304 (341)
Q Consensus 240 ---~~g~~~~~i-----~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~-------~~~ 304 (341)
.+|.....+ ..+....+...++||||||+|++. ..+++.|+..++...... -.+
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred HhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 222211111 223445556677999999999873 235666777666321100 135
Q ss_pred EEEEEEeCCCC-------------------------CCcHHHHccCCceEEecCCCcCC
Q psy15087 305 IIIMGATNRPD-------------------------DIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 305 viVIatTN~~~-------------------------~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++||+|||.+. .+++++++||+..+.++.|+.++
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~ 657 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDV 657 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHH
Confidence 88999999854 57899999999888888887654
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=2.6e-15 Score=141.88 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=95.3
Q ss_pred cCccccccc-C--cHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 160 INGSWKNIA-G--LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 160 ~~~~~~dI~-G--~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
+..+|++++ | ...+...+...+..+ ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 466888876 4 444455555544332 1346789999999999999999999998 899999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
..+...+.+.........|.... ..+++|||||++.+.+.+ ... ..++..++.... ....+|+++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-----~~~----~~l~~~l~~~~~--~~~~iii~~~~~ 141 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-----RTQ----IEFFHIFNTLYL--LEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-----HHH----HHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-----HHH----HHHHHHHHHHHH--CCCeEEEEecCC
Confidence 88765544332221112222222 247899999999985421 111 222222222111 123566777766
Q ss_pred CC---CCcHHHHccCCc--eEEecCCCcC
Q psy15087 314 PD---DIDPAIARRMPK--KYHIKLPLLS 337 (341)
Q Consensus 314 ~~---~ld~al~rRf~~--~i~i~lP~~e 337 (341)
+. .+++++++||.. .+.++. +.+
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNK 169 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHH
Confidence 65 689999999964 345544 443
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=7.7e-15 Score=140.27 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=106.7
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeech
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDIS 234 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s 234 (341)
.++++|.+..++.|...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 37799999999999887754211 1456789999999999999999999988 8889999986
Q ss_pred hhhhhh----------------cCCc-hHHHHHHHHHHHhc-CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC
Q psy15087 235 TLTDKL----------------YGES-PKLATAIFSLAEKI-QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG 296 (341)
Q Consensus 235 ~l~~~~----------------~g~~-~~~i~~lf~~a~~~-~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~ 296 (341)
...... .|.. ......++...... .++||||||+|.+...+ .....+..++..++.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQE 161 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhh
Confidence 532211 1221 22344555554433 47899999999986432 022334455554443
Q ss_pred CCCCCCCCEEEEEEeCCC---CCCcHHHHccCCc-eEEecCCCcCC
Q psy15087 297 LTTDKNIDIIIMGATNRP---DDIDPAIARRMPK-KYHIKLPLLSS 338 (341)
Q Consensus 297 ~~~~~~~~viVIatTN~~---~~ld~al~rRf~~-~i~i~lP~~e~ 338 (341)
... ..++.+|++||.+ +.+++.+.+||.. .+.++.|+.++
T Consensus 162 ~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 162 LGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQ 205 (387)
T ss_dssp C-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHH
T ss_pred cCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHH
Confidence 210 2468899999987 6789999999986 67777777543
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=1.3e-15 Score=144.30 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=97.7
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhh--hh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLT--DK 239 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~--~~ 239 (341)
..+++++|++.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.... ..
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 3456799999999888776543 24799999999999999999999999999988873111 11
Q ss_pred hcCCchHH-HHHHHHHHHhcC---CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC-------CCCCCCCEEEE
Q psy15087 240 LYGESPKL-ATAIFSLAEKIQ---PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL-------TTDKNIDIIIM 308 (341)
Q Consensus 240 ~~g~~~~~-i~~lf~~a~~~~---p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~-------~~~~~~~viVI 308 (341)
..|..... ....+ ..... .+|+||||++.+.+. .++.|+..++.. ....+.++++|
T Consensus 88 l~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 88 LIGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSPAK-----------VQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp HHEEEEEETTTTEE--EEEECTTCSSEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred cCCceeecCCCCce--EeccCcccccEEEEEccccCCHH-----------HHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11110000 00000 00111 279999999997422 233444444321 11123457888
Q ss_pred EEeCCCC-----CCcHHHHccCCceEEecCCCcCCC
Q psy15087 309 GATNRPD-----DIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 309 atTN~~~-----~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
+|+|..+ .+++++++||...+.++.|+.++|
T Consensus 155 at~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~ 190 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESE 190 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHH
T ss_pred EecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHH
Confidence 9998654 389999999988899999987654
No 60
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.56 E-value=9.2e-15 Score=137.80 Aligned_cols=147 Identities=20% Similarity=0.340 Sum_probs=102.6
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh---
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK--- 239 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~--- 239 (341)
+++|.+...+.+.+.+... ...+.+|||+||||||||++|++++..+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 5889999999888877653 2456789999999999999999999976 678999998876432
Q ss_pred --hcCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-------CCCC
Q psy15087 240 --LYGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-------DKNI 303 (341)
Q Consensus 240 --~~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-------~~~~ 303 (341)
.+|... ......|..+. .++|||||++.+.. ..+..|+..++.... ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccC
Confidence 222210 01123344443 48999999999843 234455555553321 1123
Q ss_pred CEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCC
Q psy15087 304 DIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 304 ~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
++.||+|||.+ ..+++.+.+||. .+.+.+|+..+|
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR 178 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQR 178 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGG
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHh
Confidence 58899999985 246778888987 488999998876
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=2.7e-14 Score=137.01 Aligned_cols=148 Identities=22% Similarity=0.280 Sum_probs=104.6
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----------CCcEEEeec
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----------NVSFINLDI 233 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----------~~~~i~i~~ 233 (341)
++++|.+..++.|...+..... ...+.+++|+||||||||++|+++++++ +.+++.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 6799999999999887755322 1456789999999999999999999987 899999998
Q ss_pred hhhh-h----------hh-------cCCc-hHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHH-HHHHHHH
Q psy15087 234 STLT-D----------KL-------YGES-PKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQL-KSIFLSK 293 (341)
Q Consensus 234 s~l~-~----------~~-------~g~~-~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i-~~~ll~~ 293 (341)
.... . .. .+.. ...+..++..+.... .||||||+|.+..... ... +..++.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~-------~~~~l~~l~~- 160 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG-------GDIVLYQLLR- 160 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT-------SHHHHHHHHT-
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC-------CceeHHHHhc-
Confidence 7643 1 11 1111 233445555444434 4999999999864321 111 223322
Q ss_pred hcCCCCCCCCCEEEEEEeCCC---CCCcHHHHccCCceEEecCCCcCC
Q psy15087 294 WDGLTTDKNIDIIIMGATNRP---DDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 294 ld~~~~~~~~~viVIatTN~~---~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.. .++.+|++||.+ +.+++++++||...+.++.|+.++
T Consensus 161 ---~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~ 201 (384)
T 2qby_B 161 ---SD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQ 201 (384)
T ss_dssp ---SS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHH
T ss_pred ---CC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHH
Confidence 11 458899999987 678999999998888998887654
No 62
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=5.8e-15 Score=148.84 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=103.0
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhh-chhHHhhcCC--CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMK-NRNLLKESGL--LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~-~~~~~~~~g~--~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
.+.+|++++|++.+++.|.+.+..... .+..+...|. ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 366899999999999999998875322 2222333331 1246799999999999999999999999999999999876
Q ss_pred hhhhcCCch-------HHHHHHHHHH-----HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q psy15087 237 TDKLYGESP-------KLATAIFSLA-----EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNID 304 (341)
Q Consensus 237 ~~~~~g~~~-------~~i~~lf~~a-----~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~ 304 (341)
......... ..+..+|..+ ....++||||||+|.+..... +. +..++..++. ....
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----~~----l~~L~~~l~~----~~~~ 181 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----GG----VGQLAQFCRK----TSTP 181 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----TH----HHHHHHHHHH----CSSC
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----HH----HHHHHHHHHh----cCCC
Confidence 543211000 0012222222 224678999999999965422 11 2233333332 1233
Q ss_pred EEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 305 IIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 305 viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
+++++++.....+. .+++| ...+.++.|+.++
T Consensus 182 iIli~~~~~~~~l~-~l~~r-~~~i~f~~~~~~~ 213 (516)
T 1sxj_A 182 LILICNERNLPKMR-PFDRV-CLDIQFRRPDANS 213 (516)
T ss_dssp EEEEESCTTSSTTG-GGTTT-SEEEECCCCCHHH
T ss_pred EEEEEcCCCCccch-hhHhc-eEEEEeCCCCHHH
Confidence 55555444334444 34444 5678999888765
No 63
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=9.3e-15 Score=144.61 Aligned_cols=157 Identities=13% Similarity=0.239 Sum_probs=98.0
Q ss_pred CcCccccccc-CcHH--HHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEE
Q psy15087 159 EINGSWKNIA-GLEH--IKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFIN 230 (341)
Q Consensus 159 ~~~~~~~dI~-G~~~--~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~ 230 (341)
.+..+|++++ |... +...+...+..+ + . +.+++|+||||||||+||+++++.+ +.+++.
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------G--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------C--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3456899976 6433 333343333221 1 2 6789999999999999999999988 888999
Q ss_pred eechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 231 LDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 231 i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
+++..+...+.+.........|.......++||||||++.+.+.. ... ..|+..++.... ....+|+++
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----~~q----~~l~~~l~~l~~--~~~~iIitt 234 (440)
T 2z4s_A 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----GVQ----TELFHTFNELHD--SGKQIVICS 234 (440)
T ss_dssp EEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----HHH----HHHHHHHHHHHT--TTCEEEEEE
T ss_pred eeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----HHH----HHHHHHHHHHHH--CCCeEEEEE
Confidence 999887654432221111122333323368999999999985421 112 223333322221 123555655
Q ss_pred eCCCCC---CcHHHHccCC--ceEEecCCCcCCC
Q psy15087 311 TNRPDD---IDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 311 TN~~~~---ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
.+.+.. +++.+++||. ..+.++.|+.++|
T Consensus 235 ~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_dssp SSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHH
Confidence 555554 8899999996 6688888887654
No 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.54 E-value=1.3e-14 Score=135.49 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=102.3
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEee
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLD 232 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~ 232 (341)
...+.+|++++|++.+++.|...+.. + ..+ ++||+||||||||++|+++++.+ +.+++.++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 34467899999999999998877643 1 223 49999999999999999999986 34577888
Q ss_pred chhhhhhhcCCchHHHHHHHHHH--HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 233 ISTLTDKLYGESPKLATAIFSLA--EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 233 ~s~l~~~~~g~~~~~i~~lf~~a--~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
++.... .......+....... ....+.||+|||+|.+.. ...+.|+..++. ...++.+|++
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~----~~~~~~~i~~ 138 (319)
T 2chq_A 76 ASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM----YSKSCRFILS 138 (319)
T ss_dssp TTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSS----SSSSEEEEEE
T ss_pred CccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHh----cCCCCeEEEE
Confidence 765322 111112222221110 113578999999999842 123445544443 3346888999
Q ss_pred eCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 311 TNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 311 TN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
||.+..+.+++.+|+. .+.++.|+.++
T Consensus 139 ~~~~~~l~~~l~sr~~-~i~~~~~~~~~ 165 (319)
T 2chq_A 139 CNYVSRIIEPIQSRCA-VFRFKPVPKEA 165 (319)
T ss_dssp ESCGGGSCHHHHTTCE-EEECCCCCHHH
T ss_pred eCChhhcchHHHhhCe-EEEecCCCHHH
Confidence 9999999999999986 58888887543
No 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1.6e-14 Score=136.99 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=97.1
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC------CcEEEeec
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN------VSFINLDI 233 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~------~~~i~i~~ 233 (341)
.+.+|++++|++++++.|...+.. ..+.++||+||||||||++|+++|+.++ ..++.+++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS--------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC--------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc--------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 366899999999999999887654 2223499999999999999999999864 35777776
Q ss_pred hhhhhhhcCCchHHHHHHHHHHH----------------hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 234 STLTDKLYGESPKLATAIFSLAE----------------KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 234 s~l~~~~~g~~~~~i~~lf~~a~----------------~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
++... ...++..+.... ...+.||+|||+|.+... ..+.|+..++..
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~ 160 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMETY 160 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHhc
Confidence 65311 111111111111 124569999999998432 234455555432
Q ss_pred CCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcC
Q psy15087 298 TTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.....+|.++|.+..+++++++|+. .+.++.|+.+
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~ 195 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDAS 195 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHH
T ss_pred ----CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHH
Confidence 2346677788999999999999986 5777777654
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.4e-14 Score=137.33 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=101.5
Q ss_pred ccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----------CCcEEEeechhh
Q psy15087 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----------NVSFINLDISTL 236 (341)
Q Consensus 167 I~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----------~~~~i~i~~s~l 236 (341)
+.|.++..+.|...+...+. ...+.+++|+||||||||++++++++++ ++.+++++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 66777777777776655322 2567899999999999999999999998 356888998765
Q ss_pred hhh----------hc------CCchHHHHHHHHHH--HhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC
Q psy15087 237 TDK----------LY------GESPKLATAIFSLA--EKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298 (341)
Q Consensus 237 ~~~----------~~------g~~~~~i~~lf~~a--~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~ 298 (341)
.+. .. +.....+...|... ....+.||+|||+|.+. .. .++..|+....
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------~q----~~L~~l~~~~~--- 158 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------SE----KILQYFEKWIS--- 158 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------CT----HHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------cc----hHHHHHHhccc---
Confidence 432 11 33455677777764 34567899999999996 11 22333333211
Q ss_pred CCCCCCEEEEEEeCCCCCC----cHHHHccCC-ceEEecCCCcCC
Q psy15087 299 TDKNIDIIIMGATNRPDDI----DPAIARRMP-KKYHIKLPLLSS 338 (341)
Q Consensus 299 ~~~~~~viVIatTN~~~~l----d~al~rRf~-~~i~i~lP~~e~ 338 (341)
....+++||+++|..+.. ++++++||. ..+.|+.++.+|
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 123569999999998754 445577987 467777776554
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=5.2e-14 Score=131.75 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=98.5
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CcEEEeech
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN-----VSFINLDIS 234 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~-----~~~i~i~~s 234 (341)
.+.+|++++|++.+++.|...+.. ....++||+||||||||++|+++++.+. ..++.++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 467899999999999999887654 1233599999999999999999999863 346777765
Q ss_pred hhhhhhcCCchHHHHHHHHH--HHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 235 TLTDKLYGESPKLATAIFSL--AEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~--a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
+.... ......+...... .....+.||+|||+|.+... ..+.|+..++.. ..++.+|+++|
T Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~----~~~~~~i~~~~ 148 (327)
T 1iqp_A 86 DERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEMF----SSNVRFILSCN 148 (327)
T ss_dssp CHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT----TTTEEEEEEES
T ss_pred ccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhc----CCCCeEEEEeC
Confidence 53221 0111111111110 01135789999999998421 234445544432 24578888999
Q ss_pred CCCCCcHHHHccCCceEEecCCCcC
Q psy15087 313 RPDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 313 ~~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++.+.+++.+|+. .+.++.|+.+
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~~~ 172 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLRDE 172 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCCHH
T ss_pred CccccCHHHHhhCc-EEEecCCCHH
Confidence 99999999999986 5777777644
No 68
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=7.9e-14 Score=123.42 Aligned_cols=143 Identities=21% Similarity=0.305 Sum_probs=97.4
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF------------ 228 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~------------ 228 (341)
+..|++++|.+..++.|...+... ..+..++|+||||||||++++++++.++...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT-------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 567889999999999998877541 4456899999999999999999998874321
Q ss_pred ------------EEeechhhhhhhcCCchHHHHHHHHHHH----hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 229 ------------INLDISTLTDKLYGESPKLATAIFSLAE----KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 229 ------------i~i~~s~l~~~~~g~~~~~i~~lf~~a~----~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
+.++... ......+..++..+. ...+.+|+|||+|.+.. ...+.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHH
Confidence 1111110 011223344444332 23478999999999732 22445555
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.++.. ..++.+|++||.+..+++++.+|+ ..+.++.|+.++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e 189 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQ 189 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHH
Confidence 55532 346888999999889999999996 457777776543
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=4.6e-14 Score=131.91 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=101.2
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeech
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDIS 234 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s 234 (341)
.+..|++++|++.+++.|...+.. + ..+. +||+||||+|||++|+++++.+ +.+++.++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G--NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C--CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C--CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 356799999999999999888654 1 3344 9999999999999999999986 3457777765
Q ss_pred hhhhhhcCCchHHHHHHHHHHH-------hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy15087 235 TLTDKLYGESPKLATAIFSLAE-------KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIII 307 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~-------~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viV 307 (341)
+.. ....++..+.... ...+.||+|||+|.+... ..+.|+..++. ...++.+
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~----~~~~~~~ 140 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMEL----YSNSTRF 140 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHH----TTTTEEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhc----cCCCceE
Confidence 421 1233444444333 224789999999998432 12334444432 2245788
Q ss_pred EEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 308 MGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 308 IatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
|++||.+..+.+++.+|+. .+.++.|+.++
T Consensus 141 il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~ 170 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA-ILRYSKLSDED 170 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred EEEeCChhhchhHHHhhce-EEeecCCCHHH
Confidence 8889999999999999986 68888887653
No 70
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.51 E-value=2.1e-14 Score=160.11 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=108.9
Q ss_pred CCcCcccccccCcHHHHHHHHHHhhchhhc----------hhHHhh------cCC---------CCCCce--EEEECCCC
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKN----------RNLLKE------SGL---------LKPPKG--ILLYGPPG 210 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v~~pl~~----------~~~~~~------~g~---------~~~~~g--vLL~GPpG 210 (341)
....++|++|+|++++|+++.+.+.+|+.+ ++.++. .|. -.+|+| +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345689999999999999999999999854 556655 221 024555 99999999
Q ss_pred CCHHHHHHHHHHHc---CCcEEEeechhhh------------hhhcCC----chHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 211 CGKTMIAKATAKEA---NVSFINLDISTLT------------DKLYGE----SPKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 211 tGKT~LAkalA~~l---~~~~i~i~~s~l~------------~~~~g~----~~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
||||+||++++.+. +-+.+.++..+.. ++|+++ +++.++.+|..|+...||+||+|++++|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999998876 4555555555433 556667 7899999999999999999999999999
Q ss_pred hhcCC----CC--chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCC
Q psy15087 272 LRSRS----SS--DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313 (341)
Q Consensus 272 ~~~~~----~~--~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~ 313 (341)
.+.+. .+ ......+++++++..+++..... +|+|| +||+
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~--~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLI-FINQ 1217 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT--TCEEE-EEEC
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccC--CeEEE-Eecc
Confidence 87731 11 23567788999999999876543 47777 6776
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=8.3e-14 Score=133.06 Aligned_cols=143 Identities=21% Similarity=0.301 Sum_probs=100.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCc-------------
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS------------- 227 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~------------- 227 (341)
+..|++++|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+++.
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 56789999999999999888754 1456679999999999999999999988642
Q ss_pred -----------EEEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHH
Q psy15087 228 -----------FINLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS 292 (341)
Q Consensus 228 -----------~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~ 292 (341)
++.++... ......++.++..+.. ..+.||+|||+|.+.. ...+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence 12222111 0112234555555442 3468999999999832 12445566
Q ss_pred HhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 293 KWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 293 ~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
.++. ...++++|++|+.+..+.+++++|+ ..+.++.|+.++
T Consensus 142 ~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~ 182 (373)
T 1jr3_A 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQ 182 (373)
T ss_dssp HHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred HHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHH
Confidence 5554 2346888888988888999999997 557888777543
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=3.3e-13 Score=128.67 Aligned_cols=157 Identities=16% Similarity=0.242 Sum_probs=107.2
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc------CCcEEEeechh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA------NVSFINLDIST 235 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l------~~~~i~i~~s~ 235 (341)
...++++|.+..++.|.+.+...+. ...+.+++|+||||||||++++++++.+ +.+++.+++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3447899999999999887754221 1456789999999999999999999988 88999998764
Q ss_pred hhh------hh----------cCC-chHHHHHHHHHHHhcC-CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCC
Q psy15087 236 LTD------KL----------YGE-SPKLATAIFSLAEKIQ-PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGL 297 (341)
Q Consensus 236 l~~------~~----------~g~-~~~~i~~lf~~a~~~~-p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~ 297 (341)
... .. .+. .......++....... |.||+|||++.+...... ..+..++..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV 159 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc
Confidence 321 10 111 1233445555554443 899999999999754311 1244555555443
Q ss_pred CCCCCCCEEEEEEeCCC---CCCcHHHHccCCc-eEEecCCCcCC
Q psy15087 298 TTDKNIDIIIMGATNRP---DDIDPAIARRMPK-KYHIKLPLLSS 338 (341)
Q Consensus 298 ~~~~~~~viVIatTN~~---~~ld~al~rRf~~-~i~i~lP~~e~ 338 (341)
...++.+|+++|.+ ..+++.+.+||.. .+.++.++.++
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 23468889999876 4678899999864 67888877653
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.49 E-value=2.3e-13 Score=121.43 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=91.6
Q ss_pred CcccccccC---cHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeech
Q psy15087 161 NGSWKNIAG---LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIS 234 (341)
Q Consensus 161 ~~~~~dI~G---~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s 234 (341)
+.+|++++| ...+.+.+...+.. ..+.+++|+||||||||++|++++.++ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 468889886 24556666555432 246789999999999999999999887 4778888887
Q ss_pred hhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCE-EEEEEeCC
Q psy15087 235 TLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDI-IIMGATNR 313 (341)
Q Consensus 235 ~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~v-iVIatTN~ 313 (341)
++...... .+. ....+.+|+|||++.+.... ... ..++..++..... ..+ +|+++++.
T Consensus 90 ~~~~~~~~----~~~------~~~~~~vliiDe~~~~~~~~-----~~~----~~l~~~l~~~~~~--~~~~ii~~~~~~ 148 (242)
T 3bos_A 90 IHASISTA----LLE------GLEQFDLICIDDVDAVAGHP-----LWE----EAIFDLYNRVAEQ--KRGSLIVSASAS 148 (242)
T ss_dssp GGGGSCGG----GGT------TGGGSSEEEEETGGGGTTCH-----HHH----HHHHHHHHHHHHH--CSCEEEEEESSC
T ss_pred HHHHHHHH----HHH------hccCCCEEEEeccccccCCH-----HHH----HHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence 76543211 111 11356899999999984321 111 2222222222111 123 44444444
Q ss_pred CC---CCcHHHHccCC--ceEEecCCCcCCC
Q psy15087 314 PD---DIDPAIARRMP--KKYHIKLPLLSSF 339 (341)
Q Consensus 314 ~~---~ld~al~rRf~--~~i~i~lP~~e~R 339 (341)
+. .+++++.+||. ..+.++.|+.+++
T Consensus 149 ~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~ 179 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEK 179 (242)
T ss_dssp TTTTTCCCHHHHHHHHHSEEEECCCCCGGGH
T ss_pred HHHHHHhhhhhhhHhhcCceEEeCCCCHHHH
Confidence 43 45689999985 6789999988764
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.48 E-value=7e-14 Score=148.83 Aligned_cols=158 Identities=20% Similarity=0.321 Sum_probs=106.6
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh-
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK- 239 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~- 239 (341)
+++|+|++.+++.+...+...... .... .++..++||+||||||||++|+++|..+ +.+|+.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~--~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDP--NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCS--SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCC--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh
Confidence 567899999999998887652110 0000 1334589999999999999999999998 789999999876543
Q ss_pred ----hcCCchHH-----HHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCC-------CC
Q psy15087 240 ----LYGESPKL-----ATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK-------NI 303 (341)
Q Consensus 240 ----~~g~~~~~-----i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~-------~~ 303 (341)
.+|..... ...+....+...++||||||++.+. ..+++.|+..++...... -.
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGGC--------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC-----------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 12111110 1233344455567999999999873 345677777777432110 13
Q ss_pred CEEEEEEeCCC--------------------------CCCcHHHHccCCceEEecCCCcC
Q psy15087 304 DIIIMGATNRP--------------------------DDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 304 ~viVIatTN~~--------------------------~~ld~al~rRf~~~i~i~lP~~e 337 (341)
+++||+|||.. ..+.+++++||+..+.+..|+.+
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~e 760 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKE 760 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHH
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHH
Confidence 58899999972 24678899999887877777644
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=5.9e-13 Score=127.54 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=102.3
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCc--eEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhh
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPK--GILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLT 237 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~--gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~ 237 (341)
.++++|.+..++.|...+..... + ..+. +++|+||||||||+++++++..+ +.+++.+++....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~--~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S--TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C--CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 46799999999999888765322 1 2334 89999999999999999999988 5788888876532
Q ss_pred hh---------hc-------CCc-hHHHHHHHHHHHh-cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC
Q psy15087 238 DK---------LY-------GES-PKLATAIFSLAEK-IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT 299 (341)
Q Consensus 238 ~~---------~~-------g~~-~~~i~~lf~~a~~-~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 299 (341)
.. .. +.. ......+...... ..|.||+|||++.+. ...+..|+..++....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCC
Confidence 10 01 111 2223333333332 357899999999971 1234455555543321
Q ss_pred CCCCCEEEEEEeCCC---CCCcHHHHccCCc-eEEecCCCcC
Q psy15087 300 DKNIDIIIMGATNRP---DDIDPAIARRMPK-KYHIKLPLLS 337 (341)
Q Consensus 300 ~~~~~viVIatTN~~---~~ld~al~rRf~~-~i~i~lP~~e 337 (341)
....++.+|+++|.+ +.+++.+.+||.. .+.++.++.+
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKD 196 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHH
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHH
Confidence 111368899999987 6788999999886 6777766654
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.45 E-value=1.7e-13 Score=137.54 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=88.3
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechh-hhhhhcC
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN--VSFINLDIST-LTDKLYG 242 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~-l~~~~~g 242 (341)
.|+|++++++.+..++.. ..+|||+||||||||++|+++|..++ .+|..+.+.. ..+..+|
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 378999999887666532 35899999999999999999999884 3555554432 1122233
Q ss_pred Cch--H-HHHHHHHHHHhc---CCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcC-------CCCCCCCCEEEEE
Q psy15087 243 ESP--K-LATAIFSLAEKI---QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDG-------LTTDKNIDIIIMG 309 (341)
Q Consensus 243 ~~~--~-~i~~lf~~a~~~---~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~-------~~~~~~~~viVIa 309 (341)
... . .-...|..+... .++|||||||+.+. ....+.|+..|+. .....+.+ ++|+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ 154 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVA 154 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhh
Confidence 111 0 001222212111 46799999998763 2345566666642 11122223 4577
Q ss_pred EeCCCCC---CcHHHHccCCceEEecCCCc
Q psy15087 310 ATNRPDD---IDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 310 tTN~~~~---ld~al~rRf~~~i~i~lP~~ 336 (341)
|||.... ..+++++||...+.++.|+.
T Consensus 155 ATN~lpe~~~~~~aLldRF~~~i~v~~p~~ 184 (500)
T 3nbx_X 155 ASNELPEADSSLEALYDRMLIRLWLDKVQD 184 (500)
T ss_dssp EESSCCCTTCTTHHHHTTCCEEEECCSCCC
T ss_pred ccccCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 7776322 44699999988899999986
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=3.6e-13 Score=128.09 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=94.7
Q ss_pred CCcCcccccccCcHHHHHHHHHHh-hchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC----------
Q psy15087 158 EEINGSWKNIAGLEHIKKELNQSV-IFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV---------- 226 (341)
Q Consensus 158 ~~~~~~~~dI~G~~~~k~~L~~~v-~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~---------- 226 (341)
...+.+|++++|++.+++.|...+ .. ...+. ++|+||+|+|||++++++|.++..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 344678999999999999988776 22 13344 999999999999999999996521
Q ss_pred -------------------cEEEeechhhhhhhcCCchHHHHHHHHHHH--------------hcCCeEEEEcccchhhh
Q psy15087 227 -------------------SFINLDISTLTDKLYGESPKLATAIFSLAE--------------KIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 227 -------------------~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~--------------~~~p~II~IDEiD~l~~ 273 (341)
+++.++.+... ......++.....+. ...|.|++|||++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~ 148 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148 (354)
T ss_dssp -------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH
T ss_pred eeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH
Confidence 11222221110 001112333333321 23577999999998632
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 274 SRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 274 ~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
. ..+.++..++.. ..++.+|.+||.++.+.+++++|+ ..+.++.|+.++
T Consensus 149 -------~----~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~ 197 (354)
T 1sxj_E 149 -------D----AQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSE 197 (354)
T ss_dssp -------H----HHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHH
T ss_pred -------H----HHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHH
Confidence 1 233444444432 234778888999999999999998 668888887654
No 78
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=1.6e-12 Score=123.70 Aligned_cols=150 Identities=23% Similarity=0.312 Sum_probs=100.6
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~ 240 (341)
..+|++++|++.+++.+...+..... .+ .++.+++|+||||||||+||+++|..+++++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~--~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------RG--EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HT--CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------cC--CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 44788999999999888777654211 11 45678999999999999999999999999887766544321
Q ss_pred cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC------C--------CCCCEE
Q psy15087 241 YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT------D--------KNIDII 306 (341)
Q Consensus 241 ~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~------~--------~~~~vi 306 (341)
...+..++.. ....+|+||||++.+.+. . ...++..++.... . .-..+.
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-------~----~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLNKA-------V----EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-------H----HHHHHHHHHTSCCCC---------------CCCE
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-------H----HHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1222222221 124689999999998531 1 1222222221110 0 012367
Q ss_pred EEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 307 IMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 307 VIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++++++.+..+++++++||.....++.|+.++
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKE 184 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHH
Confidence 78899999999999999998778888887654
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.9e-12 Score=123.16 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=95.0
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----cEEEeechh
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV-----SFINLDIST 235 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~-----~~i~i~~s~ 235 (341)
+..|++++|++.+++.|...+.. | ..+ +++|+||||||||++|+++|..+.. .+..++++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~-----------g--~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE-----------G--KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------T--CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C--CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 66899999999999999887654 1 333 4999999999999999999998743 355565543
Q ss_pred hhhhhcCCchHHHHHHHHHHH-h-----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy15087 236 LTDKLYGESPKLATAIFSLAE-K-----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMG 309 (341)
Q Consensus 236 l~~~~~g~~~~~i~~lf~~a~-~-----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIa 309 (341)
.. ....++....... . ..+.|++|||+|.+... ..+.|+..++.. ...+.+|.
T Consensus 87 ~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~----~~~~~~il 145 (340)
T 1sxj_C 87 DR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERY----TKNTRFCV 145 (340)
T ss_dssp CC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT----TTTEEEEE
T ss_pred cc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcC----CCCeEEEE
Confidence 21 1222333222222 1 23689999999998421 234455555432 23567788
Q ss_pred EeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 310 ATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 310 tTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
+||.+..+.+++++|+. .+.+..++.
T Consensus 146 ~~n~~~~i~~~i~sR~~-~~~~~~l~~ 171 (340)
T 1sxj_C 146 LANYAHKLTPALLSQCT-RFRFQPLPQ 171 (340)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred EecCccccchhHHhhce-eEeccCCCH
Confidence 89999999999999986 466665554
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4.4e-12 Score=119.60 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=92.8
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc------CCcEEEeechhhhhhhcC
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA------NVSFINLDISTLTDKLYG 242 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l------~~~~i~i~~s~l~~~~~g 242 (341)
|++++.+.|...+... + ..++|||||||+|||++|+++|+.+ ...++.++++. ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----EN 61 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SC
T ss_pred ChHHHHHHHHHHHHCC-------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CC
Confidence 6777888888876541 3 5689999999999999999999864 33566665431 01
Q ss_pred CchHHHHHHHHHHHhcC----CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCc
Q psy15087 243 ESPKLATAIFSLAEKIQ----PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318 (341)
Q Consensus 243 ~~~~~i~~lf~~a~~~~----p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld 318 (341)
.....++.+...+...+ ..|++|||+|.+.. ...+.|+..++. ++.++++|.+||.++.+.
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEe----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEE----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHS----CCTTEEEEEEESCGGGSC
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhC----CCCCeEEEEEECChHhCh
Confidence 22334677777775432 47999999999842 224567777764 334677788888889999
Q ss_pred HHHHccCCceEEecCCCcCC
Q psy15087 319 PAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 319 ~al~rRf~~~i~i~lP~~e~ 338 (341)
+++++| .+.++.|+.++
T Consensus 127 ~tI~SR---~~~f~~l~~~~ 143 (305)
T 2gno_A 127 PTIKSR---VFRVVVNVPKE 143 (305)
T ss_dssp HHHHTT---SEEEECCCCHH
T ss_pred HHHHce---eEeCCCCCHHH
Confidence 999999 68888877643
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=7.6e-12 Score=119.07 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=93.1
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcE--------------------
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF-------------------- 228 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~-------------------- 228 (341)
-++++.+.|...+.. -+.+..+||+||||+|||++|+++|+.+.+..
T Consensus 6 w~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 345666666666543 25677899999999999999999999886432
Q ss_pred ----EEeechhhhhhhcCCchHHHHHHHHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC
Q psy15087 229 ----INLDISTLTDKLYGESPKLATAIFSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD 300 (341)
Q Consensus 229 ----i~i~~s~l~~~~~g~~~~~i~~lf~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~ 300 (341)
+.++... .........++.+...+.. ..+.|++|||+|.+.. ...+.|+..++.
T Consensus 73 ~~d~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEe---- 134 (334)
T 1a5t_A 73 HPDYYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEE---- 134 (334)
T ss_dssp CTTEEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTS----
T ss_pred CCCEEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcC----
Confidence 2222110 0001122345666665543 2458999999999842 224566776664
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCcCC
Q psy15087 301 KNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338 (341)
Q Consensus 301 ~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~e~ 338 (341)
++.++++|.+||.++.+.+++++|+. .+.++.|+.++
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~ 171 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQY 171 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred CCCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHH
Confidence 34568888889999999999999985 58888887653
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=7.4e-14 Score=143.08 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe----echhhhhhhc
Q psy15087 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINL----DISTLTDKLY 241 (341)
Q Consensus 166 dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i----~~s~l~~~~~ 241 (341)
.|+|++.+|+.+...+.... +..... ...+...+|||+||||||||++|+++|..++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~g~--~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGV--PKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCC--CEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhCCC--cccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 58999999888754443211 000001 1123445899999999999999999999987665542 2222222111
Q ss_pred -----CCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC---------CCCCCCEEE
Q psy15087 242 -----GESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT---------TDKNIDIII 307 (341)
Q Consensus 242 -----g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~---------~~~~~~viV 307 (341)
|... .....+..+ ..+|+||||||++... .+..|+..|+... ...+.++.|
T Consensus 373 ~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred ecccccccc-ccCCeeEec---CCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1110 011223333 3489999999997422 2345555555321 112346889
Q ss_pred EEEeCCCC-------------CCcHHHHccCCc-eEEecCCCc
Q psy15087 308 MGATNRPD-------------DIDPAIARRMPK-KYHIKLPLL 336 (341)
Q Consensus 308 IatTN~~~-------------~ld~al~rRf~~-~i~i~lP~~ 336 (341)
|+|||++. .+++++++||+. .+..+.|+.
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~ 480 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGE 480 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHH
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCH
Confidence 99999986 899999999975 445566653
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=2.2e-11 Score=105.05 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=60.3
Q ss_pred cCcccccccCc----HHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEe
Q psy15087 160 INGSWKNIAGL----EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINL 231 (341)
Q Consensus 160 ~~~~~~dI~G~----~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i 231 (341)
.+.+|+++++. ..+.+.+.+.+.. .. ...+.+++|+||||||||+|+++++..+ |..++.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN----------FN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh----------cc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 35688887753 3333333333322 11 2346789999999999999999999877 6677777
Q ss_pred echhhhhhhcCCchH-HHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 232 DISTLTDKLYGESPK-LATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 232 ~~s~l~~~~~g~~~~-~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
+..++...+...... ........ -..|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 777765443211000 00011111 226789999999853
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.19 E-value=1.3e-11 Score=126.60 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=42.8
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.+..|++++|++.+++.+...+.. ..+++|+||||||||++|+++|..+.
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 356799999999999888777643 35899999999999999999999884
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.16 E-value=8.1e-11 Score=136.50 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=85.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHH-HHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHH-H--------------hcCCe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKAT-AKEANVSFINLDISTLTDKLYGESPKLATAIFSLA-E--------------KIQPC 261 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkal-A~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a-~--------------~~~p~ 261 (341)
...++|||+||||||||++|+.+ +...+..++.++++...+ ...+...+... . ...++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 34579999999999999999555 444477888888765442 12233333322 1 12347
Q ss_pred EEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCC------CCEEEEEEeCCCC-----CCcHHHHccCCceEE
Q psy15087 262 IIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKN------IDIIIMGATNRPD-----DIDPAIARRMPKKYH 330 (341)
Q Consensus 262 II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~------~~viVIatTN~~~-----~ld~al~rRf~~~i~ 330 (341)
||||||++.....+. +.+...+++.+++. ..++..... .++.+|||+|++. .|+++++||| ..+.
T Consensus 1339 VlFiDEinmp~~d~y--g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~ 1414 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKY--GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILY 1414 (2695)
T ss_dssp EEEEETTTCSCCCSS--SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEE
T ss_pred EEEeccccccccccc--CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEE
Confidence 999999987433321 22233445555553 223322111 2589999999994 8999999999 6699
Q ss_pred ecCCCcCCC
Q psy15087 331 IKLPLLSSF 339 (341)
Q Consensus 331 i~lP~~e~R 339 (341)
++.|+.+++
T Consensus 1415 i~~P~~~~l 1423 (2695)
T 4akg_A 1415 LGYPSGKSL 1423 (2695)
T ss_dssp CCCCTTTHH
T ss_pred eCCCCHHHH
Confidence 999998764
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.10 E-value=2.6e-10 Score=96.29 Aligned_cols=108 Identities=13% Similarity=0.253 Sum_probs=68.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSR 275 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~ 275 (341)
+...++|+||+|+|||+|+++++..+ |...+.++..++... +....+.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 45679999999999999999999887 666788877765432 11235789999999885322
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC-CCCCCc--HHHHccCCceEEecCC
Q psy15087 276 SSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN-RPDDID--PAIARRMPKKYHIKLP 334 (341)
Q Consensus 276 ~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN-~~~~ld--~al~rRf~~~i~i~lP 334 (341)
. .+.+..+++.+ .... ..++|| |+| .|..+. +.+.+|+..-..+.+.
T Consensus 99 ------~-~~~l~~li~~~---~~~g-~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l~ 148 (149)
T 2kjq_A 99 ------E-QALLFSIFNRF---RNSG-KGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEVK 148 (149)
T ss_dssp ------H-HHHHHHHHHHH---HHHT-CCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCCC
T ss_pred ------H-HHHHHHHHHHH---HHcC-CcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEec
Confidence 1 11222222222 1111 122444 555 454333 8999999877766654
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=8.3e-10 Score=96.62 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=61.8
Q ss_pred cCcccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
.+.+|+++.+.+...+.+.+.+..... ...-...+.+++|+||||||||++|++++..+ +.+++.++++++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVA------EYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHH------HCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHH------HhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 356888988755332222222221111 11101133789999999999999999999887 678888888876
Q ss_pred hhhhcCCc-hHHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 237 TDKLYGES-PKLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 237 ~~~~~g~~-~~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
........ ...+..++.... .+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 65432110 001122333333 2469999999765
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.06 E-value=4.2e-10 Score=108.54 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=94.3
Q ss_pred cccccCcHHHHHHHHHHh-hchhhchhHHhhcCCCCCCceEEE--ECCCCCCHHHHHHHHHHHc---------CCcEEEe
Q psy15087 164 WKNIAGLEHIKKELNQSV-IFPMKNRNLLKESGLLKPPKGILL--YGPPGCGKTMIAKATAKEA---------NVSFINL 231 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v-~~pl~~~~~~~~~g~~~~~~gvLL--~GPpGtGKT~LAkalA~~l---------~~~~i~i 231 (341)
.++++|.+...+.|...+ ...... ....+..++| +||||+|||+|++++++.+ +..++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~--------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSG--------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTS--------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcC--------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 367999999999998877 432110 0024567999 9999999999999998876 4567777
Q ss_pred echhhh------hh---hc-------CCc-hHHHHHHHHHHH-hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHH
Q psy15087 232 DISTLT------DK---LY-------GES-PKLATAIFSLAE-KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293 (341)
Q Consensus 232 ~~s~l~------~~---~~-------g~~-~~~i~~lf~~a~-~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ 293 (341)
++.... .. .. +.. ......+..... ...|.||+|||++.+..... ...+ .+..++..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~~~----~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-IAAE----DLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SCHH----HHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cchH----HHHHHHHH
Confidence 764311 11 01 111 122333333322 24578999999999864211 1112 22333333
Q ss_pred hcCCCCCC-CCCEEEEEEeCCCC---CCc---HHHHccCCceEEecCCCcC
Q psy15087 294 WDGLTTDK-NIDIIIMGATNRPD---DID---PAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 294 ld~~~~~~-~~~viVIatTN~~~---~ld---~al~rRf~~~i~i~lP~~e 337 (341)
+....... ..++.+|+++|.++ .++ +.+.+++..++.++.++.+
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~ 218 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSR 218 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHH
Confidence 33221101 14688888887654 234 6677788766666555543
No 89
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.05 E-value=7.3e-10 Score=107.63 Aligned_cols=149 Identities=21% Similarity=0.314 Sum_probs=98.2
Q ss_pred cccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhhhhh-
Q psy15087 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTLTDK- 239 (341)
Q Consensus 164 ~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l~~~- 239 (341)
++.++|.+...+.+.+.+... .....+||++|++||||+++|+++..... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~ 203 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI------------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI 203 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH
T ss_pred chhhhhccHHhhHHHHHHHHh------------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH
Confidence 446788877777776665542 24456799999999999999999988764 69999999876442
Q ss_pred ----hcCCch-------HHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCC-------CCC
Q psy15087 240 ----LYGESP-------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT-------TDK 301 (341)
Q Consensus 240 ----~~g~~~-------~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~-------~~~ 301 (341)
.+|... ......|..|.. ++||||||+.+.. .++..|+..++... ...
T Consensus 204 ~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 204 FEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCcee
Confidence 222111 011234555544 8999999999842 23444555443211 111
Q ss_pred CCCEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCC
Q psy15087 302 NIDIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSF 339 (341)
Q Consensus 302 ~~~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R 339 (341)
..++.+|+|||.. ..+.+.+..|+.. +.+.+|...+|
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR 313 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRER 313 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGC
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhc
Confidence 2357899999973 2345666667755 77899999887
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.94 E-value=2.2e-09 Score=103.55 Aligned_cols=149 Identities=20% Similarity=0.361 Sum_probs=97.0
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeechhhhhh---
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDISTLTDK--- 239 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s~l~~~--- 239 (341)
.+++|.+....++.+.+... ......||++|++||||+.+|+++....+. .|+.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~ 196 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI------------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAE 196 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHH
T ss_pred ccccccchHHHHHHhhhhhh------------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHH
Confidence 45788888877777665432 133456999999999999999999987754 3999999876432
Q ss_pred --hcCCc-------hHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCC-------CCCC
Q psy15087 240 --LYGES-------PKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT-------DKNI 303 (341)
Q Consensus 240 --~~g~~-------~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~-------~~~~ 303 (341)
.+|.. ...-...|..+. .++||||||+.+.. .++..|+..++.-.. ....
T Consensus 197 ~~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 197 SELFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHHHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred HHhcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceee
Confidence 11110 001123445443 38999999999842 234555555542110 0112
Q ss_pred CEEEEEEeCCC-------CCCcHHHHccCCceEEecCCCcCCCC
Q psy15087 304 DIIIMGATNRP-------DDIDPAIARRMPKKYHIKLPLLSSFS 340 (341)
Q Consensus 304 ~viVIatTN~~-------~~ld~al~rRf~~~i~i~lP~~e~R~ 340 (341)
.+.+|+|||.. ..+.+.+..|+.. +.+.+|...+|.
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~ 305 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERG 305 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGST
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhch
Confidence 57899999963 2344567777765 889999999884
No 91
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.93 E-value=1e-09 Score=97.21 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=79.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH--------cC-CcEEEeechhhhhhhc-------------CC--chHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE--------AN-VSFINLDISTLTDKLY-------------GE--SPKLATAIFSLAE 256 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~--------l~-~~~i~i~~s~l~~~~~-------------g~--~~~~i~~lf~~a~ 256 (341)
.-.|++|+||||||++|.+.+.. .| .+++..++..+..... ++ ....+..++..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 46799999999999999887544 24 6666666555432221 11 112222222112
Q ss_pred hcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCceEEecCCCc
Q psy15087 257 KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 257 ~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~~i~i~lP~~ 336 (341)
....+||+|||++.+.+.+.... +.. .++..+... ....+-+|.+++.++.|+.++++|+...+++..|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~-e~~-----rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS-KIP-----ENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC-CCC-----HHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccc-hhH-----HHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 23468999999999976542211 111 133333322 223466778888899999999999999998887665
Q ss_pred CC
Q psy15087 337 SS 338 (341)
Q Consensus 337 e~ 338 (341)
..
T Consensus 156 ~~ 157 (199)
T 2r2a_A 156 GM 157 (199)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.89 E-value=7.7e-10 Score=104.65 Aligned_cols=118 Identities=11% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSR 275 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~ 275 (341)
.+.+.++|+||||||||+||.++|...+. .|+.....+..+.+..+.+..+..++....+.. +||||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 34556899999999999999999987544 455553233333333445556666666666544 99999999985443
Q ss_pred CCC-chHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHH
Q psy15087 276 SSS-DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPA 320 (341)
Q Consensus 276 ~~~-~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~a 320 (341)
... ......+...+++..|.++... .++.+|+++|. ...+++
T Consensus 199 ~~~s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 199 GGNTTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHH--HTCEEEEECCC-SSCSSS
T ss_pred ccccccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeCC-cccchh
Confidence 220 0000112233334444333221 24678888884 444443
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.89 E-value=3.7e-09 Score=99.58 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=47.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhhhhcCCch-HHHHHHHHHHHhcCCeEEEEcccchh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTDKLYGESP-KLATAIFSLAEKIQPCIIFIDEIDSL 271 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~~~~g~~~-~~i~~lf~~a~~~~p~II~IDEiD~l 271 (341)
..+++|+||||||||+||.++|.++ +.+++.++++++......... ......+.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5789999999999999999998865 478888888877665432211 11111222222 3469999999764
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.74 E-value=5.5e-09 Score=103.28 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=84.7
Q ss_pred ccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHH-HHHcCCcEEEee-ch---hhhhh
Q psy15087 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKAT-AKEANVSFINLD-IS---TLTDK 239 (341)
Q Consensus 165 ~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkal-A~~l~~~~i~i~-~s---~l~~~ 239 (341)
..|.|++.+|+.|.-++...... .+...+|||.|+||| ||++|+++ +..+....+... ++ .+...
T Consensus 213 apI~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s 282 (506)
T 3f8t_A 213 APLPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV 282 (506)
T ss_dssp CCSTTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE
T ss_pred cccCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE
Confidence 34889999988886665432111 122347999999999 99999999 776544333211 11 11111
Q ss_pred hcCCc-hHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhc-------CCCCCCCCCEEEEEEe
Q psy15087 240 LYGES-PKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD-------GLTTDKNIDIIIMGAT 311 (341)
Q Consensus 240 ~~g~~-~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld-------~~~~~~~~~viVIatT 311 (341)
..+.. ...-...+..|.. +|+|+|||+.+... .+..|+..|+ |. .-+.++.||||+
T Consensus 283 ~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~~-----------~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~ 346 (506)
T 3f8t_A 283 LKEDRGWALRAGAAVLADG---GILAVDHLEGAPEP-----------HRWALMEAMDKGTVTVDGI--ALNARCAVLAAI 346 (506)
T ss_dssp EEESSSEEEEECHHHHTTT---SEEEEECCTTCCHH-----------HHHHHHHHHHHSEEEETTE--EEECCCEEEEEE
T ss_pred EEcCCCcccCCCeeEEcCC---CeeehHhhhhCCHH-----------HHHHHHHHHhCCcEEECCE--EcCCCeEEEEEe
Confidence 10000 0111223334433 89999999997432 2334444443 22 223568999999
Q ss_pred CCCC-----------CCcHHHHccCCceE-EecCCCcC
Q psy15087 312 NRPD-----------DIDPAIARRMPKKY-HIKLPLLS 337 (341)
Q Consensus 312 N~~~-----------~ld~al~rRf~~~i-~i~lP~~e 337 (341)
|+.+ .|.+++++||+..+ .++.|+.+
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred CcccccCCCCCccccCCChHHhhheeeEEEecCCCChh
Confidence 9865 78899999998644 35556544
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.74 E-value=3.1e-08 Score=87.85 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=62.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS 278 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~ 278 (341)
..+++||+||||||||++|.++|+.+...++....+. ..+. +..+ ....||+|||+|.-
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~l--~~~kIiiLDEad~~------- 115 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEPL--TDTKVAMLDDATTT------- 115 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGGG--TTCSSEEEEEECHH-------
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hccc--CCCCEEEEECCCch-------
Confidence 3467999999999999999999999865543321110 0000 0111 12359999999852
Q ss_pred chHHHHHHHHHHHHHhcCCC----CCCCC-----CEEEEEEeCCC---CCCcHHHHccCCceEEecCC
Q psy15087 279 DHEATAQLKSIFLSKWDGLT----TDKNI-----DIIIMGATNRP---DDIDPAIARRMPKKYHIKLP 334 (341)
Q Consensus 279 ~~~~~~~i~~~ll~~ld~~~----~~~~~-----~viVIatTN~~---~~ld~al~rRf~~~i~i~lP 334 (341)
..+.+...+.+.++|.. ...+. ...+|.|||.. +..-+.|.+|+. .+.++.|
T Consensus 116 ---~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~ 179 (212)
T 1tue_A 116 ---CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPNA 179 (212)
T ss_dssp ---HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCSC
T ss_pred ---hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCCC
Confidence 11222234455566631 11111 13467788873 233467888875 3655543
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=4.4e-08 Score=113.95 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=86.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD 279 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~ 279 (341)
..++++.||+|||||.+++++|+.+|.+++.++|++-+. ...+..+|..+...+ +++++|||+++....
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~ev---- 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKV---- 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHH----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHH----
Confidence 467999999999999999999999999999999987543 344566676665543 899999999974321
Q ss_pred hHHHHHHHHHHHHHhc---------CCCCCCCCCEEEEEEeCC----CCCCcHHHHccCCceEEecCCCcC
Q psy15087 280 HEATAQLKSIFLSKWD---------GLTTDKNIDIIIMGATNR----PDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 280 ~~~~~~i~~~ll~~ld---------~~~~~~~~~viVIatTN~----~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
..+..+.+..+...+. |....-..++.|++|.|+ ...+++++++||. .+.+..||.+
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr-~v~m~~Pd~~ 783 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR-EFSMKSPQSG 783 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE-EEECCCCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE-EEEeeCCCHH
Confidence 1112122222222221 111112335778899994 4578999999995 4899999864
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=4.9e-07 Score=84.72 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=44.6
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
..-..++|.+...+.|.+ +. . ..++++||+|+|||+|++.+++..+..++.+++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~---------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR---------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC---------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-hc---------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 345668999988888877 42 2 47999999999999999999998877777776653
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.64 E-value=9.2e-07 Score=82.70 Aligned_cols=55 Identities=24% Similarity=0.182 Sum_probs=43.5
Q ss_pred cccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
..-+.++|.+...+.|.+.+.. ...++++||+|+|||+|++.+++..+ .+.+++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CChHhcCChHHHHHHHHHHHhc----------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 3445689999999998887542 15799999999999999999999886 5555554
No 99
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.54 E-value=1.7e-07 Score=106.26 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=74.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh----hhhcC------------CchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT----DKLYG------------ESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~----~~~~g------------~~~~~i~~lf~~a~~ 257 (341)
+.++++++|+||||||||+||.+++.+. |.....++..... ....| ..+..++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5778899999999999999999997765 4455555544321 12222 345677788888888
Q ss_pred cCCeEEEEcccchhhhcC---C-CCc-h-HHHHHHHHHHHHHhcCCCCCCCCCEEEEEE
Q psy15087 258 IQPCIIFIDEIDSLLRSR---S-SSD-H-EATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~~~---~-~~~-~-~~~~~i~~~ll~~ld~~~~~~~~~viVIat 310 (341)
.+|++|||||++.+.+.. . .++ . ....+++.+++..|.+..... +++||.+
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~--~v~VI~t 1560 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLIFI 1560 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT--TCEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhC--CcEEEEE
Confidence 999999999999887532 1 111 1 113456666777776665543 3555544
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.38 E-value=6.3e-07 Score=105.24 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=80.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEeechhhhhhhcCCchHHHHHHHHHH----H------------hcCCe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA-NVSFINLDISTLTDKLYGESPKLATAIFSLA----E------------KIQPC 261 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a----~------------~~~p~ 261 (341)
..++|||+||||||||++++.....+ +.+++.++++.-.. ...+...+... . ..+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 45679999999999998876654444 66677787765432 22233333211 0 01225
Q ss_pred EEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCC------CCCCEEEEEEeCCC-----CCCcHHHHccCCceEE
Q psy15087 262 IIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTD------KNIDIIIMGATNRP-----DDIDPAIARRMPKKYH 330 (341)
Q Consensus 262 II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~------~~~~viVIatTN~~-----~~ld~al~rRf~~~i~ 330 (341)
|+||||++.-..+. -+.+....++.+++..- ++... .-.++.+|||+|+| ..+++.++|||.. +.
T Consensus 1377 VlFiDDiNmp~~D~--yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~ 1452 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK--YGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LL 1452 (3245)
T ss_dssp EEEETTTTCCCCCT--TSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EE
T ss_pred EEEecccCCCCccc--cccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-EE
Confidence 99999998743222 12222334455555431 22111 11358899999987 3699999999976 99
Q ss_pred ecCCCcCC
Q psy15087 331 IKLPLLSS 338 (341)
Q Consensus 331 i~lP~~e~ 338 (341)
++.|+.++
T Consensus 1453 i~~ps~es 1460 (3245)
T 3vkg_A 1453 VDFPSTSS 1460 (3245)
T ss_dssp CCCCCHHH
T ss_pred eCCCCHHH
Confidence 99998653
No 101
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.37 E-value=1.9e-07 Score=90.29 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhh-cC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLR-SR 275 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~-~~ 275 (341)
+.++..++|+||||+|||+|+++++..++..++.+..+.-. ....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 46677899999999999999999999988776654332210 000111 122446789999998864 22
Q ss_pred CC-CchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHc
Q psy15087 276 SS-SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323 (341)
Q Consensus 276 ~~-~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~r 323 (341)
.. ...... ....+...++|. +.|++++|+++.+ +++++
T Consensus 234 ~l~~~~~~~--~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 234 DLPSGQGIN--NLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp TCCCCSHHH--HHHTTHHHHHCS-------SCEEECCSSSCCE-EECCC
T ss_pred hccccCcch--HHHHHHHHhcCC-------CeEeeccCchhhH-HHhhc
Confidence 11 111111 123344455542 4567778888877 44444
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.33 E-value=1.4e-06 Score=102.34 Aligned_cols=130 Identities=16% Similarity=0.115 Sum_probs=83.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccchhhhcCCCCc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD 279 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~~~ 279 (341)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+..+|.-+-.. .+..++|||+++....-+..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSvv 676 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSAV 676 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHHH
Confidence 346789999999999999999999999999999986433 23455566555443 47889999999732211000
Q ss_pred hHHHHHHHHHHHHH-----hc-CCCCCCCCCEEEEEEeCC----CCCCcHHHHccCCceEEecCCCcC
Q psy15087 280 HEATAQLKSIFLSK-----WD-GLTTDKNIDIIIMGATNR----PDDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 280 ~~~~~~i~~~ll~~-----ld-~~~~~~~~~viVIatTN~----~~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.+....+...+... +. |....-...+.|++|.|+ ...+++++.+||.. +.+..||.+
T Consensus 677 ~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v~m~~Pd~~ 743 (3245)
T 3vkg_A 677 SQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-MAMIKPDRE 743 (3245)
T ss_dssp HHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE-EECCSCCHH
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE-EEEeCCCHH
Confidence 00111111111111 01 211112335778999994 45799999999976 999999864
No 103
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.22 E-value=1.3e-06 Score=80.42 Aligned_cols=27 Identities=41% Similarity=0.566 Sum_probs=24.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANV 226 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~ 226 (341)
.++++|+||||||||++|+++|+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998654
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=1.3e-05 Score=69.22 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSF 228 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~ 228 (341)
.+.|.||+|+|||+|++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886544
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.04 E-value=2.9e-05 Score=68.17 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.+...++|+||||+|||+|++.++... +..++.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3556679999999999999999998654 44444443
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.93 E-value=8.7e-06 Score=69.09 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=31.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
+..++|.|+||+|||+++++++..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3568999999999999999999999998887665433
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.92 E-value=2.5e-05 Score=88.77 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=75.0
Q ss_pred hhHHhhcC--CCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh----cC--------CchHHHHH
Q psy15087 188 RNLLKESG--LLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL----YG--------ESPKLATA 250 (341)
Q Consensus 188 ~~~~~~~g--~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~----~g--------~~~~~i~~ 250 (341)
+++.+-.+ .+.++..++|+|+||+|||+||..+|..+ +.++++++........ +| ..+..+..
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~ 797 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHH
Confidence 34444442 36788889999999999999999998876 4568888776544332 22 11122444
Q ss_pred HHHHHHh----cCCeEEEEcccchhhh-c----C-CCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeC
Q psy15087 251 IFSLAEK----IQPCIIFIDEIDSLLR-S----R-SSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312 (341)
Q Consensus 251 lf~~a~~----~~p~II~IDEiD~l~~-~----~-~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN 312 (341)
++..++. ..|++||||.+..+.. . + .+...+...+.+..++..|..+.... ++.||++..
T Consensus 798 i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~--~v~VI~l~Q 867 (2050)
T 3cmu_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLIFINQ 867 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT--TCEEEEEEC
T ss_pred HHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHh--CCEEEEecc
Confidence 4444433 6889999999999875 2 1 11111222333556666666555433 356665543
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.91 E-value=1.5e-05 Score=70.80 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=49.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH--c-------CCcEEEeechhh------hh--hhcCC---------------c
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE--A-------NVSFINLDISTL------TD--KLYGE---------------S 244 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~--l-------~~~~i~i~~s~l------~~--~~~g~---------------~ 244 (341)
+.+..-++|+||||+|||+|++.+|.. + +...+.++.... .. ..++. .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 456677999999999999999999984 2 345666654331 00 00111 1
Q ss_pred -hH---HHHHHHHHHHhcCCeEEEEcccchhhh
Q psy15087 245 -PK---LATAIFSLAEKIQPCIIFIDEIDSLLR 273 (341)
Q Consensus 245 -~~---~i~~lf~~a~~~~p~II~IDEiD~l~~ 273 (341)
.. .+..+...+....|.+|+|||+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 122344445556889999999998764
No 109
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.89 E-value=3.2e-05 Score=74.13 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=50.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhh----h------------cCCchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDK----L------------YGESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~----~------------~g~~~~~i~~lf~~a~~ 257 (341)
+.+..-++|+||||||||+|+..++..+ +..++.++....... . ....+..+..+....+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4566679999999999999999998764 556666665432110 0 01122233333334445
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..+.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6789999999988764
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.88 E-value=8.5e-06 Score=69.68 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=30.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+..++|.||||||||++++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567999999999999999999999999988764
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.87 E-value=2.4e-05 Score=68.36 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=30.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
+.+..-++|+||||+|||++++.+|...+.+.+.++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 46667799999999999999999988656666666644
No 112
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.86 E-value=5.3e-05 Score=72.86 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=50.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhh----cC------------CchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL----YG------------ESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~----~g------------~~~~~i~~lf~~a~~ 257 (341)
+.+...++|+||||+|||+||..+|... +.+++.++........ .| ..+..+..+....+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4566779999999999999999997654 5566666654321111 11 112233333333445
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..+++|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 6789999999999874
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.82 E-value=0.00011 Score=65.32 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA 221 (341)
+.+..-+.|.||+|+|||+|++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4566779999999999999999998
No 114
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=1.2e-05 Score=69.95 Aligned_cols=35 Identities=46% Similarity=0.622 Sum_probs=30.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++..++|.||||||||++++.+|..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 45668999999999999999999999999988754
No 115
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.80 E-value=2.4e-05 Score=74.76 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=49.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh----hhcC------------CchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD----KLYG------------ESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~----~~~g------------~~~~~i~~lf~~a~~ 257 (341)
+.+..-++|+||||+|||+||..++... +...+.++...... ...| ..+..+..+...+..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 4566779999999999999999997654 45555555432111 1111 112223333334445
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6789999999999863
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.79 E-value=6.5e-05 Score=70.73 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=51.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechhh--hh------hhcCC----------------
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDISTL--TD------KLYGE---------------- 243 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~l--~~------~~~g~---------------- 243 (341)
+.+..-++|+||||+|||++|..+|... +...++++.... .. ...|.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4566779999999999999999998764 445666655432 00 00111
Q ss_pred ch---HHHHHHHHHHHh-cCCeEEEEcccchhhhc
Q psy15087 244 SP---KLATAIFSLAEK-IQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 244 ~~---~~i~~lf~~a~~-~~p~II~IDEiD~l~~~ 274 (341)
.+ ..+..+...... ..+.+|+||.+..+...
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 123344445555 67899999999998743
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.79 E-value=5.9e-05 Score=71.70 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechhh------hh--hhcC----------------C
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDISTL------TD--KLYG----------------E 243 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~l------~~--~~~g----------------~ 243 (341)
+.+..-++|+||||+|||++|..+|... +...++++.... .. ...| .
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 4566678999999999999999998862 445666654431 00 0011 1
Q ss_pred ch---HHHHHHHHHHHh--cCCeEEEEcccchhhhc
Q psy15087 244 SP---KLATAIFSLAEK--IQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 244 ~~---~~i~~lf~~a~~--~~p~II~IDEiD~l~~~ 274 (341)
.+ ..+..+...... ..+.+|+||.+..+...
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 11 122233344555 67899999999998743
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=6.5e-05 Score=74.08 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCCcCccccccc-CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 156 VPEEINGSWKNIA-GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 156 ~p~~~~~~~~dI~-G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.|...+.+|+++- +|..+...+...+.. ....+++.||||||||+++.+++..+
T Consensus 15 ~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~---------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 15 VPRGSHMTFDDLTEGQKNAFNIVMKAIKE---------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------CCSSCCCHHHHHHHHHHHHHHHS---------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCCccccCCHHHHHHHHHHHHHHhc---------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444567787764 555555555444322 12379999999999999999998776
No 119
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.73 E-value=0.00012 Score=66.22 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=32.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
..+..++|.||||||||++++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 456779999999999999999999999866666766554
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.72 E-value=4.3e-05 Score=73.23 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=49.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh----hhcC------------CchHHHHHHHHHHHh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD----KLYG------------ESPKLATAIFSLAEK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~----~~~g------------~~~~~i~~lf~~a~~ 257 (341)
+.+...++|+||||+|||+||..+|... +.+++.++...... ...| ..+.....+....+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3566779999999999999999997654 55666666532111 1111 111222222233345
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999864
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.71 E-value=2.5e-05 Score=66.55 Aligned_cols=34 Identities=38% Similarity=0.638 Sum_probs=30.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.+..++|+|+||||||++++.++..++.+++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 4567999999999999999999999998887764
No 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.70 E-value=0.00023 Score=63.04 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=27.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.+...++|+||||+|||+++..+|... +...+.++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566779999999999999998886543 44555544
No 123
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.69 E-value=2.7e-05 Score=65.28 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=28.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++|.||||||||++++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999999988765
No 124
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.68 E-value=0.00015 Score=63.50 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+..-+.|.||+|+|||+|++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566679999999999999999999854
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.67 E-value=2.7e-05 Score=66.73 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=30.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+.-++|.|+||||||++++.++..++.+++..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 44567999999999999999999999998887753
No 126
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.67 E-value=2.6e-05 Score=66.18 Aligned_cols=31 Identities=35% Similarity=0.635 Sum_probs=28.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++|.||||||||++++.+|..++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999999887643
No 127
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.65 E-value=2.9e-05 Score=66.27 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=28.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.|+|.|+||||||++|+.+|..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999987754
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.63 E-value=4.5e-05 Score=64.26 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=27.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+..+.|.||||||||++++.+|..++.+++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 34699999999999999999999999876653
No 129
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.63 E-value=3.4e-05 Score=64.93 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=29.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+++|.|+||||||++++.+|..++.+++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999998754
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.62 E-value=3.5e-05 Score=66.23 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=29.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH-cCCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE-ANVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~-l~~~~i~i~ 232 (341)
.+..++|+|+||||||++++.+|.. +|++++..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3457999999999999999999999 788887754
No 131
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.59 E-value=4.7e-05 Score=66.09 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+..++|.|+||||||++|+.++..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999999988775
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.59 E-value=6.2e-05 Score=65.18 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=22.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc---CCcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA---NVSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i 231 (341)
.-++++||||+|||+++..++..+ +...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997776553 5544433
No 133
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=4.3e-05 Score=65.27 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+.-|+|.|+||||||++|+.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999999887664
No 134
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.57 E-value=4.6e-05 Score=65.37 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+..++|.|+||||||++++.+|..++.+++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 34567999999999999999999999998877653
No 135
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.57 E-value=5e-05 Score=66.95 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=29.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
++..++|.|+||||||++++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999887765
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.54 E-value=4.9e-05 Score=65.12 Aligned_cols=39 Identities=33% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
.++..+.|.||||+|||++++.++...+...+.++...+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 456679999999999999999999987777777776554
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.54 E-value=4.8e-05 Score=63.47 Aligned_cols=29 Identities=41% Similarity=0.564 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
-++|.||||||||++++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8899888775
No 138
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.54 E-value=0.00073 Score=60.59 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=25.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
...+++.|+||+|||+++-.+|..+ |..+..++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3469999999999999999998775 65554433
No 139
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.53 E-value=5.7e-05 Score=63.53 Aligned_cols=31 Identities=29% Similarity=0.660 Sum_probs=28.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++|.|+||||||++++.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999998887643
No 140
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.53 E-value=5.8e-05 Score=68.59 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=29.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.++|.||||||||++|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999988765
No 141
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.52 E-value=7.1e-05 Score=64.99 Aligned_cols=33 Identities=33% Similarity=0.593 Sum_probs=29.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+.-|+|.|+||+|||++++.++..++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 557999999999999999999999998887644
No 142
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.51 E-value=0.00019 Score=65.22 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=31.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH---cCCcEEEeechhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE---ANVSFINLDISTLT 237 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~---l~~~~i~i~~s~l~ 237 (341)
+.-|+|.|+||||||++|+.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 456899999999999999999998 68888866655443
No 143
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.50 E-value=0.0009 Score=67.71 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=45.3
Q ss_pred eEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC--CCcHHHHccCCceEEecCCCc
Q psy15087 261 CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD--DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 261 ~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~--~ld~al~rRf~~~i~i~lP~~ 336 (341)
-+|+|||++.+..... ......+..+...- ...++.+|.+|.+|. .++..++.-|..++.+.+.+.
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCH
Confidence 5899999998865321 12222333333321 234699999999987 799999998888888877654
No 144
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.49 E-value=6.2e-05 Score=64.17 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=28.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+..++|.|+||||||++++.+|+.++.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 34689999999999999999999999877664
No 145
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.49 E-value=0.00018 Score=66.66 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~l 236 (341)
..+..++|.||||+|||++++.++.+++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 346679999999999999999999998545566665433
No 146
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.48 E-value=6.1e-05 Score=66.78 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+..++|.|+||||||++++.+|..++.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999999888765
No 147
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.48 E-value=6.4e-05 Score=64.64 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+.-++|.|+||||||++++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999887764
No 148
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.48 E-value=0.00057 Score=61.11 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=43.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh-------hhhhhcCCc-----hHHHHHHHHHHHh----cC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST-------LTDKLYGES-----PKLATAIFSLAEK----IQ 259 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~-------l~~~~~g~~-----~~~i~~lf~~a~~----~~ 259 (341)
+..-++++||||+|||+++..++..+ +..++.+.... +.+. .|-. ......++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 34457889999999999998887766 44555443221 1111 1110 0112345555444 35
Q ss_pred CeEEEEcccchh
Q psy15087 260 PCIIFIDEIDSL 271 (341)
Q Consensus 260 p~II~IDEiD~l 271 (341)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999876
No 149
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.47 E-value=0.00013 Score=65.75 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++..++|.||||||||++|+.+++.++.+++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 45678999999999999999999999998877653
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.46 E-value=6.2e-05 Score=64.12 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=27.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-----CcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN-----VSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~-----~~~i~i 231 (341)
.-++|.||||||||++++.++..++ .+++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4689999999999999999999887 666654
No 151
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.46 E-value=6.6e-05 Score=63.74 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=23.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
+..++|.|+||||||++++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 152
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.46 E-value=0.0002 Score=69.64 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=47.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---------CCcEEEeechhhhh--------hhcCC----------------
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---------NVSFINLDISTLTD--------KLYGE---------------- 243 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---------~~~~i~i~~s~l~~--------~~~g~---------------- 243 (341)
+.+..-++|+||||||||+|++.+|... +...++++...... ..+|-
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 5667779999999999999999776433 23355555433100 00111
Q ss_pred c---hHHHHHHHHHHHhcCCeEEEEcccchhhhc
Q psy15087 244 S---PKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 244 ~---~~~i~~lf~~a~~~~p~II~IDEiD~l~~~ 274 (341)
. ...+..+...+....|.+|+||++-.+...
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 112233334445567899999999887643
No 153
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.45 E-value=0.00055 Score=69.05 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=37.7
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
.-..++|.+...+.|.+.+... ....+.|+++||+|+|||+||+.++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3456899999999998876531 12345689999999999999999964
No 154
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.45 E-value=9e-05 Score=66.09 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=29.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+..++|.|+||||||++++.+|..++.+++..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3456799999999999999999999999887775
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=9.7e-05 Score=62.47 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
++..++|.||||+|||++++.++..+|..++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 345689999999999999999999998777664
No 156
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.45 E-value=0.00025 Score=79.75 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=51.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh----hhhcCC--------chHHHHHHHHHH----Hh
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT----DKLYGE--------SPKLATAIFSLA----EK 257 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~----~~~~g~--------~~~~i~~lf~~a----~~ 257 (341)
+.++..++|+||||+|||+||..+|... +.++..++..... ....|- .+..+..++..+ +.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~ 808 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHc
Confidence 5778889999999999999999997765 4566666654332 111221 111223333333 35
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..|++|+||.+..+.+
T Consensus 809 ~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALTP 824 (1706)
T ss_dssp TCCSEEEESCSTTCCC
T ss_pred cCCCEEEEechhhhcc
Confidence 7899999999999874
No 157
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.45 E-value=6.5e-05 Score=63.38 Aligned_cols=30 Identities=37% Similarity=0.419 Sum_probs=24.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHH-HcCCcEEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAK-EANVSFIN 230 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~-~l~~~~i~ 230 (341)
.-++|.||||||||++|+.++. .++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999998 56655444
No 158
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.45 E-value=0.00018 Score=68.64 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+..-+.|+||||+|||+|++.++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566679999999999999999999876
No 159
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.44 E-value=7.6e-05 Score=65.42 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=27.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|.||||||||++|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999999888776
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.44 E-value=8.9e-05 Score=64.27 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=28.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+.-++|.|+||||||++++.++..++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999998777654
No 161
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.44 E-value=7.2e-05 Score=63.73 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=28.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+..++|.|+||||||++++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999999887765
No 162
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.43 E-value=8.4e-05 Score=62.24 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=27.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.++|.|+||||||++++.++..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4889999999999999999999998887643
No 163
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.43 E-value=9.2e-05 Score=66.05 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
..++-++|.||||+||+|.|+.||+.++.+.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 556778999999999999999999999877654
No 164
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.43 E-value=0.00025 Score=66.38 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+.+..-++|+||||+|||++|..+|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455667999999999999999999875
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.43 E-value=8.2e-05 Score=65.15 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=27.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|.||||||||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999888765
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.40 E-value=0.00014 Score=63.30 Aligned_cols=33 Identities=33% Similarity=0.651 Sum_probs=27.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.++..+.|.||+|||||++++.++..+|..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 345678999999999999999999999876655
No 167
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.39 E-value=6.4e-05 Score=66.33 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+..++|.||||||||++++.+|..++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999999999766553
No 168
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.37 E-value=9.7e-05 Score=75.12 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=25.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i 231 (341)
...+++.||||||||+++.+++..+ +.++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3578999999999999999997754 5555544
No 169
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.36 E-value=0.00049 Score=64.83 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=44.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCcEEEeechhhhh----hhcCC-----------chHHH-HHHHHH---HHh
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTD----KLYGE-----------SPKLA-TAIFSL---AEK 257 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l-----~~~~i~i~~s~l~~----~~~g~-----------~~~~i-~~lf~~---a~~ 257 (341)
-++++||||+|||+|+-.++... +...++++..+-.. ...|- ....+ -.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988875543 55677776543221 11111 11111 112222 245
Q ss_pred cCCeEEEEcccchhhh
Q psy15087 258 IQPCIIFIDEIDSLLR 273 (341)
Q Consensus 258 ~~p~II~IDEiD~l~~ 273 (341)
..|.+|+||-+..+.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 5789999999999974
No 170
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.36 E-value=0.0001 Score=64.95 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=28.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+..++|.|+||||||++++.+|..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999999888775
No 171
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.34 E-value=0.00026 Score=67.76 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=45.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeech-hhh---------hhhcCCchHHHHHHHHHHHhcCCeEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDIS-TLT---------DKLYGESPKLATAIFSLAEKIQPCIIF 264 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s-~l~---------~~~~g~~~~~i~~lf~~a~~~~p~II~ 264 (341)
+...+++.||+|||||+++++++..+ +..++.+.-+ ++. ....+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34468999999999999999998766 2333333211 110 001121122345566777788999999
Q ss_pred Ecccc
Q psy15087 265 IDEID 269 (341)
Q Consensus 265 IDEiD 269 (341)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99984
No 172
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.33 E-value=0.0028 Score=59.27 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh-------hhh--------c-----CCchHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT-------DKL--------Y-----GESPKLATAIFSL 254 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~-------~~~--------~-----g~~~~~i~~lf~~ 254 (341)
.++.-+++.||+|+|||+++..+|..+ +..+..+++.... ..| + ++........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999998766 4444444432110 001 0 1111222334445
Q ss_pred HHhcCCeEEEEcccch
Q psy15087 255 AEKIQPCIIFIDEIDS 270 (341)
Q Consensus 255 a~~~~p~II~IDEiD~ 270 (341)
+....+.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5666889999998753
No 173
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.33 E-value=0.00015 Score=64.10 Aligned_cols=30 Identities=40% Similarity=0.586 Sum_probs=26.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|.||||+||+|.|+.||+.+|.+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 378999999999999999999999876653
No 174
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.33 E-value=0.00039 Score=65.44 Aligned_cols=119 Identities=12% Similarity=0.030 Sum_probs=67.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CC-cEEEeechhhhhhhcCCchHHHHHHHHHHHhcCCeEEEEcccch-hh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NV-SFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDS-LL 272 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~-~~i~i~~s~l~~~~~g~~~~~i~~lf~~a~~~~p~II~IDEiD~-l~ 272 (341)
+.+..+||+||+|.||+..++.+++.+ +. ++..+... . ..+.......+.....-....|++|||++. +.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 345689999999999999999998865 32 22222111 0 011122222222222234568999999988 63
Q ss_pred hcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCC------CCCcHHHHccCCceEEecCCCcC
Q psy15087 273 RSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRP------DDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 273 ~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~------~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.. ..+.|+..++.. +..+++|.+++.+ ..+-+++.+|+. .+.+..|+..
T Consensus 91 ~~-----------~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~ 145 (343)
T 1jr3_D 91 AA-----------INEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQA 145 (343)
T ss_dssp TT-----------HHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTT
T ss_pred hH-----------HHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHH
Confidence 11 234455655532 2234444444432 245678888864 5777776654
No 175
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.32 E-value=0.00034 Score=63.94 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=43.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CcEEEeech--hhhh--------hhcCCchHHHHHHHHHHHhcCCeEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN----VSFINLDIS--TLTD--------KLYGESPKLATAIFSLAEKIQPCII 263 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~----~~~i~i~~s--~l~~--------~~~g~~~~~i~~lf~~a~~~~p~II 263 (341)
.+...++|.||+|+|||+++++++..+. ..++....+ .+.. ..+|.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 4556789999999999999999988652 222221110 0000 0111111233555566666689999
Q ss_pred EEcccc
Q psy15087 264 FIDEID 269 (341)
Q Consensus 264 ~IDEiD 269 (341)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 176
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.30 E-value=0.0017 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-++|+||||+|||+|++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999998643
No 177
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.0024 Score=56.44 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH----cCCcEEEeechh----hhhhh----------------------------
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE----ANVSFINLDIST----LTDKL---------------------------- 240 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~----l~~~~i~i~~s~----l~~~~---------------------------- 240 (341)
+.+..-++++|+||+|||++|..+|.. .+.+++.++... +....
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 106 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhc
Confidence 456677999999999999999887543 255555544321 11000
Q ss_pred ----------cCCchHHHHHHHHHHHhcCCeEEEEcccchhhhc
Q psy15087 241 ----------YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274 (341)
Q Consensus 241 ----------~g~~~~~i~~lf~~a~~~~p~II~IDEiD~l~~~ 274 (341)
.......+..+........+.++++|.+..+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred ccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 0001123344555667778899999999888643
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.29 E-value=0.00024 Score=60.39 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
++..+.|.|++|||||++++.++..+ |.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568899999999999999999988 889988876544
No 179
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.26 E-value=0.00014 Score=63.74 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=27.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.++|.|+||||||++++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999999888776
No 180
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.26 E-value=0.00023 Score=61.41 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=29.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA-NVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i~ 232 (341)
.+.-+.|.|+||||||++++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 34568999999999999999999998 57777654
No 181
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.25 E-value=0.0009 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.8
Q ss_pred CCCceEEEECCCCCCHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKA 219 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAka 219 (341)
.++.-+.|.||+|||||+|+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3455689999999999999994
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=0.00026 Score=62.22 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+.|.||+|||||++++.++..++.+++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4689999999999999999999999877653
No 183
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.24 E-value=0.001 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=28.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~ 232 (341)
+.+..-+++.|+||+|||+++..+|... |.++..++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5667789999999999999999997654 44665554
No 184
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.23 E-value=0.0002 Score=67.67 Aligned_cols=35 Identities=37% Similarity=0.577 Sum_probs=30.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
+..++|+||+|||||++++.+|..++..++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34789999999999999999999999888887643
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00026 Score=60.36 Aligned_cols=31 Identities=26% Similarity=0.088 Sum_probs=27.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
-+.|.|+||||||++++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88888765
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.21 E-value=0.00032 Score=60.91 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=30.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
.++..+.|.||+|||||++++++|..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456678999999999999999999988 554445555444
No 187
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.21 E-value=0.00023 Score=61.23 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.+.|.|+||||||++++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 188
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.19 E-value=0.0012 Score=64.77 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~ 233 (341)
+.+..-+++.|+||+|||++|..+|... +.+++.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5667779999999999999999987643 456655543
No 189
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.18 E-value=0.00026 Score=62.72 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=26.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
-++|.||||||||++++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999999877665
No 190
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0011 Score=65.06 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhh----------h-----hc-----CCchHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTD----------K-----LY-----GESPKLATAIFSLA 255 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~----------~-----~~-----g~~~~~i~~lf~~a 255 (341)
+|.-+++.|++|+|||+++..+|..+ |..+..+++..... . .+ .+....+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999998766 55555544332100 0 11 12233445666677
Q ss_pred HhcCCeEEEEcccchh
Q psy15087 256 EKIQPCIIFIDEIDSL 271 (341)
Q Consensus 256 ~~~~p~II~IDEiD~l 271 (341)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7767899999987543
No 191
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.15 E-value=0.00016 Score=61.52 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=27.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhh
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTL 236 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l 236 (341)
-++|.|+||||||++++.+++.++ .++..++..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999886 23555554443
No 192
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00022 Score=61.74 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.+.|.|++|||||++++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 888777654
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.13 E-value=0.00034 Score=62.76 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.+.-+.|.||+|+||||+++.+++.+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 45679999999999999999999999876554
No 194
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.13 E-value=0.00056 Score=61.33 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=26.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.++++||+|+|||.++.+++...+.+.+.+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999888766665543
No 195
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.13 E-value=0.003 Score=55.33 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=64.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeech---------hhhhhh-----------cCCc------hHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIS---------TLTDKL-----------YGES------PKLATAI 251 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s---------~l~~~~-----------~g~~------~~~i~~l 251 (341)
..|++|+++|.|||++|-++|-+. |..+..+... .+.... .-.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468999999999999999997665 6666555211 122222 0001 1233444
Q ss_pred HHHHHh----cCCeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCCCCcHHHHccCCc
Q psy15087 252 FSLAEK----IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPK 327 (341)
Q Consensus 252 f~~a~~----~~p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~~ld~al~rRf~~ 327 (341)
+..++. ....+|++||+.....-.--. . ..++..+... ..+.-||.|+|.+ ++.|...-|.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----~----~ev~~~l~~R----p~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP----L----EEVISALNAR----PGHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----H----HHHHHHHHTS----CTTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC----H----HHHHHHHHhC----cCCCEEEEECCCC---cHHHHHhCcc
Confidence 444433 356899999997653322111 1 2233333322 2346678888864 5666665554
Q ss_pred eEE
Q psy15087 328 KYH 330 (341)
Q Consensus 328 ~i~ 330 (341)
+-+
T Consensus 174 VTe 176 (196)
T 1g5t_A 174 VSE 176 (196)
T ss_dssp EEE
T ss_pred eee
Confidence 433
No 196
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.12 E-value=0.00054 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.|+|.||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998775
No 197
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.11 E-value=0.0046 Score=61.87 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=42.1
Q ss_pred eEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCC--CCcHHHHccCCceEEecCCCc
Q psy15087 261 CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD--DIDPAIARRMPKKYHIKLPLL 336 (341)
Q Consensus 261 ~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIatTN~~~--~ld~al~rRf~~~i~i~lP~~ 336 (341)
-+|+|||+..+.... .......+..+...- ...++.+|.+|.+|. .++..++.-|..++.+.+.+.
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~g------Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKA------RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHC------GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHh------hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 389999998876421 111222233332221 123588889999987 688889888888888877654
No 198
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.11 E-value=0.0004 Score=59.44 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=26.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.|.|++|||||++++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 98887654
No 199
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.11 E-value=0.00016 Score=69.19 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=27.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.+++|+||||+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888744
No 200
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.09 E-value=0.00041 Score=62.49 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+..+.|.||||||||++++.+|..++.+++..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 355799999999999999999999999877654
No 201
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00034 Score=63.67 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
...+.|.|++|||||++++.+|..++.+|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999999887754
No 202
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.07 E-value=0.00059 Score=65.58 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=44.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CcEEEeech-hh---------hhhhcCCchHHHHHHHHHHHhcCCeEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN----VSFINLDIS-TL---------TDKLYGESPKLATAIFSLAEKIQPCII 263 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~----~~~i~i~~s-~l---------~~~~~g~~~~~i~~lf~~a~~~~p~II 263 (341)
.+...+++.||+|+|||+++++++..+. ..++.+..+ ++ ....+|.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 4556789999999999999999988652 233333211 10 000011111223445556666789999
Q ss_pred EEcccc
Q psy15087 264 FIDEID 269 (341)
Q Consensus 264 ~IDEiD 269 (341)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 203
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.06 E-value=0.00054 Score=59.17 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=26.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc--EEE
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVS--FIN 230 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~--~i~ 230 (341)
+.-|+|.|+||||||++++.++..++.. ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3468999999999999999999998763 544
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00035 Score=60.11 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+..|.|.|++|||||++++.+|.. |.+++..+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 34567899999999999999999998 88877654
No 205
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.05 E-value=0.00044 Score=59.71 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=28.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
.+.|.|++|||||++++.+|..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998888754
No 206
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.03 E-value=0.00062 Score=61.55 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
+...+.|.||+|||||++++.+|..+|..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34568899999999999999999999987664
No 207
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.02 E-value=0.00039 Score=60.59 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
..+.|.|++|||||++++.++..+|++++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34789999999999999999999998887754
No 208
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.01 E-value=0.0004 Score=60.25 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=25.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+.|.||+|||||++++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 88887754
No 209
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.00 E-value=0.00035 Score=66.32 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=30.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
+..++|.||+|||||+|+..||+.++..+++.+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 45689999999999999999999999888886654
No 210
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00018 Score=62.47 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
.+.-|.|.|+||||||++++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999987544
No 211
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.00 E-value=0.0026 Score=54.85 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776643
No 212
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.97 E-value=0.0026 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.8
Q ss_pred CceEEEECCCCCCHHHHHH-HHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAK-ATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAk-alA~~ 223 (341)
.+++++.+|+|+|||..+- .+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3579999999999998643 33343
No 213
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.00054 Score=60.02 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=27.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+.-+.|.|++|||||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 88887765
No 214
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.96 E-value=0.00023 Score=61.88 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.+.-++|.|+||||||++++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999864
No 215
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.001 Score=56.75 Aligned_cols=39 Identities=31% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
.++..++|.|+||+|||++++.++..+ +.++..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345678999999999999999999887 344555554443
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.94 E-value=0.00058 Score=59.42 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.++.-++|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999874
No 217
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.93 E-value=0.0071 Score=52.71 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=35.3
Q ss_pred CcccccccCcHHHHHHHHHHhh-chhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHH-HHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVI-FPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIA-KATAKE 223 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~-~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LA-kalA~~ 223 (341)
..+|+++.-.+.+.+.|...-. .+..... .+.. +...+++++.+|+|+|||..+ -.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP---IIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH---HhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4579998777777777766421 1111111 1111 123467999999999999863 333433
No 218
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.92 E-value=0.00062 Score=59.56 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=28.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEee
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~ 232 (341)
+..+.|.|++|||||++++.++..+|.+++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 346899999999999999999999998887754
No 219
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.90 E-value=0.0011 Score=64.61 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+.-|+|+|+||||||++|+.++..++..++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 456689999999999999999999998766553
No 220
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.89 E-value=0.00072 Score=63.46 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=30.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
+.-+++.||+|||||+||..+|+.++..+++.+.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45688999999999999999999999888887653
No 221
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.89 E-value=0.0023 Score=69.38 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=38.4
Q ss_pred ccccccCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 163 ~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.-..++|.+...++|.+.+... ....+-|.|+|++|+|||+||+.++..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3446899999999998876432 133456889999999999999998765
No 222
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.88 E-value=0.0009 Score=59.61 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=29.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
..+..+.|.|++|||||++++.+|..+|.+++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3455789999999999999999999999887764
No 223
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.88 E-value=0.00048 Score=59.90 Aligned_cols=35 Identities=34% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc-CCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA-NVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i~ 232 (341)
.++.-+.|.|++|||||++++.++..+ ++.++..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 344568899999999999999999987 66666544
No 224
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.85 E-value=0.00078 Score=60.69 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=26.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
.+.-|.|.|++|||||++|+.++..++.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 34568999999999999999999999977
No 225
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.84 E-value=0.00049 Score=63.34 Aligned_cols=31 Identities=35% Similarity=0.379 Sum_probs=25.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc-CCcEEEe
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA-NVSFINL 231 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l-~~~~i~i 231 (341)
.-++|.|+||||||++++.++..+ +..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6555543
No 226
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.82 E-value=0.00068 Score=58.43 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-+.|.||+|||||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678999999999999999999876
No 227
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.81 E-value=0.0009 Score=58.49 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN----VSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~----~~~i~i~~s~l 236 (341)
.++..++|.|+||+|||++++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4556789999999999999999998764 55777765443
No 228
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.80 E-value=0.0045 Score=57.85 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.+..-++|.|+||+|||++|..+|... +.+++.++
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4667789999999999999999998654 34555554
No 229
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.00041 Score=65.63 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=46.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeechh-hh----hh---hcCCchHHHHHHHHHHHhcCCeEEEEccc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDIST-LT----DK---LYGESPKLATAIFSLAEKIQPCIIFIDEI 268 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s~-l~----~~---~~g~~~~~i~~lf~~a~~~~p~II~IDEi 268 (341)
+...+++.||+|+|||+|+++++..... -.+.++... +. .. ++.......+..+..+....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 4557999999999999999999987632 234443321 10 00 12001223455666677789999999997
Q ss_pred ch
Q psy15087 269 DS 270 (341)
Q Consensus 269 D~ 270 (341)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 54
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.77 E-value=0.0026 Score=62.36 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh----------hh-----hc----C-CchHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT----------DK-----LY----G-ESPKLATAIFSLA 255 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~----------~~-----~~----g-~~~~~i~~lf~~a 255 (341)
++.-+++.||+|+|||+++..+|..+ +..+..+++.... .. .+ + ............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999998766 5555544432110 00 01 1 1112233444455
Q ss_pred HhcCCeEEEEcccchh
Q psy15087 256 EKIQPCIIFIDEIDSL 271 (341)
Q Consensus 256 ~~~~p~II~IDEiD~l 271 (341)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557889999988653
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.74 E-value=0.0011 Score=62.40 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=29.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
.-+++.||+|||||+|+..+|..++..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998887776654
No 232
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.73 E-value=0.0044 Score=62.26 Aligned_cols=44 Identities=18% Similarity=0.024 Sum_probs=35.1
Q ss_pred cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 168 AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 168 ~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
+|.+..+++|.+.+... + ....+.|.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~-~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------C-DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------T-TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------c-CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999998877431 0 12356788999999999999999997
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.73 E-value=0.0012 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANV 226 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~ 226 (341)
-+.|.||+|+|||++++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986653
No 234
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.72 E-value=0.00086 Score=61.74 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=26.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
+.-|.|.|++|||||++|+.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 688877665
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.72 E-value=0.028 Score=53.17 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
+.+..-++|.|+||+|||++|..+|... +.++..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4667779999999999999999997764 55555443
No 236
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.71 E-value=0.00094 Score=63.44 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=28.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
.-|+|.||+|||||++|+.+|..++..+++.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999977777654
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.0011 Score=56.53 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
+.-+.|.||+|+|||+|++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998764
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.67 E-value=0.0069 Score=56.21 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeec
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDI 233 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~ 233 (341)
.++..++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 456679999999999999999998655 445554443
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.67 E-value=0.0012 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
++.-+.|.||+|||||+|++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45568899999999999999999875
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.65 E-value=0.0011 Score=57.98 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.++.-+.|.||+|+|||++++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456688999999999999999998874
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.62 E-value=0.0072 Score=58.92 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC---cEEEeech-hhhhh-----hcCC-chHHHHHHHHHHHhcCCeEEEEccc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANV---SFINLDIS-TLTDK-----LYGE-SPKLATAIFSLAEKIQPCIIFIDEI 268 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~---~~i~i~~s-~l~~~-----~~g~-~~~~i~~lf~~a~~~~p~II~IDEi 268 (341)
+...+++.||+|+|||+++++++..++. .++.+.-+ +.... .+.. ..-........+....|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 3445899999999999999999988742 33333211 11000 0000 0111233344455568899999884
No 242
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.60 E-value=0.00099 Score=58.64 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
...+++|.||+|+|||+||..++...+ .++..+.-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 356899999999999999999998876 66655443
No 243
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.58 E-value=0.0059 Score=61.19 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=29.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTL 236 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l 236 (341)
.+.-|+|+|.||+|||++|+.+|..++ .....++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 345689999999999999999999884 44444555444
No 244
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.58 E-value=0.0012 Score=57.33 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--CcEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN--VSFIN 230 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~ 230 (341)
++.-+.|.||+|||||||++.++..++ +.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445688999999999999999999887 55544
No 245
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.55 E-value=0.01 Score=51.82 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=25.5
Q ss_pred CceEEEECCCCCCHH-HHHHHHHHHc--CCcEEEeec
Q psy15087 200 PKGILLYGPPGCGKT-MIAKATAKEA--NVSFINLDI 233 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT-~LAkalA~~l--~~~~i~i~~ 233 (341)
..-.++|||.|+||| .|.+++.+.. +..++.+..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 345789999999999 8889886643 566666653
No 246
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.54 E-value=0.033 Score=48.24 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=35.4
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..+|++++-.+.+.+.|.+.-.. |..... .+.. +.....+++.+|+|+|||..+-..+...
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ---AILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 34688887677777777663211 211111 1111 1123579999999999998766555443
No 247
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.015 Score=51.18 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=32.9
Q ss_pred CcccccccCcHHHHHHHHHHhh-chhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVI-FPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~-~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAk 218 (341)
...|+++.-.+.+.+.|.+.-. .|..... .+.. +...+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~---~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL---ALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEEeCCCCcHHHHHH
Confidence 4578898777777777765321 1111111 1111 1234679999999999998543
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.54 E-value=0.0014 Score=56.96 Aligned_cols=26 Identities=35% Similarity=0.662 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
++..+.|.||+|+|||+|++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678999999999999999998865
No 249
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.53 E-value=0.0016 Score=56.95 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=27.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.-|.|.||+|||||++++.+|..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999985
No 250
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.52 E-value=0.0055 Score=66.19 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=34.9
Q ss_pred cCcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 168 AGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 168 ~G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+|.+..+++|.+.+... ...+-+.++||+|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999988876431 23457899999999999999999863
No 251
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.52 E-value=0.036 Score=55.09 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..+.-++|.||+|+|||++++.||..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 455678999999999999999999876
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.49 E-value=0.0015 Score=56.91 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.++.-+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455688999999999999999998875
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.0018 Score=55.47 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.-+.|.||+|+|||+|++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998763
No 254
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.44 E-value=0.0018 Score=62.90 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=29.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
+.-+++.||+|+|||+|+..+|..++..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999887777644
No 255
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.43 E-value=0.0022 Score=64.15 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=45.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEeechh-hhh---hh--------cCCchHHHHHHHHHHHhcCCeEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN--VSFINLDIST-LTD---KL--------YGESPKLATAIFSLAEKIQPCII 263 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i~~s~-l~~---~~--------~g~~~~~i~~lf~~a~~~~p~II 263 (341)
..+.++++.||+||||||++++++..+. ...+.+.... +.. .+ .+.....+......+....|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 3455799999999999999999998773 2344443321 110 00 01111223445555666789999
Q ss_pred EEcccc
Q psy15087 264 FIDEID 269 (341)
Q Consensus 264 ~IDEiD 269 (341)
+++|+-
T Consensus 338 ivgEir 343 (511)
T 2oap_1 338 IVGEVR 343 (511)
T ss_dssp EESCCC
T ss_pred EeCCcC
Confidence 999973
No 256
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.39 E-value=0.014 Score=49.91 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.0
Q ss_pred CceEEEECCCCCCHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAk 218 (341)
.+++++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4679999999999997554
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.39 E-value=0.0036 Score=54.24 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=28.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
..+.-+.|.||+|||||++++.++..+ +.+++..+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 345568899999999999999999876 556655543
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.38 E-value=0.0072 Score=59.36 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
+.+..-+++.|+||+|||++|..+|... |.++..++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 5667779999999999999999987654 556665543
No 259
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.37 E-value=0.0075 Score=55.98 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=35.2
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..+|+++.-.+.+.+.|.+.-.. |..... .+... .....++++.+|+|+|||..+-..+..
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLF--LNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 34677877667777777654221 111111 11110 122368999999999999986655443
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.36 E-value=0.0024 Score=55.62 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|+|||+|+++++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 556678899999999999999999876
No 261
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.35 E-value=0.0071 Score=59.42 Aligned_cols=90 Identities=22% Similarity=0.376 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhhcCCC-CchHHHHHHHHHHHHHhcCCCCC------CCCCEEEEEEe----CCC
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS-SDHEATAQLKSIFLSKWDGLTTD------KNIDIIIMGAT----NRP 314 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~~~~~~-~~~~~~~~i~~~ll~~ld~~~~~------~~~~viVIatT----N~~ 314 (341)
...+.....+.. .+|+++||||++.....+ ...-..+-+++.|+..+++.... ...++++|||. +.|
T Consensus 239 ~~~~~ai~~ae~--~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 239 ELKQKAIDAVEQ--NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHH--HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHhcc--CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 334444444422 269999999999865432 22223344778899999874221 23468899887 234
Q ss_pred CCCcHHHHccCCceEEecCCCcC
Q psy15087 315 DDIDPAIARRMPKKYHIKLPLLS 337 (341)
Q Consensus 315 ~~ld~al~rRf~~~i~i~lP~~e 337 (341)
.++-|.++.||+.++.++..+.+
T Consensus 317 ~dlipel~~R~~i~i~l~~lt~~ 339 (444)
T 1g41_A 317 SDLIPELQGRLPIRVELTALSAA 339 (444)
T ss_dssp GGSCHHHHTTCCEEEECCCCCHH
T ss_pred hhcchHHhcccceeeeCCCCCHH
Confidence 44558999999987777666554
No 262
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.34 E-value=0.01 Score=62.29 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=36.7
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|+++.-.+...+.+...-..|..... .+... +.....+++.||+|||||+++..++..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34577776666666666655444432221 11110 123457999999999999977776543
No 263
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.34 E-value=0.011 Score=58.57 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=28.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeec
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDI 233 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~ 233 (341)
+.+..-++|.|+||+|||++|..+|... +.++..++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 5667779999999999999999998765 445655543
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.31 E-value=0.0025 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-+.|.||+|+|||+|++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455668999999999999999999876
No 265
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.31 E-value=0.018 Score=59.09 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHhhchhhchhHHhhcCCCCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhhhhhcCCch
Q psy15087 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKLYGESP 245 (341)
Q Consensus 169 G~~~~k~~L~~~v~~pl~~~~~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~~~~~g~~~ 245 (341)
-.+++++.+..++.. ..-.|++||||||||+++-.+...+ +..+..+..+ .
T Consensus 190 LN~~Q~~AV~~al~~----------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T----------N 243 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ----------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS----------N 243 (646)
T ss_dssp CCHHHHHHHHHHHHC----------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS----------H
T ss_pred CCHHHHHHHHHHhcC----------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc----------h
Confidence 356667777665432 1246899999999998655543333 4444444332 3
Q ss_pred HHHHHHHHHHHhcCCeEEEE
Q psy15087 246 KLATAIFSLAEKIQPCIIFI 265 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~I 265 (341)
..+..+..........++-+
T Consensus 244 ~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 244 IAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp HHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHhcCCceEEe
Confidence 34444544444444444433
No 266
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.27 E-value=0.0021 Score=57.77 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=26.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEEe
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFINL 231 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~i 231 (341)
.+-|.||||+|||++|+.+++.++.+.++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999888765
No 267
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.24 E-value=0.0032 Score=53.04 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|+++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455568899999999999999999987
No 268
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.21 E-value=0.0032 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.++-+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 269
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.19 E-value=0.0037 Score=64.04 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL 236 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l 236 (341)
.+..|+|.|+||||||++|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 35568999999999999999999999 999998875443
No 270
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.17 E-value=0.014 Score=52.27 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=31.7
Q ss_pred CcccccccCcHHHHHHHHHHhh-chhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVI-FPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~-~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAk 218 (341)
..+|++++-.+.+.+.|...-. .|..... .+.. +...+.+++.+|+|+|||..+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPL---ALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHH---HhCCCCEEEEcCCCCCchhHhH
Confidence 4568887666666666655321 1111111 1111 1234679999999999998643
No 271
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.15 E-value=0.016 Score=57.90 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKAT 220 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkal 220 (341)
+.+...++|.||+|||||+|++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 356778999999999999999994
No 272
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0058 Score=56.95 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999876
No 273
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.15 E-value=0.011 Score=52.46 Aligned_cols=56 Identities=9% Similarity=-0.035 Sum_probs=31.5
Q ss_pred cCcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHH
Q psy15087 160 INGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 160 ~~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAk 218 (341)
+-.+|+++.-.+.+.+.+.+.-.. |..... .+.. +...+.+++.+|+|+|||..+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV---ALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHH---HHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCcCHHHHHHH
Confidence 356777776666666666543111 111111 1111 1124579999999999998644
No 274
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.10 E-value=0.019 Score=50.71 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=32.6
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAk 218 (341)
..+|+++.-.+.+.+.|...-.. |..... .+.. +...+.+++.+|+|+|||..+-
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~---i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP---CIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCcHHHHHH
Confidence 46799987666777777553211 111111 1111 1224679999999999997643
No 275
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.10 E-value=0.036 Score=48.65 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=31.7
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIA 217 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LA 217 (341)
...|+++.-.+.+.+.|.+.-.. |..... .+.. +...+++++.+|+|+|||..+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL---GRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCcHHHHH
Confidence 45788886667777777653211 111111 1111 123467999999999999863
No 276
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.10 E-value=0.021 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
...-+.|.||.|+|||++.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999874
No 277
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.09 E-value=0.0041 Score=55.42 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--CcEEEe
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN--VSFINL 231 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~--~~~i~i 231 (341)
.+.-+.|.||||+|||++++.+++.++ ..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 445688999999999999999999986 455443
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.08 E-value=0.004 Score=55.22 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.++.-+.|.||+|+|||+|+++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556788999999999999999998764
No 279
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.08 E-value=0.013 Score=55.20 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999876
No 280
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.06 E-value=0.021 Score=53.53 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
.++..+++.||+|+|||+++..+|..+ +..+..++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456678999999999999999998765 44544443
No 281
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.05 E-value=0.1 Score=48.82 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=33.3
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
...|+++.-.+.+.+.|.+.-.. |..... .+.. +....++++.+|+|+|||..+-..+.
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ---AILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHH---HTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 34677876666777777653211 111111 1111 12346799999999999987654443
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.04 E-value=0.0014 Score=56.86 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
-+.|.|++|||||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999885
No 283
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.03 E-value=0.037 Score=55.24 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=48.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh----hhhh--hcC----------------------Cch
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST----LTDK--LYG----------------------ESP 245 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~----l~~~--~~g----------------------~~~ 245 (341)
+.+...++|.||+|+|||+|++.++... |.+.+.+...+ +... .+| ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4566779999999999999999998754 33444433211 1100 000 112
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhh
Q psy15087 246 KLATAIFSLAEKIQPCIIFIDEIDSLL 272 (341)
Q Consensus 246 ~~i~~lf~~a~~~~p~II~IDEiD~l~ 272 (341)
...+.+...+....|.+|+||=+..+.
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 344556666777889999999666653
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.03 E-value=0.0043 Score=58.02 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=26.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCcE
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSF 228 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~~ 228 (341)
+.+...+.|+||+|+|||+|++.|+..+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 46677799999999999999999998874343
No 285
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.99 E-value=0.025 Score=52.94 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=33.6
Q ss_pred CcccccccCcHHHHHHHHHHhh-chhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVI-FPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKAT 220 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~-~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkal 220 (341)
..+|++++-.+.+.+.|...-. .|..... .+...- ...+.++++.+|+|+|||..+-..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHH
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHH
Confidence 3567777666677776665311 1111111 111110 123478999999999999865544
No 286
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.99 E-value=0.0043 Score=55.28 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=27.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
.-|.+.|++|||||++++.+|..+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999999866
No 287
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.98 E-value=0.0045 Score=55.36 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344558899999999999999999988754
No 288
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.96 E-value=0.015 Score=58.99 Aligned_cols=39 Identities=31% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC----CcEEEeechhhh
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN----VSFINLDISTLT 237 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~----~~~i~i~~s~l~ 237 (341)
.+..|+|.|+||||||++|++++..++ .+++.++...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 345689999999999999999999986 778887765543
No 289
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.95 E-value=0.021 Score=49.90 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.0
Q ss_pred CceEEEECCCCCCHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAk 218 (341)
.+.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999998543
No 290
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.93 E-value=0.018 Score=55.05 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=16.8
Q ss_pred CceEEEECCCCCCHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKAT 220 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkal 220 (341)
.+++++.+|+|+|||..+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 457999999999999954444
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.93 E-value=0.03 Score=51.86 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=43.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhh-----------hhh----hc-C----CchHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTL-----------TDK----LY-G----ESPKLATAIFSLAE 256 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l-----------~~~----~~-g----~~~~~i~~lf~~a~ 256 (341)
+..+++.|++|+|||+++..+|..+ +..+..+++... ... .+ + .....+......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998766 555554443211 000 00 1 11223345555555
Q ss_pred hcCCeEEEEcccch
Q psy15087 257 KIQPCIIFIDEIDS 270 (341)
Q Consensus 257 ~~~p~II~IDEiD~ 270 (341)
.....+|+||=...
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45678999998544
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.90 E-value=0.0086 Score=55.42 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
..+.-|.+.||+|||||++++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456688999999999999999998875
No 293
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.90 E-value=0.023 Score=49.39 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=29.9
Q ss_pred cccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHH
Q psy15087 162 GSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKA 219 (341)
Q Consensus 162 ~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAka 219 (341)
.+|+++.-.+.+.+.|.+.-.. |..... .+.. +...+.+++.+|+|+|||..+-.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPG---ALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHHTCCEEEECCSSHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCChHHHHHHH
Confidence 4577776556666666543111 111111 1110 11235799999999999986433
No 294
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.88 E-value=0.021 Score=56.24 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.+..|+|.|.||+|||++++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455799999999999999999999874
No 295
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.88 E-value=0.0079 Score=57.46 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-++|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456678999999999999999999876
No 296
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.86 E-value=0.011 Score=55.67 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
.|.-+.|.||+|||||++++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445688999999999999999998875
No 297
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.83 E-value=0.023 Score=52.55 Aligned_cols=72 Identities=25% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechh--------h---hhh----hc----CCch-HHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDIST--------L---TDK----LY----GESP-KLATAIFSLA 255 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~--------l---~~~----~~----g~~~-~~i~~lf~~a 255 (341)
++..+.+.|++|+|||+++..+|..+ +..+..+++.. + ... .+ +... ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999998765 44444433211 0 000 01 1111 2234455556
Q ss_pred HhcCCeEEEEcccch
Q psy15087 256 EKIQPCIIFIDEIDS 270 (341)
Q Consensus 256 ~~~~p~II~IDEiD~ 270 (341)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 556789999999733
No 298
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.83 E-value=0.0049 Score=56.57 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+..-++|.||||+|||+|++.+|..+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4666779999999999999999998765
No 299
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.82 E-value=0.0087 Score=52.01 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=40.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeechhhh-------hhhcCCc-----hHHHHHHHHHHHhcCCeEEE
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLT-------DKLYGES-----PKLATAIFSLAEKIQPCIIF 264 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~s~l~-------~~~~g~~-----~~~i~~lf~~a~~~~p~II~ 264 (341)
..-.+++||+|+|||+.+-.++..+ +..+..+....-. ....|.. .....+++..+.. ...+|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 3457889999999999888887765 5555444311100 0011110 0001234443322 357999
Q ss_pred Ecccchh
Q psy15087 265 IDEIDSL 271 (341)
Q Consensus 265 IDEiD~l 271 (341)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999886
No 300
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.80 E-value=0.017 Score=57.65 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
..+..|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999998765 555555554
No 301
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.73 E-value=0.041 Score=58.84 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~ 222 (341)
.-++|.||.|+|||++++.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999953
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.73 E-value=0.0031 Score=55.75 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=17.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHH-HHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATA-KEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA-~~l 224 (341)
.++.-+.|.||+|+|||++++.++ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 765
No 303
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.72 E-value=0.0069 Score=56.33 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
..+.-+.|.||+|+|||+|++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445688999999999999999999775
No 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.72 E-value=0.0034 Score=58.07 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=19.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
+.-|.|.||+|||||++|+.++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999876
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.71 E-value=0.006 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 306
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.71 E-value=0.0056 Score=52.82 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEeechh
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s~ 235 (341)
+|++|++|||||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77877776543
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.69 E-value=0.0068 Score=56.73 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445568899999999999999999876
No 308
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.69 E-value=0.1 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
...++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3458999999999999999887654
No 309
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.67 E-value=0.0076 Score=51.82 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
...+|||.|++|+|||++|.++... |..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 4578999999999999999999874 44443
No 310
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.014 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.....|++.|++|+|||+|+.++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 311
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.66 E-value=0.032 Score=49.23 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.3
Q ss_pred CceEEEECCCCCCHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIA 217 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LA 217 (341)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 356999999999999864
No 312
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.64 E-value=0.027 Score=55.06 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=45.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----CCcEEEeechhhhh----------h-----hcC-----CchHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA----NVSFINLDISTLTD----------K-----LYG-----ESPKLATAIFS 253 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~s~l~~----------~-----~~g-----~~~~~i~~lf~ 253 (341)
.+++.+++.|++|+|||+++-.+|..+ |..+.-+++..... . .+. .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356788999999999999999998655 55665555442110 0 001 11223345555
Q ss_pred HHHhcCCeEEEEcccch
Q psy15087 254 LAEKIQPCIIFIDEIDS 270 (341)
Q Consensus 254 ~a~~~~p~II~IDEiD~ 270 (341)
.+......+++||=...
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 55545668999987543
No 313
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.59 E-value=0.0078 Score=56.12 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
++.-+.|.||+|||||++++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 314
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.55 E-value=0.06 Score=52.50 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=26.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
++..+++.||+|+|||+++..+|..+ +..+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 56678899999999999999998876 44444443
No 315
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.52 E-value=0.084 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.735 Sum_probs=18.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.++++.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57999999999999886666544
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.48 E-value=0.0065 Score=54.39 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|||||||++.++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 556678999999999999999998755
No 317
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.48 E-value=0.01 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
+.-+.|.|++|+|||++++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999983
No 318
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.46 E-value=0.014 Score=56.90 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=27.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEeech
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~s 234 (341)
..++++||+|+|||..+-.++...+.+.+.+-..
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888887766665443
No 319
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.077 Score=54.72 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=34.1
Q ss_pred CcccccccCcHHHHHHHHHH-hhchhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQS-VIFPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKAT 220 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~-v~~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkal 220 (341)
+.+|++++-.+.+++.+... +..+..... .+. .. +....++++.||+|+|||+.+-..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~-~~-~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVK-KG-LLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHH-TT-TTTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHH-HH-hcCCCcEEEEcCCCCcHHHHHHHH
Confidence 45788876566666655542 111111111 121 11 244678999999999999987443
No 320
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.42 E-value=0.0042 Score=56.09 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc-CCcEE
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA-NVSFI 229 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l-~~~~i 229 (341)
..+.-|.|.|++|+|||++++.++..+ +..++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 345668999999999999999999998 44443
No 321
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.40 E-value=0.0072 Score=54.18 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556678999999999999999998765
No 322
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.38 E-value=0.038 Score=52.12 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=32.7
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA 221 (341)
..+|+++.-.+.+.+.|...-.. |..... .+.. +...+++++.+|+|+|||..+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPV---AITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45688887666777777653211 111111 1111 1123569999999999998654443
No 323
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.36 E-value=0.08 Score=48.77 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=33.1
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIA 217 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LA 217 (341)
..+|+++.-.+.+.+.|...-.. |..... .+... +..+++++++++|+|||||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i-l~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-TSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-HcCCCCeEEEECCCCCCccHHH
Confidence 45788887777777777653111 111111 11111 1123578999999999999764
No 324
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.32 E-value=0.088 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..-++|.||.|+|||++.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999764
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.30 E-value=0.012 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988775
No 326
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.28 E-value=0.051 Score=51.37 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=32.2
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKAT 220 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkal 220 (341)
..+|+++.-.+.+.+.|...-.. |..... .+.. +...+.+++.+|+|+|||..+-..
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~---~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP---CIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEECCCSCSSSHHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH---HhCCCCEEEECCCCCcccHHHHHH
Confidence 35677776666677766553111 111111 1111 122456999999999999874433
No 327
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.25 E-value=0.0064 Score=54.00 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999998765
No 328
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.23 E-value=0.0088 Score=54.45 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||+++++...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455668899999999999999998765
No 329
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.21 E-value=0.01 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+ .-+.|.||.|+|||||++.++...
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 55 678899999999999999999865
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.19 E-value=0.014 Score=49.82 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.-+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998875
No 331
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.14 E-value=0.009 Score=53.64 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678999999999999999998754
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.12 E-value=0.036 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
....|.|.|+||+|||+++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998775
No 333
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.12 E-value=0.012 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=23.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+.+..-+.|.||.|+|||+|++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355667899999999999999999985
No 334
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.12 E-value=0.11 Score=49.07 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=34.4
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LAkalA 221 (341)
..+|+++.-.+.+.+.|...-.. |..... .+.. +...+++++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~---i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ---IIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCCchHHHHHHH
Confidence 45788887667777777654221 211111 1111 1224579999999999997665443
No 335
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.10 E-value=0.012 Score=51.82 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..-+.|.||.|+|||+|++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999875
No 336
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.08 E-value=0.01 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||+|+++||...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455568899999999999999999865
No 337
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.08 E-value=0.057 Score=54.37 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=29.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcC---CcEEEeechhhh
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEAN---VSFINLDISTLT 237 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~---~~~i~i~~s~l~ 237 (341)
+..++|.|++|+|||++++.++..++ .++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 45689999999999999999998774 456666655443
No 338
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.07 E-value=0.01 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 556679999999999999999998764
No 339
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.05 E-value=0.016 Score=51.19 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=27.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEEeec
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~~~~i~i~~ 233 (341)
-.|-|.|..|||||++++.++. +|++++..+.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4588999999999999999998 8998877553
No 340
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.03 E-value=0.011 Score=53.97 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||++.++..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456678899999999999999998765
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.02 E-value=0.011 Score=54.17 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556678999999999999999998765
No 342
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.02 E-value=0.013 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 343
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.02 E-value=0.087 Score=54.42 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.4
Q ss_pred CCceEEEECCCCCCHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAk 218 (341)
...++++.||+|+|||..+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 46789999999999998773
No 344
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.01 E-value=0.0092 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999998765
No 345
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.00 E-value=0.0092 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999998765
No 346
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.00 E-value=0.0084 Score=60.53 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=30.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CcEEEeechhh
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEAN----VSFINLDISTL 236 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~----~~~i~i~~s~l 236 (341)
..+..+.|.|++|||||+|+++||..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4456789999999999999999999884 34545665554
No 347
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.99 E-value=0.023 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 348
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.98 E-value=0.015 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..-+.|.||+|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999998764
No 349
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.98 E-value=0.011 Score=53.25 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.+..-+.|.||.|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566889999999999999999985
No 350
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.98 E-value=0.0098 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455678999999999999999998865
No 351
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.97 E-value=0.025 Score=49.81 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCcEEEe
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA---NVSFINL 231 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i 231 (341)
+.-+.|.|++|+|||++++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457889999999999999999887 4555544
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.96 E-value=0.013 Score=55.94 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||||++.+|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 455568899999999999999999865
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.96 E-value=0.013 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||+|++.+|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 445568899999999999999999865
No 354
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.96 E-value=0.022 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=19.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+.-+.|.||+|+|||++++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34558899999999999999999887
No 355
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.96 E-value=0.12 Score=50.22 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=32.1
Q ss_pred CcccccccCcHHHHHHHHHHhhc-hhhch-hHHhhcCCCCCCceEEEECCCCCCHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIF-PMKNR-NLLKESGLLKPPKGILLYGPPGCGKTMIA 217 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~-pl~~~-~~~~~~g~~~~~~gvLL~GPpGtGKT~LA 217 (341)
..+|.++.-.+.+.+.|...-.. |.... ..+...- ...+..+|+.||+|+|||..+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il-~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCcEEEEcCCCCchhHHH
Confidence 34788887677777777552111 10000 1111110 123578999999999999874
No 356
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.96 E-value=0.013 Score=56.33 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||+|+++||...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 455568899999999999999999865
No 357
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.94 E-value=0.0099 Score=53.62 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999998765
No 358
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.93 E-value=0.01 Score=54.56 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||+++++..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455668999999999999999998765
No 359
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.93 E-value=0.013 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 360
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.92 E-value=0.012 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||++.++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678999999999999999998765
No 361
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.92 E-value=0.01 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||++.++...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999998765
No 362
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.90 E-value=0.014 Score=55.99 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||||++.+|...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455668899999999999999999765
No 363
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.90 E-value=0.013 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+.|.||+|+|||+|++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 364
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.89 E-value=0.012 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456678899999999999999998755
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.89 E-value=0.019 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
....|+|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998764
No 366
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.88 E-value=0.013 Score=58.55 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=25.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANV 226 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~ 226 (341)
.+..+.|.|.+|||||++++++|+.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999985
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.86 E-value=0.011 Score=54.05 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||+++++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455678899999999999999998755
No 368
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.85 E-value=0.014 Score=55.37 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
..-+.|.||+|||||+|++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987644
No 369
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.83 E-value=0.013 Score=55.98 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||||++.||...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999765
No 370
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.83 E-value=0.011 Score=53.40 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455668899999999999999998765
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.83 E-value=0.02 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
...+++.|++|+|||+|+..++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998875
No 372
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.78 E-value=0.018 Score=46.67 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.+++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 373
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.77 E-value=0.032 Score=49.38 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSF 228 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~ 228 (341)
.+.-+.|.|++|+|||++++.+++.++.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 345688999999999999999999998643
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.76 E-value=0.013 Score=55.89 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=45.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC--cEEEeech-hhhhh-------hcC-C-------chHHHHHHHHHHHhcC
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANV--SFINLDIS-TLTDK-------LYG-E-------SPKLATAIFSLAEKIQ 259 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~--~~i~i~~s-~l~~~-------~~g-~-------~~~~i~~lf~~a~~~~ 259 (341)
.+...++|.||+|+|||+|+++++..... -.+.+... ++... ++. . ....++.....+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 45567999999999999999999987642 23333321 11100 111 0 1112445556666678
Q ss_pred CeEEEEcccch
Q psy15087 260 PCIIFIDEIDS 270 (341)
Q Consensus 260 p~II~IDEiD~ 270 (341)
|..++++|+..
T Consensus 253 pd~~l~~e~r~ 263 (361)
T 2gza_A 253 PTRILLAELRG 263 (361)
T ss_dssp CSEEEESCCCS
T ss_pred CCEEEEcCchH
Confidence 89999999743
No 375
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.75 E-value=0.12 Score=49.12 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc----CCcEEEeec
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA----NVSFINLDI 233 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l----~~~~i~i~~ 233 (341)
++++.+|+|+|||..+-+++... +...+.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999888876554 445555443
No 376
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.71 E-value=0.014 Score=55.99 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||||++.||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 445568899999999999999999865
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.71 E-value=0.012 Score=56.03 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||||++.+|...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455668899999999999999999765
No 378
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.71 E-value=0.012 Score=54.03 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||||++.++..+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455668899999999999999998765
No 379
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.67 E-value=0.013 Score=53.11 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.++.-+.|.||.|+|||+|++.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999998765
No 380
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.66 E-value=0.019 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.66 E-value=0.019 Score=56.13 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEeec
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDI 233 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~~ 233 (341)
.+..++++|+||+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45679999999999999999998876 344554443
No 382
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.66 E-value=0.029 Score=62.25 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
+.+...+.++||+|||||+|++.+.....
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 35566799999999999999999988763
No 383
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.62 E-value=0.021 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.61 E-value=0.016 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~ 222 (341)
-|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 385
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.60 E-value=0.23 Score=46.85 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=31.4
Q ss_pred CcccccccCcHHHHHHHHHHhh-chhhchh-HHhhcCCCCCCceEEEECCCCCCHHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVI-FPMKNRN-LLKESGLLKPPKGILLYGPPGCGKTMIA 217 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~-~pl~~~~-~~~~~g~~~~~~gvLL~GPpGtGKT~LA 217 (341)
-.+|+++.-.+.+.+.|...-. .|..... .+.. +...+.+++.+|+|+|||..+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~---i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPI---IKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HccCCCEEEEcCCCCHHHHHH
Confidence 3468888666667777655321 1111111 1111 123467999999999999743
No 386
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.58 E-value=0.02 Score=56.15 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=43.4
Q ss_pred CeEEEEcccchhhhcCCCCchHHHHHHHHHHHHHhcCCCCCCCCCEEEEEE---------eC---CCCCCcHHHHccCCc
Q psy15087 260 PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA---------TN---RPDDIDPAIARRMPK 327 (341)
Q Consensus 260 p~II~IDEiD~l~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~~~viVIat---------TN---~~~~ld~al~rRf~~ 327 (341)
|.|+||||+|.+. ....+.|+..++.. ..+++|+++ ++ .++.+++.+++||..
T Consensus 296 ~~VliIDEa~~l~-----------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-----------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp ECEEEEESGGGCB-----------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred ceEEEEechhhcC-----------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 3699999999983 23456677776632 334555555 32 167899999999977
Q ss_pred eEEecCCCcCC
Q psy15087 328 KYHIKLPLLSS 338 (341)
Q Consensus 328 ~i~i~lP~~e~ 338 (341)
+.++.|+.++
T Consensus 361 -~~~~~~~~~e 370 (456)
T 2c9o_A 361 -IRTMLYTPQE 370 (456)
T ss_dssp -EECCCCCHHH
T ss_pred -eeCCCCCHHH
Confidence 6888777654
No 387
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.56 E-value=0.11 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=20.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..++|+++|+|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 4578999999999999987776654
No 388
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.54 E-value=0.02 Score=47.28 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~ 223 (341)
-+.|.|++|+|||+|.++++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999763
No 389
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.53 E-value=0.029 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
.....|++.|++|+|||+|+.++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556799999999999999999975
No 390
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.51 E-value=0.017 Score=55.71 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+..-+.|.||+|||||+|+++|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3556679999999999999999999743
No 391
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.011 Score=50.40 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
..+.|.||+|||||+|++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998763
No 392
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.50 E-value=0.032 Score=54.28 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=15.8
Q ss_pred CceEEEECCCCCCHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIA 217 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LA 217 (341)
.+.+|+.||+|+|||..+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 357999999999999975
No 393
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.50 E-value=0.025 Score=50.07 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
.+++||.|+|||+.+-.++... +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888887655 55555544
No 394
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.48 E-value=0.021 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 395
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.023 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997643
No 396
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.47 E-value=0.015 Score=57.16 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=19.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.+-.++.|+||||||+++..++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 445789999999999999888753
No 397
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.46 E-value=0.02 Score=46.22 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.|++.|++|+|||+|+.++....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 398
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.45 E-value=0.3 Score=51.26 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
.+.++|+.||+|+|||..+-..+-.. +...+.+.
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvla 424 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV 424 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45689999999999999776554332 54444443
No 399
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.45 E-value=0.022 Score=58.17 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877775543
No 400
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.44 E-value=0.022 Score=46.78 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999643
No 401
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.43 E-value=0.028 Score=45.94 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.....|++.|++|+|||+|+.++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999763
No 402
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.42 E-value=0.024 Score=46.22 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 403
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.42 E-value=0.074 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...+.|.||.|+|||++++.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346889999999999999999764
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.39 E-value=0.099 Score=49.14 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.....+.+.|+||+|||+++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445668899999999999999998764
No 405
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.38 E-value=0.025 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 406
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.38 E-value=0.012 Score=56.03 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||+|||||||++.+|...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455668899999999999999999865
No 407
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.38 E-value=0.095 Score=46.43 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.3
Q ss_pred ceEEEECCCCCCHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAK 218 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAk 218 (341)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 408
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.36 E-value=0.047 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
...+++.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998875
No 409
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.33 E-value=0.026 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999865
No 410
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.30 E-value=0.047 Score=49.12 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.9
Q ss_pred ceEEEECCCCCCHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKA 219 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAka 219 (341)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999986543
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.30 E-value=0.027 Score=46.55 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
....|++.|++|+|||+|+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999764
No 412
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.28 E-value=0.027 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.-+.|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 413
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.27 E-value=0.048 Score=49.24 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999764
No 414
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.24 E-value=0.019 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|+|||+|++.++...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456678999999999999999998765
No 415
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.22 E-value=0.028 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 416
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.22 E-value=0.032 Score=49.67 Aligned_cols=28 Identities=25% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANV 226 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~ 226 (341)
.+.-+.|.|++|+|||++++.+++.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445788899999999999999987644
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.22 E-value=0.021 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..-+.|.||.|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568899999999999999998765
No 418
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.21 E-value=0.025 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999754
No 419
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.19 E-value=0.029 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 420
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.027 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999763
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.19 E-value=0.027 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~ 222 (341)
.|++.|++|+|||+|+.++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 422
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.17 E-value=0.026 Score=47.15 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|+|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 423
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.17 E-value=0.031 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.|++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 424
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.13 E-value=0.033 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
....-+.|.||||+|||+|+++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445568899999999999999998765
No 425
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.12 E-value=0.029 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 426
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.07 E-value=0.05 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
...++++.||+|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997654
No 427
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.028 Score=55.37 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+.|.||.|||||+|++.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 455679999999999999999998764
No 428
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.05 E-value=0.063 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~ 222 (341)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999975
No 429
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.05 E-value=0.029 Score=47.57 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+...|++.|++|+|||+|++++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999873
No 430
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.02 E-value=0.03 Score=53.62 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+..-+-|.||+|+|||||+++++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455668899999999999999998765
No 431
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.01 E-value=0.025 Score=46.12 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~ 222 (341)
.|++.|++|+|||+|++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999853
No 432
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.00 E-value=0.033 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999743
No 433
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.99 E-value=0.18 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=18.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~ 222 (341)
.++++.+|+|+|||..+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999997776654
No 434
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.99 E-value=0.2 Score=54.54 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.0
Q ss_pred CceEEEECCCCCCHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKAT 220 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkal 220 (341)
.+.+++++|+|+|||..+-..
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHH
Confidence 457999999999999955444
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.98 E-value=0.018 Score=53.82 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+..-+.|.||+|+|||+|++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3566779999999999999999998765
No 436
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.97 E-value=0.28 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=18.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.++++.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999887666543
No 437
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.96 E-value=0.034 Score=46.28 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|+.++....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 438
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.95 E-value=0.034 Score=45.75 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|++++....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 439
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.91 E-value=0.039 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 440
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.90 E-value=0.034 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 441
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.90 E-value=0.03 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..-|.|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999864
No 442
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.90 E-value=0.03 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 443
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.90 E-value=0.33 Score=47.93 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.8
Q ss_pred CceEEEECCCCCCHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKA 219 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAka 219 (341)
...+++.+|+|+|||..+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 47899999999999987443
No 444
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.89 E-value=0.034 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|+.+++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 445
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.88 E-value=0.031 Score=56.94 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999888775543
No 446
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.88 E-value=0.036 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.87 E-value=0.035 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346999999999999999999864
No 448
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.87 E-value=0.019 Score=49.22 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.+...+.|.|++|+|||+|+++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44556999999999999999998643
No 449
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.86 E-value=0.032 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
...|++.|++|+|||+|+.++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999964
No 450
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.81 E-value=0.033 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 451
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.81 E-value=0.09 Score=47.76 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 452
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.81 E-value=0.032 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 453
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.79 E-value=0.19 Score=48.61 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=31.3
Q ss_pred CcccccccCcHHHHHHHHHHhhchhhchhHHhh--cCCCCCCceEEEECCCCCCHHHH
Q psy15087 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKE--SGLLKPPKGILLYGPPGCGKTMI 216 (341)
Q Consensus 161 ~~~~~dI~G~~~~k~~L~~~v~~pl~~~~~~~~--~g~~~~~~gvLL~GPpGtGKT~L 216 (341)
-.+|+++.-.+.+.+.|...- ...|..... ...+...+.+++.+|+|+|||..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSG---YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 457888766666777665531 111111111 00012346899999999999984
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.78 E-value=0.035 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.++.-+.|.||.|+|||++++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 33445889999999999999999887
No 455
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.74 E-value=0.039 Score=47.14 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
....|++.|++|+|||+|++++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999999964
No 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.73 E-value=0.056 Score=52.91 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
+....-+.|.||+|||||+|++.|+......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3455668999999999999999999988543
No 457
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.72 E-value=0.06 Score=59.73 Aligned_cols=28 Identities=29% Similarity=0.646 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 197 LKPPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 197 ~~~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
+.+...|-|+||+|||||+|++++..-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3566679999999999999999998755
No 458
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.70 E-value=0.041 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.-+.|.|++|+|||++++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999877
No 459
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.70 E-value=0.034 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|++++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 460
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.04 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456999999999999999999764
No 461
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.68 E-value=0.04 Score=45.81 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999865
No 462
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.68 E-value=0.037 Score=46.28 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 459999999999999999887654
No 463
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.67 E-value=0.37 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred CceEEEECCCCCCHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATA 221 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA 221 (341)
+..++|.||.|+|||+++|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999994
No 464
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.66 E-value=0.04 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999754
No 465
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.64 E-value=0.045 Score=51.24 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFI 229 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i 229 (341)
...+++|.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3578999999999999999999875 44443
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.62 E-value=0.043 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
....|++.|++|+|||+|+.++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999754
No 467
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.61 E-value=0.077 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+.+|+.+|+|+|||..+..-+-..
T Consensus 40 g~d~lv~apTGsGKTl~~~lp~l~~ 64 (523)
T 1oyw_A 40 GRDCLVVMPTGGGKSLCYQIPALLL 64 (523)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHh
Confidence 3579999999999998655444333
No 468
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.60 E-value=0.042 Score=46.18 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|+.++...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999997643
No 469
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.57 E-value=0.052 Score=44.88 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999764
No 470
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.57 E-value=0.04 Score=46.28 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
....|++.|++|+|||+|+.++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999753
No 471
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.54 E-value=0.052 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-.+|+||.|+|||++..|+.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998655
No 472
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.53 E-value=0.11 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.|.|.|+||+|||+|.++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999754
No 473
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.12 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAK 222 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~ 222 (341)
...+|++||+|+|||..+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 46799999999999987655443
No 474
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.52 E-value=0.044 Score=46.22 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
-.|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999888764
No 475
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.049 Score=46.07 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
....|++.|++|+|||+|+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999865
No 476
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.49 E-value=0.12 Score=46.21 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=21.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc---CCcEEEee
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA---NVSFINLD 232 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l---~~~~i~i~ 232 (341)
.-.+++||.|+|||+.+-..+... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 346789999999997666665443 44444443
No 477
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.48 E-value=0.046 Score=46.13 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999999764
No 478
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.48 E-value=0.045 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
..|++.|++|+|||+|+.++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 479
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.45 E-value=0.043 Score=57.80 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHc
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l 224 (341)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999877775543
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.44 E-value=0.046 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999764
No 481
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.42 E-value=0.036 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy15087 202 GILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~ 223 (341)
.|++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999764
No 482
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.39 E-value=0.044 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCCce--EEEECCCCCCHHHHHHHHHHH
Q psy15087 198 KPPKG--ILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 198 ~~~~g--vLL~GPpGtGKT~LAkalA~~ 223 (341)
.++.. +.|.||+|+|||+|+++++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44445 899999999999999999865
No 483
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.38 E-value=0.035 Score=45.96 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 484
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.048 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999765
No 485
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.36 E-value=0.049 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+.++...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999754
No 486
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.045 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
-.|++.|++|+|||+|+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 487
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.34 E-value=0.049 Score=46.22 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
....|++.|++|+|||+|+.++....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34569999999999999999997653
No 488
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.32 E-value=0.049 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
...|++.|++|+|||+|+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999864
No 489
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.31 E-value=0.035 Score=49.95 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=25.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 202 GILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 202 gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
-+.|+|++|||||++++.++..+|++.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~ 31 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQ 31 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 36799999999999999999988877644
No 490
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.29 E-value=0.05 Score=45.42 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
....|++.|++|+|||+|+.++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999753
No 491
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.28 E-value=0.075 Score=50.32 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCc
Q psy15087 198 KPPKGILLYGPPGCGKTMIAKATAKEANVS 227 (341)
Q Consensus 198 ~~~~gvLL~GPpGtGKT~LAkalA~~l~~~ 227 (341)
....-+.|.||+|+|||+|++.++......
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 445568999999999999999999988644
No 492
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.045 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 493
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.27 E-value=0.051 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999764
No 494
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.26 E-value=0.051 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEA 224 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l 224 (341)
...|++.|++|+|||+|+.++....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998753
No 495
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.26 E-value=0.05 Score=50.87 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCcEEE
Q psy15087 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230 (341)
Q Consensus 199 ~~~gvLL~GPpGtGKT~LAkalA~~l~~~~i~ 230 (341)
...||||.|++|+|||++|.++.. .|..++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 467899999999999999988865 4555544
No 496
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.20 E-value=0.046 Score=45.30 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+.++...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 497
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.19 E-value=0.049 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q psy15087 201 KGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 201 ~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
..|++.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 498
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.19 E-value=0.054 Score=52.66 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKE 223 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~ 223 (341)
+..+.|.||+|+|||+|.++++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 346889999999999999999873
No 499
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.18 E-value=0.054 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Q psy15087 200 PKGILLYGPPGCGKTMIAKATAKEAN 225 (341)
Q Consensus 200 ~~gvLL~GPpGtGKT~LAkalA~~l~ 225 (341)
...+.|.||+|+|||+|+++++....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34689999999999999999987554
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.18 E-value=0.087 Score=45.97 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHc--CCcEEEe
Q psy15087 203 ILLYGPPGCGKTMIAKATAKEA--NVSFINL 231 (341)
Q Consensus 203 vLL~GPpGtGKT~LAkalA~~l--~~~~i~i 231 (341)
+.|-|+.||||||.++.+++.+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6788999999999999999988 4555543
Done!