RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15087
(341 letters)
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 274 bits (703), Expect = 1e-91
Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 3/187 (1%)
Query: 149 KIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGP 208
++ + IV W +IAG + K+ L + VI P L +GL P KG+LL+GP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGP 62
Query: 209 PGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEI 268
PG GKT++A+A A E + +F+N+ ++LT K G+ KL A+F++A +QP IIFIDE+
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 269 DSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNID-IIIMGATNRPDDIDPAIARRMPK 327
DSLL RSSS+HEA+ +LK+ FL ++DGL + + D I+++ ATNRP ++D A RR K
Sbjct: 123 DSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK 182
Query: 328 KYHIKLP 334
+ ++ LP
Sbjct: 183 RVYVSLP 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 275 bits (706), Expect = 8e-91
Identities = 81/202 (40%), Positives = 127/202 (62%), Gaps = 2/202 (0%)
Query: 133 KKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLK 192
KK L ++++ + N IV + +IAG + K+ L + VI P L
Sbjct: 83 KKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF- 141
Query: 193 ESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIF 252
+GL P +G+LL+GPPG GKTM+AKA A E+N +F N+ ++LT K GE KL A+F
Sbjct: 142 -TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALF 200
Query: 253 SLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312
++A ++QP IIFID++DSLL R +H+A+ +LK+ FL ++DG+ + + +++MGATN
Sbjct: 201 AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260
Query: 313 RPDDIDPAIARRMPKKYHIKLP 334
RP ++D A+ RR K+ ++ LP
Sbjct: 261 RPQELDEAVLRRFIKRVYVSLP 282
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 266 bits (681), Expect = 2e-87
Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 2/197 (1%)
Query: 138 DVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLL 197
+ L +++ N I+ +W++IAG+E K + + V++PM ++ GL
Sbjct: 57 ERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT--GLR 114
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEK 257
PPKGILL+GPPG GKT+I K A ++ +F ++ S+LT K GE K+ A+F++A
Sbjct: 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARC 174
Query: 258 IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317
QP +IFIDEIDSLL R +HE++ ++K+ FL + DG TT I+++GATNRP +I
Sbjct: 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234
Query: 318 DPAIARRMPKKYHIKLP 334
D A RR+ K+ +I LP
Sbjct: 235 DEAARRRLVKRLYIPLP 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 245 bits (627), Expect = 8e-80
Identities = 84/181 (46%), Positives = 114/181 (62%), Gaps = 4/181 (2%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
IV E N W ++AGLE K+ L ++VI P+K +L G P +GILL+GPPG GK+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKS 59
Query: 215 MIAKATAKEANVS-FINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273
+AKA A EAN S F ++ S L K GES KL +F LA + +P IIFIDEIDSL
Sbjct: 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119
Query: 274 SRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKL 333
SRS ++ EA ++K+ FL + G+ D + I+++GATN P +D AI RR K+ +I L
Sbjct: 120 SRSENESEAARRIKTEFLVQMQGVGVDND-GILVLGATNIPWVLDSAIRRRFEKRIYIPL 178
Query: 334 P 334
P
Sbjct: 179 P 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 243 bits (621), Expect = 8e-79
Identities = 76/180 (42%), Positives = 116/180 (64%), Gaps = 3/180 (1%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
I+ E+ N W+++AGLE K+ L ++VI P+K +L K G KP GILLYGPPG GK+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKS 65
Query: 215 MIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274
+AKA A EAN +F ++ S L K GES KL +F++A + +P IIFID++D+L +
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 275 RSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLP 334
R + EA+ ++K+ L + +G+ D ++++GATN P +D AI RR ++ +I LP
Sbjct: 126 RGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPWQLDSAIRRRFERRIYIPLP 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 228 bits (583), Expect = 1e-72
Identities = 80/202 (39%), Positives = 125/202 (61%), Gaps = 3/202 (1%)
Query: 133 KKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLK 192
++ G D G + N ++ I+ E+ N W+++AGLE K+ L ++VI P+K +L K
Sbjct: 19 QEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK 78
Query: 193 ESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIF 252
G KP GILLYGPPG GK+ +AKA A EAN +F ++ S L K GES KL +F
Sbjct: 79 --GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 136
Query: 253 SLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATN 312
++A + +P IIFID++D+L +R + EA+ ++K+ L + +G+ D ++++GATN
Sbjct: 137 AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATN 195
Query: 313 RPDDIDPAIARRMPKKYHIKLP 334
P +D AI RR ++ +I LP
Sbjct: 196 IPWQLDSAIRRRFERRIYIPLP 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 225 bits (574), Expect = 2e-70
Identities = 84/185 (45%), Positives = 114/185 (61%), Gaps = 4/185 (2%)
Query: 151 AANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPG 210
IV E N W ++AGLE K+ L ++VI P+K +L G P +GILL+GPPG
Sbjct: 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPG 177
Query: 211 CGKTMIAKATAKEANVS-FINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEID 269
GK+ +AKA A EAN S F ++ S L K GES KL +F LA + +P IIFIDEID
Sbjct: 178 TGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID 237
Query: 270 SLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY 329
SL SRS ++ EA ++K+ FL + G+ D + I+++GATN P +D AI RR K+
Sbjct: 238 SLCGSRSENESEAARRIKTEFLVQMQGVGVDND-GILVLGATNIPWVLDSAIRRRFEKRI 296
Query: 330 HIKLP 334
+I LP
Sbjct: 297 YIPLP 301
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 183 bits (466), Expect = 3e-56
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W +I LE I++EL +++ P++N + K GL P G+LL GPPGCGKT++AKA A
Sbjct: 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGL-VTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E+ ++FI++ L + GES + +F A+ PC+IF DE+D+L RS + A
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
+ ++ + L++ DGL + + IM ATNRPD IDPAI R R+ K + LP
Sbjct: 127 SVRVVNQLLTEMDGLEARQQ--VFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 182 bits (465), Expect = 9e-56
Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++I GLE +K+EL + V +P+++ + + G+ P KG+L YGPPGCGKT++AKA A
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHE- 281
E +FI++ L +GES IF A + PC++F DE+DS+ ++R + +
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 282 --ATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
A ++ + L++ DG++T KN + I+GATNRPD IDPAI R R+ + +I LP
Sbjct: 132 GGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 190 bits (485), Expect = 7e-55
Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++I GLE +K+EL + V +P+++ + + G+ P KG+L YGPPGCGKT++AKA A
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHE- 281
E +FI++ L +GES IF A + PC++F DE+DS+ ++R + +
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 282 --ATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
A ++ + L++ DG++T KN + I+GATNRPD IDPAI R R+ + +I LP
Sbjct: 594 GGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648
Score = 176 bits (447), Expect = 1e-49
Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ ++ G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E F ++ + KL GES F AEK P IIFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARR 324
++ S L+ DGL + +I+M ATNRP+ IDPA+ RR
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPAL-RR 359
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 177 bits (450), Expect = 1e-53
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+++I GLE +E+ + V P+K+ L ++ G+ +PPKGILLYGPPG GKT++AKA A
Sbjct: 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E N +FI + S L K GE L IF LA++ P IIFIDEID++ R+ +
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 283 TAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
+++ L++ DG ++ II ATNRPD +DPAI R R + + P
Sbjct: 134 DREVQRTLMQLLAEMDGFDARGDV-KIIG-ATNRPDILDPAILRPGRFDRIIEVPAP 188
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 178 bits (453), Expect = 4e-52
Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ +I G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E F ++ + KL GES F AEK P IIFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323
++ S L+ DGL + +I+M ATNRP+ IDPA+ R
Sbjct: 321 ERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRR 359
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 151 bits (383), Expect = 1e-43
Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 20/186 (10%)
Query: 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEAN 225
+ G +++ V+ KN LK + K P + ++G G GK+ + ++
Sbjct: 5 KLDGFYIAPAFMDKLVVHITKN--FLKLPNI-KVPLILGIWGGKGQGKSFQCELVFRKMG 61
Query: 226 VSFINLDISTLTDKLYGESPKLATAIFSLAEKI----QPCIIFIDEIDSLLRSR------ 275
++ I + L GE KL + A +I C +FI+++D+
Sbjct: 62 INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 121
Query: 276 SSSDHEATAQLKSIFLSKW----DGL-TTDKNIDIIIMGATNRPDDIDPAIAR--RMPKK 328
+ ++ A L +I + G+ +N + I+ N + + R RM K
Sbjct: 122 TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181
Query: 329 YHIKLP 334
Y
Sbjct: 182 YWAPTR 187
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 125 bits (317), Expect = 3e-34
Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 18/185 (9%)
Query: 160 INGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKA 219
+ S+K++AG+ K E+ + V + +K+ + G K PKG LL GPPGCGKT++AKA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKA 58
Query: 220 TAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS- 278
A EA V F+ + + + + G ++F A PCI++IDEID++ + RS++
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 279 ------DHEATA-QLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKY 329
+ E T QL L + DG+ T + +I++ +TNR D +D A+ R R+ +
Sbjct: 119 SGFSNTEEEQTLNQL----LVEMDGMGTTDH--VIVLASTNRADILDGALMRPGRLDRHV 172
Query: 330 HIKLP 334
I LP
Sbjct: 173 FIDLP 177
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 124 bits (313), Expect = 8e-34
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 9/188 (4%)
Query: 152 ANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGC 211
++ E ++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGV 60
Query: 212 GKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSL 271
GKT +A+A A EA V FI S + G +F A++ PCI+FIDEID++
Sbjct: 61 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120
Query: 272 LRSRSSS---DHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMP 326
R R S ++ Q + L + DG +K+ I++M ATNRPD +DPA+ R R
Sbjct: 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFD 178
Query: 327 KKYHIKLP 334
++ I P
Sbjct: 179 RQIAIDAP 186
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 123 bits (312), Expect = 1e-33
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGK 213
++ ++I ++ ++AG + K+E+ + V + ++ + ++ G K PKG+L+ GPPG GK
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGK 58
Query: 214 TMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273
T++AKA A EA V F + S + G +F A+K PCIIFIDEID++ R
Sbjct: 59 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118
Query: 274 SRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKK 328
R + H+ Q + L + DG + N II++ ATNRPD +DPA+ R R ++
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQ 176
Query: 329 YHIKLP 334
+ LP
Sbjct: 177 VVVGLP 182
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 121 bits (305), Expect = 2e-32
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 9/185 (4%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
++ E ++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKT 87
Query: 215 MIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274
+A+A A EA V FI S + G +F A++ PCI+FIDEID++ R
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 275 RSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKY 329
R S ++ Q + L + DG +K+ I++M ATNRPD +DPA+ R R ++
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205
Query: 330 HIKLP 334
I P
Sbjct: 206 AIDAP 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 120 bits (304), Expect = 2e-32
Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 15/177 (8%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
I E+ N +K++AG E K+E+ + V F +K G K PKG+LL GPPG GKT
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKT 58
Query: 215 MIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274
++AKA A EA+V F ++ S+ + G +F A+K P IIFIDEID++ +S
Sbjct: 59 LLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKS 118
Query: 275 RSSS-------DHEATA-QLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323
R++ + E T QL L++ DG ++ N +I++ ATNRP+ +DPA+ R
Sbjct: 119 RAAGGVVSGNDEREQTLNQL----LAEMDGFGSE-NAPVIVLAATNRPEILDPALMR 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 115 bits (291), Expect = 1e-30
Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 18/181 (9%)
Query: 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223
I + ++ ++ P +LL GPP GKT +A A+E
Sbjct: 32 MNGIIKWGDPVTRVLDDGELLVQQ----TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87
Query: 224 ANVSFINLDISTLTDKLYGESPKLA-TAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
+N FI + + A IF A K Q + +D+I+ LL +
Sbjct: 88 SNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFS 147
Query: 283 ---TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY--HIKLPLLS 337
L L + ++I+G T+R D + M + I +P ++
Sbjct: 148 NLVLQAL----LVLLKKAPP-QGRKLLIIGTTSRKDVLQ---EMEMLNAFSTTIHVPNIA 199
Query: 338 S 338
+
Sbjct: 200 T 200
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 107 bits (270), Expect = 4e-26
Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 15/166 (9%)
Query: 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224
K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT +A+A A EA
Sbjct: 31 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEA 88
Query: 225 NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSS------ 278
V FI S + G +F A++ PCI+FIDEID++ R R S
Sbjct: 89 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND 148
Query: 279 DHEATA-QLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323
+ E T QL L + DG +K+ I++M ATNRPD +DPA+ R
Sbjct: 149 EREQTLNQL----LVEMDGF--EKDTAIVVMAATNRPDILDPALLR 188
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 106 bits (268), Expect = 5e-26
Identities = 66/178 (37%), Positives = 93/178 (52%), Gaps = 39/178 (21%)
Query: 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224
K++ G E +EL + V F +K+ + G + PKGILL GPPG GKT++A+A A EA
Sbjct: 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 225 NVSFINL---DI---------STLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLL 272
NV F ++ D + + D +F+ A+ PCI+FIDEID++
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRD------------LFAQAKAHAPCIVFIDEIDAVG 121
Query: 273 RSRSSS------DHEATA-QLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323
R R + + E T QL L + DG D II+M ATNRPD +DPA+ R
Sbjct: 122 RHRGAGLGGGHDEREQTLNQL----LVEMDGF--DSKEGIIVMAATNRPDILDPALLR 173
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 71.7 bits (175), Expect = 2e-14
Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 20/183 (10%)
Query: 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGL--LKPPKGILLYGPPGCGKTMIAKATA 221
+ + GL+ +K + ++ + ++ GL P + G PG GKT +A A
Sbjct: 30 DRELIGLKPVKDRIRETAAL-LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88
Query: 222 KE-------ANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRS 274
+++ L + G + + ++ ++FIDE L R
Sbjct: 89 GLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAMGGVLFIDEAYYLYRP 145
Query: 275 RSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDD---IDPAIARRMPKKYHI 331
+ D+ A L + D + +I+ G +R ++ +P R+
Sbjct: 146 DNERDYGQEAIEI---LLQVMENNRDDLV-VILAGYADRMENFFQSNPGFRSRIAHHIEF 201
Query: 332 KLP 334
Sbjct: 202 PDY 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 2e-11
Identities = 54/313 (17%), Positives = 97/313 (30%), Gaps = 75/313 (23%)
Query: 75 FAVNFFFKKYQELFVDRTTNKLMATHQDTNHVQCYFSDPSGTSTFNVLLAITTAYEKLKK 134
F NF K Q++ K + + ++ +H+ S L + ++ +
Sbjct: 29 FVDNFDCKDVQDMP------KSILSKEEIDHI---IMSKDAVSGTLRLFWTLLSKQE-EM 78
Query: 135 VGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKN------- 187
V V L K + I E+ S +E + N + +F N
Sbjct: 79 VQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 188 ---RNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA--------NVSFINL----- 231
R L E L+P K +L+ G G GKT +A + ++NL
Sbjct: 138 LKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 232 ---------DISTLTDKLYGESPKLATAIFSLAEKIQP-------------CIIFIDEI- 268
+ D + ++ I IQ C++ + +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 269 DS------------LLRSRSSS--DHEATAQLKSIFLSKW-DGLTTDKNIDIIIMGATNR 313
++ LL +R D + A I L LT D+ +++ R
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 314 PDDIDPAIARRMP 326
P D+ + P
Sbjct: 315 PQDLPREVLTTNP 327
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 56.1 bits (135), Expect = 6e-09
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 32/184 (17%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ + G E+ ++ ++ +K++ + +LL GPPG GKT +A A A+
Sbjct: 35 AASGLVGQENAREAC-GVIVELIKSKK--------MAGRAVLLAGPPGTGKTALALAIAQ 85
Query: 223 E--ANVSFINLDISTLTDKLYGESPKLATAIF-SLAEKIQ-PCIIFIDEIDSLLRSRSSS 278
E + V F + S + ++ L ++ +I+ ++ E+ L + +
Sbjct: 86 ELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145
Query: 279 DHEATAQLKSIFLSKWDGLTTDKNID-------------------IIIMGATNRPDDIDP 319
+ S + K + I I +
Sbjct: 146 PMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGR 205
Query: 320 AIAR 323
Sbjct: 206 CDTY 209
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 54.2 bits (131), Expect = 2e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY-GES-----PKLATAIFSLAE 256
ILL GP G GKT++A+ AK ++ D ++LT+ Y GE +L A +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 257 KIQPCIIFIDEIDSLLR 273
K Q I+FIDEID + R
Sbjct: 135 KAQKGIVFIDEIDKISR 151
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 53.8 bits (130), Expect = 2e-08
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 188 RNLLKESGLLK-------PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240
RN + L+ PK IL+ GP G GKT IA+ AK AN FI ++ + T+
Sbjct: 32 RNRWRR-MQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90
Query: 241 Y---GESPKLATAIFSLAEKIQPC----IIFIDEIDSLLRSRSSSDHEATAQ------LK 287
Y + S I I+FIDEID + + S + + + L
Sbjct: 91 YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP 150
Query: 288 ----SIFLSKWDGLTTDKNIDIIIMGA--TNRPDDIDPAIARRMP 326
S +K + TD +I I GA RP D+ P + R+P
Sbjct: 151 LVEGSTVSTKHGMVKTD-HILFIASGAFQVARPSDLIPELQGRLP 194
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 53.7 bits (130), Expect = 2e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY-GES-----PKLATAIFSLAE 256
ILL GP G GKT++A+ A+ +V F D +TLT+ Y GE KL +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 257 KIQPCIIFIDEIDSLLR 273
K Q I++ID+ID + R
Sbjct: 114 KAQRGIVYIDQIDKISR 130
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 51.4 bits (123), Expect = 2e-07
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 19/141 (13%)
Query: 165 KNIAGLEHIKKELNQSV-IFPMKNRNLLKESGLLKPP--KGILLYGPPGCGKTMIAKATA 221
+ + G + +L + + +N K +G + +LYGPPG GKT A A
Sbjct: 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98
Query: 222 KEANVSFINLD------ISTLTDKLYG--ESPKLATAIFSLAEKIQPC----IIFIDEID 269
+E + + + L + ++ + E +I +DE+D
Sbjct: 99 QELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 158
Query: 270 SLLRSRSSSDHEATAQLKSIF 290
+ S D QL
Sbjct: 159 GM----SGGDRGGVGQLAQFC 175
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 47.1 bits (113), Expect = 4e-06
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 35/90 (38%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINL--------DISTLTDKLYGESPKLATAIFSL 254
++L+GPPG GKT +A+ A+ AN + +I
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIR---------------EAIER 97
Query: 255 AEKI----QPCIIFIDEI--------DSLL 272
A + + I+F+DE+ D+ L
Sbjct: 98 ARQNRNAGRRTILFVDEVHRFNKSQQDAFL 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 46.7 bits (110), Expect = 5e-06
Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 32/161 (19%)
Query: 188 RNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE----ANVSFINLDISTLT------ 237
N L+ G L G PG GKT+ + + F+ ++
Sbjct: 34 GNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAII 91
Query: 238 ----DKLYGESPKLATAIFSLAEKIQ--------PCIIFIDEIDSLLRSRSSSDHEATAQ 285
L P+ + + + +D+ +L + +
Sbjct: 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------APDILST 144
Query: 286 LKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMP 326
+ + D L + +I+ +++DP+ M
Sbjct: 145 FIRLG-QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 184
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 45.1 bits (106), Expect = 2e-05
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 46/164 (28%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKE-----------ANVSFINLDISTLTDKLY------- 241
L G G GKT ++K E +V ++ +
Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLA 104
Query: 242 -----------GESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIF 290
G + + II++DE+D+L++ R L +
Sbjct: 105 GKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIV-----LYQLL 159
Query: 291 LSKWDGLTTDKNIDIIIMGATNR---PDDIDPAIARRMPKKYHI 331
+ +I ++ +N D ++P + +
Sbjct: 160 ---------RSDANISVIMISNDINVRDYMEPRVLSSLGPSVIF 194
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 43.1 bits (100), Expect = 7e-05
Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 25/155 (16%)
Query: 182 IFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY 241
L++ ++ P LL G PG GKT + A +E + I +D D
Sbjct: 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID----NDTFK 70
Query: 242 GESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDK 301
+ P D L++ + + +D+
Sbjct: 71 QQHP---------------------NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ 109
Query: 302 NIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLL 336
+++I G D K Y K+ ++
Sbjct: 110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVM 144
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 41.8 bits (97), Expect = 2e-04
Identities = 23/197 (11%), Positives = 52/197 (26%), Gaps = 48/197 (24%)
Query: 162 GSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKP------PKGILLYGPPGCGKTM 215
G +I E I++ L + + + + + + K + K
Sbjct: 1 GPNADINLEESIRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQ 60
Query: 216 IAKATAKE----------ANVSFINLD----------ISTLTDKLYGESPKLATAIFSL- 254
+ E +I++D + + E+ ++ +L
Sbjct: 61 LVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALN 120
Query: 255 -------AEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIII 307
K + +I I ++LL + L+ + KN + I
Sbjct: 121 FYITNVPKAKKRKTLILIQNPENLLSEKI---------LQYFE-----KWISSKNSKLSI 166
Query: 308 MGATNRPDDIDPAIARR 324
+ I I
Sbjct: 167 ICVGGHNVTIREQINIM 183
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 40.9 bits (95), Expect = 2e-04
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL 240
+ I+L G GK+ I + ++ + +L + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 40.7 bits (95), Expect = 2e-04
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
++ P I++ G P GKT +++A A + ++ D
Sbjct: 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 40.8 bits (96), Expect = 2e-04
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 188 RNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA-----NVSFINLDISTLTDKL 240
+ E K KG+ L+G G GKT + A A E + + + L +L
Sbjct: 42 ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV--PELFREL 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 40.3 bits (95), Expect = 3e-04
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 178 NQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ S + NL +S + I L G G GKT + KA A++ NV FI+LD
Sbjct: 6 HHSSGVDLGTENLYFQSNAMVR---IFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 41.2 bits (97), Expect = 4e-04
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAE 256
+ +LL G PG GK+M+ +A A+ + DI + P++ T
Sbjct: 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLE-DILVFPNPEDENMPRIKTVPACQGR 115
Query: 257 KIQPCIIFIDEIDSLLRSRS 276
+I + ++S +
Sbjct: 116 RIVEKYREKAKSQESVKSSN 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 39.7 bits (92), Expect = 5e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ P I++ G G GK+ + +A A+ FI D
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 40.0 bits (94), Expect = 6e-04
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 35/119 (29%)
Query: 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE-- 223
+ G + + + L V + +N+ P +L GPPG GKT A A A++
Sbjct: 18 EVVGQDEVIQRLKGYV----ERKNI---------PH-LLFSGPPGTGKTATAIALARDLF 63
Query: 224 -----ANVSFINL-D---ISTLTDKL--YGESPKLATAIFSLAEKIQPCIIFIDEIDSL 271
N +N D I + K+ + + + A F K IIF+DE D+L
Sbjct: 64 GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPF----K----IIFLDEADAL 114
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 39.3 bits (91), Expect = 8e-04
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 32/162 (19%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANV-----------------------SFINLDISTLTDK 239
L+ G PG GKT+ + + ++I D L
Sbjct: 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKS 67
Query: 240 LYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTT 299
+ + + I+ +DE + +RS+ ++ + + G
Sbjct: 68 TDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQG--- 123
Query: 300 DKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSSFSL 341
IDI ++ T P +D + + K YHI + +L
Sbjct: 124 ---IDIFVL--TQGPKLLDQNLRTLVRKHYHIASNKMGMRTL 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 39.1 bits (92), Expect = 8e-04
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 203 ILLYGPPGCGKTMIAKATAKE-------ANVSFINL-D---ISTLTDKLYGESPKLATAI 251
+L GPPG GKT A A A++ N +N D I + K+ + I
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART--API 98
Query: 252 FSLAEKIQPCIIFIDEIDSL 271
K IIF+DE D+L
Sbjct: 99 GGAPFK----IIFLDEADAL 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 40.0 bits (93), Expect = 8e-04
Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 33/166 (19%)
Query: 188 RNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE------ANVSFINLD--------- 232
++L + P I +YG G GKT + K + + ++
Sbjct: 33 ASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYR 92
Query: 233 -ISTLTDKLYGESPKLATAIFSL--------AEKIQPCIIFIDEIDSLLRSRSSSDHEAT 283
++ L + L + P +I L + +I +DEID+ + + + D
Sbjct: 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFV-KKYNDDILYK 151
Query: 284 AQLKSIFLSKWDGLTTDKNIDII-IMGATNRPDDIDPAIARRMPKK 328
LS+ + I I I D +DP + + ++
Sbjct: 152 -------LSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEE 190
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 39.5 bits (91), Expect = 9e-04
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 25/134 (18%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQ 259
P ILL G G GKT I + KE + + +D D + P
Sbjct: 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID----GDSFRSQHPH------------- 74
Query: 260 PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDP 319
L + E T + + +++I G D
Sbjct: 75 --------YLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKK 126
Query: 320 AIARRMPKKYHIKL 333
K Y ++L
Sbjct: 127 TAQLLKNKGYEVQL 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 38.5 bits (89), Expect = 0.001
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+LL G PG GK+ IA+A A V ++
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 39.3 bits (92), Expect = 0.001
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 203 ILLYGPPGCGKTMIAKATAKE-------ANVSFIN------LDISTLTDKLYGESPKLAT 249
+L GPPG GKT A A A+E N +N +++ K + + +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGG 108
Query: 250 AIFSLAEKIQPCIIFIDEIDSL 271
A F K IIF+DE D+L
Sbjct: 109 ASF----K----IIFLDEADAL 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEA 224
+ KG+ G PG GKT +A AT K
Sbjct: 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 37.9 bits (89), Expect = 0.001
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ I L GP G GK+ I + A++ N+ F + D
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 37.9 bits (89), Expect = 0.002
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
K I L G G GKT + AK + D
Sbjct: 3 KNLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 38.9 bits (90), Expect = 0.002
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 23/128 (17%)
Query: 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKN--RNLLKESGLLKPPK--GILLYGPPGCGK 213
W H L + + + + ++ PK L GP GK
Sbjct: 131 SADIEEWMAGVAWLHC---LLPKMDSVVYDFLKCMVY-----NIPKKRYWLFKGPIDSGK 182
Query: 214 TMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQ---------PCIIF 264
T +A A + +N ++ D+L E + E ++ P
Sbjct: 183 TTLAAALLELCGGKALN--VNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQG 240
Query: 265 IDEIDSLL 272
I+ +D+L
Sbjct: 241 INNLDNLR 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 38.1 bits (88), Expect = 0.002
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+P + +++ G G GKT IA A E + F D
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEAD 61
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 38.3 bits (90), Expect = 0.002
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 17/71 (23%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYG---ESPK-LATAIFSLAEKI 258
+LL+GPPG GKT +A A E V NL +++ G E P LA AI LA +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGV---NLRVTS------GPAIEKPGDLA-AI--LANSL 88
Query: 259 QPC-IIFIDEI 268
+ I+FIDEI
Sbjct: 89 EEGDILFIDEI 99
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 38.3 bits (90), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSF 228
IL GP G GKT +A + E + +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANI 83
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 38.6 bits (89), Expect = 0.002
Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 32/166 (19%)
Query: 188 RNLLKESGLLKPPKGILLYGPPGCGKTMIAK---------ATAKEANVSFINLDISTLTD 238
+L + + P LLYG G GKT +A+ A++ V I ++
Sbjct: 32 AEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91
Query: 239 KL------------------YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDH 280
+ L+ II +DEID L + D
Sbjct: 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQD- 150
Query: 281 EATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMP 326
L I + + I + ++++P + +
Sbjct: 151 ----LLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG 192
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 38.3 bits (89), Expect = 0.002
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKE 223
KG+ LYG G GK+ + A A E
Sbjct: 150 AEQKGLYLYGDMGIGKSYLLAAMAHE 175
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 37.3 bits (86), Expect = 0.003
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
ILL G PG GKT + K A ++ + +IN+
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 36.9 bits (85), Expect = 0.003
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+L G G GK+ +A A + + +F++ D
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 37.9 bits (89), Expect = 0.003
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSF 228
+LL GPPG GKT +A A E +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 37.2 bits (87), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ I + G GCG T + + A+ F++ D
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTD 34
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 37.8 bits (87), Expect = 0.003
Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 47/153 (30%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD--------------ISTLTDKLY 241
L+ LL G GK+ + +A E I+ I L +
Sbjct: 27 SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTIS 86
Query: 242 GESPKLAT------------------------AIFSLAEKIQPCIIFIDEIDSLLRSRSS 277
+ + L E++ I+ DE L S
Sbjct: 87 PFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR 146
Query: 278 SDHEATAQLKSIFLSKWDG-LTTDKNIDIIIMG 309
L+ + + N+ II+ G
Sbjct: 147 GG--------KELLALFAYAYDSLPNLKIILTG 171
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 36.8 bits (86), Expect = 0.004
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
K I+ G G GK+ +A+A AK+ ++ F++ D
Sbjct: 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 38.3 bits (89), Expect = 0.004
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAK---EANVSFINLDIST--------LTDKLYGES 244
L + ++L GPPG GKTM +T + + V +N +T +
Sbjct: 1300 WLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKR 1359
Query: 245 PKLATAIFSLAEKIQPCIIFIDEIDS 270
+ + + ++F DEI+
Sbjct: 1360 TPSGETVLRPTQLGKWLVVFCDEINL 1385
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 37.7 bits (88), Expect = 0.004
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFI 229
PK IL+ GP G GKT IA+ AK AN FI
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 36.6 bits (85), Expect = 0.004
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
I+L GP C K+ +A +KE I
Sbjct: 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 37.0 bits (86), Expect = 0.004
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230
+ I K+ + V + R+ + L G G GKT + K A+ +F +
Sbjct: 32 QQILKKKAEEVKPYLNGRS-------------MYLVGMMGSGKTTVGKIMARSLGYTFFD 78
Query: 231 LD 232
D
Sbjct: 79 CD 80
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 36.4 bits (85), Expect = 0.005
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ ++L G G GK+ +A+ + ++ D
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 37.0 bits (86), Expect = 0.006
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 203 ILLYGPPGCGKTMIAKATAK 222
+ L GPPG K++IA+
Sbjct: 44 VFLLGPPGIAKSLIARRLKF 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 50/317 (15%), Positives = 80/317 (25%), Gaps = 126/317 (39%)
Query: 60 LMHFGKFATTAIVS---YFAVN----FFFKKYQELFVDRTTNKLMATHQDT--------- 103
L H G +V +F + F K E T A + T
Sbjct: 11 LSH-GSLEHVLLVPTASFFIASQLQEQFNKILPE-----PTEGFAADDEPTTPAELVGKF 64
Query: 104 -NHVQCYFSDPSGTSTFNVLLAITTAYEK--LKKVGLDVGNKLNTHELKIAANLIVPEEI 160
+V VL T +E L+ G D+ H L AA L+ +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDI------HAL--AAKLLQENDT 114
Query: 161 NGSWKNIAGLEHIKKELNQSVIFPMKN----RNLLKESGLLKPPKGILLYGPPGCGKTMI 216
+K + +I KN R + K K L
Sbjct: 115 ----------TLVKT---KELI---KNYITARIMAKRP-FDKKSNSALF----------- 146
Query: 217 AKATAKEANVSFINLDISTLTDKLYGESPKLATAIFS-----------LAE--KIQPCII 263
A +L AIF L + + ++
Sbjct: 147 RAVGEGNA--------------QLV--------AIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 264 --FIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDII--IMGATNRPDDIDP 319
I L + +A + +F + ++I+ + +N PD
Sbjct: 185 GDLIKFSAETLSELIRTTLDA----EKVF---------TQGLNILEWLENPSNTPDKDYL 231
Query: 320 AIARRMPKKYHIKLPLL 336
P I PL+
Sbjct: 232 LSI---P----ISCPLI 241
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 35.6 bits (83), Expect = 0.008
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ P +L G PG GK+ I + AK V ++ D
Sbjct: 1 MAPK--AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 36.5 bits (85), Expect = 0.012
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 194 SGLLKPPKGI---LLYGPPGCGKTMIAKATAKEANVSFINLDIS 234
+GL K + L GP G GKT + +K + + D+S
Sbjct: 479 AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522
Score = 31.1 bits (71), Expect = 0.59
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 204 LLYGPPGCGKTMIAKATAKE----------ANVSFINLDISTL---TDKLYGESPKLATA 250
LL G G GKT IA+ A A+ + +LDI +L T K G+ K A
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT-KYRGDFEKRFKA 269
Query: 251 IFSLAEKIQPCIIFIDEI 268
+ E+ I+FIDEI
Sbjct: 270 LLKQLEQDTNSILFIDEI 287
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 35.3 bits (81), Expect = 0.013
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFI 229
++ GP G GK+ K A + + S
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 34.8 bits (81), Expect = 0.014
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
I L G GK+ + ++ N+ F ++D
Sbjct: 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 35.5 bits (82), Expect = 0.018
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 202 GILLYGPPGCGKTMIAKATA 221
G+L++G G GK+ +A A
Sbjct: 47 GVLVFGDRGTGKSTAVRALA 66
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 35.3 bits (80), Expect = 0.025
Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 34/151 (22%)
Query: 198 KPPKGILLY---GPPGCGKTMIAKATAKE---------ANVSFINLD----------IST 235
++Y G G GKT +AK T K V ++ +S
Sbjct: 47 GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSL 106
Query: 236 LTDKLYGESP-------KLATAIFS-LAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLK 287
+ + + A+ L + ++ +DE S+L S + + L
Sbjct: 107 IVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAED----LY 162
Query: 288 SIFLSKWDGLTTDKNIDIIIMGATNRPDDID 318
++ + + D I + + +
Sbjct: 163 TLLRVHEEIPSRDGVNRIGFLLVASDVRALS 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 34.3 bits (78), Expect = 0.030
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEAN-VSFINLDISTLTDKLYGE 243
K IL+ G PG GKT +A+ A E + + + + Y E
Sbjct: 9 KGIN-ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTE 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 34.8 bits (80), Expect = 0.030
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 30/122 (24%)
Query: 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE-- 223
+ +H L +++ K+ NL P +L YGPPG GKT A KE
Sbjct: 38 EVTAQDHAVTVLKKTL----KSANL---------PH-MLFYGPPGTGKTSTILALTKELY 83
Query: 224 ------ANVSFINL----DISTLTDKLYGESPKLATAIFSLAEKIQPC----IIFIDEID 269
+ + +N IS + +K+ + + + PC II +DE D
Sbjct: 84 GPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEAD 143
Query: 270 SL 271
S+
Sbjct: 144 SM 145
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 34.3 bits (78), Expect = 0.034
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFID 266
G G ++ K A+E + F + DI L + + EK +++
Sbjct: 21 REYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQF---FRLADEKAGNNLLYRL 77
Query: 267 EIDSLLRSRSSSD 279
+ S
Sbjct: 78 GGGRKIDLHSKPS 90
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 34.8 bits (80), Expect = 0.041
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESP--KLATAIFS-LAE 256
P + +YG GCGK+++A + D S L G + S L
Sbjct: 147 PGWVTIYGMAGCGKSVLAAEAVR---------DHSLLEGCFSGGVHWVSIGKQDKSGLLM 197
Query: 257 KIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293
K+Q + +D+ +S + + EA +L+ + L K
Sbjct: 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 34.3 bits (78), Expect = 0.043
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQP 260
L+ G GK+ I K E N+ +I LD+ ++ Y + L ++I
Sbjct: 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDF---LLELQKEINK 87
Query: 261 CIIFIDEIDSLLRSRSS 277
+ + + L++
Sbjct: 88 LVKRLPSLLKALKNIQG 104
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 33.9 bits (77), Expect = 0.051
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFID 266
G G ++AK A+ N+ + ++ K S ++ + EK P
Sbjct: 13 REFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEV---LERFDEK--PMNFAFI 67
Query: 267 EIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMG 309
+ + + S A Q I ++ +I+G
Sbjct: 68 PVPAGGTTISLEQDIAIRQFNFIRK-----KANEEKESFVIVG 105
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 34.0 bits (79), Expect = 0.063
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 196 LLKPPKG-IL-LYGPPGCGKTMIAKATAKEANVSFI 229
L K KG IL L GPPG GKT +AK+ AK F+
Sbjct: 102 LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 34.1 bits (78), Expect = 0.070
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 36/134 (26%)
Query: 200 PKG--ILLYGPPGCGKTMIAKATAKEAN--------VSF-------------INLDISTL 236
K IL G G GKT++ + A ++ +D +
Sbjct: 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM 338
Query: 237 TD----KLYGESP------KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSD-HEATAQ 285
K+ P I S +P I ID + +L R S++ +
Sbjct: 339 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG 398
Query: 286 LKSIFLSKWDGLTT 299
+ + +T
Sbjct: 399 VTGYAKQE--EITG 410
Score = 30.3 bits (68), Expect = 0.92
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 200 PKG--ILLYGPPGCGKTMIA 217
P G L+ G G GKT+ +
Sbjct: 37 PIGRSTLVSGTSGTGKTLFS 56
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 33.4 bits (77), Expect = 0.076
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 186 KNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK----EANVSFINLDISTLTD 238
KNR LL + G++ G G GKT++ + + ++ I D+ D
Sbjct: 28 KNRKLLNKHGVVA----FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFD 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 33.6 bits (77), Expect = 0.079
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223
+ G + + + V L P +L YGPPG GKT A A+E
Sbjct: 26 EVYGQNEVITTVRKFV----DEGKL---------PH-LLFYGPPGTGKTSTIVALARE 69
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 33.0 bits (76), Expect = 0.089
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 186 KNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK----EANVSFINLDISTLTD 238
KNR L+ESG + + + G G GKT++ + T + E + + D+ + D
Sbjct: 20 KNREALRESGTVA----VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKAD 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 33.1 bits (76), Expect = 0.094
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE- 223
+I G + L Q K+ N+ P +++ G PG GKT A E
Sbjct: 21 SDIVGNKETIDRLQQIA----KDGNM---------PH-MIISGMPGIGKTTSVHCLAHEL 66
Query: 224 ------ANVSFINL-D---ISTLTDKLYGESPKLATAIFSLAEKIQPC----IIFIDEID 269
V +N D I + +++ F+ + P I+ +DE D
Sbjct: 67 LGRSYADGVLELNASDDRGIDVVRNQIKH---------FAQKKLHLPPGKHKIVILDEAD 117
Query: 270 SL 271
S+
Sbjct: 118 SM 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 33.1 bits (76), Expect = 0.097
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 21/79 (26%)
Query: 203 ILLYGP-PGCGKTMIAKATAKE--ANVSFIN---LDISTLTDKLYGESPKLATAIFSLAE 256
I+L+ P PG GKT +AKA + A++ F+N I + + + A
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGP-----------LTNFAS 98
Query: 257 KIQPC----IIFIDEIDSL 271
+I IDE D
Sbjct: 99 AASFDGRQKVIVIDEFDRS 117
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 32.9 bits (76), Expect = 0.12
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSF 228
ILL G PG KT+ AK ++ F
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDF 74
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 32.1 bits (73), Expect = 0.16
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 159 EINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKG--ILLYGPPGCGKTMI 216
+ G W+ I ++ + + + F ++ LK PK ++ GP GK+
Sbjct: 22 DEGGDWRPIVQF--LRYQQIEFITFLGALKSFLK-----GTPKKNCLVFCGPANTGKSYF 74
Query: 217 AKATAKEAN---VSFIN 230
+ +SF+N
Sbjct: 75 GMSFIHFIQGAVISFVN 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 32.4 bits (74), Expect = 0.18
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 202 GILLYGPPGCGKTMIAKATAK 222
+L+ PG G + A ++
Sbjct: 26 ALLIQALPGMGDDALIYALSR 46
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 32.2 bits (73), Expect = 0.22
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ K ++L G G GK+ ++ A + IN D
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.5 bits (74), Expect = 0.22
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAKEAN---VSFINLD--------ISTLTDKLYGES 244
LL +GI+L GPPG GKTMI + ++ V IN +S L +
Sbjct: 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVT 1322
Query: 245 PKLATAIFSLAEKIQPCIIFIDEID 269
I+ ++F DEI+
Sbjct: 1323 -TSKGLTLLPKSDIKNLVLFCDEIN 1346
Score = 28.3 bits (63), Expect = 5.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 202 GILLYGPPGCGKTMIAKATAK 222
++L G GCGKT K
Sbjct: 925 ALILVGKAGCGKTATWKTVID 945
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 31.8 bits (72), Expect = 0.26
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPK--GILLYGPPGCGKTMIAK 218
GSWK+I + + + F + LK PK + GPP GK+M+
Sbjct: 92 EGSWKSILTF--FNYQNIELITFINALKLWLK-----GIPKKNCLAFIGPPNTGKSMLCN 144
Query: 219 ATAKEAN---VSFIN 230
+ +SF N
Sbjct: 145 SLIHFLGGSVLSFAN 159
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 32.0 bits (72), Expect = 0.27
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 200 PKGILLYGPPGCGKTMIAKA-TAKEANVSFINLD 232
K IL G PG GK+ A+ AK IN D
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 31.8 bits (72), Expect = 0.27
Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 28/148 (18%)
Query: 203 ILLYGPPGCGKTMIAKATAKE-ANVSFINLDISTLTDKLYGESPKLATAIFSLA------ 255
+LLYGP G GK A + L I + S
Sbjct: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
Query: 256 --EKIQPCIIFIDEIDSLLRSR----SSSDHEATAQLKSIFLSKWDGLTTD--------- 300
I+ + + + + S + K + +++ + LT D
Sbjct: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
Query: 301 ----KNIDIIIMGATNRPDDIDPAIARR 324
KNI +I+ + I I +
Sbjct: 159 EKYSKNIRLIM--VCDSMSPIIAPIKSQ 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.6 bits (71), Expect = 0.28
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 199 PPKGI-LLYGPPGCGKTMIA 217
+ L P G GK+M+A
Sbjct: 28 VAGTVGALVSPGGAGKSMLA 47
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 31.3 bits (71), Expect = 0.37
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
L+YGP GKT +A A+E + LD
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.5 bits (69), Expect = 0.56
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 200 PKGILLYGPPGCGKTMIAKA-TAKEANVSFINLD 232
K IL G PG GK+ A+ AK IN D
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 30.6 bits (69), Expect = 0.67
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDI 233
I+L G PG GK+ +K AK + + I++ +
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIV 37
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 30.7 bits (69), Expect = 0.73
Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 41/154 (26%)
Query: 203 ILLYGPPGCG-KTMIAKAT----AKEANVSFINLDIST-LTDK--LYGESPKLATAIFSL 254
+ +GP GC T + ++F ST + + ++G KL AI
Sbjct: 70 HITHGPIGCSFYTWGGRRFKSKPENGTGLNFNEYVFSTDMQESDIVFGGVNKLKDAIHEA 129
Query: 255 AEKIQPCIIFI----------DEIDSLLR---------------------SRSSSDHEAT 283
E P I + D+I ++ S+S+ H A
Sbjct: 130 YEMFHPAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIAN 189
Query: 284 AQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317
+ + + K + K I ++G N D
Sbjct: 190 NTVMTDIIGKGN--KEQKKYSINVLGEYNIGGDA 221
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 29.8 bits (68), Expect = 0.83
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 197 LKPPKGILLYGPPGCGK 213
LK I + G PG GK
Sbjct: 6 LKKTNIIFVVGGPGSGK 22
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.0 bits (67), Expect = 1.0
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVS 227
+H++ Q P+K L + + G + A NV+
Sbjct: 99 DHVEDVNFQ----PVKYSALTSNNEEC-----TAVVARGGTANAIRIAAVDNPVNVN 146
Score = 30.0 bits (67), Expect = 1.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSF 228
++L G PG GK+ IA+ + N +
Sbjct: 27 VILVGSPGSGKSTIAEELCQIINEKY 52
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.9 bits (67), Expect = 1.1
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 200 PKG--ILLYGPPGCGKTMIA 217
P+G +LL G G GKT A
Sbjct: 28 PEGTTVLLTGGTGTGKTTFA 47
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 29.7 bits (67), Expect = 1.2
Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 50/148 (33%)
Query: 200 PKG--ILLYGPPGCGKTMIA--------------------------KATAK--------- 222
P+ +LL G PG GKT+ + +
Sbjct: 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPY 80
Query: 223 EANVSFINLDISTLTDKLYGESPK-----------LATAIFSLAEKIQPCIIFIDEIDSL 271
E F +D T E K + I + +D + +L
Sbjct: 81 EEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140
Query: 272 LRSRSSSDHEATAQLKSIFLSKWDGLTT 299
++ + QLK + G T+
Sbjct: 141 YINKPAMARSIILQLKRVL--AGTGCTS 166
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.8 bits (68), Expect = 1.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
P I L GP GKT +A A A I++D
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD 37
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 29.7 bits (66), Expect = 1.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 199 PPKGILLYGPPGCGKT----MIAKATAKEANVSFINLDI 233
++ G G GKT + V+++NLD
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 29.5 bits (66), Expect = 1.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 203 ILLYGPPGCGKTMIAKATAK 222
I L+GP GKT IA+A A
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 29.5 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 185 MKNRNLLKESGLLKPPKGILLY-GPPGCGKTMIAKATAKEA 224
M ++L K K + G G GKT I+ ATA
Sbjct: 1 MAFKDLFK---FNKGKTTFVFIGGKGGVGKTTISAATALWM 38
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 200 PKG--ILLYGPPGCGKTMIA 217
P+G I L G PG GKT+ +
Sbjct: 21 PQGFFIALTGEPGTGKTIFS 40
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 29.0 bits (66), Expect = 1.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 197 LKPPKGILLYGPPGCGK 213
L+ K I + G PG GK
Sbjct: 9 LRKCKIIFIIGGPGSGK 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 29.5 bits (67), Expect = 1.7
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 170 LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT----MIA 217
++++ K + + + N N+ E+G + GP G GKT +IA
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGER-----FGILGPSGAGKTTFMRIIA 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics,
structural genomics consortium, SGC, unknown function;
1.70A {Plasmodium falciparum}
Length = 187
Score = 28.9 bits (65), Expect = 1.7
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 205 LYGPPGCGKTMIAKATAKE----------ANVSFINLDISTLT--DKLYGE-SPKLATAI 251
L G PG GKT I + A + ++LD+S+L K G+ +L + +
Sbjct: 48 LLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSIL 107
Query: 252 FSLAEKIQPCIIFIDEI 268
+ + ++FIDEI
Sbjct: 108 KEVQDAEGQVVMFIDEI 124
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 29.3 bits (66), Expect = 1.8
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 129 YEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNR 188
+ L++ G+ N + E++ +L + + + +
Sbjct: 46 EKLLQETGIKE---------STKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSA 96
Query: 189 NLLKESGLLKPPKGILLYGPPGCGK-TMIAK 218
+ +E K I+L+G G GK T +AK
Sbjct: 97 DKWQEP---IHSKYIVLFGSTGAGKTTTLAK 124
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.4 bits (67), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
PK I L GP GKT +A K V I++D
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 29.1 bits (66), Expect = 1.9
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 5/18 (27%)
Query: 204 LLYGPPGCGKT----MIA 217
++ G GCGKT +A
Sbjct: 35 II-GASGCGKTTLLRCLA 51
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 28.7 bits (65), Expect = 2.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 184 PMKNRNLLKESGLLKPPKG--ILLYGPPGCGK 213
+ + SGL+ +LL GPPG GK
Sbjct: 3 SSHHHHH-HSSGLVPRGSHMRVLLLGPPGAGK 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 29.1 bits (65), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 203 ILLYGPPGCGKTMIAKATAKEAN 225
+L+ G PG GKT IA A+
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQALG 95
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 28.8 bits (64), Expect = 2.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 203 ILLYGPPGCGKTMIAKA 219
I + GP G GKT A
Sbjct: 8 IWINGPFGVGKTHTAHT 24
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 29.1 bits (64), Expect = 2.2
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 19/85 (22%)
Query: 170 LEHIKKELNQSVIFPM--KNRNLLKESGLLKPP-----------KGILLYGPPGCGKTMI 216
L H K+ IFP+ +L K S L PP K I GP GKT
Sbjct: 118 LRHAKQ------IFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYH 171
Query: 217 AKATAKEANVSFINLDISTLTDKLY 241
A A + L +++
Sbjct: 172 AIQKYFSAKSGVYCGPLKLLAHEIF 196
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.7 bits (65), Expect = 2.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 192 KESGLLKPPKGILLYGPPGCGK 213
+ + L KP + G PG GK
Sbjct: 21 RYACLSKPDGRYIFLGAPGSGK 42
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.0 bits (64), Expect = 2.3
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 177 LNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
+ R L + K +L+ G PGCGKT
Sbjct: 138 YSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKT 175
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 28.1 bits (63), Expect = 2.9
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 205 LYGPPGCGKTMIAKATAKE----------ANVSFINLDISTLT--DKLYGE-SPKLATAI 251
L G PG GKT I + A+ + LD+ L K GE +L +
Sbjct: 48 LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVL 107
Query: 252 FSLAEKIQPCIIFIDEIDSL 271
LA++ I+FIDE+ ++
Sbjct: 108 NDLAKQEGNVILFIDELHTM 127
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 28.7 bits (65), Expect = 3.1
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 205 LYGPPGCGKT----MIA 217
L GP G GKT +IA
Sbjct: 46 LLGPSGSGKTTILRLIA 62
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 28.7 bits (65), Expect = 3.2
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 5/18 (27%)
Query: 204 LLYGPPGCGKT----MIA 217
+L GP G GKT +IA
Sbjct: 31 IL-GPTGAGKTLFLELIA 47
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 205 LYGPPGCGKT----MIA 217
L GP G GK+ +IA
Sbjct: 29 LLGPTGAGKSVFLELIA 45
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by
two helices, DNA binding protein; NMR {Saccharomyces
cerevisiae} SCOP: a.60.8.1
Length = 81
Score = 26.5 bits (58), Expect = 3.4
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 122 LLAITTAYEKLKKVGLDVGNKLN 144
L + YE+L+++ L++GN++
Sbjct: 2 LNNLRMTYERLRELSLNLGNRMV 24
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.4 bits (64), Expect = 3.5
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 189 NLLKESGLLKPPKG--ILLYGPPGCGKTMIAKATA 221
N L G + + GP G GKT K A
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 138
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 28.3 bits (64), Expect = 3.6
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 203 ILLYGPPGCGKT----MIA 217
+ L GP G GK+ IA
Sbjct: 32 MALLGPSGSGKSTLLYTIA 50
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.2 bits (63), Expect = 3.7
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 215 MIAKATAKEANVSFINLDISTLT 237
MI KA ++ F D
Sbjct: 91 MIEKARQNYPHLHFDVADARNFR 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 3.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 203 ILLYGPPGCGKTMIAKATAKE 223
I++ G PG GKT + K +
Sbjct: 3 IIITGEPGVGKTTLVKKIVER 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 28.4 bits (64), Expect = 3.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 203 ILLYGPPGCGKT----MIA 217
++L GP GCGKT MIA
Sbjct: 40 LVLLGPSGCGKTTTLRMIA 58
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.4 bits (64), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 203 ILLYGPPGCGKT----MIA 217
++L GP GCGKT MIA
Sbjct: 32 MILLGPSGCGKTTTLRMIA 50
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.8 bits (61), Expect = 4.1
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPK 246
K ++ G PG GK+ + + + IN I D + + K
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALK 47
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 27.8 bits (63), Expect = 4.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLD 232
GP G GK+ +++ A+ + LD
Sbjct: 16 GPAGTGKSSVSRGLARA--LGARYLD 39
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 27.9 bits (62), Expect = 4.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 215 MIAKATAKEANVSFINLDISTLT 237
M+ KA + N +F D++T
Sbjct: 69 MLEKAADRLPNTNFGKADLATWK 91
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 27.8 bits (63), Expect = 4.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLD 232
GP G GK + KA A+ + + LD
Sbjct: 12 GPSGAGKGTLCKAMAEA--LQWHLLD 35
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 27.5 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
K IL+ G PG GK+ AK KE I +
Sbjct: 2 KVILITGMPGSGKSEFAK-LLKERGAKVIVMS 32
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 28.2 bits (63), Expect = 4.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFI 229
+ GP G GKT+ AK ++ +
Sbjct: 230 AAIPGPAGSGKTVTQHQLAKWSDAQVV 256
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.7 bits (61), Expect = 4.4
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPK 246
K +++ G PG G T ++ +N + + ++ + +
Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKE 49
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 27.8 bits (63), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLD 232
GP GK+ +AK AK+ F LD
Sbjct: 23 GPASSGKSTVAKIIAKDFG--FTYLD 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.0 bits (63), Expect = 4.5
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 175 KELNQSVIFPM-KNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATA 221
++L + + N +L ++K + + GP G GK+ K A
Sbjct: 21 EQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILA 68
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.1 bits (63), Expect = 4.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 195 GLLKPPKG--ILLYGPPGCGKTMIAKA 219
L P G + L G G GK+ K
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKI 122
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 27.9 bits (63), Expect = 4.8
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query: 203 ILLYGPPGCGKT----MIA 217
+ L GP GCGKT M+A
Sbjct: 32 VALLGPSGCGKTTTLLMLA 50
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 27.5 bits (62), Expect = 5.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 203 ILLYGPPGCGKTMIA 217
+YGP GKT +A
Sbjct: 23 TQVYGPYASGKTTLA 37
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.9 bits (62), Expect = 5.2
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 200 PKGILLYGPPGCGKT-MIAK--ATAKEANVSFINLDIS-TLTDKLYGE 243
P+ +L+ G G GK+ ++ + T + +D + + K +
Sbjct: 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRD 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 27.9 bits (62), Expect = 5.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 205 LYGPPGCGKTMIAKATAKEA 224
+G GKT ++ A
Sbjct: 127 AFGEFRTGKTQLSHTLCVTA 146
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 27.4 bits (62), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLD 232
GP GK+ IAK A E + I +D
Sbjct: 10 GPAAAGKSTIAKRVASELS--MIYVD 33
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 27.7 bits (61), Expect = 5.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKA 219
+ + + + GP G G T + K
Sbjct: 41 IKEKKHHVTINGPAGTGATTLTKF 64
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.7 bits (62), Expect = 5.9
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 203 ILLYGPPGCGKT----MIAKATAKEANVSFINLDISTL 236
+++ GP G GKT I+ N+ +++ +
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI 70
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 27.1 bits (61), Expect = 6.1
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 200 PKGILLYGPPGCGK 213
P + + G PG GK
Sbjct: 6 PNVVFVLGGPGSGK 19
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 27.4 bits (62), Expect = 6.3
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 207 GPPGCGKTMIAKATAKEANVSFINLD 232
GP GK+ +A+ A + L
Sbjct: 9 GPSASGKSSVARRVAAA--LGVPYLS 32
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 27.8 bits (62), Expect = 6.4
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKL------YGESPKLATAIFSLAE 256
L +G GC A AK V + T + G + A+ ++ E
Sbjct: 36 PLFHGSQGCT------AFAKVFFVRHFREPVPLQTTAMDQVSSVMGADENVVEALKTICE 89
Query: 257 KIQPCIIFI 265
+ P +I +
Sbjct: 90 RQNPSVIGL 98
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 26.8 bits (60), Expect = 7.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 197 LKPPKGILLYGPPGCGKTMIAKATAK 222
+ + L G G GKT + + +
Sbjct: 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 27.1 bits (61), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 200 PKGILLYGPPGCGK 213
P + + G PG GK
Sbjct: 3 PLVVFVLGGPGAGK 16
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 27.2 bits (61), Expect = 7.7
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKA 219
H + ++LK G++ ++L P GCGKT +A
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMLKSVGVI-----LVLSSPSGCGKTTVANK 46
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 26.5 bits (59), Expect = 7.9
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 203 ILLYGPPGCGKTMIAKATAKEA 224
I ++G G GK+ + +A +A
Sbjct: 39 IYVWGEEGAGKSHLLQAWVAQA 60
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 27.4 bits (61), Expect = 8.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 205 LYGPPGCGKTMIAKATAKEANVSFI 229
+ GP G GK++ ++ AK +N +
Sbjct: 226 IPGPFGSGKSVTQQSLAKWSNADVV 250
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 26.8 bits (60), Expect = 9.1
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 200 PKGILLYGPPGCGK 213
I + G PG GK
Sbjct: 15 VSVIFVLGGPGAGK 28
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 26.6 bits (58), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ + L GPPG GKT + ++ S + +D
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 26.9 bits (60), Expect = 9.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 203 ILLYGPPGCGK 213
IL++GP G GK
Sbjct: 3 ILIFGPNGSGK 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.8 bits (60), Expect = 9.8
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 198 KPPKGILLYGPPGCGK 213
P K ++ G P GK
Sbjct: 4 DPLKVMIS-GAPASGK 18
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 26.8 bits (59), Expect = 9.8
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 188 RNLLKESGLLKPPKGILLY-GPPGCGKTMIAKATAKEA 224
R + ++ K +++ G G GKT ++ AT
Sbjct: 13 RGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYL 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,041,161
Number of extensions: 295820
Number of successful extensions: 974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 194
Length of query: 341
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,077,219
Effective search space: 1007073093
Effective search space used: 1007073093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)