RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15087
(341 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 198 bits (505), Expect = 9e-63
Identities = 64/186 (34%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGK 213
++ ++I ++ ++AG + K+E+ + V + ++ + ++ G K PKG+L+ GPPG GK
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGK 58
Query: 214 TMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLR 273
T++AKA A EA V F + S + G +F A+K PCIIFIDEID++ R
Sbjct: 59 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118
Query: 274 SRSS---SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKK 328
R + H+ Q + L + DG ++ II++ ATNRPD +DPA+ R R ++
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQ 176
Query: 329 YHIKLP 334
+ LP
Sbjct: 177 VVVGLP 182
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 193 bits (491), Expect = 8e-61
Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT +A+A A
Sbjct: 7 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAG 64
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS---SD 279
EA V FI S + G +F A++ PCI+FIDEID++ R R S
Sbjct: 65 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 124
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ Q + L + DG D I++M ATNRPD +DPA+ R R ++ I P
Sbjct: 125 NDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAP 179
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 161 bits (407), Expect = 3e-48
Identities = 70/176 (39%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++I GLE +K+EL + V +P+++ + + G+ P KG+L YGPPGCGKT++AKA A
Sbjct: 5 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIAN 63
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRS---SSD 279
E +FI++ L +GES IF A + PC++F DE+DS+ ++R
Sbjct: 64 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 123
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPL 335
A ++ + L++ DG++T KN + I+GATNRPD IDPAI R I +PL
Sbjct: 124 GGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPL 177
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 135 bits (340), Expect = 2e-38
Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ ++ G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 60
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E F ++ + KL GES F AEK P IIFIDE+D++ R + E
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 120
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 121 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIP 172
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 120 bits (301), Expect = 4e-32
Identities = 28/253 (11%), Positives = 72/253 (28%), Gaps = 20/253 (7%)
Query: 86 ELFVDRTTNKLMATHQDTNHVQCYFSDPSGTSTFNVLLAI-----TTAYEKLKKVGLDVG 140
L+ ++ KL A H T VL ++ A +
Sbjct: 3 HLYDAKSFAKLRAAQYAAFHTD--APGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFD 60
Query: 141 NKLN--THELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRN-LLKESGLL 197
+ + ++ ++ + + + + ++ E G
Sbjct: 61 KNAQRIVAYKEKSVK-AEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGH 119
Query: 198 KPPKGILL-YGPPGCGKTMIAKATAKEAN--VSFINLDISTLTDKLYGESPKLATAIFSL 254
+ G+++ G GKT + A + + + + I
Sbjct: 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARA 179
Query: 255 AEKIQPCIIFIDEIDSLLRSR-SSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNR 313
Q +I ID + +++ + ++ ++ LS + + +++ + N
Sbjct: 180 ML--QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRG--CVVIASLN- 234
Query: 314 PDDIDPAIARRMP 326
P D I +
Sbjct: 235 PTSNDDKIVELVK 247
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 88.8 bits (219), Expect = 4e-21
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 11/170 (6%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230
+ + + L+ + K S P +LL GPP GKT +A A+E+N FI
Sbjct: 16 DPVTRVLDDGELL----VQQTKNSDR-TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 70
Query: 231 LDISTLTDKLYGESPKLAT-AIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSI 289
+ + A IF A K Q + +D+I+ LL + L+++
Sbjct: 71 ICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQAL 130
Query: 290 FLSKWDGLTTDKNIDIIIMGATNRPDDIDPA-IARRMPKKYHIKLPLLSS 338
+II G T+R D + + I +P +++
Sbjct: 131 L-VLLKKAPPQGRKLLII-GTTSRKDVLQEMEMLNAFST--TIHVPNIAT 176
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 88.0 bits (217), Expect = 2e-20
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224
++I G K+ + ++ + L + PK IL+ GP G GKT IA+ AK A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 225 NVSFINLDISTLTDKLYG--ESPKLATAIFSLAEK-----IQPCIIFIDEIDSLLRSR-S 276
N FI ++ + T+ Y E + + A Q I+FIDEID + +
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY 133
Query: 277 SSDHEATAQLKSIFLSKWDGLTTD--------KNIDIIIMGA--TNRPDDIDPAIARRMP 326
S + ++ L +G T +I I GA RP D+ P + R+P
Sbjct: 134 SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP 193
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 83.5 bits (205), Expect = 4e-19
Identities = 23/178 (12%), Positives = 44/178 (24%), Gaps = 20/178 (11%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230
+ + LN ++ L++ ++ P LL G PG GKT + A +E + I
Sbjct: 9 KQFENRLNDNL------EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Query: 231 LDISTLTDKL---YGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLK 287
+D T + + + + +
Sbjct: 63 IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD 122
Query: 288 SI-----FLSKWDGLTT----DKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
L T +G R + + R K +
Sbjct: 123 VPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIV 180
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 70.8 bits (172), Expect = 9e-15
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 19/172 (11%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ G E +K++L + + +P + +LL+GPPG GKT +A A
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARK---------EPLEHLLLFGPPGLGKTTLAHVIAH 57
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E V+ + + + I+FIDEI L R + A
Sbjct: 58 ELGVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPA 110
Query: 283 -TAQLKSIFLSKWDGLTT--DKNIDIIIMGATNRPDDIDPAIARRMPKKYHI 331
+ I + + T + ++GAT RP I + R H+
Sbjct: 111 MEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 162
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 71.6 bits (175), Expect = 1e-14
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 13/127 (10%)
Query: 157 PEEINGSWKNIAGLEHIKKEL-NQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTM 215
W + + L + + ++ + L GP GKT
Sbjct: 115 GSADIEEWMAG--VAWLHCLLPKMDSVVYDFLKCMVYNI---PKKRYWLFKGPIDSGKTT 169
Query: 216 IAKATAKEANVSFINLDISTLTDK-LYGESPKLATAIFSLAE------KIQPCIIFIDEI 268
+A A + +N+++ G + +F + + P I+ +
Sbjct: 170 LAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNL 229
Query: 269 DSLLRSR 275
D+L
Sbjct: 230 DNLRDYL 236
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 60.6 bits (145), Expect = 4e-11
Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 16/167 (9%)
Query: 170 LEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE----AN 225
L H +++L Q I N L+ G L G PG GKT+ + +
Sbjct: 18 LPHREQQLQQLDILL---GNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
Query: 226 VSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQ 285
F+ ++ + + + F+ + LR R
Sbjct: 73 ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 132
Query: 286 LKSIFLSKWDG-------LTTDKNIDIIIMGATNRPDDIDPAIARRM 325
++ I ++ + ++
Sbjct: 133 AFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTR 179
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 59.4 bits (143), Expect = 2e-10
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224
++I G K+ + ++ + L + PK IL+ GP G GKT IA+ AK A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 225 NVSFINLDISTLTDKLYGES 244
N FI ++ + T+ Y
Sbjct: 74 NAPFIKVEATKFTEVGYVGK 93
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 58.1 bits (139), Expect = 2e-10
Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 20/175 (11%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
S G E++KK+L+ ++ + +LL GPPG GKT +A A
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRG---------EVLDHVLLAGPPGLGKTTLAHIIAS 57
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E + T AI L + ++FIDEI L ++ + A
Sbjct: 58 ELQTNIHV------TSGPVLVKQGDMAAI--LTSLERGDVLFIDEIHRLNKAVEELLYSA 109
Query: 283 TAQLKSIFLSKWDGLTTDKNID---IIIMGATNRPDDIDPAIARRMPKKYHIKLP 334
+ + ID ++GAT R + + R +
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFY 164
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 48.6 bits (114), Expect = 3e-07
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIF---PMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKA 219
+ + + G + +L + KN + +LYGPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 220 TAKEAN 225
A+E
Sbjct: 72 VAQELG 77
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 46.4 bits (109), Expect = 3e-06
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY------GESPKLATAIF 252
ILL GP G GKT++A+ AK ++ D ++LT+ Y +L A
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 253 SLAEKIQPCIIFIDEID 269
+K Q I+FIDEID
Sbjct: 127 WNVQKAQKGIVFIDEID 143
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 45.9 bits (107), Expect = 3e-06
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 10/147 (6%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFS----LAEKI 258
L+ G GK+ I K E N+ +I LD+ ++ Y + L +++
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 259 QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLS------KWDGLTTDKNIDIIIMGATN 312
+ + I ++ + + + F + + +D
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 151
Query: 313 RPDDIDPAIARRMPKKYHIKLPLLSSF 339
R ++ PA+A IK + S
Sbjct: 152 RGVNLLPALAYAYDNLKRIKFIMSGSE 178
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 45.9 bits (107), Expect = 3e-06
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 33/194 (17%)
Query: 165 KNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224
+ + L + + LL +GL G G GKT +AK T K
Sbjct: 16 PELRVRRGEAEALARIYL-----NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 70
Query: 225 NVSFINLDISTLTDKLYGESPKLATAIFSL---------------------------AEK 257
+ + ++ + + I SL +
Sbjct: 71 SEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE 130
Query: 258 IQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDI 317
++ +DE S+L S + E L + ++ +++ +
Sbjct: 131 NHYLLVILDEFQSMLSSPRIAA-EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYM 189
Query: 318 DPAIARRMPKKYHI 331
I + +
Sbjct: 190 REKIPQVESQIGFK 203
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 43.0 bits (100), Expect = 1e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236
+LL G PG GK+ IA+A A V ++ L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 41.2 bits (95), Expect = 5e-05
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYG 242
+ I+L G GK+ I + ++ + +L + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 40.9 bits (95), Expect = 1e-04
Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 50/194 (25%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++ ++ G EH+ L + G + L G G GKT IA+ AK
Sbjct: 10 TFADVVGQEHVLTALANGL-----------SLG--RIHHAYLFSGTRGVGKTSIARLLAK 56
Query: 223 EANV-------------SFINLDISTLTDKLYGESPKLATA--IFSLAEKIQ-------P 260
N + ++ D + ++ L + +Q
Sbjct: 57 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 116
Query: 261 CIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPA 320
+ IDE+ L S H A LK++ + + + AT P +
Sbjct: 117 KVYLIDEVHML------SRHSFNALLKTL---------EEPPEHVKFLLATTDPQKLPVT 161
Query: 321 IARRMPKKYHIKLP 334
I R + + L
Sbjct: 162 ILSRCLQFHLKALD 175
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 40.8 bits (95), Expect = 1e-04
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 27/148 (18%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAK---EANVSFINLDISTLT---------DKLYGESP 245
+ LL G G GKT IA+ A + +V + D + + K G+
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 246 KLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDI 305
K A+ E+ I+FIDEI +++ + ++S + A + L + I +
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA------ANLIKPLLSSGKIRV 150
Query: 306 IIMGATNRPDDI------DPAIARRMPK 327
I + + D A+ARR K
Sbjct: 151 I---GSTTYQEFSNIFEKDRALARRFQK 175
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 39.9 bits (93), Expect = 2e-04
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 203 ILLYGPPGCGKTMIAKA--------TAKEANVSFINLDISTLTDKLYGESPKLATAIFS- 253
+L+ G G GK ++A+ ++ ++ +L+G T S
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 254 ---LAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKW---DGLTTDKNIDIII 307
E +F+DEI L EA A+L + S G + +++ I
Sbjct: 86 KEGFFELADGGTLFLDEIGEL-------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRI 138
Query: 308 MGATNRP 314
+ ATNR
Sbjct: 139 LAATNRN 145
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 40.3 bits (93), Expect = 2e-04
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 167 IAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATA 221
I G E +K L + + P G+L++G G GK+ +A A
Sbjct: 9 IVGQEDMKLALLLTAVDPG--------------IGGVLVFGDRGTGKSTAVRALA 49
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 38.7 bits (89), Expect = 3e-04
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
K I+ G G GK+ +A+A AK+ ++ F++ D
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 38.6 bits (88), Expect = 6e-04
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 15/168 (8%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
S ++ E + L + R+ +LLYGP G GK A +
Sbjct: 9 SLNALSHNEELTNFLKSLSD---QPRD----------LPHLLLYGPNGTGKKTRCMALLE 55
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
+ + + + KL + S ++ + D ++ +
Sbjct: 56 SIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 115
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYH 330
Q+ F DGL II + D +
Sbjct: 116 MEQVD--FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 161
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 37.6 bits (86), Expect = 7e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINL 231
ILL G PG GKT + K A ++ + +IN+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 37.7 bits (86), Expect = 7e-04
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 198 KPPKG--ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ PKG IL+ G PG GKT +A+ A E +
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 37
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 37.5 bits (86), Expect = 8e-04
Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 28/158 (17%)
Query: 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSL---- 254
P+ ++ G PG GK+ + A +N D + +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDN 72
Query: 255 ----------------AEKIQPCIIFIDEIDSLLRSR-------SSSDHEATAQLKSIFL 291
+ R S + + +
Sbjct: 73 TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYR 132
Query: 292 SKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKY 329
+++ T + I+ + +DPA+ +R+ +++
Sbjct: 133 KQFEPPTLAEGFLEILEIPFRLQEHLDPAL-QRLYRQF 169
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 37.6 bits (86), Expect = 9e-04
Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 19/160 (11%)
Query: 200 PKG--ILLYGPPGCGKTMIAKATAKEANVSFINLD------ISTLTDKLYGESPKLATAI 251
PKG +L GPPG GK A AK V + +++ ++ +
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK 60
Query: 252 FSLAEKI----QPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIII 307
E + + + + L L + + + L + I
Sbjct: 61 LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 120
Query: 308 MGATNR-------PDDIDPAIARRMPKKYHIKLPLLSSFS 340
R DD A+ R+ + PL+ +S
Sbjct: 121 SLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYS 160
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233
+ I L GP G GK+ I + A++ N+ F + D
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 35
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 37.2 bits (85), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSFIN 230
LK K I + G PG GK + ++ + ++
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 38
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 36.9 bits (84), Expect = 0.001
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ I + G GCG T + + A+ F++ D
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 36.9 bits (84), Expect = 0.001
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQP 260
+ + L GPPG GKT + ++ S + +D T+++ ++ + +L+ P
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG-FYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 261 CI-IFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLT 298
+ ++ R + + L
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNAD 99
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 36.9 bits (84), Expect = 0.002
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
P + + G PG GK ++ ++
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 35.8 bits (81), Expect = 0.003
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDI 233
+L G G GK+ +A A + + +F++ D
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDF 39
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.7 bits (81), Expect = 0.003
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+L G PG GK+ I + AK V ++ D
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 35.8 bits (81), Expect = 0.004
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGE 243
K + + G GK+++ A N + + G
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG 50
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 35.7 bits (81), Expect = 0.004
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
++L GPPG GK A + + + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATG 34
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 35.5 bits (80), Expect = 0.004
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 198 KPPKG--ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTD 238
+ +G I L G GK IA+A N L D
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 44
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 35.4 bits (80), Expect = 0.004
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESP 245
++ GP G GK+ K A + + S ++ + + G
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVGGYR 46
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 35.2 bits (80), Expect = 0.005
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFI 229
P +++ G P GK + + ++ I
Sbjct: 2 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 32
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 34.8 bits (79), Expect = 0.007
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ G PG GK ++ K + ++
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSSG 38
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 34.9 bits (79), Expect = 0.008
Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 34/173 (19%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+I G EHI K L V K ++ +L GPPG GKT A A A+
Sbjct: 22 RLDDIVGQEHIVKRLKHYV----KTGSM----------PHLLFAGPPGVGKTTAALALAR 67
Query: 223 EA-----NVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSS 277
E +F+ L+ S A IIF+DE D+L +
Sbjct: 68 ELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ- 126
Query: 278 SDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYH 330
A +++ + + ++ + + N I I R
Sbjct: 127 -----QALRRTMEM---------FSSNVRFILSCNYSSKIIEPIQSRCAIFRF 165
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 34.7 bits (78), Expect = 0.009
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKE 223
+ +L+ PG G + A ++
Sbjct: 22 RGHHALLIQALPGMGDDALIYALSRY 47
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 34.2 bits (77), Expect = 0.011
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFIN 230
P + + G PG GK ++ + ++
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 31
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 34.1 bits (77), Expect = 0.011
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
++L G PG GK A+ + I+
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTG 32
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.1 bits (77), Expect = 0.012
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG GK A A++ + I L + E KL +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI--STGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 263 IFI 265
+
Sbjct: 61 SDL 63
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 33.7 bits (76), Expect = 0.016
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
I+L G P GK A+ ++ + I+
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTG 32
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 33.8 bits (76), Expect = 0.018
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFIN 230
I + G PG GK + K+ + ++
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLS 38
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 33.5 bits (75), Expect = 0.020
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDI 233
+ L G G GKT ++ A + I
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 52
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 33.3 bits (76), Expect = 0.023
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPK--GILLYGPPGCGKTM 215
+ G W+ I ++ + + + F ++ LK PK ++ GP GK+
Sbjct: 16 IDEGGDWRPIVQF--LRYQQIEFITFLGALKSFLK-----GTPKKNCLVFCGPANTGKSY 68
Query: 216 IAKATAK 222
+
Sbjct: 69 FGMSFIH 75
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.8 bits (73), Expect = 0.023
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGE 243
K IL G PG GK+ A+ + N F N++ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAK-NPGFYNINRDDYRQSIMAH 44
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 33.5 bits (75), Expect = 0.024
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ + +H L +++ K+ NL +L YGPPG GKT A K
Sbjct: 10 NLDEVTAQDHAVTVLKKTL----KSANL----------PHMLFYGPPGTGKTSTILALTK 55
Query: 223 EAN 225
E
Sbjct: 56 ELY 58
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 33.9 bits (77), Expect = 0.024
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 28/141 (19%)
Query: 203 ILLYGPPGCGKTMIAKATAKE----------ANVSFINLDISTLTDKLYGESPKLATAIF 252
+L G PG GKT I + A+ ++L + +L + +
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG-EFEERLK 104
Query: 253 SLAEKIQPC----IIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWD----GLTTDKNID 304
++ +++ I+FIDE+ +++ + + + L++ + G TT
Sbjct: 105 AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYR 164
Query: 305 IIIMGATNRPDDIDPAIARRM 325
I DPA+ RR
Sbjct: 165 EIEK---------DPALERRF 176
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.9 bits (74), Expect = 0.028
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFI 229
I+L G PG GK A ++ I
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHI 29
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 32.3 bits (72), Expect = 0.056
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFIN 230
I + GP G GK + KA A+ ++
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLLD 33
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 31.6 bits (71), Expect = 0.10
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFIN 230
IL+ G ++ +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 30.7 bits (68), Expect = 0.19
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFIN 230
I + GP GK+ +AK AK+ ++++
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDFGFTYLD 33
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.0 bits (66), Expect = 0.19
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 194 SGLLKPPKGILLYGPPGCGKTMIA 217
S +LK +L PG GKT
Sbjct: 1 SHMLKKGMTTVLDFHPGAGKTRRF 24
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.5 bits (67), Expect = 0.22
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 200 PKG--ILLYGPPGCGKTMIAKATAKEA 224
+G GKT ++ A
Sbjct: 35 ESMAITEAFGEFRTGKTQLSHTLCVTA 61
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.2 bits (67), Expect = 0.24
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQ 259
++ P G GK+ + +A K + + +S T + F ++ +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 61
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.5 bits (67), Expect = 0.26
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 200 PKG--ILLYGPPGCGKTMIAKATAKEAN 225
G L+G GK+ + A
Sbjct: 32 ETGSITELFGEFRTGKSQLCHTLAVTCQ 59
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 30.1 bits (66), Expect = 0.29
Identities = 16/140 (11%), Positives = 32/140 (22%), Gaps = 9/140 (6%)
Query: 200 PKG--ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESP-------KLATA 250
G ++G GKT I A + + E +A
Sbjct: 21 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 80
Query: 251 IFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIMGA 310
+ + + ++ +++ A L D T D G
Sbjct: 81 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGE 140
Query: 311 TNRPDDIDPAIARRMPKKYH 330
+ R + +
Sbjct: 141 LSARQMHLARFLRMLLRLAD 160
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.1 bits (66), Expect = 0.36
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 194 SGLLKPPKGILLYGPPGCGKTMIAKATAKEA 224
G L+ G G GKT I +
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.9 bits (66), Expect = 0.37
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDI 233
P I++ G P GKT I+K + N +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.0 bits (66), Expect = 0.41
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 203 ILLYGPPGCGKTMIA 217
L P G GK+M+A
Sbjct: 32 GALVSPGGAGKSMLA 46
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.4 bits (65), Expect = 0.45
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAK 222
+ I L G GK+ +A
Sbjct: 22 QRGLTIWLTGLSASGKSTLAVELEH 46
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 29.7 bits (65), Expect = 0.45
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ + G + + R + E L +L YGPPG GKT A A+
Sbjct: 12 TLDEVYGQNEVITTV----------RKFVDEGKL----PHLLFYGPPGTGKTSTIVALAR 57
Query: 223 E 223
E
Sbjct: 58 E 58
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.5 bits (65), Expect = 0.45
Identities = 21/154 (13%), Positives = 38/154 (24%), Gaps = 40/154 (25%)
Query: 200 PKG--ILLYGPPGCGKTMIA--------------------------KATAKEANVSFINL 231
K IL G G GKT++ A + F +
Sbjct: 24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM 83
Query: 232 DISTL-----TDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQL 286
+ L I S +P I ID + +L R S++
Sbjct: 84 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG 143
Query: 287 KSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPA 320
+ + + I + +++
Sbjct: 144 VTGYAKQE-------EITGLFTNTSDQFMGAHSI 170
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 0.65
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFIN 230
K +++ G PG G T ++ +N
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.9 bits (63), Expect = 0.71
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 200 PKG--ILLYGPPGCGKTMIAKATAKE 223
++G G GKT +A A
Sbjct: 34 ETQAITEVFGEFGSGKTQLAHTLAVM 59
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 0.71
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 196 LLKPPKGILLYGPPGCGKT-MIAK 218
+LK L G G GKT AK
Sbjct: 6 VLKDRNLWFLVGLQGSGKTTTAAK 29
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.8 bits (63), Expect = 0.73
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSF 228
I++ GP G GK+ + K E SF
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.8 bits (63), Expect = 0.74
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 203 ILLYGPPGCGKTMIAKATA 221
I++ G PG GKT + K
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.9 bits (64), Expect = 0.78
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 198 KPPKGILLYGPPGCGK-TMIAK 218
+PP I++ G G GK T K
Sbjct: 9 EPPFVIMVVGVNGTGKTTSCGK 30
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.8 bits (63), Expect = 0.80
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 6/92 (6%)
Query: 200 PKG--ILLYGPPGCGKTM----IAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFS 253
P G L+ G G GKT+ E + + + + + +
Sbjct: 24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK 83
Query: 254 LAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQ 285
L ++ + I+ D A +
Sbjct: 84 LVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 0.82
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGES 244
+ + G GKT +A ++ I++ + + D + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 28.8 bits (63), Expect = 0.88
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+I G + L Q K+ N+ +++ G PG GKT A
Sbjct: 13 VLSDIVGNKETIDRLQQIA----KDGNM----------PHMIISGMPGIGKTTSVHCLAH 58
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEA 282
E + L + I A+K +I L + S +
Sbjct: 59 ELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 118
Query: 283 TAQLKSIFL 291
A +++ L
Sbjct: 119 QALRRTMEL 127
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.5 bits (63), Expect = 0.99
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 198 KPPKGILLYGPPGCGK-TMIAK 218
K P IL+ G G GK T I K
Sbjct: 7 KAPFVILMVGVNGVGKTTTIGK 28
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 1.00
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 198 KPPKGILLYGPPGCGK-TMIAK 218
K P I+L G G GK T K
Sbjct: 10 KIPYVIMLVGVQGTGKATTAGK 31
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.1 bits (61), Expect = 1.1
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPK 246
K ++ G PG GK+ + + + IN I D + + K
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALK 47
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.0 bits (61), Expect = 1.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 203 ILLYGPPGCGKTMIAKATAKE 223
++L GP G GK+ + K +E
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQE 23
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.3 bits (62), Expect = 1.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 193 ESGLLKPPKGILLYGPPGCGKTMIA 217
E + + + ++ PG GKT
Sbjct: 2 EDDIFRKKRLTIMDLHPGAGKTKRY 26
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.5 bits (60), Expect = 1.4
Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 16/125 (12%)
Query: 203 ILLYGPPGCGKT-MIAKATAKEANVSFINLDISTLTDKLY-----------GESPKLATA 250
L+ P G GK+ + A A + + T + T
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI 70
Query: 251 IFSLAEKIQPCIIFIDEIDSLLRSRS----SSDHEATAQLKSIFLSKWDGLTTDKNIDII 306
F+ + + H A + D T ++
Sbjct: 71 TTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVV 130
Query: 307 IMGAT 311
+ AT
Sbjct: 131 LATAT 135
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 28.0 bits (61), Expect = 1.4
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 7/118 (5%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATA-----KEANVSFINLDISTLTDKLYGESPKLATA 250
L P + G G GKT I+ ATA + V ++ D ++ +++ +
Sbjct: 4 LQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFS--QTIGNT 61
Query: 251 IFSLAEKIQPCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSKWDGLTTDKNIDIIIM 308
I ++A + ID + + R+ L +S + + I
Sbjct: 62 IQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAA 119
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.9 bits (62), Expect = 1.5
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 205 LYGPPGCGKTMIAKA-----TAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQ 259
+ G G GK+ + E + +I+ + DK + L ++
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92
Query: 260 PCIIFIDEIDSLLRSRSSSDHEATAQLKSIFLSK 293
++F +L + ++ A ++ + LSK
Sbjct: 93 --MVFQH--FNLWSHMTVLENVMEAPIQVLGLSK 122
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.3 bits (60), Expect = 2.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 203 ILLYGPPGCGKTMIAKATAK 222
L+ PP GKTM+ + A+
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQ 65
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.0 bits (59), Expect = 2.5
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 198 KPPKGILLYGPPGCGKT-MIAK 218
+ +L+ G G GKT IAK
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAK 25
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.4 bits (61), Expect = 2.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 203 ILLYGPPGCGKTMIAKATAK 222
I L+G G GKT++
Sbjct: 71 IGLFGGAGVGKTVLIMELIN 90
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.8 bits (59), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD---ISTLTDKLYGESPKL 247
G+LL G G GK+ A N F+ D I L ++L+G + ++
Sbjct: 16 VGVLLTGRSGIGKSECALDLI-NKNHLFVGDDAIEIYRLGNRLFGRAQEV 64
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.1 bits (59), Expect = 3.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 203 ILLYGPPGCGKTMIAKA 219
+ L+G G GK++IA
Sbjct: 47 LFLHGRAGSGKSVIASQ 63
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.7 bits (58), Expect = 3.1
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 201 KGILLYGPPGCGKTMIAKATAKE 223
K ++L G G G+ I +
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITK 26
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.9 bits (58), Expect = 3.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 203 ILLYGPPGCGKTMIAKATAKE 223
++L GP GK+ + + +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRER 25
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.5 bits (57), Expect = 3.9
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 203 ILLYGPPGCGKTMIAKATAKE 223
+ G GKT + K
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPA 25
>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 25.5 bits (55), Expect = 4.7
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 26 YSIYKFEGFITFLYKQYSITHTRMSEVTVDSDSYLMHFGKFATTAIVSYFAVNFFFKKYQ 85
+ Y +GF F + + ++ V +++ + + V + Y+
Sbjct: 27 KADYANDGFAQFTIGSHCLMLSQNHLVPLENFQSGIII----------HIEVEDVDQNYK 76
Query: 86 ELFVDRTTNKLMATHQDTNHVQCYFSDPSG 115
L T D P+G
Sbjct: 77 RLNELGIKVLHGPTVTDWGTESLLVQGPAG 106
>d1u5tb2 a.4.5.54 (B:490-564) Vacuolar protein sorting-associated
protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 24.9 bits (54), Expect = 5.1
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 232 DISTLTDKLYGESPKLATAIFSLAEKIQPCI----IFIDE 267
D+ LT L + K + L E +Q C+ + ID+
Sbjct: 21 DLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDK 60
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.1 bits (56), Expect = 6.1
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
I + G GK+ + + + ++
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYR 34
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.1 bits (56), Expect = 7.0
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 203 ILLYGPPGCGKT----MIAKATAKEANVSFINLDIS 234
++ G G GKT + V+++NLD
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 38
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 24.6 bits (53), Expect = 7.0
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+++G GC + AK A++ + + + D K +
Sbjct: 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYV-DIRAEGITKEDLQQKAGKPVETVPQ 61
Query: 263 IFIDE 267
IF+D+
Sbjct: 62 IFVDQ 66
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.4 bits (55), Expect = 7.4
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 197 LKPPKGILLYGPPGCGKTMIAKATAKEANVSF 228
+ + L G G GKT + + +
Sbjct: 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG 61
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.9 bits (55), Expect = 8.0
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 185 MKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKA 219
+KN ++ + L+ G G GK+ + A
Sbjct: 8 VKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDA 42
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 25.7 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 203 ILLYGPPGCGKTMIAKATAK 222
I L+GP GKT IA+A A
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 25.3 bits (55), Expect = 8.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 201 KGILLYGPPGCGKTMIA 217
G+L+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 25.6 bits (56), Expect = 9.9
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 205 LYGPPGCGKTMIAKATA-----KEANVSFINLDISTLTDK 239
+ GP G GK+ + E V N+ + L D
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,739
Number of extensions: 56741
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 114
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)