BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15088
(1291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/500 (39%), Positives = 303/500 (60%), Gaps = 19/500 (3%)
Query: 767 KVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEV 826
+ +Y GP D +K C+P+ LM++ SKM PT + F RV +GT+ +GQ+V
Sbjct: 352 RAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKV 411
Query: 827 RVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITD 886
R+ G NY ++D I + R+ + R+ ++ PAGN + + GIDQ ++KT T+T
Sbjct: 412 RIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT- 470
Query: 887 LITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEH 946
T+E + + +KF+ V+++AVE N ++LPK+++GL++++KS P + T + ESGEH
Sbjct: 471 --TSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEH 528
Query: 947 VVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITM 1006
+V GTGEL+L+ + DL ++ + +K++ PVVA+ ETV SS +++PNK N+I +
Sbjct: 529 IVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYL 588
Query: 1007 IAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVD 1066
AEP+++ ++ IEN I++ + K Y WD+ AR IW FGP+ GPN+++D
Sbjct: 589 KAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVID 648
Query: 1067 DTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQ 1126
T + L +KDS+V FQW T+EGP+ E +R+V+ ILD + + +HRGGGQ
Sbjct: 649 QTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQ 704
Query: 1127 IIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSP 1186
IIPT RR Y+ FL+A P++ EP VE+Q P V +Y+VL K+RG V + PG+P
Sbjct: 705 IIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTP 764
Query: 1187 LYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPAT 1246
L+T+KA++P +SFGF +LR T GQAF VF HW + DPLD T
Sbjct: 765 LFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLD------------PT 812
Query: 1247 HLAREFMIKTRRRKGLSEDV 1266
A E ++ R+R G+ E+V
Sbjct: 813 SKAGEIVLAARKRHGMKEEV 832
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
Query: 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAF 60
+++GL++++KS P + T + ESGEH+V GTGEL+L+ + DL ++ + +K++ PVVA+
Sbjct: 504 LVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAY 563
Query: 61 CETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKY 120
ETV SS +++PNK N+I + AEP+++ ++ IEN I++ + K Y
Sbjct: 564 RETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDY 623
Query: 121 DWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 180
WD+ AR IW FGP+ GPN+++D T + L +KDS+V FQW T+EGP+ E
Sbjct: 624 GWDVTDARKIWCFGPDGNGPNLVIDQTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGE 679
Query: 181 PIRNVKFKIREGNLNS 196
+R+V+ I + L++
Sbjct: 680 EMRSVRVNILDVTLHA 695
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EVTAA+R+ DG ++ VD EGV + TE +L+ A+ E++ + +NK+DR +L
Sbjct: 106 PGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL 165
Query: 283 ELKLPPQDAYYKIKHIIDEIN 303
EL++ +D Y ++ +N
Sbjct: 166 ELQVSKEDLYQTFARTVESVN 186
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 13/106 (12%)
Query: 385 YNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLF 444
+ ++ + +MD +RN++++ H+ HGK+T+ D L+++ G A+ R+TDT
Sbjct: 4 FTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRA--GIISAAKAGEARFTDTRK 61
Query: 445 TEQERGVSIKASPVTLLL----PDVK-------GKNYLMNIFDTPA 479
EQERG++IK++ ++L DVK G ++L+N+ D+P
Sbjct: 62 DEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPG 107
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 510 RKFSKKAAHASA---QRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKI 566
+K++ K A +R+F F+L+P+++L ++ +P +L++L I + +E +
Sbjct: 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDL 314
Query: 567 NIRPLLRLVYKVEVNRVPAGNWVL 590
+ LL++V + +PA + +L
Sbjct: 315 EGKALLKVVMR---KFLPAADALL 335
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 580 VNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLI 620
++ PAGN + + GIDQ ++KT T+T T ++ KF +
Sbjct: 445 IDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSV 485
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With Catalytic
Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With Catalytic
Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With Catalytic
Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/500 (39%), Positives = 302/500 (60%), Gaps = 19/500 (3%)
Query: 767 KVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEV 826
+ +Y GP D +K C+P+ LM++ SKM PT + F RV +GT+ +GQ+V
Sbjct: 352 RAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKV 411
Query: 827 RVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITD 886
R+ G NY ++D I + R+ + R+ ++ PAGN + + GIDQ ++KT T+T
Sbjct: 412 RIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT- 470
Query: 887 LITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEH 946
T+E + + +KF+ V+++AVE N ++LPK+++GL++++KS P + T + ESGEH
Sbjct: 471 --TSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEH 528
Query: 947 VVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITM 1006
+V GTGEL+L+ + DL ++ + +K++ PVVA+ ETV SS +++PNK N+I +
Sbjct: 529 IVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYL 588
Query: 1007 IAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVD 1066
AEP+++ ++ IEN I++ + K Y WD+ AR IW FGP+ GPN+++D
Sbjct: 589 KAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVID 648
Query: 1067 DTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQ 1126
T + L +KDS+V FQW T+EGP+ E +R+V+ ILD + + + RGGGQ
Sbjct: 649 QTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIXRGGGQ 704
Query: 1127 IIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSP 1186
IIPT RR Y+ FL+A P++ EP VE+Q P V +Y+VL K+RG V + PG+P
Sbjct: 705 IIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTP 764
Query: 1187 LYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPAT 1246
L+T+KA++P +SFGF +LR T GQAF VF HW + DPLD T
Sbjct: 765 LFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLD------------PT 812
Query: 1247 HLAREFMIKTRRRKGLSEDV 1266
A E ++ R+R G+ E+V
Sbjct: 813 SKAGEIVLAARKRHGMKEEV 832
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
Query: 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAF 60
+++GL++++KS P + T + ESGEH+V GTGEL+L+ + DL ++ + +K++ PVVA+
Sbjct: 504 LVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAY 563
Query: 61 CETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKY 120
ETV SS +++PNK N+I + AEP+++ ++ IEN I++ + K Y
Sbjct: 564 RETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDY 623
Query: 121 DWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 180
WD+ AR IW FGP+ GPN+++D T + L +KDS+V FQW T+EGP+ E
Sbjct: 624 GWDVTDARKIWCFGPDGNGPNLVIDQTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGE 679
Query: 181 PIRNVKFKIREGNLNS 196
+R+V+ I + L++
Sbjct: 680 EMRSVRVNILDVTLHA 695
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EVTAA+R+ DG ++ VD EGV + TE +L+ A+ E++ + +NK+DR +L
Sbjct: 106 PGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL 165
Query: 283 ELKLPPQDAYYKIKHIIDEIN 303
EL++ +D Y ++ +N
Sbjct: 166 ELQVSKEDLYQTFARTVESVN 186
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 13/106 (12%)
Query: 385 YNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLF 444
+ ++ + +MD +RN++++ H+ HGK+T+ D L+++ G A+ R+TDT
Sbjct: 4 FTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRA--GIISAAKAGEARFTDTRK 61
Query: 445 TEQERGVSIKASPVTLLL----PDVK-------GKNYLMNIFDTPA 479
EQERG++IK++ ++L DVK G ++L+N+ D+P
Sbjct: 62 DEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPG 107
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 510 RKFSKKAAHASA---QRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKI 566
+K++ K A +R+F F+L+P+++L ++ +P +L++L I + +E +
Sbjct: 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDL 314
Query: 567 NIRPLLRLVYKVEVNRVPAGNWVL 590
+ LL++V + +PA + +L
Sbjct: 315 EGKALLKVVMR---KFLPAADALL 335
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 580 VNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLI 620
++ PAGN + + GIDQ ++KT T+T T ++ KF +
Sbjct: 445 IDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSV 485
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNE 675
NKFLIDGFPRNQ+NL GWNK M K ++ +VLFFDC ++C+ RCL+RG + SGR+DDN
Sbjct: 87 NKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERG-KSSGRSDDNR 145
Query: 676 ESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714
ESL+KRI Y T PII +E VK+ +A KS+ E+
Sbjct: 146 ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEV 184
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant
Mutant T84a
Length = 691
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDA--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI D P
Sbjct: 72 CFW-----KDHRINIIDAPG 86
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With
Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In The
Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G, Gdp
And Fusidic Acid
Length = 691
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ T PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDT--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI DTP
Sbjct: 72 CFW-----KDHRINIIDTPG 86
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDA--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI D P
Sbjct: 72 CFW-----KDHRINIIDAPG 86
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant
Mutant G16v
Length = 691
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ T PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDT--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI DTP
Sbjct: 72 CFW-----KDHRINIIDTPG 86
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ T PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDT--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI DTP
Sbjct: 72 CFW-----KDHRINIIDTPG 86
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ T PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDT--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI DTP
Sbjct: 72 CFW-----KDHRINIIDTPG 86
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By Tmrna-Smpb
And Ef-G During Translocation And Mld-Loading (30s
Subunit)
Length = 691
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ + I D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGLKETITG-----DTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ T PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDT--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI DTP
Sbjct: 72 CFW-----KDHRINIIDTPG 86
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 256 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 308
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ K + D + ED
Sbjct: 309 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGL-----KETITGDTLVGED 360
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P E+G+ ++
Sbjct: 361 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIIS 419
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL+L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 420 GMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 456
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 457 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 501
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 502 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAG 553
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 554 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 607
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 608 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 655
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ T PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 39 CFWKDHRINIIDT--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 90
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 91 QAEKYKVPRIAFANKMDKTGADLWL 115
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 412 ETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 470
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 471 RGQYGHVKIKVEPLPRGSGFEFVNAIV 497
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 195/470 (41%), Gaps = 88/470 (18%)
Query: 784 MKACNPEGRLM-VHSSKMYPTEECTFFQVLA----------RVMSGTLHAGQEVRVLGEN 832
+K PEG ++ +H P F +++A RV SGTL +G V
Sbjct: 289 IKGTTPEGEVVEIHPDPNGPLAALAF-KIMADPYVGRLTFIRVYSGTLTSGSYV------ 341
Query: 833 YSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNED 892
Y+ R V RL A ++ EV + AG+ + G+ + I D + ED
Sbjct: 342 YNTTKGRKER---VARLLRMHANHREEVEELKAGDLGAVVGLKETITG-----DTLVGED 393
Query: 893 M--YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVL 949
I ++ + VI +A+EP ++ K+ L ++ + P + E+G ++
Sbjct: 394 APRVILESIEV-PEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIIS 452
Query: 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAE 1009
G GEL L+ ++ L++ + ++D V P VA+ ET I +
Sbjct: 453 GMGELSLEIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITK 489
Query: 1010 PLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTL 1069
P+ D+E + + + G++ K + L S + F N +V +
Sbjct: 490 PV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVI 534
Query: 1070 PSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDA----VIATEPLHRGGG 1125
P E ++ +G + + GPL P+ ++K + D V ++E + G
Sbjct: 535 PKEYIP--------AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 586
Query: 1126 QIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185
+ A P ++EP + VEV P + + V L RRG + P +
Sbjct: 587 SM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640
Query: 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
+ I+AF+P + FG+ TDLR+ TQG+ + F H+Q VP +K I
Sbjct: 641 QV--IRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
C K H I+ PGHV+F+ EV +MR+ DG ++ D+++GV +E + +
Sbjct: 72 CFWKDHRINIIDA--------PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123
Query: 262 HAVQEKMAITLCVNKIDRLMLELKL 286
A + K+ NK+D+ +L L
Sbjct: 124 QAEKYKVPRIAFANKMDKTGADLWL 148
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI D P
Sbjct: 72 CFW-----KDHRINIIDAPG 86
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 21 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC-FAETPNK 79
E+G ++ G GEL L+ ++ L++ + ++D V P VA+ ET+ + ++ F
Sbjct: 445 ETGSTIISGMGELSLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGG 503
Query: 80 RNK---ITMIAEPLEKGLAEDIENQIV 103
R + + + EPL +G + N IV
Sbjct: 504 RGQYGHVKIKVEPLPRGSGFEFVNAIV 530
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
Query: 610 NEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSG 669
N +KFLIDGFPR + + +++ VE ++LFFDCPED+ + R L+RG + SG
Sbjct: 91 NVKANKHKFLIDGFPRKMDQAISFERDI---VESKFILFFDCPEDIMLERLLERG-KTSG 146
Query: 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711
R+DDN ES+KKR + + +MP+I++FE K+ V R ++S+
Sbjct: 147 RSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSV 188
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 185/435 (42%), Gaps = 95/435 (21%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SGT+ +G V+ + + VGRL A + E++ V +G
Sbjct: 326 TFF----RVYSGTMTSGSYVK---------NSTKGKRERVGRLLQMHANSRQEIDTVYSG 372
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGL 926
+ G+ T T L ++ I ++F + VI ++VEP + ++ KM L
Sbjct: 373 DIAAAVGLKD----TGTGDTLCGEKNDIILESMEF-PEPVIHLSVEPKSKADQDKMTQAL 427
Query: 927 RKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 985
K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V++ ET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRET- 485
Query: 986 VETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDL 1045
K A+ K ++ + +G D VHI + G F+ +
Sbjct: 486 -----FKSSAQVQGKFSR-----QSGGRGQYGD-----VHIEFTPNETGAGFEFE----- 525
Query: 1046 LAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101
N +V +P E V+ GL ++++ ++ G+
Sbjct: 526 ----------------NAIVGGVVPREYIPSVEAGLKDAMENGVLAGY------------ 557
Query: 1102 PIRNVKFKILDA----VIATEPLHRGGGQIIPTARRVAYSAFLMAT-----PRLMEPYLF 1152
P+ +VK K+ D V ++E A ++A S L P ++EP +
Sbjct: 558 PLIDVKAKLYDGSYHDVDSSE-----------MAFKIAASLALKEAAKKCDPVILEPMMK 606
Query: 1153 VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 1212
V ++ P + + + + RRG V D P + A++P + FG+ T LR++TQG
Sbjct: 607 VTIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Query: 1213 QAFCLSVFHHWQIVP 1227
+ F H+ VP
Sbjct: 665 RGTYTMYFDHYAEVP 679
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGHV+ + EV ++R+ DG V +DA GV TE + + A + + VNK+D+L
Sbjct: 83 PGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVA 59
M L K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V+
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVS 481
Query: 60 FCETVVETSSLKC-FAETPNKRNK---ITMIAEPLEKGLAEDIENQIV 103
+ ET ++ ++ F+ R + + + P E G + EN IV
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIV 529
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G
Length = 693
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 185/435 (42%), Gaps = 95/435 (21%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SGT+ +G V+ + + VGRL A + E++ V +G
Sbjct: 326 TFF----RVYSGTMTSGSYVK---------NSTKGKRERVGRLLQMHANSRQEIDTVYSG 372
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGL 926
+ G+ T T L ++ I ++F + VI ++VEP + ++ KM L
Sbjct: 373 DIAAAVGLKD----TGTGDTLCGEKNDIILESMEF-PEPVIHLSVEPKSKADQDKMTQAL 427
Query: 927 RKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 985
K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V++ ET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRET- 485
Query: 986 VETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDL 1045
K A+ K ++ + +G D VHI + G F+ +
Sbjct: 486 -----FKSSAQVQGKFSR-----QSGGRGQYGD-----VHIEFTPNETGAGFEFE----- 525
Query: 1046 LAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101
N +V +P E V+ GL ++++ ++ G+
Sbjct: 526 ----------------NAIVGGVVPREYIPSVEAGLKDAMENGVLAGY------------ 557
Query: 1102 PIRNVKFKILDA----VIATEPLHRGGGQIIPTARRVAYSAFLMAT-----PRLMEPYLF 1152
P+ +VK K+ D V ++E A ++A S L P ++EP +
Sbjct: 558 PLIDVKAKLYDGSYHDVDSSE-----------MAFKIAASLALKEAAKKCDPVILEPMMK 606
Query: 1153 VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 1212
V ++ P + + + + RRG V D P + A++P + FG+ T LR++TQG
Sbjct: 607 VTIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Query: 1213 QAFCLSVFHHWQIVP 1227
+ F H+ VP
Sbjct: 665 RGTYTMYFDHYAEVP 679
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGHV+F+ EV ++R+ DG V +DA GV TE + + A + + VNK+D+L
Sbjct: 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVA 59
M L K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V+
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVS 481
Query: 60 FCETVVETSSLKC-FAETPNKRNK---ITMIAEPLEKGLAEDIENQIV 103
+ ET ++ ++ F+ R + + + P E G + EN IV
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIV 529
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With Mutations M16i And F88l
Length = 693
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 185/435 (42%), Gaps = 95/435 (21%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SGT+ +G V+ + + VGRL A + E++ V +G
Sbjct: 326 TFF----RVYSGTMTSGSYVK---------NSTKGKRERVGRLLQMHANSRQEIDTVYSG 372
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGL 926
+ G+ T T L ++ I ++F + VI ++VEP + ++ KM L
Sbjct: 373 DIAAAVGLKD----TGTGDTLCGEKNDIILESMEF-PEPVIHLSVEPKSKADQDKMTQAL 427
Query: 927 RKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 985
K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V++ ET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRET- 485
Query: 986 VETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDL 1045
K A+ K ++ + +G D VHI + G F+ +
Sbjct: 486 -----FKSSAQVQGKFSR-----QSGGRGQYGD-----VHIEFTPNETGAGFEFE----- 525
Query: 1046 LAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101
N +V +P E V+ GL ++++ ++ G+
Sbjct: 526 ----------------NAIVGGVVPREYIPSVEAGLKDAMENGVLAGY------------ 557
Query: 1102 PIRNVKFKILDA----VIATEPLHRGGGQIIPTARRVAYSAFLMAT-----PRLMEPYLF 1152
P+ +VK K+ D V ++E A ++A S L P ++EP +
Sbjct: 558 PLIDVKAKLYDGSYHDVDSSE-----------MAFKIAASLALKEAAKKCDPVILEPMMK 606
Query: 1153 VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 1212
V ++ P + + + + RRG V D P + A++P + FG+ T LR++TQG
Sbjct: 607 VTIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Query: 1213 QAFCLSVFHHWQIVP 1227
+ F H+ VP
Sbjct: 665 RGTYTMYFDHYAEVP 679
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGHV+ + EV ++R+ DG V +DA GV TE + + A + + VNK+D+L
Sbjct: 83 PGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVA 59
M L K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V+
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVS 481
Query: 60 FCETVVETSSLKC-FAETPNKRNK---ITMIAEPLEKGLAEDIENQIV 103
+ ET ++ ++ F+ R + + + P E G + EN IV
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIV 529
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From
Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From
Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 185/435 (42%), Gaps = 95/435 (21%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SGT+ +G V+ + + VGRL A + E++ V +G
Sbjct: 326 TFF----RVYSGTMTSGSYVK---------NSTKGKRERVGRLLQMHANSRQEIDTVYSG 372
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGL 926
+ G+ T T L ++ I ++F + VI ++VEP + ++ KM L
Sbjct: 373 DIAAAVGLKD----TGTGDTLCGEKNDIILESMEF-PEPVIHLSVEPKSKADQDKMTQAL 427
Query: 927 RKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 985
K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V++ ET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRET- 485
Query: 986 VETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDL 1045
K A+ K ++ + +G D VHI + G F+ +
Sbjct: 486 -----FKSSAQVQGKFSR-----QSGGRGQYGD-----VHIEFTPNETGAGFEFE----- 525
Query: 1046 LAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101
N +V +P E V+ GL ++++ ++ G+
Sbjct: 526 ----------------NAIVGGVVPREYIPSVEAGLKDAMENGVLAGY------------ 557
Query: 1102 PIRNVKFKILDA----VIATEPLHRGGGQIIPTARRVAYSAFLMAT-----PRLMEPYLF 1152
P+ +VK K+ D V ++E A ++A S L P ++EP +
Sbjct: 558 PLIDVKAKLYDGSYHDVDSSE-----------MAFKIAASLALKEAAKKCDPVILEPMMK 606
Query: 1153 VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 1212
V ++ P + + + + RRG V D P + A++P + FG+ T LR++TQG
Sbjct: 607 VTIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Query: 1213 QAFCLSVFHHWQIVP 1227
+ F H+ VP
Sbjct: 665 RGTYTMYFDHYAEVP 679
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGHV+F+ EV ++R+ DG V +DA GV TE + + A + + VNK+D+L
Sbjct: 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVA 59
M L K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V+
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVS 481
Query: 60 FCETVVETSSLKC-FAETPNKRNK---ITMIAEPLEKGLAEDIENQIV 103
+ ET ++ ++ F+ R + + + P E G + EN IV
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIV 529
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 179/432 (41%), Gaps = 84/432 (19%)
Query: 812 LARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI 871
ARV SG L +G S+++ + VGR+ A + E+ V AG+ +
Sbjct: 338 FARVYSGVLSSGD---------SVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAAL 388
Query: 872 EGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNK 931
G+ +T L + E I + F + VI +AVEP ++ KM L K+ +
Sbjct: 389 IGMKD----VTTGDTLCSIEKPIILERMDF-PEPVISVAVEPKTKADQEKMGIALGKLAQ 443
Query: 932 SYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSS 990
P K EESG+ ++ G GEL+LD ++ +++ + ++ + P VA+ ET+ + +
Sbjct: 444 EDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFG-VEANIGKPQVAYRETITKDNV 502
Query: 991 LKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARS 1050
+IE + V + + + G + W +A
Sbjct: 503 ---------------------------EIEGKFVRQSGGRGQFG------HCWIRFSAAD 529
Query: 1051 IWAFGPEVTG---PNILVDDTLPSE----VDKGLLGSVKDSIVQGF-----QWGTREGPL 1098
+ G G N +V +P E + KG+ +K+ +V G+ + +G
Sbjct: 530 VDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSY 589
Query: 1099 CEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAP 1158
+ + FKI ++ + +GGG++ +EP + VEV P
Sbjct: 590 HDVDSNEMAFKIAASMATKQLAQKGGGKV-------------------LEPIMKVEVVTP 630
Query: 1159 ADCVSAVYTVLAKRRGHVT-QDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCL 1217
D + V L +RRG + + V G I+A +P + FG+ TD+R+ +QG+A
Sbjct: 631 EDYMGDVMGDLNRRRGLIQGMEDTVSGK---VIRAEVPLGEMFGYATDVRSMSQGRASYS 687
Query: 1218 SVFHHWQIVPGD 1229
F + P +
Sbjct: 688 MEFSKYAEAPSN 699
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTL 460
RN+ + H+ GKTT + ++ T ++ TD + EQERG++I ++ VT
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 461 LLPDVKGK--NYLMNIFDTPA 479
+G+ NY +N+ DTP
Sbjct: 74 FWKGSRGQYDNYRVNVIDTPG 94
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PGHV+F+ EV ++R+ DG V+ GV +E + + A + + + VNK+DR
Sbjct: 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 LRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCET 63
L K+ + P K EESG+ ++ G GEL+LD ++ +++ + ++ + P VA+ ET
Sbjct: 438 LGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFG-VEANIGKPQVAYRET 496
Query: 64 VVE 66
+ +
Sbjct: 497 ITK 499
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 577 KVEVNRVPAGNWVLIEGIDQ-PIVKTSTITDLITNEDI----TSNKFLIDGFPRNQNNLD 631
+ EV+ A +L E +++ +V T+ D++ + + TS FLIDG+PR +
Sbjct: 45 RAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGE 104
Query: 632 GWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMP 691
+ +++ LLYV D + +R LKRG E SGR DDNEE++KKR+ Y T P
Sbjct: 105 EFERKIGQPTLLLYV---DAGPETMTKRLLKRG-ETSGRVDDNEETIKKRLETYYKATEP 160
Query: 692 IIKFFEAKNLVKRFNAEKSL 711
+I F+E + +V++ NAE S+
Sbjct: 161 VIAFYEKRGIVRKVNAEGSV 180
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And
The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 183/426 (42%), Gaps = 69/426 (16%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SG +++G ++++ + GR+ A + E+ V AG
Sbjct: 333 TFF----RVYSGVVNSGD---------TVLNSVKAARERFGRIVQMHANKREEIKEVRAG 379
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGL 926
+ G+ K T D + + D I + VI IAVEP ++ KM L
Sbjct: 380 DIAAAIGL-----KDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLAL 434
Query: 927 RKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 985
++ K P EES + ++ G GEL+LD ++ +++ ++ ++ V P VA+ ET+
Sbjct: 435 GRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN-VEANVGKPQVAYRETI 493
Query: 986 VETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDL 1045
R K+T D+E + + + + G Y +
Sbjct: 494 ---------------RQKVT------------DVEGKHAKQSGGRGQYGHVVIDMYPLEP 526
Query: 1046 LAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRN 1105
+ + F ++ G ++ + +P+ VDKG+ +K + G+ P+ + IR
Sbjct: 527 GSNPKGYEFINDIKG-GVIPGEYIPA-VDKGIQEQLKAGPLAGY-------PVVDMGIR- 576
Query: 1106 VKFKILDAVIATEPLHRGGGQIIPTARRVAY-SAFLMATPRLMEPYLFVEVQAPADCVSA 1164
+ F V ++E + A +A+ F A P L+EP + VEV+ P +
Sbjct: 577 LHFGSYHDVDSSELAFK-------LAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGD 629
Query: 1165 VYTVLAKRRGHVT-QDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHW 1223
V L++RRG + Q++ V G I A +P + FG+ T LR+ T+G+A F +
Sbjct: 630 VIGDLSRRRGMLKGQESEVTG---VKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKY 686
Query: 1224 QIVPGD 1229
P +
Sbjct: 687 DEAPSN 692
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGHV+F+ EV +MR+ DG V+ A GV +E + + A + K+ VNK+DR+
Sbjct: 89 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 146
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTL 460
RN+ + H+ GKTT + ++ T ++ D + EQERG++I ++ T
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 461 LLPDVKGKNY---LMNIFDTPA 479
+ K Y +NI DTP
Sbjct: 70 FWSGM-AKQYEPHRINIIDTPG 90
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2 LDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFC 61
L L K + S+ + T EES + ++ G GEL+LD ++ +++ ++ ++ V P VA+
Sbjct: 434 LGRLAKEDPSFRVWTD--EESNQTIIAGMGELHLDIIVDRMKREFN-VEANVGKPQVAYR 490
Query: 62 ETV 64
ET+
Sbjct: 491 ETI 493
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 183/426 (42%), Gaps = 69/426 (16%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SG +++G ++++ + GR+ A + E+ V AG
Sbjct: 334 TFF----RVYSGVVNSGD---------TVLNSVKAARERFGRIVQMHANKREEIKEVRAG 380
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGL 926
+ G+ K T D + + D I + VI IAVEP ++ KM L
Sbjct: 381 DIAAAIGL-----KDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLAL 435
Query: 927 RKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 985
++ K P EES + ++ G GEL+LD ++ +++ ++ ++ V P VA+ ET+
Sbjct: 436 GRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN-VEANVGKPQVAYRETI 494
Query: 986 VETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDL 1045
R K+T D+E + + + + G Y +
Sbjct: 495 ---------------RQKVT------------DVEGKHAKQSGGRGQYGHVVIDMYPLEP 527
Query: 1046 LAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRN 1105
+ + F ++ G ++ + +P+ VDKG+ +K + G+ P+ + IR
Sbjct: 528 GSNPKGYEFINDIKG-GVIPGEYIPA-VDKGIQEQLKAGPLAGY-------PVVDMGIR- 577
Query: 1106 VKFKILDAVIATEPLHRGGGQIIPTARRVAY-SAFLMATPRLMEPYLFVEVQAPADCVSA 1164
+ F V ++E + A +A+ F A P L+EP + VEV+ P +
Sbjct: 578 LHFGSYHDVDSSELAFK-------LAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGD 630
Query: 1165 VYTVLAKRRGHVT-QDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHW 1223
V L++RRG + Q++ V G I A +P + FG+ T LR+ T+G+A F +
Sbjct: 631 VIGDLSRRRGMLKGQESEVTG---VKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKY 687
Query: 1224 QIVPGD 1229
P +
Sbjct: 688 DEAPSN 693
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGHV+F+ EV +MR+ DG V+ A GV +E + + A + K+ VNK+DR+
Sbjct: 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTL 460
RN+ + H+ GKTT + ++ T ++ D + EQERG++I ++ T
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 461 LLPDVKGKNY---LMNIFDTPA 479
+ K Y +NI DTP
Sbjct: 71 FWSGM-AKQYEPHRINIIDTPG 91
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2 LDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFC 61
L L K + S+ + T EES + ++ G GEL+LD ++ +++ ++ ++ V P VA+
Sbjct: 435 LGRLAKEDPSFRVWTD--EESNQTIIAGMGELHLDIIVDRMKREFN-VEANVGKPQVAYR 491
Query: 62 ETV 64
ET+
Sbjct: 492 ETI 494
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 598 IVKTSTITDLITNEDI----TSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPE 653
+V T+ D++ + + TS FLIDG+PR + + + + LLYV D
Sbjct: 67 LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYV---DAGP 123
Query: 654 DVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711
+ +R LKRG E SGR DDNEE++KKR+ Y T P+I F+E + +V++ NAE S+
Sbjct: 124 ETMTQRLLKRG-ETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSV 180
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 618 FLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEES 677
FL+DGFPRN+ N + W + M D V+ +VLFFDCPE+V +R LKRG E SGR+DDN ES
Sbjct: 86 FLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG-ESSGRSDDNIES 144
Query: 678 LKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714
+KKR + +N +T +I + + VK A + + E+
Sbjct: 145 IKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEV 181
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 618 FLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEES 677
FLIDG+PR + + KE+ L V+ FD E+V +R LKR AE S R DDNEE+
Sbjct: 111 FLIDGYPRELDQGIKFEKEVCP---CLCVINFDVSEEVMRKRLLKR-AETSNRVDDNEET 166
Query: 678 LKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711
+ KR +N T P+I+ ++ +N V +A ++
Sbjct: 167 IVKRFRTFNELTKPVIEHYKQQNKVITIDASGTV 200
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 598 IVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVC 656
+V I +LI E + + + DGFPR + ++ +++ LL V+ + PE+
Sbjct: 62 LVPDDLILELIREE--LAERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEEL 119
Query: 657 VRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNA 707
VRR L+R AE GR+DDNEE++++R+ VY +T P++ ++EA+ ++KR +
Sbjct: 120 VRRILRR-AELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDG 169
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 39/146 (26%)
Query: 618 FLIDGFPRNQNNLDGWNKEMA-DKVELLYVLFFDCPEDVCVRRCLKRGAEG-SGR----- 670
F++DG+PRN + NK + ++ +L V +F+ P++V V R R SGR
Sbjct: 110 FILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKI 169
Query: 671 --------------------ADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
DDNE+ LKKR++V+ +ET P+I +++ KNL+ +A +
Sbjct: 170 FNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQ- 228
Query: 711 LVEMCVKHIPSPAENAETKVSYMYTG 736
PA + E K+S G
Sbjct: 229 -----------PANDLEKKISQHIDG 243
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 610 NEDITSNKFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRR--------- 659
++D N FL+DGFPR + +AD +L YV+ D +DV + R
Sbjct: 73 SKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRN 132
Query: 660 -----------------CLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLV 702
C K G E RADDNE ++ R+ V + P++ F+E K +
Sbjct: 133 CGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYL 192
Query: 703 KRFNAEKSL 711
+ N E+ +
Sbjct: 193 RNINGEQDM 201
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EV+ A+ C+G +L +DA++G+ T AV++ + I +NKID
Sbjct: 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKID---- 136
Query: 283 ELKLPPQDAYYKIKHIIDEINGL 305
LP D ++K I+E+ GL
Sbjct: 137 ---LPSADV-DRVKKQIEEVLGL 155
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN ++ H+ HGK+T+ D L+ T + EK + DTL E+ERG+++K V
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISER---EKREQLLDTLDVERERGITVKXQAVR 62
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
G Y +++ DTP
Sbjct: 63 XFYKAKDGNTYKLHLIDTPG 82
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EV+ A+ C+G +L +DA++G+ T AV++ + I +NKID
Sbjct: 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKID---- 136
Query: 283 ELKLPPQDAYYKIKHIIDEINGL 305
LP D ++K I+E+ GL
Sbjct: 137 ---LPSADV-DRVKKQIEEVLGL 155
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN ++ H+ HGK+T+ D L+ T + EK + DTL E+ERG+++K V
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISER---EKREQLLDTLDVERERGITVKMQAVR 62
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
+ G Y +++ DTP
Sbjct: 63 MFYKAKDGNTYKLHLIDTPG 82
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
IRN +++ H+ HGK+T+ D +I Q G E + D++ E+ERG++IKA VT
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRII-QICGGLSD--REMEAQVLDSMDLERERGITIKAQSVT 60
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
L G+ Y +N DTP
Sbjct: 61 LDYKASDGETYQLNFIDTPG 80
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKID 278
PGHV+FS EV+ ++ C+G +L VDA +GV T A++ + + +NKID
Sbjct: 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
IRN +++ H+ HGK+T+ D +I Q G E + D++ E+ERG++IKA VT
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRII-QICGGLSD--REMEAQVLDSMDLERERGITIKAQSVT 60
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
L G+ Y +N DTP
Sbjct: 61 LDYKASDGETYQLNFIDTPG 80
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKID 278
PGHV+FS EV+ ++ C+G +L VDA +GV T A++ + + +NKID
Sbjct: 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 136/334 (40%), Gaps = 60/334 (17%)
Query: 902 NTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLG-TGELYLDCVM 960
N +++ VEP P + +LD L +++ S PLL V+ + ++L G++ ++ +
Sbjct: 340 NPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVIS 399
Query: 961 HDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNK--RNKITMIAEPLEKGLAED 1018
L++ Y ++I++ +P V + E ++ + E P I + PL G
Sbjct: 400 ALLQEKY-HVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQ 458
Query: 1019 IENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLL 1078
E+ + LG QS + + R +G E +GL
Sbjct: 459 YESSV--------SLGYLNQSFQNAVMEGIR----YGCE-----------------QGLY 489
Query: 1079 G-SVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYS 1137
G +V D + F++G P+ F++L ++ + L + G +
Sbjct: 490 GWNVTDCKI-CFKYGLYYSPVSTP----ADFRMLAPIVLEQVLKKAGTE----------- 533
Query: 1138 AFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAI 1197
L+EPYL ++ AP + +S Y K ++ D + + + + IPA
Sbjct: 534 --------LLEPYLSFKIYAPQEYLSRAYNDAPKYCANIV-DTQLKNNEV-ILSGEIPAR 583
Query: 1198 DSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPL 1231
+ +DL T G++ CL+ + + G+P+
Sbjct: 584 CIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPV 617
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAI--TLCVNKIDRL 280
PGH++F EV ++ + DG +L + A +GV T R+L HA++ KM I +NKID+
Sbjct: 75 PGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALR-KMGIPTIFFINKIDQN 132
Query: 281 MLELKLPPQD 290
++L QD
Sbjct: 133 GIDLSTVYQD 142
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
I N+ ++ H+ GKTT+ + L+ + + +K TD E++RG++I+
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTG--- 58
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
+ + +N +NI DTP
Sbjct: 59 --ITSFQWENTKVNIIDTPG 76
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLG-TGELYLDCVMHDLRKMYSEIDIKVADPVVA 59
+LD L +++ S PLL V+ + ++L G++ ++ + L++ Y ++I++ +P V
Sbjct: 360 LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY-HVEIELKEPTVI 418
Query: 60 FCETVVETSSLKCFAETP 77
+ E ++ + E P
Sbjct: 419 YMERPLKNAEYTIHIEVP 436
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 20/116 (17%)
Query: 619 LIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKR-------------- 663
+ DGFPR + ++ + K +++ +VL F+ P++V + R R
Sbjct: 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKY 138
Query: 664 -----GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714
G + R DD E +KKR+ VY +T P+I++++ K +++ +A K + E+
Sbjct: 139 NPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEV 194
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 615 SNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDN 674
+ FLIDG+PR + + + + D V+ DC D R L+ + S DD
Sbjct: 91 TRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQM-SRSSLPVDDT 146
Query: 675 EESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
+++ KR+ Y ++P+I ++E K + + NAE +
Sbjct: 147 TKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGT 182
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 602 STITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCL 661
+ + + I ED N FL+DGFPR D KE V+ YVL FD P+++ V R +
Sbjct: 66 ALVKERIAQED-CRNGFLLDGFPRTIPQADAM-KEAGINVD--YVLEFDVPDELIVDRIV 121
Query: 662 KR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKF 695
R G E + R DD EE+++KR+ Y+ T P+I +
Sbjct: 122 GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGY 181
Query: 696 F 696
+
Sbjct: 182 Y 182
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 602 STITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCL 661
+ + + I ED N FL+DGFPR D KE V+ YVL FD P+++ V R +
Sbjct: 66 ALVKERIAQED-CRNGFLLDGFPRTIPQADAM-KEAGINVD--YVLEFDVPDELIVDRIV 121
Query: 662 KR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKF 695
R G E + R DD EE+++KR+ Y+ T P+I +
Sbjct: 122 GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGY 181
Query: 696 F 696
+
Sbjct: 182 Y 182
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 602 STITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCL 661
+ + + I ED N FL+DGFPR D KE V+ YVL FD P+++ V R +
Sbjct: 66 ALVKERIAQED-CRNGFLLDGFPRTIPQADAM-KEAGINVD--YVLEFDVPDELIVDRIV 121
Query: 662 KR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKF 695
R G E + R DD EE+++KR+ Y+ T P+I +
Sbjct: 122 GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGY 181
Query: 696 F 696
+
Sbjct: 182 Y 182
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 602 STITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCL 661
+ + + I ED N FL+DGFPR D KE V+ YVL FD P+++ V R +
Sbjct: 66 ALVKERIAQED-CRNGFLLDGFPRTIPQADAM-KEAGINVD--YVLEFDVPDELIVDRIV 121
Query: 662 KR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKF 695
R G E + R DD EE+++KR+ Y+ T P+I +
Sbjct: 122 GRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGY 181
Query: 696 F 696
+
Sbjct: 182 Y 182
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 27/125 (21%)
Query: 613 ITSNKFLIDGFPRNQNNLDGWNKEMADKVELL-YVLFFDCPEDVCVRRCLKR-------- 663
+ N FL+DGFPR + + M + E L V+ F P+ + +RR R
Sbjct: 92 LCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGR 151
Query: 664 ------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRF 705
G R+DDNE++LK R+ Y+T+T P+I+++ + +
Sbjct: 152 SYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRKRGIHSAI 211
Query: 706 NAEKS 710
+A ++
Sbjct: 212 DASQT 216
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADK--VELLYVLFFDCPEDVCVRRCL 661
+ D + N D +N F++DG+PR+ + EM ++ ++ VL F E+V + R
Sbjct: 88 VDDRLNNPD-AANGFILDGYPRSVEQAKALH-EMLERRGTDIDAVLEFRVSEEVLLERL- 144
Query: 662 KRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHI 719
+G GRADD ++ + R+ VY ET P+++++ ++ +K +A ++ E+ + +
Sbjct: 145 ----KGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARAL 196
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADK--VELLYVLFFDCPEDVCVRRCL 661
+ D + N D +N F++DG+PR+ + EM ++ ++ VL F E+V + R
Sbjct: 68 VDDRLNNPD-AANGFILDGYPRSVEQAKALH-EMLERRGTDIDAVLEFRVSEEVLLERL- 124
Query: 662 KRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHI 719
+G GRADD ++ + R+ VY ET P+++++ ++ +K +A ++ E+ + +
Sbjct: 125 ----KGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARAL 176
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 31/125 (24%)
Query: 613 ITSNKFLIDGFPRNQNNLDGWNK---EMADKVELLYVLFFDCPEDVCVRRCLKRGAE-GS 668
+ N F++DGFPR +G K E+ D L V++F+ + + R R S
Sbjct: 81 VCVNGFVLDGFPRTIPQAEGLAKILSEIGD--SLTSVIYFEIDDSEIIERISGRCTHPAS 138
Query: 669 GRA-------------------------DDNEESLKKRISVYNTETMPIIKFFEAKNLVK 703
GR DDN E++K R+ V++ +T P++KF+E ++K
Sbjct: 139 GRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILK 198
Query: 704 RFNAE 708
R NA+
Sbjct: 199 RVNAK 203
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 31/125 (24%)
Query: 616 NKFLIDGFPRNQNNLDGWNKEMAD--------------KVELL---------------YV 646
N FL+DGFPR + ++ +AD K EL+ Y
Sbjct: 79 NGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTGRRICKVCGTSYH 138
Query: 647 LFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFN 706
L F+ P+ +C K G E RADDN +++ R+ V +T P++ F+++K ++ N
Sbjct: 139 LLFNPPQ--VEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNIN 196
Query: 707 AEKSL 711
+K +
Sbjct: 197 GQKDI 201
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 27/122 (22%)
Query: 616 NKFLIDGFPRNQNNLDGWNKEMADKVELL-YVLFFDCPEDVCVRRCLKR----------- 663
N FL+DGFPR + + M + E L V+ F P+ + +RR R
Sbjct: 95 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYH 154
Query: 664 ---------------GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAE 708
G R+DDN+++LK R+ Y+T+T P+++++ + + +A
Sbjct: 155 EEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDAS 214
Query: 709 KS 710
++
Sbjct: 215 QT 216
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 31/123 (25%)
Query: 618 FLIDGFPRNQNN--------------LDGWNKEMADKVELL---------------YVLF 648
FL+DGFPR +D DK EL+ Y L
Sbjct: 81 FLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLV 140
Query: 649 FDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAE 708
F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+++K ++ N +
Sbjct: 141 FNPPKTPGI--CDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQ 198
Query: 709 KSL 711
+ +
Sbjct: 199 QDI 201
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 599 VKTSTITDLITNEDITSNKFLIDGFPR---NQNNLDGWNKEMADKVELLYVLFFDCPEDV 655
+ + I D +TN N F++DGFPR LD KE +E L D +++
Sbjct: 67 IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD--DEL 124
Query: 656 CVRRCLKR--------------------------GAEGSGRADDNEESLKKRISVYNTET 689
V R R G R+DDN ++LKKR++ Y+ +T
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 184
Query: 690 MPIIKFFE 697
PI+ F++
Sbjct: 185 EPIVDFYK 192
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 599 VKTSTITDLITNEDITSNKFLIDGFPR---NQNNLDGWNKEMADKVELLYVLFFDCPEDV 655
+ + I D +TN N F++DGFPR LD KE +E L D +++
Sbjct: 67 IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD--DEL 124
Query: 656 CVRRCLKR--------------------------GAEGSGRADDNEESLKKRISVYNTET 689
V R R G R+DDN ++LKKR++ Y+ +T
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 184
Query: 690 MPIIKFFE 697
PI+ F++
Sbjct: 185 EPIVDFYK 192
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLAN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQRDI 201
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLAN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQRDI 201
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLAN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQRDI 201
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLAN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQRDI 201
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLAN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQQDI 201
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F++ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQQDI 201
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V +T P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLVN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQRDI 201
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 610 NEDITSNKFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRR--------- 659
++D FL+DGFPR D + + D +L YVL ++ ++R
Sbjct: 73 SKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKT 132
Query: 660 -----------------CLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLV 702
C K G E R DD E++K R+ V +T P++ F+ K ++
Sbjct: 133 CGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVL 192
Query: 703 KRFNAEKSLVEMCV 716
K + ++ + ++ V
Sbjct: 193 KDIDGQQDIKKVFV 206
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 29/108 (26%)
Query: 615 SNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCP-EDVCVRRCLKRGAEGSGRA-- 671
+N +L DGFPR D KE V + YVL D P ++ R +R SGR
Sbjct: 86 ANGYLFDGFPRTIAQADA-XKEAG--VAIDYVLEIDVPFSEIIERXSGRRTHPASGRTYH 142
Query: 672 -----------------------DDNEESLKKRISVYNTETMPIIKFF 696
DD EE++KKR+ VY +T P+I ++
Sbjct: 143 VKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1153 VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 1212
VEV P + + V L RRG + P + + I+AF+P + FG+ TDLR+ TQG
Sbjct: 3 VEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQG 60
Query: 1213 QA 1214
+
Sbjct: 61 RG 62
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 645 YVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704
Y L F+ P+ + C K G E RADDNEE++ KR+ V + P++ F+ K +
Sbjct: 137 YHLVFNPPKTPGI--CDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDFYSEKGYLAN 194
Query: 705 FNAEKSL 711
N ++ +
Sbjct: 195 VNGQRDI 201
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus
Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 124/328 (37%), Gaps = 67/328 (20%)
Query: 907 IKIAVEPVNPSELPKMLDGLRKVNKSYPLLT-TKVEESGEHVVLGTGELYLDCVMHDLRK 965
+ +A+ P ++ ++ + LRK+ + P L + EE+GE ++ G GEL+L L+
Sbjct: 383 VPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQD 442
Query: 966 MYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVH 1025
E++ V P V + ET+ K AE K
Sbjct: 443 YGVEVEFSV--PKVPYRETI------KKVAEGQGK------------------------- 469
Query: 1026 IAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSI 1085
KK+ G Q W L S + F +TG +PS+ +++I
Sbjct: 470 ---YKKQTGGHGQYGDVWLRLEPASEYGFEWRITG------GVIPSK--------YQEAI 512
Query: 1086 VQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHR--GGGQIIPTARRVAYSAFLM-A 1142
+G + ++G L P+ K A++ H A +A+ + A
Sbjct: 513 EEGIKEAAKKGVLAGFPVMGFK-----AIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEA 567
Query: 1143 TPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHV---TQDAPVPGSPLYTIKAFIPAIDS 1199
P L+EP ++V AP + V V + L RRG + Q+ L + A +P +
Sbjct: 568 HPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQE-----GALSVVHAEVPLAEV 622
Query: 1200 FGFETDLRTHTQGQAFCLSVFHHWQIVP 1227
+ L T G F H+ VP
Sbjct: 623 LEYYKALPGLTGGAGAYTLEFSHYAEVP 650
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTD 441
+IR VALVGH GKTT+ + L+ +T R+ E+ TD
Sbjct: 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTD 50
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PG+ +F E+ A+ D ++ V A GV + TER A + + + V K+D+
Sbjct: 82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 599 VKTSTITDLITNEDITSNKFLIDGFPR---NQNNLDGWNKEMADKVELLYVLFFDCPEDV 655
+ + I D +TN N F++ GFPR LD KE +E L D +++
Sbjct: 67 IMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD--DEL 124
Query: 656 CVRRCLKRGAE-GSGRA-------------------------DDNEESLKKRISVYNTET 689
V R R SGR+ DDN ++LKKR++ Y+ +T
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQT 184
Query: 690 MPIIKFFEAKNLVKRFNAEK 709
PI+ F++ + +A +
Sbjct: 185 EPIVDFYKKTGIWAGVDASQ 204
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PGH FS ++ D V+L V A +GVM T ++HA + I L +NK D+
Sbjct: 60 PGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDK 116
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 33/146 (22%)
Query: 594 IDQ-PIVKTSTITDLITNE--DITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFD 650
IDQ ++ +T L+ +E ++T +L+DGFPR + ++ ++ V+ +
Sbjct: 59 IDQGKLIPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAY----QIDTVINLN 114
Query: 651 CPEDVCVRRCLKRGAE-GSGRA-------------------------DDNEESLKKRISV 684
P +V +R R GSGR DD E++ KR+
Sbjct: 115 VPFEVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKA 174
Query: 685 YNTETMPIIKFFEAKNLVKRFNAEKS 710
Y +T P+++++ K +++ F+ ++
Sbjct: 175 YEAQTEPVLEYYRKKGVLETFSGTET 200
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGH +FS++ + D ++ +DAA+GV T +L+ + VNK+DR L
Sbjct: 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PGH F+ ++ D V+L V A +GVM T + HA + I + +NK+D+
Sbjct: 63 PGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDK 119
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 594 IDQ-PIVKTSTITDLITNE--DITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFD 650
IDQ ++ +T L +E ++T +L+DGFPR + ++ ++ V+ +
Sbjct: 60 IDQGKLIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAY----QIDTVINLN 115
Query: 651 CPEDVCVRRCLKRGAE-GSGRA-------------------------DDNEESLKKRISV 684
P +V +R R SGR DD E++ KR+
Sbjct: 116 VPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKA 175
Query: 685 YNTETMPIIKFFEAKNLVKRFNAEKS 710
Y +T P++++++ K +++ F+ ++
Sbjct: 176 YEDQTKPVLEYYQKKGVLETFSGTET 201
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 42/182 (23%)
Query: 393 MMDTPHLIRNVALVGHLHHGKTTMIDCL-----------IRQTHPGYRQPAE--EKNLRY 439
M PHL N+ ++GH+ HGK+T++ L +++ ++ + EK
Sbjct: 1 MSQKPHL--NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFL 58
Query: 440 TDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIF 499
D L E+ERGV+I L + K Y I D P ++++ N+
Sbjct: 59 LDRLKEERERGVTI-----NLTFMRFETKKYFFTIIDAPGH-----------RDFVKNMI 102
Query: 500 DTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHM 559
D + S K A S E + ++A+ +G LDQL + +
Sbjct: 103 TGASQADAAILVVSAKKGEYEAGMSVEGQTREHI--ILAKTMG---------LDQLIVAV 151
Query: 560 NK 561
NK
Sbjct: 152 NK 153
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PGH +FS++ + D ++ +DAA+GV T +L++ I +NK+DR
Sbjct: 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDR 146
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PGH +FS++ + D ++ +DAA+GV T +L++ I +NK+DR
Sbjct: 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDR 146
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 393 MMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGY---------------RQPAEEKNL 437
M + PH+ N+ ++GH+ HGK+T++ L+ + GY R K
Sbjct: 1 MAEKPHM--NLVVIGHVDHGKSTLVGHLLYRL--GYIEEKKLKELEEQAKSRGKESFKFA 56
Query: 438 RYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479
D + E+ERG++I L + K Y+ I D P
Sbjct: 57 WILDKMKEERERGITI-----DLTFMKFETKKYVFTIIDAPG 93
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 391 ADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGY---------------RQPAEEK 435
+ M + PH+ N+ ++GH+ HGK+T++ L+ + GY R K
Sbjct: 2 SHMAEKPHM--NLVVIGHVDHGKSTLVGHLLYRL--GYIEEKKLKELEEQAKSRGKESFK 57
Query: 436 NLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479
D + E+ERG++I L + K Y+ I D P
Sbjct: 58 FAWILDKMKEERERGITI-----DLTFMKFETKKYVFTIIDAPG 96
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 393 MMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVS 452
+ D PH+ NV +GH+ HGKTT+ + + G A+ K D E+ RG++
Sbjct: 9 VRDKPHV--NVGTIGHVDHGKTTLTAAITKILAEG--GGAKFKKYEEIDNAPEERARGIT 64
Query: 453 IKASPV 458
I A+ V
Sbjct: 65 INAAHV 70
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGH +F+++ + D + +DAA+GV T +L + I +NK DR
Sbjct: 90 PGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHTPIXTFINKXDR--- 146
Query: 283 ELKLPPQDAYYKIKHIIDEINGLLR 307
D I+ ++DEI +LR
Sbjct: 147 -------DTRPSIE-LLDEIESILR 163
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA----EEKNLRY--TDTLFTEQERGVSIK 454
R A++ H GKTT+ + L+ G Q A K R+ +D E++RG+S+
Sbjct: 14 RTFAIISHPDAGKTTLTEKLL--LFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVT 71
Query: 455 ASPVTLLLPDVKGKNYLMNIFDTPA 479
S + K+YL+N+ DTP
Sbjct: 72 TS-----VXQFPYKDYLINLLDTPG 91
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLL 462
V LVG GKT+++ P YT T+F + +K PV L +
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPE----------SYTPTVFERYMVNLQVKGKPVHLHI 86
Query: 463 PDVKGK---NYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKK 515
D G+ + L +F P + V LL DV N NIF+ W V F KK
Sbjct: 87 WDTAGQDDYDRLRPLF-YPDASVLLLCFDVTSPNSFDNIFNR---WYPEVNHFCKK 138
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 295 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 347
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 348 NTSHVEYDTP 357
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 295 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 347
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 348 NTSHVEYDTP 357
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 877 PIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKS 932
P++ D + + +Y++R N Q I+I V+ VNPS LP ++ GL V+ S
Sbjct: 773 PLIIVCDRFDFVHDLVLYLYRN---NLQKYIEIYVQKVNPSRLPVVIGGLLDVDCS 825
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVTAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 58 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 108
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 109 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 11 PHV--NVGTIGHVDHGKTTLTAALT------YVAAAENPNVEVKDYGDIDKAPEERARGI 62
Query: 452 SIKASPV 458
+I + V
Sbjct: 63 TINTAHV 69
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVTAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-AEEKNLRYTDTLFTEQERGVSIKA 455
PH+ NV +GH+ HGKTT+ L T P E K+ D E+ RG++I
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALTFVT--AAENPNVEVKDYGDIDKAPEERARGITINT 65
Query: 456 SPV 458
+ V
Sbjct: 66 AHV 68
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRY-----TDTLFTEQERGV 451
PH+ NV +GH+ HGKTT+ L Y AE N+ D E+ RG+
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALT------YVAAAENPNVEVKDYGDIDKAPEERARGI 61
Query: 452 SIKASPV 458
+I + V
Sbjct: 62 TINTAHV 68
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 188 KIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247
+ R +N++ Y + K H + C PGH ++ + DG +L V
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDC---------PGHADYIKNMITGAAQMDGAILVVS 107
Query: 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278
AA+G M T + A Q + I + +NK+D
Sbjct: 108 AADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-AEEKNLRYTDTLFTEQERGVSIKA 455
PH+ NV +GH+ HGKTT+ L T P E K+ D E+ RG++I
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALTFVT--AAENPNVEVKDYGDIDKAPEERARGITINT 65
Query: 456 SPV 458
+ V
Sbjct: 66 AHV 68
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
PH+ NV +GH+ HGKTT+ + + G A+ K D E+ RG++I A+
Sbjct: 2 PHV--NVGTIGHVDHGKTTLTAAITKILAEG--GGAKFKKYEEIDNAPEERARGITINAA 57
Query: 457 PV 458
V
Sbjct: 58 HV 59
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PGH F+ + D VVL V A +GVM T ++HA ++ + + VNKID+
Sbjct: 59 PGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDK 115
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLL 461
+ LVG + GKT M+ L + +P P +N YT L TE++R V L
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YTACLETEEQR--------VELS 62
Query: 462 LPDVKGKNYLMNI 474
L D G Y N+
Sbjct: 63 LWDTSGSPYYDNV 75
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLL 461
+ LVG + GKT M+ L + +P P +N YT L TE++R V L
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YTACLETEEQR--------VELS 61
Query: 462 LPDVKGKNYLMNI 474
L D G Y N+
Sbjct: 62 LWDTSGSPYYDNV 74
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLL 461
+ LVG + GKT M+ L + +P P +N YT L TE++R V L
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YTACLETEEQR--------VELS 78
Query: 462 LPDVKGKNYLMNI 474
L D G Y N+
Sbjct: 79 LWDTSGSPYYDNV 91
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 11 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 63
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 64 NTSHVEYDTP 73
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 62
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 63 NTSHVEYDTP 72
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 62
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 63 NTSHVEYDTP 72
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 62
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 63 NTSHVEYDTP 72
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 11 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 63
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 64 NTSHVEYDTP 73
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 397 PHLIRNVALVGHLHHGKTTM---IDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ NV +GH+ HGKTT+ I ++ +T+ G + ++ D E+ RG++I
Sbjct: 2 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ-----IDNAPEEKARGITI 54
Query: 454 KASPVTLLLP 463
S V P
Sbjct: 55 NTSHVEYDTP 64
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYT-----DTLFTEQERGVSIKAS 456
NV +GH+ HGKTT+ L Y AE +N+ D E+ RG++I +
Sbjct: 13 NVGTIGHVDHGKTTLTAALT------YVAAAENRNVEVKDYGDIDKAREERARGITINTA 66
Query: 457 PV 458
V
Sbjct: 67 HV 68
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
N+ +VGH+ HGKTT+ L +TDT E RG++IK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIK 49
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
N+ +VGH+ HGKTT+ L +TDT E RG++IK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIK 49
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
N+ +VGH+ HGKTT+ L +TDT E RG++IK
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIK 50
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 15/53 (28%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
N+ VGH+ HGKTT+ L +TDT E RG++IK
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIK 49
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGH F+ L D +L VD EG T+ L + + NKIDR+
Sbjct: 78 PGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKIDRI 135
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280
PGH F+ L D +L VD EG T+ L + + NKIDR+
Sbjct: 78 PGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,960,308
Number of Sequences: 62578
Number of extensions: 1690508
Number of successful extensions: 4299
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3981
Number of HSP's gapped (non-prelim): 254
length of query: 1291
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1181
effective length of database: 8,089,757
effective search space: 9554003017
effective search space used: 9554003017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)