Query psy15088
Match_columns 1291
No_of_seqs 645 out of 4846
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:13:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0468|consensus 100.0 2E-158 4E-163 1350.5 52.1 804 324-1291 52-971 (971)
2 KOG0469|consensus 100.0 3E-152 6E-157 1264.0 36.4 777 174-1274 57-841 (842)
3 PLN00116 translation elongatio 100.0 2E-120 4E-125 1164.9 62.0 797 383-1274 2-842 (843)
4 PTZ00416 elongation factor 2; 100.0 1E-119 3E-124 1154.3 60.3 797 383-1274 2-835 (836)
5 COG0480 FusA Translation elong 100.0 1E-110 2E-115 1029.4 57.9 673 397-1262 7-697 (697)
6 KOG0467|consensus 100.0 1E-111 2E-116 987.4 40.5 782 175-1272 48-878 (887)
7 PRK07560 elongation factor EF- 100.0 6E-107 1E-111 1030.8 57.4 718 387-1273 7-731 (731)
8 TIGR00490 aEF-2 translation el 100.0 7E-103 1E-107 990.9 58.6 709 387-1265 6-720 (720)
9 KOG0465|consensus 100.0 1E-101 3E-106 885.6 38.0 660 398-1232 37-715 (721)
10 PRK12739 elongation factor G; 100.0 9.9E-97 2E-101 933.2 60.1 660 397-1229 5-679 (691)
11 PRK00007 elongation factor G; 100.0 1.2E-96 3E-101 931.5 59.7 661 397-1229 7-682 (693)
12 TIGR00484 EF-G translation elo 100.0 9.1E-95 2E-99 916.1 55.4 661 396-1231 6-681 (689)
13 PRK13351 elongation factor G; 100.0 5.9E-93 1.3E-97 902.4 58.0 663 397-1232 5-682 (687)
14 PRK12740 elongation factor G; 100.0 1.4E-87 2.9E-92 852.7 55.2 654 406-1232 1-664 (668)
15 KOG0464|consensus 100.0 5.8E-83 1.3E-87 696.3 27.4 665 397-1227 34-738 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 4.2E-62 9.1E-67 600.3 41.7 459 400-1231 1-476 (594)
17 PRK05433 GTP-binding protein L 100.0 1.9E-61 4.2E-66 596.9 42.5 501 394-1257 1-519 (600)
18 PRK10218 GTP-binding protein; 100.0 7.4E-61 1.6E-65 587.6 43.9 460 397-1229 2-479 (607)
19 TIGR01393 lepA GTP-binding pro 100.0 1.6E-60 3.4E-65 588.3 42.8 496 399-1257 2-516 (595)
20 KOG0462|consensus 100.0 6.5E-55 1.4E-59 496.7 31.7 472 396-1227 55-535 (650)
21 PRK00741 prfC peptide chain re 100.0 2.4E-54 5.1E-59 525.6 35.7 454 394-987 4-473 (526)
22 TIGR00503 prfC peptide chain r 100.0 4.3E-53 9.4E-58 514.6 36.6 447 393-982 4-469 (527)
23 COG0481 LepA Membrane GTPase L 100.0 8.3E-52 1.8E-56 463.7 33.6 497 396-1257 5-522 (603)
24 KOG0469|consensus 100.0 1.9E-53 4.1E-58 474.5 13.7 194 1-198 504-697 (842)
25 COG1217 TypA Predicted membran 100.0 8.8E-50 1.9E-54 446.0 34.5 459 398-1229 3-478 (603)
26 COG4108 PrfC Peptide chain rel 100.0 2.8E-44 6.1E-49 400.9 22.1 434 398-976 10-464 (528)
27 KOG0468|consensus 100.0 6.2E-43 1.3E-47 402.0 14.1 198 1-198 602-799 (971)
28 cd01683 EF2_IV_snRNP EF-2_doma 100.0 1.6E-40 3.6E-45 348.6 16.2 178 976-1153 1-178 (178)
29 COG1160 Predicted GTPases [Gen 100.0 1.8E-35 4E-40 339.0 20.5 248 191-530 28-297 (444)
30 cd01681 aeEF2_snRNP_like_IV Th 100.0 1.4E-34 3E-39 306.4 15.1 177 976-1152 1-177 (177)
31 cd01683 EF2_IV_snRNP EF-2_doma 100.0 3.8E-34 8.2E-39 300.6 12.9 143 55-197 1-143 (178)
32 PTZ00416 elongation factor 2; 100.0 1.6E-33 3.6E-38 361.7 18.5 193 1-197 498-690 (836)
33 PLN00116 translation elongatio 100.0 4.9E-33 1.1E-37 358.1 20.6 193 1-197 504-697 (843)
34 TIGR00490 aEF-2 translation el 100.0 1.2E-30 2.6E-35 331.8 19.5 186 1-197 406-593 (720)
35 cd01886 EF-G Elongation factor 100.0 2.9E-30 6.2E-35 291.2 15.5 260 402-722 1-270 (270)
36 PRK07560 elongation factor EF- 100.0 5.7E-30 1.2E-34 326.5 18.5 186 1-197 406-595 (731)
37 cd01681 aeEF2_snRNP_like_IV Th 100.0 1.2E-29 2.6E-34 268.7 13.0 143 55-197 1-143 (177)
38 cd04169 RF3 RF3 subfamily. Pe 100.0 1.8E-28 4E-33 276.3 14.9 253 399-722 1-267 (267)
39 KOG0467|consensus 99.9 4.3E-28 9.4E-33 286.0 5.8 188 1-191 487-713 (887)
40 cd04168 TetM_like Tet(M)-like 99.9 3.2E-26 7E-31 254.0 14.8 233 402-722 1-237 (237)
41 CHL00071 tufA elongation facto 99.9 1.2E-25 2.7E-30 269.2 21.0 129 394-530 6-136 (409)
42 COG5256 TEF1 Translation elong 99.9 3.2E-25 6.9E-30 250.3 20.1 143 401-555 8-172 (428)
43 PRK12736 elongation factor Tu; 99.9 8.9E-25 1.9E-29 260.6 22.1 277 399-886 11-295 (394)
44 cd04170 EF-G_bact Elongation f 99.9 1.4E-24 3.1E-29 246.6 15.0 260 402-722 1-268 (268)
45 KOG0460|consensus 99.9 7.7E-25 1.7E-29 237.9 10.5 264 402-876 56-328 (449)
46 PLN03126 Elongation factor Tu; 99.9 1.3E-23 2.8E-28 253.6 21.3 138 385-530 66-205 (478)
47 PRK12735 elongation factor Tu; 99.9 1.9E-23 4.1E-28 249.4 22.1 125 398-530 10-136 (396)
48 PTZ00141 elongation factor 1- 99.9 1E-23 2.2E-28 253.9 19.7 125 400-530 7-153 (446)
49 TIGR00485 EF-Tu translation el 99.9 1.4E-23 3.1E-28 250.7 20.5 125 397-530 9-136 (394)
50 PLN00043 elongation factor 1-a 99.9 1.8E-23 4E-28 251.5 19.5 125 400-530 7-153 (447)
51 PRK00049 elongation factor Tu; 99.9 4.9E-23 1.1E-27 245.6 22.6 125 398-530 10-136 (396)
52 COG0480 FusA Translation elong 99.9 1E-23 2.2E-28 260.9 13.8 147 1-198 422-574 (697)
53 TIGR03594 GTPase_EngA ribosome 99.9 3.8E-23 8.3E-28 251.1 18.1 242 196-530 29-291 (429)
54 PRK00093 GTP-binding protein D 99.9 2.6E-23 5.7E-28 252.8 16.3 239 198-530 33-292 (435)
55 COG0050 TufB GTPases - transla 99.9 1.7E-23 3.8E-28 223.5 12.6 121 402-530 14-136 (394)
56 PLN03127 Elongation factor Tu; 99.9 3.1E-22 6.7E-27 240.6 19.2 124 398-530 59-185 (447)
57 PRK12739 elongation factor G; 99.9 1E-22 2.2E-27 259.0 14.7 147 1-197 421-572 (691)
58 PRK12317 elongation factor 1-a 99.9 6.1E-22 1.3E-26 239.5 19.9 125 400-530 6-147 (425)
59 PRK05306 infB translation init 99.9 3.3E-21 7.2E-26 242.5 25.0 314 398-955 288-628 (787)
60 TIGR02034 CysN sulfate adenyly 99.9 9.5E-22 2.1E-26 235.3 17.6 123 402-530 2-141 (406)
61 PRK03003 GTP-binding protein D 99.9 1.2E-21 2.5E-26 239.5 16.9 225 214-530 85-330 (472)
62 PRK00007 elongation factor G; 99.9 5.9E-22 1.3E-26 251.8 14.5 147 1-197 424-575 (693)
63 PRK05124 cysN sulfate adenylyl 99.9 2.7E-21 5.9E-26 234.7 19.6 127 398-530 25-168 (474)
64 PRK09518 bifunctional cytidyla 99.9 1.4E-21 3.1E-26 249.3 16.9 243 197-530 306-569 (712)
65 PRK13351 elongation factor G; 99.9 1.3E-21 2.7E-26 249.9 14.7 148 1-198 420-572 (687)
66 TIGR00484 EF-G translation elo 99.9 1.9E-21 4.1E-26 247.6 14.3 146 1-197 422-572 (689)
67 TIGR00483 EF-1_alpha translati 99.9 9.1E-21 2E-25 229.2 18.6 127 398-530 5-149 (426)
68 cd01885 EF2 EF2 (for archaea a 99.8 3.4E-21 7.3E-26 211.0 12.7 126 401-530 1-133 (222)
69 KOG0458|consensus 99.8 2.6E-20 5.5E-25 217.4 17.9 147 397-555 174-342 (603)
70 cd04098 eEF2_C_snRNP eEF2_C_sn 99.8 4.6E-21 1E-25 175.4 7.6 80 1148-1227 1-80 (80)
71 TIGR00487 IF-2 translation ini 99.8 2.5E-19 5.3E-24 221.3 25.2 306 399-939 86-418 (587)
72 PTZ00327 eukaryotic translatio 99.8 6.6E-20 1.4E-24 219.9 19.4 114 401-530 35-179 (460)
73 PRK12740 elongation factor G; 99.8 2E-20 4.4E-25 238.6 15.7 147 1-197 403-554 (668)
74 PRK05506 bifunctional sulfate 99.8 1.7E-19 3.7E-24 227.9 19.0 124 401-530 25-165 (632)
75 KOG0465|consensus 99.8 6.6E-20 1.4E-24 213.1 13.0 152 1-201 452-609 (721)
76 PF00009 GTP_EFTU: Elongation 99.8 1E-20 2.2E-25 203.5 5.6 125 399-530 2-130 (188)
77 PRK10512 selenocysteinyl-tRNA- 99.8 7.8E-19 1.7E-23 218.6 19.6 109 402-530 2-112 (614)
78 CHL00189 infB translation init 99.8 1.2E-18 2.7E-23 217.4 20.1 301 398-930 242-566 (742)
79 COG2895 CysN GTPases - Sulfate 99.8 8.8E-19 1.9E-23 192.7 15.4 142 400-553 6-164 (431)
80 COG1217 TypA Predicted membran 99.8 1.8E-19 3.8E-24 203.6 9.3 185 171-413 42-230 (603)
81 PRK04000 translation initiatio 99.8 4.8E-18 1E-22 203.5 19.6 109 401-524 10-142 (411)
82 COG5257 GCD11 Translation init 99.8 1.9E-17 4E-22 179.9 20.9 110 401-525 11-144 (415)
83 PF00679 EFG_C: Elongation fac 99.8 4.7E-19 1E-23 166.0 5.8 87 1145-1232 1-87 (89)
84 smart00838 EFG_C Elongation fa 99.8 8.4E-19 1.8E-23 163.0 7.2 83 1146-1230 1-83 (85)
85 cd01884 EF_Tu EF-Tu subfamily. 99.8 2E-18 4.3E-23 186.1 10.8 121 401-530 3-126 (195)
86 TIGR03680 eif2g_arch translati 99.8 1.1E-17 2.4E-22 200.5 17.9 114 401-530 5-142 (406)
87 TIGR00475 selB selenocysteine- 99.7 2.1E-17 4.6E-22 205.4 19.5 108 402-530 2-111 (581)
88 cd04096 eEF2_snRNP_like_C eEF2 99.7 4.1E-18 8.9E-23 156.5 7.3 80 1148-1227 1-80 (80)
89 cd04097 mtEFG1_C mtEFG1_C: C-t 99.7 5.6E-18 1.2E-22 154.7 7.4 78 1148-1227 1-78 (78)
90 cd03711 Tet_C Tet_C: C-terminu 99.7 6.3E-18 1.4E-22 154.4 6.9 78 1148-1227 1-78 (78)
91 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.7 8.7E-18 1.9E-22 153.6 6.9 78 1148-1227 1-78 (78)
92 COG3276 SelB Selenocysteine-sp 99.7 6.9E-17 1.5E-21 184.6 13.9 104 402-525 2-107 (447)
93 PF14492 EFG_II: Elongation Fa 99.7 2.4E-17 5.2E-22 148.7 8.0 73 903-976 2-75 (75)
94 cd01885 EF2 EF2 (for archaea a 99.7 9.6E-17 2.1E-21 175.9 13.0 166 174-349 38-203 (222)
95 cd01514 Elongation_Factor_C El 99.7 2.7E-17 5.8E-22 150.8 7.3 79 1148-1227 1-79 (79)
96 PF03764 EFG_IV: Elongation fa 99.7 5.8E-17 1.3E-21 161.2 8.7 98 1040-1143 23-120 (120)
97 cd03710 BipA_TypA_C BipA_TypA_ 99.7 8.6E-17 1.9E-21 147.2 8.0 78 1148-1226 1-78 (79)
98 COG5256 TEF1 Translation elong 99.7 2.3E-16 5E-21 179.0 11.0 158 129-313 9-183 (428)
99 cd04167 Snu114p Snu114p subfam 99.6 1.1E-15 2.3E-20 167.9 12.9 128 401-530 1-131 (213)
100 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.3E-16 2.9E-21 174.4 5.6 123 402-530 1-138 (208)
101 KOG0462|consensus 99.6 2.5E-16 5.5E-21 181.9 7.7 168 177-413 100-270 (650)
102 cd03709 lepA_C lepA_C: This fa 99.6 6.3E-16 1.4E-20 141.7 7.1 78 1148-1226 1-79 (80)
103 cd04090 eEF2_II_snRNP Loc2 eEF 99.6 2.6E-15 5.6E-20 142.3 11.5 94 793-886 1-94 (94)
104 COG5258 GTPBP1 GTPase [General 99.6 7.6E-15 1.7E-19 162.7 16.7 276 402-872 119-418 (527)
105 cd01883 EF1_alpha Eukaryotic e 99.6 2.7E-16 5.9E-21 173.3 5.5 128 402-540 1-150 (219)
106 KOG1145|consensus 99.6 3.7E-15 8E-20 172.1 13.9 108 399-530 152-261 (683)
107 KOG0459|consensus 99.6 1E-15 2.2E-20 171.0 8.6 149 397-555 76-246 (501)
108 COG2895 CysN GTPases - Sulfate 99.6 2.1E-15 4.6E-20 166.3 8.8 124 167-314 54-178 (431)
109 COG0050 TufB GTPases - transla 99.6 4.3E-15 9.4E-20 159.7 10.6 111 177-312 53-164 (394)
110 PRK04004 translation initiatio 99.6 3.4E-14 7.3E-19 176.4 18.4 123 399-530 5-131 (586)
111 COG0532 InfB Translation initi 99.5 9E-14 2E-18 163.5 17.6 110 399-530 4-115 (509)
112 cd01884 EF_Tu EF-Tu subfamily. 99.5 3.2E-14 7E-19 153.5 12.1 130 175-346 41-171 (195)
113 PF00009 GTP_EFTU: Elongation 99.5 1.8E-14 4E-19 155.0 9.9 130 177-347 46-176 (188)
114 TIGR02034 CysN sulfate adenyly 99.5 4E-14 8.6E-19 169.9 12.1 137 168-347 49-186 (406)
115 cd01890 LepA LepA subfamily. 99.5 5.1E-14 1.1E-18 149.9 11.1 125 401-530 1-127 (179)
116 cd01858 NGP_1 NGP-1. Autoanti 99.5 8E-14 1.7E-18 145.5 11.0 152 232-480 2-157 (157)
117 COG0481 LepA Membrane GTPase L 99.5 1.6E-14 3.4E-19 164.6 5.5 94 177-281 49-142 (603)
118 PTZ00141 elongation factor 1- 99.5 8.1E-14 1.8E-18 168.5 12.0 141 167-346 53-201 (446)
119 KOG0461|consensus 99.5 3.6E-13 7.8E-18 147.3 13.7 113 401-524 8-126 (522)
120 PLN00043 elongation factor 1-a 99.5 1.6E-13 3.4E-18 165.8 12.0 125 166-312 52-184 (447)
121 KOG0460|consensus 99.5 1.3E-13 2.8E-18 151.1 10.1 115 172-313 92-207 (449)
122 cd03690 Tet_II Tet_II: This su 99.4 4.9E-13 1.1E-17 124.2 10.7 83 791-885 2-84 (85)
123 cd01888 eIF2_gamma eIF2-gamma 99.4 3.9E-13 8.4E-18 146.5 11.8 114 401-530 1-145 (203)
124 PF03764 EFG_IV: Elongation fa 99.4 1.3E-13 2.9E-18 137.1 7.1 76 118-197 22-97 (120)
125 cd03700 eEF2_snRNP_like_II EF2 99.4 9.7E-13 2.1E-17 124.5 11.4 85 793-877 1-85 (93)
126 TIGR00491 aIF-2 translation in 99.4 3.8E-12 8.3E-17 157.5 19.8 111 400-530 4-129 (590)
127 KOG0458|consensus 99.4 4.4E-13 9.5E-18 157.5 10.7 132 158-313 214-354 (603)
128 cd04092 mtEFG2_II_like mtEFG2_ 99.4 1.1E-12 2.3E-17 121.6 10.7 82 793-885 1-82 (83)
129 PRK05124 cysN sulfate adenylyl 99.4 6.1E-13 1.3E-17 162.1 11.8 178 128-347 28-214 (474)
130 cd01889 SelB_euk SelB subfamil 99.4 6.1E-13 1.3E-17 143.7 10.0 116 402-530 2-128 (192)
131 COG4108 PrfC Peptide chain rel 99.4 6.7E-13 1.5E-17 150.4 10.0 88 178-281 60-147 (528)
132 cd01680 EFG_like_IV Elongation 99.4 1.5E-12 3.3E-17 128.7 11.0 112 981-1143 1-116 (116)
133 TIGR01394 TypA_BipA GTP-bindin 99.4 8.6E-13 1.9E-17 164.0 10.9 130 175-346 40-169 (594)
134 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.6E-12 3.5E-17 142.2 11.7 133 172-347 50-183 (208)
135 cd01883 EF1_alpha Eukaryotic e 99.4 1.3E-12 2.8E-17 144.2 11.0 141 168-347 46-194 (219)
136 PLN03126 Elongation factor Tu; 99.4 1.4E-12 3.1E-17 158.0 12.1 114 174-312 119-233 (478)
137 cd01891 TypA_BipA TypA (tyrosi 99.4 5.7E-13 1.2E-17 144.1 7.5 123 399-530 1-125 (194)
138 cd01857 HSR1_MMR1 HSR1/MMR1. 99.4 4E-12 8.6E-17 130.3 13.3 51 230-280 3-55 (141)
139 cd04088 EFG_mtEFG_II EFG_mtEFG 99.4 3.3E-12 7.1E-17 118.4 10.6 82 793-885 1-82 (83)
140 KOG3079|consensus 99.4 9.5E-13 2E-17 134.6 7.3 101 617-720 89-192 (195)
141 PRK05506 bifunctional sulfate 99.4 1.8E-12 3.9E-17 164.4 11.6 176 129-347 26-210 (632)
142 CHL00071 tufA elongation facto 99.4 2.8E-12 6.1E-17 154.3 12.7 113 174-311 50-163 (409)
143 KOG0464|consensus 99.3 1.6E-13 3.5E-18 152.5 0.7 89 177-281 80-168 (753)
144 cd01886 EF-G Elongation factor 99.3 3.8E-12 8.3E-17 144.2 11.4 95 171-281 36-130 (270)
145 PRK12736 elongation factor Tu; 99.3 4.3E-12 9.3E-17 151.9 12.4 113 174-311 50-163 (394)
146 PRK10218 GTP-binding protein; 99.3 2.7E-12 5.8E-17 159.3 10.8 130 175-346 44-173 (607)
147 cd04167 Snu114p Snu114p subfam 99.3 8E-12 1.7E-16 137.3 13.1 128 174-312 41-168 (213)
148 cd01849 YlqF_related_GTPase Yl 99.3 1.4E-11 3E-16 128.3 12.3 154 240-480 1-155 (155)
149 PRK12317 elongation factor 1-a 99.3 6.4E-12 1.4E-16 152.4 11.1 139 168-347 53-194 (425)
150 COG1160 Predicted GTPases [Gen 99.3 6.9E-12 1.5E-16 145.6 10.6 106 401-530 4-120 (444)
151 PLN03127 Elongation factor Tu; 99.3 1E-11 2.2E-16 150.1 12.3 113 174-311 99-212 (447)
152 cd03689 RF3_II RF3_II: this su 99.3 1.5E-11 3.3E-16 114.0 10.3 81 795-886 1-84 (85)
153 PRK00049 elongation factor Tu; 99.3 1.1E-11 2.4E-16 148.4 12.0 113 174-311 50-163 (396)
154 TIGR00485 EF-Tu translation el 99.3 1.2E-11 2.6E-16 148.4 12.3 114 173-311 49-163 (394)
155 cd03691 BipA_TypA_II BipA_TypA 99.3 2E-11 4.4E-16 113.8 11.0 85 793-885 1-85 (86)
156 cd04091 mtEFG1_II_like mtEFG1_ 99.3 2.1E-11 4.6E-16 112.3 10.6 80 793-885 1-80 (81)
157 COG0532 InfB Translation initi 99.3 3.3E-12 7.2E-17 150.5 6.4 151 214-423 54-205 (509)
158 PRK10512 selenocysteinyl-tRNA- 99.3 2.7E-11 5.8E-16 151.6 14.3 130 174-347 25-155 (614)
159 PF14492 EFG_II: Elongation Fa 99.3 5.4E-12 1.2E-16 114.0 5.8 54 1-55 21-75 (75)
160 TIGR03596 GTPase_YlqF ribosome 99.3 1.5E-11 3.2E-16 140.4 10.6 56 223-280 5-61 (276)
161 cd01684 Tet_like_IV EF-G_domai 99.3 4.2E-11 9E-16 117.9 12.0 113 979-1143 1-115 (115)
162 cd01855 YqeH YqeH. YqeH is an 99.3 1.3E-11 2.8E-16 133.2 9.0 57 223-281 19-75 (190)
163 PRK12735 elongation factor Tu; 99.3 2.3E-11 5.1E-16 145.7 12.1 113 174-311 50-163 (396)
164 cd04165 GTPBP1_like GTPBP1-lik 99.2 6.4E-12 1.4E-16 138.6 6.1 123 402-530 1-146 (224)
165 KOG1145|consensus 99.2 9.5E-12 2.1E-16 144.3 7.5 165 183-421 184-349 (683)
166 cd01859 MJ1464 MJ1464. This f 99.2 4E-11 8.7E-16 125.0 11.6 49 232-280 6-54 (156)
167 cd04168 TetM_like Tet(M)-like 99.2 2.9E-11 6.2E-16 134.7 10.9 90 176-281 41-130 (237)
168 cd01856 YlqF YlqF. Proteins o 99.2 3E-11 6.5E-16 128.0 9.7 56 223-280 3-59 (171)
169 PTZ00327 eukaryotic translatio 99.2 4.5E-11 9.8E-16 144.1 11.9 104 176-281 61-185 (460)
170 PRK09563 rbgA GTPase YlqF; Rev 99.2 3.2E-11 6.9E-16 138.4 10.0 57 222-280 7-64 (287)
171 cd04178 Nucleostemin_like Nucl 99.2 6.5E-11 1.4E-15 125.1 10.5 42 240-281 1-44 (172)
172 TIGR00483 EF-1_alpha translati 99.2 6.6E-11 1.4E-15 143.6 11.4 141 166-347 52-196 (426)
173 COG1159 Era GTPase [General fu 99.2 6.9E-11 1.5E-15 130.5 9.8 104 400-525 6-119 (298)
174 PLN02674 adenylate kinase 99.2 1.2E-11 2.7E-16 136.5 3.9 96 616-711 110-232 (244)
175 TIGR00475 selB selenocysteine- 99.2 1.7E-10 3.6E-15 144.1 13.7 130 174-347 25-155 (581)
176 cd04165 GTPBP1_like GTPBP1-lik 99.1 1.4E-10 3.1E-15 128.0 11.0 87 214-310 83-171 (224)
177 cd04169 RF3 RF3 subfamily. Pe 99.1 1.3E-10 2.9E-15 131.6 10.6 89 177-281 49-137 (267)
178 cd00881 GTP_translation_factor 99.1 2.1E-10 4.5E-15 122.7 11.6 120 402-530 1-122 (189)
179 PRK14529 adenylate kinase; Pro 99.1 3.3E-11 7.2E-16 131.6 4.7 96 616-711 78-211 (223)
180 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.1 2.8E-10 6E-15 112.5 10.2 112 981-1143 1-116 (116)
181 PRK00741 prfC peptide chain re 99.1 1.8E-10 4E-15 141.6 10.4 89 177-281 57-145 (526)
182 cd03699 lepA_II lepA_II: This 99.1 4.5E-10 9.7E-15 104.7 10.2 81 793-885 1-85 (86)
183 PRK14845 translation initiatio 99.1 3.2E-09 6.9E-14 137.6 20.9 108 402-530 464-586 (1049)
184 TIGR00503 prfC peptide chain r 99.1 3.8E-10 8.2E-15 138.9 11.3 92 174-281 55-146 (527)
185 PLN02459 probable adenylate ki 99.1 5.9E-11 1.3E-15 131.6 3.6 92 616-711 110-238 (261)
186 cd01693 mtEFG2_like_IV mtEF-G2 99.1 6E-10 1.3E-14 110.8 10.4 116 979-1143 1-120 (120)
187 PRK12289 GTPase RsgA; Reviewed 99.1 6.3E-10 1.4E-14 130.0 12.0 148 235-481 86-235 (352)
188 PRK05433 GTP-binding protein L 99.1 3.5E-10 7.6E-15 141.5 10.4 97 174-281 44-140 (600)
189 COG0486 ThdF Predicted GTPase 99.0 1.8E-10 3.9E-15 134.3 6.2 104 402-530 219-332 (454)
190 COG3276 SelB Selenocysteine-sp 99.0 9E-10 2E-14 126.9 10.7 102 163-281 15-117 (447)
191 cd01891 TypA_BipA TypA (tyrosi 99.0 9.4E-10 2E-14 119.0 10.4 87 179-281 45-131 (194)
192 TIGR03597 GTPase_YqeH ribosome 99.0 1E-09 2.2E-14 129.7 11.4 164 227-481 52-215 (360)
193 KOG1191|consensus 99.0 2.7E-10 5.9E-15 131.9 6.2 105 399-525 267-382 (531)
194 PRK13796 GTPase YqeH; Provisio 99.0 1.8E-09 3.8E-14 127.9 12.9 163 227-481 58-221 (365)
195 PRK05306 infB translation init 99.0 1E-09 2.2E-14 139.3 11.5 68 214-281 336-403 (787)
196 TIGR01393 lepA GTP-binding pro 99.0 8.3E-10 1.8E-14 138.0 10.4 96 174-280 40-135 (595)
197 PRK14526 adenylate kinase; Pro 99.0 2.8E-10 6E-15 124.2 4.4 91 616-710 79-195 (211)
198 cd01889 SelB_euk SelB subfamil 99.0 4.6E-09 9.9E-14 113.5 13.6 100 179-281 34-134 (192)
199 cd01888 eIF2_gamma eIF2-gamma 99.0 3.9E-09 8.4E-14 115.1 12.8 108 174-281 25-151 (203)
200 PF02421 FeoB_N: Ferrous iron 98.9 2.2E-09 4.8E-14 110.7 8.4 125 402-558 2-137 (156)
201 cd04171 SelB SelB subfamily. 98.9 1.9E-09 4.1E-14 112.5 8.0 108 402-530 2-112 (164)
202 KOG1144|consensus 98.9 2.8E-09 6.1E-14 127.0 9.1 125 216-347 541-676 (1064)
203 TIGR03680 eif2g_arch translati 98.9 5.7E-09 1.2E-13 125.7 12.0 107 175-281 30-148 (406)
204 KOG0459|consensus 98.9 1.9E-09 4.2E-14 121.5 7.0 134 156-311 114-255 (501)
205 PRK14528 adenylate kinase; Pro 98.9 1E-09 2.3E-14 117.8 4.6 94 617-711 81-175 (186)
206 TIGR00487 IF-2 translation ini 98.9 4E-09 8.6E-14 131.2 10.3 66 216-281 136-201 (587)
207 TIGR00157 ribosome small subun 98.9 6.4E-09 1.4E-13 116.5 10.8 47 234-280 32-80 (245)
208 cd04170 EF-G_bact Elongation f 98.9 3.9E-09 8.4E-14 120.3 9.1 68 214-281 63-130 (268)
209 PRK09554 feoB ferrous iron tra 98.9 1.6E-08 3.5E-13 129.4 15.4 126 401-558 4-144 (772)
210 PRK13808 adenylate kinase; Pro 98.9 1.3E-09 2.7E-14 125.2 4.5 95 616-710 79-179 (333)
211 cd04171 SelB SelB subfamily. 98.9 2.2E-08 4.8E-13 104.4 13.5 67 215-281 51-118 (164)
212 PRK04004 translation initiatio 98.9 7.8E-09 1.7E-13 129.0 11.2 125 216-347 72-207 (586)
213 COG5257 GCD11 Translation init 98.8 8.2E-09 1.8E-13 113.4 9.1 140 177-347 38-191 (415)
214 cd01854 YjeQ_engC YjeQ/EngC. 98.8 9.4E-09 2E-13 117.9 9.8 47 235-281 75-123 (287)
215 TIGR01351 adk adenylate kinase 98.8 2E-09 4.4E-14 118.0 3.8 93 616-710 79-197 (210)
216 PRK12288 GTPase RsgA; Reviewed 98.8 1.8E-08 3.9E-13 117.9 11.4 46 236-281 118-164 (347)
217 cd01680 EFG_like_IV Elongation 98.8 7.4E-09 1.6E-13 102.4 6.6 89 60-197 1-93 (116)
218 PRK00098 GTPase RsgA; Reviewed 98.8 1.7E-08 3.6E-13 116.5 10.3 48 233-280 75-124 (298)
219 TIGR00491 aIF-2 translation in 98.8 1.8E-08 3.8E-13 125.3 10.9 125 216-347 70-205 (590)
220 CHL00189 infB translation init 98.8 1.1E-08 2.4E-13 128.9 9.1 68 214-281 294-361 (742)
221 PRK14845 translation initiatio 98.8 1.9E-08 4E-13 130.6 11.3 160 178-347 487-662 (1049)
222 PRK04000 translation initiatio 98.8 2.1E-08 4.6E-13 120.7 10.9 106 176-281 36-153 (411)
223 PF01926 MMR_HSR1: 50S ribosom 98.8 1.8E-08 3.9E-13 99.5 8.1 101 402-525 1-112 (116)
224 cd01890 LepA LepA subfamily. 98.8 2.2E-08 4.8E-13 106.5 9.1 93 177-280 40-132 (179)
225 PRK14531 adenylate kinase; Pro 98.8 4.5E-09 9.9E-14 112.6 3.8 90 617-711 81-171 (183)
226 cd01895 EngA2 EngA2 subfamily. 98.7 2E-08 4.3E-13 105.5 8.3 107 400-530 2-121 (174)
227 KOG0466|consensus 98.7 1.8E-08 4E-13 109.4 8.0 110 400-524 38-182 (466)
228 TIGR03594 GTPase_EngA ribosome 98.7 1.3E-08 2.8E-13 124.1 7.7 105 402-530 1-115 (429)
229 KOG0461|consensus 98.7 3.8E-08 8.2E-13 108.6 10.3 129 169-312 33-161 (522)
230 PTZ00088 adenylate kinase 1; P 98.7 7.1E-09 1.5E-13 114.4 4.7 86 616-705 87-209 (229)
231 PRK15494 era GTPase Era; Provi 98.7 1.8E-08 4E-13 118.2 7.4 108 399-530 51-168 (339)
232 cd01894 EngA1 EngA1 subfamily. 98.7 2E-08 4.2E-13 103.9 6.5 103 404-530 1-113 (157)
233 cd00881 GTP_translation_factor 98.7 5.3E-08 1.1E-12 104.1 10.0 68 214-281 61-128 (189)
234 TIGR00436 era GTP-binding prot 98.7 3.2E-08 6.9E-13 112.9 8.0 104 402-530 2-115 (270)
235 COG1161 Predicted GTPases [Gen 98.7 7.8E-08 1.7E-12 111.8 11.3 171 219-481 14-188 (322)
236 COG0563 Adk Adenylate kinase a 98.7 5.2E-08 1.1E-12 103.4 8.4 77 617-697 80-157 (178)
237 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 7.2E-08 1.6E-12 101.2 8.4 107 402-530 2-110 (168)
238 PRK14527 adenylate kinase; Pro 98.6 2.2E-08 4.9E-13 108.1 4.4 94 617-711 85-179 (191)
239 PRK14530 adenylate kinase; Pro 98.6 2.6E-08 5.6E-13 109.7 4.9 91 617-711 84-200 (215)
240 PRK00279 adk adenylate kinase; 98.6 2.3E-08 5E-13 110.1 4.2 94 617-710 80-200 (215)
241 PRK03003 GTP-binding protein D 98.6 7.5E-08 1.6E-12 118.4 8.8 108 399-530 37-154 (472)
242 PRK09518 bifunctional cytidyla 98.6 7.5E-08 1.6E-12 123.9 8.7 108 399-530 274-391 (712)
243 PRK00093 GTP-binding protein D 98.6 6.9E-08 1.5E-12 117.9 7.9 106 401-530 2-117 (435)
244 PRK14532 adenylate kinase; Pro 98.6 3.2E-08 6.9E-13 106.6 3.9 94 616-710 79-173 (188)
245 COG1159 Era GTPase [General fu 98.6 1.8E-07 3.8E-12 103.9 9.5 68 214-281 53-128 (298)
246 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 2.6E-07 5.7E-12 96.9 10.4 67 214-280 49-115 (168)
247 PRK00089 era GTPase Era; Revie 98.5 1E-07 2.2E-12 110.1 7.4 105 399-525 4-118 (292)
248 TIGR00450 mnmE_trmE_thdF tRNA 98.5 1.4E-07 3.1E-12 114.2 8.3 105 401-530 204-318 (442)
249 cd01852 AIG1 AIG1 (avrRpt2-ind 98.5 2.2E-07 4.7E-12 100.9 8.4 95 401-517 1-108 (196)
250 PRK05291 trmE tRNA modificatio 98.5 1.7E-07 3.6E-12 114.2 8.2 104 401-530 216-329 (449)
251 PF03144 GTP_EFTU_D2: Elongati 98.5 1.6E-07 3.5E-12 84.8 5.9 73 809-885 2-74 (74)
252 cd04164 trmE TrmE (MnmE, ThdF, 98.5 2.5E-07 5.4E-12 95.5 7.9 103 402-530 3-115 (157)
253 cd01684 Tet_like_IV EF-G_domai 98.5 2.4E-07 5.2E-12 91.3 7.1 91 58-198 1-93 (115)
254 TIGR01359 UMP_CMP_kin_fam UMP- 98.5 6.5E-08 1.4E-12 103.6 3.2 93 617-710 78-170 (183)
255 PLN02200 adenylate kinase fami 98.5 8E-08 1.7E-12 106.8 3.9 89 617-710 122-210 (234)
256 cd01879 FeoB Ferrous iron tran 98.5 3.9E-07 8.5E-12 94.4 8.7 99 405-530 1-109 (158)
257 cd01894 EngA1 EngA1 subfamily. 98.5 4.8E-07 1E-11 93.5 9.3 68 214-281 44-119 (157)
258 PRK09866 hypothetical protein; 98.5 5.5E-07 1.2E-11 109.1 10.9 67 214-280 229-302 (741)
259 TIGR03598 GTPase_YsxC ribosome 98.5 2.6E-07 5.7E-12 98.6 7.4 106 398-530 16-137 (179)
260 PRK01889 GTPase RsgA; Reviewed 98.5 4.1E-07 9E-12 107.4 9.5 46 236-281 110-156 (356)
261 KOG2423|consensus 98.4 7.8E-07 1.7E-11 100.2 10.6 157 228-481 203-363 (572)
262 PRK02496 adk adenylate kinase; 98.4 9.4E-08 2E-12 102.6 3.1 89 617-710 81-170 (184)
263 KOG1144|consensus 98.4 2.2E-06 4.8E-11 103.0 14.7 110 401-530 476-600 (1064)
264 cd01898 Obg Obg subfamily. Th 98.4 3.7E-07 8.1E-12 96.0 7.3 80 402-504 2-91 (170)
265 COG1162 Predicted GTPases [Gen 98.4 1.2E-06 2.6E-11 98.4 10.9 146 239-481 80-227 (301)
266 cd01882 BMS1 Bms1. Bms1 is an 98.4 5.4E-07 1.2E-11 99.9 7.5 103 400-530 39-141 (225)
267 cd01428 ADK Adenylate kinase ( 98.4 1.9E-07 4.2E-12 100.8 3.8 94 616-709 78-189 (194)
268 cd01434 EFG_mtEFG1_IV EFG_mtEF 98.4 6.2E-07 1.3E-11 88.7 7.0 89 60-197 1-93 (116)
269 cd04163 Era Era subfamily. Er 98.4 8.2E-07 1.8E-11 92.3 8.0 106 401-530 4-119 (168)
270 KOG2484|consensus 98.3 2.4E-06 5.3E-11 97.4 11.6 62 220-281 127-191 (435)
271 KOG1424|consensus 98.3 1.8E-06 3.9E-11 101.2 10.2 55 227-281 163-219 (562)
272 KOG0052|consensus 98.3 2.8E-07 6.1E-12 105.5 3.6 117 401-525 8-146 (391)
273 TIGR00231 small_GTP small GTP- 98.3 7.8E-07 1.7E-11 91.2 6.5 106 401-530 2-116 (161)
274 cd01895 EngA2 EngA2 subfamily. 98.3 4.2E-06 9.2E-11 87.7 11.6 68 214-281 49-127 (174)
275 TIGR00436 era GTP-binding prot 98.3 2.6E-06 5.7E-11 97.2 10.6 66 214-280 47-120 (270)
276 TIGR03156 GTP_HflX GTP-binding 98.3 8.7E-07 1.9E-11 104.4 6.8 85 399-505 188-282 (351)
277 cd01897 NOG NOG1 is a nucleola 98.3 1.6E-06 3.5E-11 91.0 8.2 81 401-504 1-92 (168)
278 KOG1143|consensus 98.3 1.2E-05 2.6E-10 90.1 14.8 118 402-524 169-307 (591)
279 cd04160 Arfrp1 Arfrp1 subfamil 98.3 1E-06 2.3E-11 92.4 6.2 84 402-504 1-86 (167)
280 KOG1423|consensus 98.3 1.4E-06 3.1E-11 95.8 7.0 84 398-503 70-167 (379)
281 PRK04213 GTP-binding protein; 98.3 2.4E-06 5.3E-11 92.8 8.8 103 399-530 8-138 (201)
282 TIGR03598 GTPase_YsxC ribosome 98.2 5.4E-06 1.2E-10 88.5 11.1 65 216-280 65-142 (179)
283 cd01882 BMS1 Bms1. Bms1 is an 98.2 5.1E-06 1.1E-10 92.1 10.8 64 214-280 82-146 (225)
284 PRK00454 engB GTP-binding prot 98.2 3E-06 6.5E-11 91.6 8.7 103 398-525 22-140 (196)
285 PLN02842 nucleotide kinase 98.2 7.1E-07 1.5E-11 107.6 4.1 88 616-708 77-186 (505)
286 COG2229 Predicted GTPase [Gene 98.2 1.1E-05 2.5E-10 83.3 10.7 68 214-281 67-135 (187)
287 KOG0463|consensus 98.1 2.5E-05 5.4E-10 87.5 13.5 118 402-525 135-278 (641)
288 PRK11058 GTPase HflX; Provisio 98.1 3.3E-06 7E-11 101.9 7.0 84 400-505 197-290 (426)
289 cd00880 Era_like Era (E. coli 98.1 5E-06 1.1E-10 85.2 7.4 103 405-530 1-112 (163)
290 cd04160 Arfrp1 Arfrp1 subfamil 98.1 5.6E-06 1.2E-10 86.9 7.8 68 214-281 49-121 (167)
291 PRK12298 obgE GTPase CgtA; Rev 98.1 5E-06 1.1E-10 99.1 7.5 79 402-502 161-248 (390)
292 PRK00089 era GTPase Era; Revie 98.1 1.3E-05 2.8E-10 92.6 10.8 67 214-280 52-126 (292)
293 cd01878 HflX HflX subfamily. 98.1 5.1E-06 1.1E-10 90.6 6.7 84 400-505 41-134 (204)
294 COG2229 Predicted GTPase [Gene 98.1 9.9E-06 2.1E-10 83.8 7.7 115 402-530 12-129 (187)
295 cd01693 mtEFG2_like_IV mtEF-G2 98.1 1E-05 2.2E-10 80.6 7.6 42 156-197 57-98 (120)
296 COG0370 FeoB Fe2+ transport sy 98.0 2.5E-05 5.5E-10 95.7 12.5 99 402-525 5-113 (653)
297 PRK15494 era GTPase Era; Provi 98.0 1.1E-05 2.4E-10 94.9 8.8 67 214-280 99-173 (339)
298 cd04114 Rab30 Rab30 subfamily. 98.0 9E-06 1.9E-10 85.5 7.3 85 397-504 4-92 (169)
299 KOG2485|consensus 98.0 1.7E-05 3.6E-10 88.4 9.3 59 221-281 28-87 (335)
300 COG0218 Predicted GTPase [Gene 98.0 1.3E-05 2.8E-10 84.8 8.1 98 401-525 25-140 (200)
301 cd01879 FeoB Ferrous iron tran 98.0 1.2E-05 2.6E-10 83.2 7.1 66 214-281 42-115 (158)
302 cd01861 Rab6 Rab6 subfamily. 98.0 1.4E-05 3.1E-10 83.2 7.6 82 402-504 2-85 (161)
303 cd04105 SR_beta Signal recogni 98.0 1.5E-05 3.3E-10 87.0 8.0 82 401-504 1-85 (203)
304 cd01864 Rab19 Rab19 subfamily. 98.0 1.5E-05 3.2E-10 83.6 7.6 85 400-505 3-89 (165)
305 TIGR02836 spore_IV_A stage IV 98.0 1.6E-05 3.4E-10 92.2 8.1 167 401-577 18-234 (492)
306 cd01881 Obg_like The Obg-like 98.0 1.4E-05 3E-10 84.4 7.1 77 405-504 1-87 (176)
307 cd04105 SR_beta Signal recogni 97.9 3.9E-05 8.5E-10 83.7 10.4 67 214-281 47-123 (203)
308 TIGR00437 feoB ferrous iron tr 97.9 2.8E-05 6.1E-10 97.8 10.3 120 407-558 1-131 (591)
309 cd00879 Sar1 Sar1 subfamily. 97.9 1.5E-05 3.3E-10 85.7 6.8 88 391-504 10-99 (190)
310 cd04113 Rab4 Rab4 subfamily. 97.9 1.7E-05 3.6E-10 82.7 6.8 83 402-505 2-86 (161)
311 cd04124 RabL2 RabL2 subfamily. 97.9 2.8E-05 6E-10 81.4 8.4 84 402-506 2-87 (161)
312 cd00878 Arf_Arl Arf (ADP-ribos 97.9 1.5E-05 3.4E-10 82.7 6.4 77 402-504 1-79 (158)
313 PRK15467 ethanolamine utilizat 97.9 9.1E-06 2E-10 85.0 4.6 76 401-510 2-83 (158)
314 PF01926 MMR_HSR1: 50S ribosom 97.9 2.6E-05 5.6E-10 76.9 7.3 62 214-276 46-116 (116)
315 cd01864 Rab19 Rab19 subfamily. 97.9 3.8E-05 8.2E-10 80.5 9.0 66 216-281 53-122 (165)
316 smart00178 SAR Sar1p-like memb 97.9 3E-05 6.6E-10 83.2 8.4 86 393-504 10-97 (184)
317 smart00053 DYNc Dynamin, GTPas 97.9 2.6E-05 5.7E-10 86.6 8.0 67 215-281 125-206 (240)
318 KOG3078|consensus 97.9 2.3E-06 5E-11 92.8 -0.4 91 616-709 94-210 (235)
319 cd04154 Arl2 Arl2 subfamily. 97.9 2.4E-05 5.2E-10 82.9 7.3 79 400-504 14-94 (173)
320 TIGR00991 3a0901s02IAP34 GTP-b 97.9 4.9E-05 1.1E-09 86.7 9.9 97 398-516 36-144 (313)
321 cd04151 Arl1 Arl1 subfamily. 97.9 2.4E-05 5.2E-10 81.4 7.0 77 402-504 1-79 (158)
322 TIGR01360 aden_kin_iso1 adenyl 97.9 6.5E-06 1.4E-10 88.4 2.7 89 617-709 84-172 (188)
323 cd01866 Rab2 Rab2 subfamily. 97.9 3E-05 6.5E-10 81.7 7.7 82 402-504 6-89 (168)
324 COG0486 ThdF Predicted GTPase 97.9 2.9E-05 6.4E-10 91.4 8.0 88 192-281 243-338 (454)
325 cd01853 Toc34_like Toc34-like 97.9 2.6E-05 5.6E-10 87.6 7.2 65 395-481 26-90 (249)
326 PRK12299 obgE GTPase CgtA; Rev 97.8 3.7E-05 8E-10 90.0 8.7 82 401-504 159-249 (335)
327 KOG0052|consensus 97.8 9.3E-06 2E-10 93.3 3.3 109 157-281 40-156 (391)
328 cd04145 M_R_Ras_like M-Ras/R-R 97.8 3.4E-05 7.4E-10 80.4 7.4 81 402-504 4-86 (164)
329 PTZ00258 GTP-binding protein; 97.8 1.9E-05 4.2E-10 93.3 6.0 90 397-504 18-128 (390)
330 PF02421 FeoB_N: Ferrous iron 97.8 1.7E-05 3.7E-10 82.1 4.8 66 214-281 46-119 (156)
331 cd01863 Rab18 Rab18 subfamily. 97.8 4E-05 8.6E-10 79.8 7.4 82 402-504 2-85 (161)
332 PRK12296 obgE GTPase CgtA; Rev 97.8 2.9E-05 6.4E-10 94.3 7.2 80 401-503 160-248 (500)
333 cd01860 Rab5_related Rab5-rela 97.8 4E-05 8.7E-10 79.9 7.2 82 402-504 3-86 (163)
334 KOG0466|consensus 97.8 3.4E-05 7.4E-10 84.5 6.6 82 200-281 110-193 (466)
335 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.8 4.7E-05 1E-09 81.6 7.4 82 402-504 5-88 (183)
336 TIGR02528 EutP ethanolamine ut 97.8 1.8E-05 3.8E-10 80.8 3.8 76 402-512 2-83 (142)
337 PRK12297 obgE GTPase CgtA; Rev 97.8 3.7E-05 8.1E-10 92.3 7.1 81 401-503 159-248 (424)
338 cd04137 RheB Rheb (Ras Homolog 97.8 3.3E-05 7.1E-10 82.3 6.0 83 401-505 2-86 (180)
339 cd00157 Rho Rho (Ras homology) 97.8 8.2E-05 1.8E-09 78.2 8.9 81 402-504 2-84 (171)
340 cd01342 Translation_Factor_II_ 97.8 0.00012 2.6E-09 66.4 8.9 71 794-876 2-72 (83)
341 cd00154 Rab Rab family. Rab G 97.8 3.5E-05 7.5E-10 79.2 6.0 82 402-504 2-85 (159)
342 cd04147 Ras_dva Ras-dva subfam 97.8 4.1E-05 8.9E-10 83.2 6.6 81 402-504 1-83 (198)
343 smart00173 RAS Ras subfamily o 97.8 4.6E-05 1E-09 79.6 6.8 81 402-504 2-84 (164)
344 PF00350 Dynamin_N: Dynamin fa 97.8 4.6E-05 1E-09 80.2 6.8 61 468-530 99-165 (168)
345 cd03698 eRF3_II_like eRF3_II_l 97.8 0.00016 3.5E-09 66.9 9.5 65 792-871 1-65 (83)
346 cd04115 Rab33B_Rab33A Rab33B/R 97.7 7.4E-05 1.6E-09 78.9 8.3 89 400-509 2-93 (170)
347 cd04151 Arl1 Arl1 subfamily. 97.7 5E-05 1.1E-09 79.0 6.9 68 214-281 42-114 (158)
348 cd01900 YchF YchF subfamily. 97.7 2.2E-05 4.7E-10 88.9 4.4 84 403-504 1-105 (274)
349 COG1084 Predicted GTPase [Gene 97.7 7.3E-05 1.6E-09 84.1 8.2 94 400-517 168-276 (346)
350 cd01896 DRG The developmentall 97.7 6.9E-05 1.5E-09 83.6 8.1 80 402-504 2-90 (233)
351 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.7 6.8E-05 1.5E-09 79.6 7.7 79 400-504 15-95 (174)
352 cd04157 Arl6 Arl6 subfamily. 97.7 4.4E-05 9.6E-10 79.4 6.1 79 402-504 1-81 (162)
353 cd04157 Arl6 Arl6 subfamily. 97.7 4.7E-05 1E-09 79.3 6.2 68 214-281 44-118 (162)
354 cd00877 Ran Ran (Ras-related n 97.7 9.7E-05 2.1E-09 77.8 8.7 83 402-505 2-86 (166)
355 cd01893 Miro1 Miro1 subfamily. 97.7 8E-05 1.7E-09 78.3 7.9 80 402-504 2-83 (166)
356 TIGR00231 small_GTP small GTP- 97.7 4E-05 8.8E-10 78.4 5.5 66 215-281 50-122 (161)
357 cd00880 Era_like Era (E. coli 97.7 9.6E-05 2.1E-09 75.6 8.2 67 215-281 45-118 (163)
358 PF09439 SRPRB: Signal recogni 97.7 9.9E-05 2.1E-09 78.1 8.1 67 214-281 48-126 (181)
359 PRK09601 GTP-binding protein Y 97.7 4.1E-05 8.9E-10 89.5 5.8 85 402-504 4-109 (364)
360 PLN03118 Rab family protein; P 97.7 5.9E-05 1.3E-09 82.8 6.8 81 402-504 16-98 (211)
361 smart00175 RAB Rab subfamily o 97.7 6.7E-05 1.5E-09 78.2 6.9 82 402-504 2-85 (164)
362 cd04142 RRP22 RRP22 subfamily. 97.7 0.00012 2.7E-09 79.5 9.1 82 402-504 2-93 (198)
363 cd01867 Rab8_Rab10_Rab13_like 97.7 9.1E-05 2E-09 77.9 7.8 84 400-504 3-88 (167)
364 cd04161 Arl2l1_Arl13_like Arl2 97.7 6.9E-05 1.5E-09 79.0 6.8 77 402-504 1-79 (167)
365 cd04164 trmE TrmE (MnmE, ThdF, 97.7 8.9E-05 1.9E-09 76.4 7.5 66 214-281 48-121 (157)
366 cd01850 CDC_Septin CDC/Septin. 97.7 0.00016 3.5E-09 82.6 10.3 111 402-524 6-147 (276)
367 TIGR00450 mnmE_trmE_thdF tRNA 97.7 8.9E-05 1.9E-09 90.1 8.5 82 198-281 235-324 (442)
368 PRK09554 feoB ferrous iron tra 97.7 9.4E-05 2E-09 95.4 9.1 66 214-281 49-126 (772)
369 cd04155 Arl3 Arl3 subfamily. 97.7 8.2E-05 1.8E-09 78.5 7.3 79 399-503 13-93 (173)
370 cd04135 Tc10 TC10 subfamily. 97.7 0.00012 2.7E-09 77.2 8.6 81 402-504 2-84 (174)
371 cd04145 M_R_Ras_like M-Ras/R-R 97.7 7.2E-05 1.6E-09 78.0 6.7 67 215-281 50-121 (164)
372 cd04177 RSR1 RSR1 subgroup. R 97.7 9.8E-05 2.1E-09 77.7 7.7 81 402-504 3-85 (168)
373 cd01868 Rab11_like Rab11-like. 97.7 9.9E-05 2.1E-09 77.3 7.6 83 401-504 4-88 (165)
374 cd01876 YihA_EngB The YihA (En 97.7 0.00012 2.5E-09 76.2 8.0 99 403-526 2-116 (170)
375 cd04138 H_N_K_Ras_like H-Ras/N 97.7 8.9E-05 1.9E-09 76.9 7.1 81 402-504 3-85 (162)
376 cd01863 Rab18 Rab18 subfamily. 97.6 0.0002 4.3E-09 74.5 9.6 66 215-280 49-119 (161)
377 PF00406 ADK: Adenylate kinase 97.6 3.6E-06 7.9E-11 87.3 -3.6 75 616-700 75-150 (151)
378 cd04146 RERG_RasL11_like RERG/ 97.6 8.7E-05 1.9E-09 77.8 6.8 81 402-504 1-84 (165)
379 PF04548 AIG1: AIG1 family; I 97.6 0.00015 3.2E-09 79.8 8.7 94 401-516 1-107 (212)
380 cd04163 Era Era subfamily. Er 97.6 0.00015 3.2E-09 75.2 8.3 66 215-280 51-124 (168)
381 cd04119 RJL RJL (RabJ-Like) su 97.6 8.6E-05 1.9E-09 77.5 6.4 82 402-504 2-85 (168)
382 cd04106 Rab23_lke Rab23-like s 97.6 0.00013 2.8E-09 76.0 7.8 84 402-504 2-87 (162)
383 TIGR02729 Obg_CgtA Obg family 97.6 9.2E-05 2E-09 86.6 7.3 81 401-503 158-247 (329)
384 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 0.00016 3.5E-09 76.7 8.6 68 214-281 58-130 (174)
385 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.6 9.7E-05 2.1E-09 79.2 6.8 67 214-280 51-122 (183)
386 smart00175 RAB Rab subfamily o 97.6 0.00033 7.2E-09 72.9 10.7 66 216-281 50-119 (164)
387 cd04147 Ras_dva Ras-dva subfam 97.6 0.00013 2.7E-09 79.4 7.7 67 215-281 47-118 (198)
388 COG5258 GTPBP1 GTPase [General 97.6 0.00026 5.5E-09 80.4 10.1 87 214-310 200-288 (527)
389 cd04140 ARHI_like ARHI subfami 97.6 0.00014 3.1E-09 76.2 7.9 81 402-504 3-85 (165)
390 cd04175 Rap1 Rap1 subgroup. T 97.6 0.00011 2.3E-09 77.0 6.9 81 402-504 3-85 (164)
391 PTZ00369 Ras-like protein; Pro 97.6 0.00011 2.3E-09 79.2 7.0 81 402-504 7-89 (189)
392 cd01860 Rab5_related Rab5-rela 97.6 0.00027 5.9E-09 73.6 9.7 66 215-280 50-119 (163)
393 PRK05291 trmE tRNA modificatio 97.6 0.00011 2.4E-09 89.8 7.6 82 197-281 246-335 (449)
394 PRK12298 obgE GTPase CgtA; Rev 97.6 0.00031 6.6E-09 84.1 11.0 66 215-280 207-288 (390)
395 cd01862 Rab7 Rab7 subfamily. 97.6 0.00011 2.4E-09 77.3 6.4 82 402-504 2-85 (172)
396 cd04124 RabL2 RabL2 subfamily. 97.6 0.00012 2.6E-09 76.6 6.6 66 215-280 49-117 (161)
397 smart00178 SAR Sar1p-like memb 97.6 0.00017 3.7E-09 77.4 8.0 67 214-280 60-131 (184)
398 PRK15467 ethanolamine utilizat 97.6 9.3E-05 2E-09 77.4 5.8 60 219-280 41-104 (158)
399 cd04158 ARD1 ARD1 subfamily. 97.6 0.00012 2.7E-09 77.2 6.8 77 402-504 1-79 (169)
400 cd00878 Arf_Arl Arf (ADP-ribos 97.6 0.00011 2.4E-09 76.2 6.1 67 215-281 43-114 (158)
401 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.5 0.00014 2.9E-09 76.4 6.7 82 401-503 3-86 (166)
402 cd04154 Arl2 Arl2 subfamily. 97.5 0.00013 2.8E-09 77.2 6.6 68 214-281 57-129 (173)
403 cd04161 Arl2l1_Arl13_like Arl2 97.5 0.00018 4E-09 75.8 7.6 68 214-281 42-114 (167)
404 smart00174 RHO Rho (Ras homolo 97.5 0.00021 4.6E-09 75.5 8.0 80 403-504 1-82 (174)
405 cd04156 ARLTS1 ARLTS1 subfamil 97.5 0.00016 3.4E-09 75.2 6.9 78 402-504 1-80 (160)
406 cd04149 Arf6 Arf6 subfamily. 97.5 0.00015 3.2E-09 76.7 6.7 78 401-504 10-89 (168)
407 cd03693 EF1_alpha_II EF1_alpha 97.5 0.00041 8.8E-09 65.5 8.7 68 790-871 2-69 (91)
408 cd04104 p47_IIGP_like p47 (47- 97.5 0.00018 3.9E-09 78.2 7.2 103 402-525 3-112 (197)
409 cd00882 Ras_like_GTPase Ras-li 97.5 8.9E-05 1.9E-09 74.8 4.5 86 405-511 1-88 (157)
410 cd01893 Miro1 Miro1 subfamily. 97.5 0.00018 3.8E-09 75.7 6.9 68 214-281 46-117 (166)
411 cd01870 RhoA_like RhoA-like su 97.5 0.0003 6.6E-09 74.3 8.7 81 401-503 2-84 (175)
412 cd01898 Obg Obg subfamily. Th 97.5 0.00022 4.8E-09 74.9 7.5 66 216-281 49-128 (170)
413 cd04118 Rab24 Rab24 subfamily. 97.5 0.0003 6.4E-09 75.9 8.7 83 402-504 2-86 (193)
414 cd04139 RalA_RalB RalA/RalB su 97.5 0.00017 3.8E-09 75.0 6.6 81 402-504 2-84 (164)
415 cd04136 Rap_like Rap-like subf 97.5 0.0002 4.4E-09 74.5 7.0 103 402-526 3-112 (163)
416 cd01850 CDC_Septin CDC/Septin. 97.5 0.0015 3.2E-08 74.8 14.4 84 216-310 64-176 (276)
417 cd00876 Ras Ras family. The R 97.5 0.00013 2.9E-09 75.4 5.4 78 402-503 1-82 (160)
418 cd01861 Rab6 Rab6 subfamily. 97.5 0.00066 1.4E-08 70.5 10.7 65 216-280 50-118 (161)
419 cd01897 NOG NOG1 is a nucleola 97.5 0.00038 8.3E-09 73.0 8.9 68 214-281 46-127 (168)
420 cd04123 Rab21 Rab21 subfamily. 97.5 0.00028 6.1E-09 73.1 7.8 104 402-526 2-111 (162)
421 cd04130 Wrch_1 Wrch-1 subfamil 97.5 0.00039 8.4E-09 73.6 9.0 93 402-516 2-98 (173)
422 TIGR03156 GTP_HflX GTP-binding 97.5 0.00024 5.3E-09 83.9 8.0 80 201-280 223-314 (351)
423 cd04159 Arl10_like Arl10-like 97.5 0.00017 3.7E-09 74.1 6.1 77 403-504 2-80 (159)
424 COG0218 Predicted GTPase [Gene 97.5 0.00056 1.2E-08 72.6 9.8 67 215-281 70-149 (200)
425 cd04162 Arl9_Arfrp2_like Arl9/ 97.4 0.00027 5.9E-09 74.3 7.3 68 214-281 43-113 (164)
426 TIGR00437 feoB ferrous iron tr 97.4 0.00027 5.8E-09 89.1 8.5 66 214-281 40-113 (591)
427 cd01881 Obg_like The Obg-like 97.4 0.00027 5.9E-09 74.5 7.2 68 214-281 43-134 (176)
428 cd04162 Arl9_Arfrp2_like Arl9/ 97.4 0.00029 6.3E-09 74.1 7.3 77 403-504 2-80 (164)
429 smart00176 RAN Ran (Ras-relate 97.4 0.00054 1.2E-08 74.6 9.5 66 215-280 44-112 (200)
430 PRK00454 engB GTP-binding prot 97.4 0.00086 1.9E-08 72.3 11.0 67 215-281 70-149 (196)
431 cd04112 Rab26 Rab26 subfamily. 97.4 0.00024 5.2E-09 76.7 6.6 82 402-503 2-85 (191)
432 cd01865 Rab3 Rab3 subfamily. 97.4 0.00025 5.5E-09 74.4 6.3 79 402-503 3-85 (165)
433 cd04134 Rho3 Rho3 subfamily. 97.4 0.00054 1.2E-08 73.8 8.9 82 401-504 1-84 (189)
434 COG5192 BMS1 GTP-binding prote 97.4 0.00022 4.7E-09 83.6 6.1 101 402-529 71-171 (1077)
435 cd04156 ARLTS1 ARLTS1 subfamil 97.4 0.00034 7.3E-09 72.8 7.1 67 215-281 44-115 (160)
436 TIGR02528 EutP ethanolamine ut 97.4 0.00019 4.1E-09 73.2 4.8 60 218-280 38-101 (142)
437 cd04114 Rab30 Rab30 subfamily. 97.4 0.00027 6E-09 74.1 6.2 65 216-280 57-125 (169)
438 cd04149 Arf6 Arf6 subfamily. 97.4 0.00034 7.4E-09 73.9 6.9 67 214-280 52-123 (168)
439 cd04115 Rab33B_Rab33A Rab33B/R 97.4 0.0012 2.5E-08 69.8 10.8 67 215-281 51-123 (170)
440 cd00879 Sar1 Sar1 subfamily. 97.3 0.00025 5.4E-09 76.2 5.8 68 214-281 62-134 (190)
441 cd04139 RalA_RalB RalA/RalB su 97.3 0.00032 6.9E-09 73.0 6.1 67 215-281 48-119 (164)
442 cd04110 Rab35 Rab35 subfamily. 97.3 0.00041 8.9E-09 75.4 7.2 84 400-504 6-91 (199)
443 PRK11058 GTPase HflX; Provisio 97.3 0.00052 1.1E-08 83.1 8.6 81 200-280 230-322 (426)
444 cd04106 Rab23_lke Rab23-like s 97.3 0.00037 8E-09 72.5 6.4 67 215-281 51-120 (162)
445 cd04158 ARD1 ARD1 subfamily. 97.3 0.00036 7.8E-09 73.7 6.4 67 214-280 42-113 (169)
446 cd00154 Rab Rab family. Rab G 97.3 0.00041 8.9E-09 71.2 6.7 66 215-280 49-118 (159)
447 PRK13768 GTPase; Provisional 97.3 0.00057 1.2E-08 77.2 8.3 67 215-281 97-176 (253)
448 PLN00223 ADP-ribosylation fact 97.3 0.00057 1.2E-08 73.2 7.9 68 214-281 60-132 (181)
449 smart00173 RAS Ras subfamily o 97.3 0.0004 8.6E-09 72.5 6.6 67 215-281 48-119 (164)
450 PF10662 PduV-EutP: Ethanolami 97.3 0.00022 4.7E-09 72.4 4.3 72 400-506 1-78 (143)
451 cd04132 Rho4_like Rho4-like su 97.3 0.00063 1.4E-08 72.9 8.2 105 401-526 1-111 (187)
452 cd04176 Rap2 Rap2 subgroup. T 97.3 0.00045 9.8E-09 72.1 6.9 80 402-503 3-84 (163)
453 PTZ00133 ADP-ribosylation fact 97.3 0.00036 7.8E-09 74.8 6.2 68 214-281 60-132 (182)
454 cd00882 Ras_like_GTPase Ras-li 97.3 0.00037 8E-09 70.3 6.0 68 214-281 44-116 (157)
455 cd04113 Rab4 Rab4 subfamily. 97.3 0.00036 7.7E-09 72.7 5.9 67 215-281 49-119 (161)
456 cd04101 RabL4 RabL4 (Rab-like4 97.3 0.00062 1.3E-08 71.1 7.7 85 402-504 2-88 (164)
457 PTZ00369 Ras-like protein; Pro 97.3 0.00036 7.9E-09 75.1 6.1 65 216-280 54-123 (189)
458 cd04122 Rab14 Rab14 subfamily. 97.3 0.00043 9.2E-09 72.7 6.5 80 402-503 4-86 (166)
459 cd04089 eRF3_II eRF3_II: domai 97.3 0.0014 3E-08 60.5 9.1 64 792-871 1-64 (82)
460 cd04127 Rab27A Rab27a subfamil 97.3 0.00074 1.6E-08 71.8 8.3 112 397-526 1-126 (180)
461 cd01878 HflX HflX subfamily. 97.3 0.00062 1.3E-08 74.2 7.7 66 216-281 90-167 (204)
462 PRK04213 GTP-binding protein; 97.3 0.00054 1.2E-08 74.4 7.2 66 216-281 53-144 (201)
463 cd04144 Ras2 Ras2 subfamily. 97.2 0.00039 8.5E-09 74.9 5.8 80 402-503 1-82 (190)
464 PF08477 Miro: Miro-like prote 97.2 0.00053 1.1E-08 67.6 6.3 103 402-526 1-114 (119)
465 cd04140 ARHI_like ARHI subfami 97.2 0.00069 1.5E-08 71.1 7.5 67 215-281 49-122 (165)
466 PLN03071 GTP-binding nuclear p 97.2 0.00086 1.9E-08 74.1 8.5 83 401-504 14-98 (219)
467 PTZ00133 ADP-ribosylation fact 97.2 0.00049 1.1E-08 73.7 6.3 77 401-503 18-96 (182)
468 cd01866 Rab2 Rab2 subfamily. 97.2 0.00091 2E-08 70.4 8.2 66 216-281 54-123 (168)
469 cd04107 Rab32_Rab38 Rab38/Rab3 97.2 0.00062 1.3E-08 74.1 7.2 80 402-503 2-85 (201)
470 cd04125 RabA_like RabA-like su 97.2 0.00053 1.2E-08 73.7 6.6 82 402-504 2-85 (188)
471 PTZ00099 rab6; Provisional 97.2 0.00063 1.4E-08 72.5 7.0 66 215-280 29-98 (176)
472 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.2 0.0013 2.9E-08 68.8 9.3 67 215-281 51-121 (166)
473 cd04150 Arf1_5_like Arf1-Arf5- 97.2 0.00056 1.2E-08 71.5 6.3 76 402-503 2-79 (159)
474 cd04150 Arf1_5_like Arf1-Arf5- 97.2 0.00064 1.4E-08 71.1 6.7 67 215-281 44-115 (159)
475 cd04126 Rab20 Rab20 subfamily. 97.2 0.0007 1.5E-08 74.8 7.2 77 402-504 2-80 (220)
476 cd04177 RSR1 RSR1 subgroup. R 97.2 0.00055 1.2E-08 72.0 6.2 67 215-281 49-120 (168)
477 PLN03108 Rab family protein; P 97.2 0.00069 1.5E-08 74.4 7.2 85 399-504 5-91 (210)
478 COG1163 DRG Predicted GTPase [ 97.2 0.0012 2.6E-08 74.2 8.9 81 402-505 65-154 (365)
479 PLN03118 Rab family protein; P 97.2 0.0011 2.3E-08 72.9 8.6 67 215-281 62-134 (211)
480 PRK12296 obgE GTPase CgtA; Rev 97.2 0.0014 3E-08 80.1 10.2 68 214-281 205-298 (500)
481 cd04159 Arl10_like Arl10-like 97.2 0.0008 1.7E-08 69.1 7.1 67 215-281 44-115 (159)
482 smart00177 ARF ARF-like small 97.2 0.0011 2.4E-08 70.5 8.3 67 215-281 57-128 (175)
483 cd04119 RJL RJL (RabJ-Like) su 97.2 0.00064 1.4E-08 70.9 6.4 66 215-280 49-123 (168)
484 cd04116 Rab9 Rab9 subfamily. 97.2 0.00081 1.8E-08 70.7 7.2 92 402-515 7-101 (170)
485 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.2 0.00062 1.4E-08 72.2 6.3 66 216-281 51-121 (172)
486 cd04110 Rab35 Rab35 subfamily. 97.2 0.0024 5.1E-08 69.5 10.9 66 216-281 56-124 (199)
487 cd04148 RGK RGK subfamily. Th 97.2 0.00095 2.1E-08 73.9 7.9 83 402-504 2-85 (221)
488 cd01862 Rab7 Rab7 subfamily. 97.2 0.00075 1.6E-08 70.9 6.8 66 216-281 50-123 (172)
489 cd04138 H_N_K_Ras_like H-Ras/N 97.1 0.00077 1.7E-08 69.8 6.7 66 216-281 50-120 (162)
490 cd04137 RheB Rheb (Ras Homolog 97.1 0.0006 1.3E-08 72.5 6.0 67 215-281 49-120 (180)
491 cd01852 AIG1 AIG1 (avrRpt2-ind 97.1 0.0018 3.9E-08 70.3 9.7 67 214-281 48-130 (196)
492 cd04135 Tc10 TC10 subfamily. 97.1 0.00039 8.4E-09 73.4 4.4 66 216-281 49-118 (174)
493 PF09439 SRPRB: Signal recogni 97.1 0.00046 1E-08 73.1 4.8 79 401-503 4-87 (181)
494 cd04101 RabL4 RabL4 (Rab-like4 97.1 0.002 4.3E-08 67.2 9.6 67 215-281 52-121 (164)
495 cd04111 Rab39 Rab39 subfamily. 97.1 0.0008 1.7E-08 73.9 6.8 82 402-503 4-87 (211)
496 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.1 0.001 2.2E-08 70.5 7.4 83 402-506 4-88 (172)
497 cd01867 Rab8_Rab10_Rab13_like 97.1 0.0015 3.2E-08 68.7 8.2 66 216-281 53-122 (167)
498 PLN00223 ADP-ribosylation fact 97.1 0.00079 1.7E-08 72.1 6.1 78 401-504 18-97 (181)
499 cd04146 RERG_RasL11_like RERG/ 97.1 0.001 2.2E-08 69.7 6.9 66 216-281 48-120 (165)
500 cd04108 Rab36_Rab34 Rab34/Rab3 97.1 0.00085 1.8E-08 71.0 6.3 80 402-503 2-84 (170)
No 1
>KOG0468|consensus
Probab=100.00 E-value=1.9e-158 Score=1350.53 Aligned_cols=804 Identities=70% Similarity=1.133 Sum_probs=755.5
Q ss_pred ccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceE
Q psy15088 324 DSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNV 403 (1291)
Q Consensus 324 ~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI 403 (1291)
...+++|||||+||+||.+.||.++|++++++|.|++.+|+++|++.++|...++++|++.|+.+|+..||++|+++|||
T Consensus 52 ~~~~vvLhedK~yypsaeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irnV 131 (971)
T KOG0468|consen 52 PQNAVVLHEDKKYYPSAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRNV 131 (971)
T ss_pred ccceeeeccccccCcccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcccc
Q psy15088 404 ALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVT 483 (1291)
Q Consensus 404 ~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~ 483 (1291)
+++||.|||||+|.++|+.+++.-.+ ...+...+|+|.+..|+|||.||++.++++..++.+++++.+|++|||||.+|
T Consensus 132 ~l~GhLhhGKT~l~D~Lv~~tHp~~~-~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF 210 (971)
T KOG0468|consen 132 GLVGHLHHGKTALMDLLVEQTHPDFS-KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF 210 (971)
T ss_pred EEeeccccChhHHHHhhceecccccc-ccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccc
Confidence 99999999999999999999984332 23456789999999999999999999999999999999999999999999655
Q ss_pred c--ccccccccceEEEEe--------------------------------------------------------------
Q psy15088 484 L--LLPDVKGKNYLMNIF-------------------------------------------------------------- 499 (1291)
Q Consensus 484 ~--~l~~~~~ad~~v~vi-------------------------------------------------------------- 499 (1291)
. +..++..+|++|+++
T Consensus 211 ~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is~ 290 (971)
T KOG0468|consen 211 SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLIST 290 (971)
T ss_pred hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhhh
Confidence 4 333333445666644
Q ss_pred --------------------------------------------------cCCCc--cchhhHhhHHHHHhhcCccchhh
Q psy15088 500 --------------------------------------------------DTPGM--WDIHVRKFSKKAAHASAQRSFVE 527 (1291)
Q Consensus 500 --------------------------------------------------da~~g--~~~qt~~~~~~~~~~~~~~~fv~ 527 (1291)
.+||+ |+..|+++.+.......+|.||+
T Consensus 291 ~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rsFVe 370 (971)
T KOG0468|consen 291 FSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRSFVE 370 (971)
T ss_pred cccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcccchhhh
Confidence 34555 35666666666666667899999
Q ss_pred hhhhHHHHHHHHhhCCccCcHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEc
Q psy15088 528 FVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDL 607 (1291)
Q Consensus 528 fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDl 607 (1291)
|||+|+||++.++..+.+.+++.+++.||+.+++++++++++|+|+.+|+
T Consensus 371 FILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~------------------------------ 420 (971)
T KOG0468|consen 371 FILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCK------------------------------ 420 (971)
T ss_pred hhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999999987
Q ss_pred ccccccccCceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccc
Q psy15088 608 ITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNT 687 (1291)
Q Consensus 608 l~~~~i~~~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~ 687 (1291)
.|+
T Consensus 421 ---------~ff-------------------------------------------------------------------- 423 (971)
T KOG0468|consen 421 ---------SFF-------------------------------------------------------------------- 423 (971)
T ss_pred ---------Hhc--------------------------------------------------------------------
Confidence 111
Q ss_pred cccceEEeecchhhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccc
Q psy15088 688 ETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETK 767 (1291)
Q Consensus 688 ~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1291)
.-...+.||+++|+|||.+.++.++...|.|+.
T Consensus 424 ------------------g~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~----------------------------- 456 (971)
T KOG0468|consen 424 ------------------GIESGFVDMPVEHIPSPRENAARKAEHSYTGTK----------------------------- 456 (971)
T ss_pred ------------------cchhhhhHhhHhhcCChhhhhccccceeecCCC-----------------------------
Confidence 012356799999999999988877777777754
Q ss_pred cccccCCCCCchhhhhhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEc
Q psy15088 768 VSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVG 847 (1291)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~ 847 (1291)
++.+...|..|++.+|++++++|+++..+...|.+|+||+||+++.|+.|.+++.+|+..+.++...+.|+
T Consensus 457 ---------~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~ 527 (971)
T KOG0468|consen 457 ---------DSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVG 527 (971)
T ss_pred ---------cchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceeeeee
Confidence 67788999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred eEEEEecCceeeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHH
Q psy15088 848 RLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLR 927 (1291)
Q Consensus 848 ~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~ 927 (1291)
+++++.+|+..+|++|+||++|.|.|+++.+.||+|+.+....+....|+|++|...||+++++||.||+++|||++||+
T Consensus 528 el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~nPsELPKmldgLr 607 (971)
T KOG0468|consen 528 ELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLNPSELPKMLDGLR 607 (971)
T ss_pred eeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccCChhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999987777889999999999999999999999999999999999
Q ss_pred HHHHhCCceeEEECcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEE
Q psy15088 928 KVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMI 1007 (1291)
Q Consensus 928 ~L~~~DPsl~v~~~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~ 1007 (1291)
+.++.+|.+..++||+|||+|.|.|||+|+|+++|||..|+.|+|++++|.|.|+||+.++++.+|++++|||+|+|+|.
T Consensus 608 KinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfaetpnkknkItmi 687 (971)
T KOG0468|consen 608 KINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAETPNKKNKITMI 687 (971)
T ss_pred hhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhccCCCccCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHH
Q psy15088 1008 AEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQ 1087 (1291)
Q Consensus 1008 ~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~ 1087 (1291)
+||++.++.+++++|++.+.|+.++++++|+.+|+||.+++|+||||||+.+|||||+|+|+|.+++++++..++++|++
T Consensus 688 aEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk~ll~~vkesivQ 767 (971)
T KOG0468|consen 688 AEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQ 767 (971)
T ss_pred echhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHH
Q psy15088 1088 GFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 1167 (1291)
Q Consensus 1088 Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~ 1167 (1291)
||||++++||||+||+++|+|+|.|+.+.++++||++||+||+|||+||.||+.|.||||||+|.|||++|.+++..||+
T Consensus 768 GFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~ 847 (971)
T KOG0468|consen 768 GFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYT 847 (971)
T ss_pred HHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCCCCccc
Q psy15088 1168 VLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATH 1247 (1291)
Q Consensus 1168 ~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~~~~~~ 1247 (1291)
+|++|||+|++..+.+||++++|+|++||.|||||.+|||.+|+|+|+|++.|+||++|||||+|+.+..++||+++.++
T Consensus 848 vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~ 927 (971)
T KOG0468|consen 848 VLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDPLDKSIAIRPLEPAPIRH 927 (971)
T ss_pred HHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCCCCccccccccccCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCccccCCHHHHHHHHhcCccccCCC
Q psy15088 1248 LAREFMIKTRRRKGLSEDVSINKFFDDPMLLELARQDVMLNYPL 1291 (1291)
Q Consensus 1248 ~a~~~~~~iR~rKGl~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 1291 (1291)
+||+||.|+||||||+++++.++|||+.|+.+|++|++.++||+
T Consensus 928 LaReFmiKTRRRKGlsedvS~~kffd~~m~~eL~~q~~~~~l~~ 971 (971)
T KOG0468|consen 928 LAREFMIKTRRRKGLSEDVSINKFFDDPMLLELAKQDVVLGLPM 971 (971)
T ss_pred hHHHHHHHhhhhcccccccccCcccchHHHHHHHHhhhhcCCCC
Confidence 99999999999999999999999999999999999999999995
No 2
>KOG0469|consensus
Probab=100.00 E-value=2.6e-152 Score=1263.97 Aligned_cols=777 Identities=38% Similarity=0.666 Sum_probs=689.8
Q ss_pred cCCCCCcccccceeEEecccccCCCccc-cccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIY-CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~-~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~ 252 (1291)
++.-.+|+.||||++-+-++++..-.-. ........+- ++.-+||||+|||+||++++.+|++..|++|+|||+.+|+
T Consensus 57 ~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~-~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~Gv 135 (842)
T KOG0469|consen 57 TDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG-NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV 135 (842)
T ss_pred cccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC-cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCce
Confidence 4456789999999998887777331100 0111111111 1567999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhccc
Q psy15088 253 MLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHE 332 (1291)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 332 (1291)
+.||+.+++++-.+++++++|+||+|+..+|+++..++.|+.|++++|.+|.+++.+|-+.. ++..
T Consensus 136 CVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~--------g~~~------ 201 (842)
T KOG0469|consen 136 CVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPM--------GDVQ------ 201 (842)
T ss_pred EechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCc--------CceE------
Confidence 99999999999999999999999999999999999999999999999999999998873211 1100
Q ss_pred CcccccCccc-ccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCC
Q psy15088 333 DKRYYPTAVE-VFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHH 411 (1291)
Q Consensus 333 ~~~~~~sa~~-~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~ 411 (1291)
++|+-.+ +||. .+..|.|..
T Consensus 202 ---v~P~kg~v~F~S--------------------------------GLhGWaFTl------------------------ 222 (842)
T KOG0469|consen 202 ---VDPEKGTVGFGS--------------------------------GLHGWAFTL------------------------ 222 (842)
T ss_pred ---ecCCCCceeecc--------------------------------ccchhhhhH------------------------
Confidence 1111111 1222 222333322
Q ss_pred ChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcccccccccccc
Q psy15088 412 GKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKG 491 (1291)
Q Consensus 412 GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~~l~~~~~ 491 (1291)
-.|+++++.+.+.... .+ +
T Consensus 223 --rQFa~~Y~~KF~~~~~--------------------km------m--------------------------------- 241 (842)
T KOG0469|consen 223 --RQFAEMYAKKFGIDVR--------------------KM------M--------------------------------- 241 (842)
T ss_pred --HHHHHHHHHHhCCcHH--------------------HH------H---------------------------------
Confidence 2467777777643110 00 0
Q ss_pred cceEEEEecCCCc--cchhhHhhHHHHH---hhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCCcChhhhhc
Q psy15088 492 KNYLMNIFDTPGM--WDIHVRKFSKKAA---HASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKI 566 (1291)
Q Consensus 492 ad~~v~vida~~g--~~~qt~~~~~~~~---~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l~~~~~~~ 566 (1291)
+ .+|++ +++.|++|...+. .+..+|.||+|||+||||++|.+++...+.+..+++++++.+...+..+
T Consensus 242 -~------~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~ 314 (842)
T KOG0469|consen 242 -N------RLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDL 314 (842)
T ss_pred -H------HhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccc
Confidence 1 45555 4666776665543 2446789999999999999999998888889999999999888887778
Q ss_pred CchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHHHHHHHHHHh
Q psy15088 567 NIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYV 646 (1291)
Q Consensus 567 ~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v 646 (1291)
..+++++.+|+ .|+
T Consensus 315 eGK~LlK~vMr---------------------------------------~wL--------------------------- 328 (842)
T KOG0469|consen 315 EGKALLKVVMR---------------------------------------KWL--------------------------- 328 (842)
T ss_pred cchHHHHHHHH---------------------------------------Hhc---------------------------
Confidence 88999888886 333
Q ss_pred hhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHHHhhCCCCccch
Q psy15088 647 LFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENA 726 (1291)
Q Consensus 647 ~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~ 726 (1291)
++...||+||+-|||||..+|
T Consensus 329 -----------------------------------------------------------PAadallemIalhLPSPvtaQ 349 (842)
T KOG0469|consen 329 -----------------------------------------------------------PAADALLEMIALHLPSPVTAQ 349 (842)
T ss_pred -----------------------------------------------------------chHHHHHHHHHhhCCCchHHH
Confidence 566789999999999999999
Q ss_pred hhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEEEEeeccCCCC
Q psy15088 727 ETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEEC 806 (1291)
Q Consensus 727 ~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~ 806 (1291)
++|...+|.||. |++.+.++++||+++|+++||+||.++.++
T Consensus 350 kyR~e~LYEGP~--------------------------------------DDe~a~aik~CD~~aplmmYvSKMvPtsDk 391 (842)
T KOG0469|consen 350 KYRAEYLYEGPA--------------------------------------DDEAAVAIKNCDPKAPLMMYVSKMVPTSDK 391 (842)
T ss_pred HHHHHHhhcCCC--------------------------------------chHHhhHhhccCCCCCeEEeeeeccccCCC
Confidence 999999999986 678889999999999999999999999999
Q ss_pred ceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccccceeec
Q psy15088 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITD 886 (1291)
Q Consensus 807 ~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~ 886 (1291)
|+|+||||||||++..|+++++.+|+|.|+..++.....|.+..+||||..++|+.+|||||+++.|+|+++.|++|+++
T Consensus 392 gRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt 471 (842)
T KOG0469|consen 392 GRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITT 471 (842)
T ss_pred ceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceee
Confidence 99999999999999999999999999999988887777889999999999999999999999999999999999999998
Q ss_pred cccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEecchhHHHHHHHHHHhh
Q psy15088 887 LITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKM 966 (1291)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g~GELHLEi~l~~L~~~ 966 (1291)
. +.+++++.|+|+.+||++||||++||.|+|||.+||++|+++||++.+..+|+|||+|.|.||||||||++||+++
T Consensus 472 ~---e~AHNmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeed 548 (842)
T KOG0469|consen 472 S---EAAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEED 548 (842)
T ss_pred h---hhhccceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhc
Confidence 7 4678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHh
Q psy15088 967 YSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLL 1046 (1291)
Q Consensus 967 f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 1046 (1291)
|++|+++.|+|.|+|||||.+.++..|.++||||||+|+|+++|+++++.++++++.++...+.|.++++|+++|+||..
T Consensus 549 hA~iPlk~sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt 628 (842)
T KOG0469|consen 549 HACIPLKKSDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVT 628 (842)
T ss_pred ccCCceecCCCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchh
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred hhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCc
Q psy15088 1047 AARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQ 1126 (1291)
Q Consensus 1047 ~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~q 1126 (1291)
++|+||||||+.+|+|+++|.| ++++ |+++|+++++.|||||+++|||++|.||||+|.|.|+.+|+|+||||+||
T Consensus 629 ~aRKIWCfgPd~tg~Nll~D~T--K~vq--ylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQ 704 (842)
T KOG0469|consen 629 EARKIWCFGPDGTGPNLLVDQT--KGVQ--YLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQ 704 (842)
T ss_pred hhheeeEeCCCCCCCcEEEecc--hhhH--HHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCe
Confidence 9999999999999999999988 7887 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHH
Q psy15088 1127 IIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDL 1206 (1291)
Q Consensus 1127 ii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~L 1206 (1291)
|||++||+||.+++.|+|+|+||+|.||||||++++|.||++|++|||++.++++.+||++|.|+|++||.|||||..+|
T Consensus 705 iipt~rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dL 784 (842)
T KOG0469|consen 705 IIPTARRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADL 784 (842)
T ss_pred echHHHHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccceEeeecccceeecCCCCcCcccccCCCCCCCcccHHHHHHHHHhhccCCCCCCC-ccccCCH
Q psy15088 1207 RTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVS-INKFFDD 1274 (1291)
Q Consensus 1207 Rs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~~~~~~~a~~~~~~iR~rKGl~~~~~-~~~~~d~ 1274 (1291)
|+.|.|+|++||+|+||+++|+||+|.. +.+.+++.++||||||.+.++ +++|+|+
T Consensus 785 rs~t~GqAfpq~vFdHws~lpgdp~dp~------------sk~~~iV~~~RKrkglke~~P~~~~y~Dk 841 (842)
T KOG0469|consen 785 RSNTGGQAFPQMVFDHWSILPGDPLDPT------------SKPGQIVLATRKRKGLKEGVPDLDEYLDK 841 (842)
T ss_pred hcccCCccccceeeeccccCCCCCCCCC------------ccchHHHHHHHHhcCCCCCCCChHHHhhc
Confidence 9999999999999999999999999865 677899999999999999995 9999986
No 3
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.9e-120 Score=1164.91 Aligned_cols=797 Identities=33% Similarity=0.563 Sum_probs=638.1
Q ss_pred cccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecc
Q psy15088 383 TVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLL 462 (1291)
Q Consensus 383 ~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~ 462 (1291)
..|+.++|.++|+++++||||||+||+|||||||+++|++.+|.+... ..++.+++|++++|++||+|++++.+++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (843)
T PLN00116 2 VKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYY 79 (843)
T ss_pred CccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEe
Confidence 357899999999999999999999999999999999999999977643 456788899999999999999999999999
Q ss_pred cc-----------cCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhh
Q psy15088 463 PD-----------VKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFV 529 (1291)
Q Consensus 463 ~~-----------~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fi 529 (1291)
.. .+++++.+||||||||.+|. +..++..+|+||+|+|+..|+..||+++++.+...++|++| ||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~--~i 157 (843)
T PLN00116 80 EMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL--TV 157 (843)
T ss_pred ecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEE--EE
Confidence 42 23458999999999998765 56666778999999999999999999999999999999987 88
Q ss_pred hhHHHHHHHHhhCCc-------cCcHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccc-cCCCcccc-ccccccccc
Q psy15088 530 LEPVYKLVAQVVGDV-------DSSLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRV-PAGNWVLI-EGIDQPIVK 600 (1291)
Q Consensus 530 l~~i~k~~d~~~~~~-------~~~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~-P~~~~~~~-~~~~~~~~~ 600 (1291)
| | +|+...+- ...+.++++.++..+.... ... +...|+ |+.+.+.| +.+..+.+.
T Consensus 158 N----K-~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~-----~~~------~~~~~~~P~~~nv~F~s~~~~~~~~ 221 (843)
T PLN00116 158 N----K-MDRCFLELQVDGEEAYQTFSRVIENANVIMATYE-----DPL------LGDVQVYPEKGTVAFSAGLHGWAFT 221 (843)
T ss_pred E----C-CcccchhhcCCHHHHHHHHHHHHHHHHHHHHhcc-----ccc------cCceEEccCCCeeeeeecccCEEEE
Confidence 8 5 56552111 1233444443321000000 000 111223 76665444 222221110
Q ss_pred c-----------CceEEcccccccccCceeec--CCCCc-cC-cc----chHHHHHHHHHHHHHhhhcCCCchHHHHHHh
Q psy15088 601 T-----------STITDLITNEDITSNKFLID--GFPRN-QN-NL----DGWNKEMADKVELLYVLFFDCPEDVCVRRCL 661 (1291)
Q Consensus 601 ~-----------~~liDll~~~~i~~~~~liD--GfPr~-~~-qa----~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l 661 (1291)
- .+..|++.+..+ ..+..+ +.... .. +. ..+...+.+....+....++. ++.++++++
T Consensus 222 l~~~~~~y~~~~~~~~~~l~~~lw--g~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~-d~~lle~~l 298 (843)
T PLN00116 222 LTNFAKMYASKFGVDESKMMERLW--GENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMND-QKDKLWPML 298 (843)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHhh--ccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 0 112233322211 111112 11000 00 01 111111112222222223343 456778888
Q ss_pred hcccCCCCCCCCCHHHHHH-HHhhccccccceEEeecchhhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCc
Q psy15088 662 KRGAEGSGRADDNEESLKK-RISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDS 740 (1291)
Q Consensus 662 ~rg~~~~~r~dd~~e~i~~-rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~ 740 (1291)
+... ...+.++++. +-...+..+.|+++ |.+.|||+|++++|||.++++.++..+|.++.
T Consensus 299 ~~~~-----~~l~~~el~~~~~~l~~~~~~pv~~------------~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~-- 359 (843)
T PLN00116 299 EKLG-----VTLKSDEKELMGKALMKRVMQTWLP------------ASDALLEMIIFHLPSPAKAQRYRVENLYEGPL-- 359 (843)
T ss_pred HhCC-----CCCCHHHHhhhhHHHHHHHHHhhcC------------ChHHHHHHHHHhCCChHHhhhHHhhhccCCCC--
Confidence 7531 1345555544 22445566667766 45899999999999999988888888776532
Q ss_pred hhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEe
Q psy15088 741 DVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTL 820 (1291)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL 820 (1291)
+++...++.+||+++|++++|||+..+++.+++++|+|||||+|
T Consensus 360 ------------------------------------~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL 403 (843)
T PLN00116 360 ------------------------------------DDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTV 403 (843)
T ss_pred ------------------------------------CccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeee
Confidence 12233467789999999999999999888777899999999999
Q ss_pred cCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCC
Q psy15088 821 HAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLK 900 (1291)
Q Consensus 821 ~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~ 900 (1291)
++||+|++++++++....+..+.++|++||+++|++.+++++|+|||||+|.|+++++++++||++.. ...+.++.++.
T Consensus 404 ~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~-~~~~~~l~~~~ 482 (843)
T PLN00116 404 ATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIKAMK 482 (843)
T ss_pred cCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCc-ccCCccccccc
Confidence 99999999999887654444556799999999999999999999999999999998877788997652 11356677888
Q ss_pred CCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEecchhHHHHHHHHHHhhhc-ceeEEEcCceE
Q psy15088 901 FNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYS-EIDIKVADPVV 979 (1291)
Q Consensus 901 ~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g~GELHLEi~l~~L~~~f~-~i~i~vs~p~V 979 (1291)
++.+||++++|||.+++|+++|.+||++|+++||+++++.++|||++|+||||||||+|++||+++|+ ++++++|+|+|
T Consensus 483 ~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V 562 (843)
T PLN00116 483 FSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVV 562 (843)
T ss_pred cCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeE
Confidence 86589999999999999999999999999999999999889999999999999999999999999996 79999999999
Q ss_pred EEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCC
Q psy15088 980 AFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVT 1059 (1291)
Q Consensus 980 ~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~ 1059 (1291)
+|||||.+++...+..+++++|++++++++|++++..+.++.+.+....+.+.+.+.+...|+|+.+.++++|+|||+..
T Consensus 563 ~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~ 642 (843)
T PLN00116 563 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETT 642 (843)
T ss_pred EEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCC
Confidence 99999999877655566789999999999999988877788776665556666677788889999999999999999999
Q ss_pred CCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHH
Q psy15088 1060 GPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAF 1139 (1291)
Q Consensus 1060 g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~ 1139 (1291)
|+|+|++.+.+. .++++++++|++||+||+++||||||||+||+|+|.|+.+|++..+++++|+++++++||++||
T Consensus 643 ~~~~~~~~~~g~----~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al 718 (843)
T PLN00116 643 GPNMVVDMCKGV----QYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQ 718 (843)
T ss_pred CceEEEECCcch----hhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHH
Confidence 999999977543 4788999999999999999999999999999999999999988778888999999999999999
Q ss_pred HhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeec
Q psy15088 1140 LMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSV 1219 (1291)
Q Consensus 1140 l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~ 1219 (1291)
++|+|+||||||.|||+||++++|+|+++|++|||+|+++++.+|+++++|+|++|++|||||+++||++|+|+|+|+|.
T Consensus 719 ~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~ 798 (843)
T PLN00116 719 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
T ss_pred HhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEE
Confidence 99999999999999999999999999999999999999988877888899999999999999999999999999999999
Q ss_pred ccceeecCCCCcCcccccCCCCCCCcccHHHHHHHHHhhccCCCCCC-CccccCCH
Q psy15088 1220 FHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDV-SINKFFDD 1274 (1291)
Q Consensus 1220 f~~~~~v~~dp~~~~~~~~~~~~~~~~~~a~~~~~~iR~rKGl~~~~-~~~~~~d~ 1274 (1291)
|+||++||+||||. +|+||+||++||+||||++++ ++++|+|+
T Consensus 799 f~~y~~v~~dp~~~------------~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~ 842 (843)
T PLN00116 799 FDHWDMMSSDPLEA------------GSQAAQLVADIRKRKGLKEQMPPLSEYEDK 842 (843)
T ss_pred eceeEECCCCCCCc------------hhHHHHHHHHHHhhCCCCCCCCCHHHhccc
Confidence 99999999999985 499999999999999999965 69999996
No 4
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.4e-119 Score=1154.35 Aligned_cols=797 Identities=35% Similarity=0.606 Sum_probs=627.6
Q ss_pred cccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecc
Q psy15088 383 TVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLL 462 (1291)
Q Consensus 383 ~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~ 462 (1291)
..|+.+++.++|+++++||||||+||+|||||||+++|++.+|.+... ..+..+++|++++|++||+||+++.+++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (836)
T PTZ00416 2 VNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK--NAGDARFTDTRADEQERGITIKSTGISLYY 79 (836)
T ss_pred CccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCceeecccchhhHhhcceeeccceEEEe
Confidence 357889999999999999999999999999999999999999876543 345567899999999999999999999998
Q ss_pred ccc-----CCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHH
Q psy15088 463 PDV-----KGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYK 535 (1291)
Q Consensus 463 ~~~-----~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k 535 (1291)
... +.+++.|||||||||.++. +..++..+|+||+|+|+..|+.+||+.+++.+...++|+++ |+| |
T Consensus 80 ~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv--~iN----K 153 (836)
T PTZ00416 80 EHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVL--FIN----K 153 (836)
T ss_pred ecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEE--EEE----C
Confidence 421 2347899999999998654 56666778999999999999999999999999999999877 787 6
Q ss_pred HHHHhhCCcc-------CcHHHHHHHhCCCcCh---hhh-hcCchHHHHHHHhhccccccCCCcc--------ccccccc
Q psy15088 536 LVAQVVGDVD-------SSLPAVLDQLGIHMNK---EES-KINIRPLLRLVYKVEVNRVPAGNWV--------LIEGIDQ 596 (1291)
Q Consensus 536 ~~d~~~~~~~-------~~l~~i~~~lg~~l~~---~~~-~~~~~~~l~~i~~~~~~~~P~~~~~--------~~~~~~~ 596 (1291)
+|+...+.. ..+.++++.++..+.. ... .....|. ..++|++... .|.++..
T Consensus 154 -~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~--------~~~vp~~s~~~~~~f~~~~F~~~y~ 224 (836)
T PTZ00416 154 -VDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPE--------KGTVAFGSGLQGWAFTLTTFARIYA 224 (836)
T ss_pred -hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceeccee--------ccEEEEEeccccceeehHHhhhhhh
Confidence 676632212 2334444433211110 000 0001111 3456653322 1111110
Q ss_pred cccccCceEEccccccccc-------CceeecCCCCccCcc-chHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCC
Q psy15088 597 PIVKTSTITDLITNEDITS-------NKFLIDGFPRNQNNL-DGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGS 668 (1291)
Q Consensus 597 ~~~~~~~liDll~~~~i~~-------~~~liDGfPr~~~qa-~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~ 668 (1291)
. .+....+.+.+..+.. ..+.....|....+. ..+.+.+.+....+....++.+ +.+++++++......
T Consensus 225 ~--~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d-d~lle~~l~~~~~~l 301 (836)
T PTZ00416 225 K--KFGVEESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNED-KEKYDKMLKSLNISL 301 (836)
T ss_pred h--hcCCcHHHHHHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHcCCCc
Confidence 0 0111223332222110 011111112111111 1122223333333333334444 567788887432111
Q ss_pred CCCC--CCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhh
Q psy15088 669 GRAD--DNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDM 746 (1291)
Q Consensus 669 ~r~d--d~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~ 746 (1291)
...+ .+...+.+.+. +. ++|.+++|||+|++++|||.+++..+...+|.++.
T Consensus 302 ~~~e~~~~~~~l~~~~~---~~---------------~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~-------- 355 (836)
T PTZ00416 302 TGEDKELTGKPLLKAVM---QK---------------WLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPM-------- 355 (836)
T ss_pred ChHHhccChHHHHHHHH---HH---------------HhchHHHHHHHHHHhCCChhHhCchhhhccccCCC--------
Confidence 1111 11111111111 23 33558899999999999999888777776665432
Q ss_pred hccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEE
Q psy15088 747 KACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEV 826 (1291)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v 826 (1291)
++....++.+||+++|++++|||+..+++.|+|++|+|||||+|++||+|
T Consensus 356 ------------------------------~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v 405 (836)
T PTZ00416 356 ------------------------------DDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKV 405 (836)
T ss_pred ------------------------------CccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEE
Confidence 12223456789999999999999999998888899999999999999999
Q ss_pred EEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCce
Q psy15088 827 RVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSV 906 (1291)
Q Consensus 827 ~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv 906 (1291)
++++++++..+.++....+|++||+++|++..++++|+|||||+|.|+++.+.+++||++. ..+.++.++.++++||
T Consensus 406 ~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~---~~~~~l~~i~~~~~Pv 482 (836)
T PTZ00416 406 RIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTS---ETAHNIRDMKYSVSPV 482 (836)
T ss_pred EEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCC---CCcccccccccCCCCe
Confidence 9999987654333223346999999999999999999999999999999877788898764 3456677888766899
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeee
Q psy15088 907 IKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVV 986 (1291)
Q Consensus 907 ~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~ 986 (1291)
++++|||.+++|+++|.+||++|+++||++.++.++|||++|+||||||||+|++||+++|+++++++|+|+|+|||||+
T Consensus 483 ~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~ 562 (836)
T PTZ00416 483 VRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVT 562 (836)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEec
Confidence 99999999999999999999999999999999889999999999999999999999999997899999999999999999
Q ss_pred ecccceeeeecCCcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceecc
Q psy15088 987 ETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVD 1066 (1291)
Q Consensus 987 ~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd 1066 (1291)
+.+...+..++++++++++++++|+++++.+.++.+........+.+.+++...|+|+.+.++++|+|||+..|+|+|+|
T Consensus 563 ~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~ 642 (836)
T PTZ00416 563 EESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVD 642 (836)
T ss_pred ccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEe
Confidence 99888788888899999999999999988777877766555555556667777899999999999999999999999999
Q ss_pred CCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCce
Q psy15088 1067 DTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRL 1146 (1291)
Q Consensus 1067 ~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~L 1146 (1291)
.+.|. +++++++++|++||+||+++||||||||+||+|+|.|+.+|++..+++++|+++|+++||++|+++|+|+|
T Consensus 643 ~~~~~----~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~L 718 (836)
T PTZ00416 643 VTKGV----QYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRL 718 (836)
T ss_pred cCCcc----cchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEE
Confidence 88664 37889999999999999999999999999999999999999887888899999999999999999999999
Q ss_pred eccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeec
Q psy15088 1147 MEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIV 1226 (1291)
Q Consensus 1147 lEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v 1226 (1291)
|||||.|+|+||++++|+|+++|++|||+|+++++.+||++++|+|++|++|+|||+++||++|+|+|+|+|.|+||++|
T Consensus 719 lEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~v 798 (836)
T PTZ00416 719 LEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVV 798 (836)
T ss_pred EeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEEC
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccCCCCCCCcccHHHHHHHHHhhccCCCCCC-CccccCCH
Q psy15088 1227 PGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDV-SINKFFDD 1274 (1291)
Q Consensus 1227 ~~dp~~~~~~~~~~~~~~~~~~a~~~~~~iR~rKGl~~~~-~~~~~~d~ 1274 (1291)
|+||||.+ |+||+||++|||||||++++ .+++|+|+
T Consensus 799 p~dp~~~~------------~~a~~~~~~~R~rKGl~~~~~~~~~~~~~ 835 (836)
T PTZ00416 799 PGDPLEPG------------SKANEIVLSIRKRKGLKPEIPDLDNYLDK 835 (836)
T ss_pred CCCCCCch------------hHHHHHHHHHHHhCCCCCCCCCHHHhccc
Confidence 99999874 99999999999999999776 69999997
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-110 Score=1029.43 Aligned_cols=673 Identities=26% Similarity=0.397 Sum_probs=571.0
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCC-CeEEEEE
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK-NYLMNIF 475 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~-~~~~~li 475 (1291)
++++|||+|+||+|||||||+++||+.+|.+...+.+..|+++||++++||+|||||+++.+++.| + +++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-----~~~~~iNlI 81 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-----KGDYRINLI 81 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-----cCceEEEEe
Confidence 789999999999999999999999999999998888899999999999999999999999999999 6 4999999
Q ss_pred eCCCcccc-----cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHH
Q psy15088 476 DTPASPVT-----LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPA 550 (1291)
Q Consensus 476 DTpGh~~~-----~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~ 550 (1291)
|||||.+| ++|+++ |+||+|+|+.+|+++||.++|+++.++++|+++ ||| | ||+..+++.....+
T Consensus 82 DTPGHVDFt~EV~rslrvl---DgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~--fiN----K-mDR~~a~~~~~~~~ 151 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVL---DGAVVVVDAVEGVEPQTETVWRQADKYGVPRIL--FVN----K-MDRLGADFYLVVEQ 151 (697)
T ss_pred CCCCccccHHHHHHHHHhh---cceEEEEECCCCeeecHHHHHHHHhhcCCCeEE--EEE----C-ccccccChhhhHHH
Confidence 99999765 466666 689999999999999999999999999999988 998 6 89999998888888
Q ss_pred HHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc---eeecCCCCcc
Q psy15088 551 VLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK---FLIDGFPRNQ 627 (1291)
Q Consensus 551 i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~---~liDGfPr~~ 627 (1291)
+..+|+..+ . +-|+||++...| .+++|+++++.+.|.. +-....|...
T Consensus 152 l~~~l~~~~-----------~--------~v~~pIg~~~~f----------~g~idl~~~~~~~~~~~~~~~~~~ip~~~ 202 (697)
T COG0480 152 LKERLGANP-----------V--------PVQLPIGAEEEF----------EGVIDLVEMKAVAFGDGAKYEWIEIPADL 202 (697)
T ss_pred HHHHhCCCc-----------e--------eeeccccCcccc----------CceeEhhhcCeEEEcCCcccceeeCCHHH
Confidence 888775411 1 236788886655 4688999998776652 1112234211
Q ss_pred -CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhh
Q psy15088 628 -NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKR 704 (1291)
Q Consensus 628 -~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~ 704 (1291)
..+.+|+..+.+.+ ++ .++.++++|++.. +.+.+.|++.+ .+....+.|++|+++.+|
T Consensus 203 ~~~~~e~r~~~~e~i-------~e-~de~l~e~yl~g~-------e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn---- 263 (697)
T COG0480 203 KEIAEEAREKLLEAL-------AE-FDEELMEKYLEGE-------EPTEEEIKKALRKGTIAGKIVPVLCGSAFKN---- 263 (697)
T ss_pred HhHHHHHHHHHHHHH-------hh-cCHHHHHHHhcCC-------CccHHHHHHHHHHhhhccceeeEEeeecccC----
Confidence 23345555555433 12 2356777777643 36677787766 445678999999999999
Q ss_pred hchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhh
Q psy15088 705 FNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDM 784 (1291)
Q Consensus 705 ~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1291)
+|++.|||++++|||||.+++ .|.|..+ ++....+
T Consensus 264 -~gv~~lLdav~~~lPsP~e~~------~~~g~~~--------------------------------------~~~~~~~ 298 (697)
T COG0480 264 -KGVQPLLDAVVDYLPSPLDVP------PIKGDLD--------------------------------------DEIEKAV 298 (697)
T ss_pred -CcHHHHHHHHHHHCCChhhcc------cccccCC--------------------------------------ccccchh
Confidence 999999999999999999987 3445431 1111222
Q ss_pred h-ccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeecee
Q psy15088 785 K-ACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRV 863 (1291)
Q Consensus 785 ~-~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a 863 (1291)
. .++.++|++++|||+..++..|. ++|+|||||+|++||.|++.++ .+.++|++|++|+|+++++++++
T Consensus 299 ~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~RvysGtl~~G~~v~n~~~---------~~~erv~~l~~~~~~~~~~v~~~ 368 (697)
T COG0480 299 LRKASDEGPLSALVFKIMTDPFVGK-LTFVRVYSGTLKSGSEVLNSTK---------GKKERVGRLLLMHGNEREEVDEV 368 (697)
T ss_pred cccCCCCCceEEEEEEeEecCCCCe-EEEEEEeccEEcCCCEEEeCCC---------CccEEEEEEEEccCCceeecccc
Confidence 2 24568999999999999988765 8999999999999999998763 46799999999999999999999
Q ss_pred eCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-Cc
Q psy15088 864 PAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EE 942 (1291)
Q Consensus 864 ~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~e 942 (1291)
+||||+++.||++..+ ++|+++.. ....+.++.++ +||+++||||++++|++||.+||++|+++||++.++. +|
T Consensus 369 ~AG~I~a~~Gl~~~~t-GdTl~~~~---~~v~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~E 443 (697)
T COG0480 369 PAGDIVALVGLKDATT-GDTLCDEN---KPVILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEE 443 (697)
T ss_pred cCccEEEEEccccccc-CCeeecCC---CccccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCC
Confidence 9999999999999743 68888753 25678899997 9999999999999999999999999999999999998 89
Q ss_pred CCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceee----eecCCcceEEEEEEeecCcccccc
Q psy15088 943 SGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF----AETPNKRNKITMIAEPLEKGLAED 1018 (1291)
Q Consensus 943 tGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~----~~s~nk~~~i~~~~ePl~~~~~~~ 1018 (1291)
|||++|+|||||||||++++|+++| |+++++++|+|+||||+.+.+..... +.++++++++++.+||++++.+..
T Consensus 444 tge~iIsGmGELHLei~~drl~~~~-~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~ 522 (697)
T COG0480 444 TGETIISGMGELHLEIIVDRLKREF-GVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFE 522 (697)
T ss_pred cccEEEEecchhhHHHHHHHHHhhc-CceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceE
Confidence 9999999999999999999999999 89999999999999999988764221 446789999999999999876444
Q ss_pred cccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCcc
Q psy15088 1019 IENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPL 1098 (1291)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL 1098 (1291)
+.+. .+| +..|++ |+++ +..||+||+++|||
T Consensus 523 f~~~------------------i~~-----------------------g~~P~~----yi~~----ve~G~~~a~~~GpL 553 (697)
T COG0480 523 FVDK------------------IVG-----------------------GVVPKE----YIPA----VEKGFREALKSGPL 553 (697)
T ss_pred EEee------------------ccc-----------------------CcCchh----hhHH----HHHHHHHHHhcCCC
Confidence 3322 112 233442 5655 44599999999999
Q ss_pred CCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEee
Q psy15088 1099 CEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQ 1178 (1291)
Q Consensus 1099 ~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~ 1178 (1291)
+||||+||+|+|.|+++|+++ ++..|+.+++++|+++|+++|+|+||||||+|+|++|++++|.|+++|++|||+|++
T Consensus 554 ag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~ 631 (697)
T COG0480 554 AGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILG 631 (697)
T ss_pred CCCceEeeEEEEEcCccccCC--CCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEec
Confidence 999999999999999999876 677899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCCCCcccHHHHHHHHHhh
Q psy15088 1179 DAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRR 1258 (1291)
Q Consensus 1179 ~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~~~~~~~a~~~~~~iR~ 1258 (1291)
++..+|+++++|+|++|++|||||+++|||+|+|+|+|+|.|+||+++| .|+|++++.+.|+
T Consensus 632 ~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp------------------~~~a~~ii~~~~~ 693 (697)
T COG0480 632 MEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVP------------------SSVAEEIIAKRRK 693 (697)
T ss_pred eeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCC------------------HHHHHHHHHHhhh
Confidence 8887677889999999999999999999999999999999999999998 3889999999999
Q ss_pred ccCC
Q psy15088 1259 RKGL 1262 (1291)
Q Consensus 1259 rKGl 1262 (1291)
|||+
T Consensus 694 ~~~~ 697 (697)
T COG0480 694 RKGL 697 (697)
T ss_pred hcCC
Confidence 9996
No 6
>KOG0467|consensus
Probab=100.00 E-value=1.1e-111 Score=987.44 Aligned_cols=782 Identities=28% Similarity=0.447 Sum_probs=614.6
Q ss_pred CCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch
Q psy15088 175 GPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML 254 (1291)
Q Consensus 175 GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~ 254 (1291)
+-..+|+.||||.+.+-+.+-.. ++.+||||+|||.||.+++.+|.+.||+++++||+.+|+++
T Consensus 48 d~redeq~rgitmkss~is~~~~----------------~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~ 111 (887)
T KOG0467|consen 48 DTREDEQTRGITMKSSAISLLHK----------------DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCS 111 (887)
T ss_pred cccchhhhhceeeeccccccccC----------------ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccch
Confidence 44678999999999665553222 56899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCc
Q psy15088 255 NTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDK 334 (1291)
Q Consensus 255 ~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 334 (1291)
||+.++|+++..|.++|||+||||+...|+++.|.|+|.++-+++++||.++.++..+....+..
T Consensus 112 qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~--------------- 176 (887)
T KOG0467|consen 112 QTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDN--------------- 176 (887)
T ss_pred hHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccch---------------
Confidence 99999999999999999999999999999999999999999999999999999875432211000
Q ss_pred ccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChh
Q psy15088 335 RYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKT 414 (1291)
Q Consensus 335 ~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKs 414 (1291)
.+.+. | ....|.|.++++.+.. .+..|.|+.+
T Consensus 177 -------------~~~i~---d----~~~~F~p~kgNVif~~--A~~~~~f~~~-------------------------- 208 (887)
T KOG0467|consen 177 -------------WENIE---D----EEITFGPEDGNVIFAS--ALDGWGFGIE-------------------------- 208 (887)
T ss_pred -------------hhhhh---h----cceeecCCCCcEEEEE--ecccccccHH--------------------------
Confidence 00000 0 1124556656654433 3344444433
Q ss_pred HHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcccccccccccccce
Q psy15088 415 TMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNY 494 (1291)
Q Consensus 415 Tl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~~l~~~~~ad~ 494 (1291)
+|++..-.+.+. .+.+++
T Consensus 209 ~fak~~~~kl~~------------------k~~al~-------------------------------------------- 226 (887)
T KOG0467|consen 209 QFAKFYAKKLGL------------------KDAALL-------------------------------------------- 226 (887)
T ss_pred HHHHHHHHhcCh------------------hhhhhh--------------------------------------------
Confidence 334443333221 111222
Q ss_pred EEEEecCCCc--cchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCc-cCcHHHHHHHhCCCcChhhhhcCchHH
Q psy15088 495 LMNIFDTPGM--WDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDV-DSSLPAVLDQLGIHMNKEESKINIRPL 571 (1291)
Q Consensus 495 ~v~vida~~g--~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~-~~~l~~i~~~lg~~l~~~~~~~~~~~~ 571 (1291)
.-.|++ +++.|+++.....-.|++++|++|+++|+|++|+...... ...+.+++..+|+++.+++++ .+
T Consensus 227 ----k~lwgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~l 298 (887)
T KOG0467|consen 227 ----KFLWGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NL 298 (887)
T ss_pred ----hhhccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HH
Confidence 245666 3677888777666677799999999999999999766544 356899999999999998875 67
Q ss_pred HHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHHHHHHHHHHhhhcCC
Q psy15088 572 LRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDC 651 (1291)
Q Consensus 572 l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~ 651 (1291)
+.++|+ .|+
T Consensus 299 l~~im~---------------------------------------~wL-------------------------------- 307 (887)
T KOG0467|consen 299 LDAIMS---------------------------------------TWL-------------------------------- 307 (887)
T ss_pred HHHHHH---------------------------------------hhc--------------------------------
Confidence 777776 222
Q ss_pred CchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHHHhhCCCCccchhhhhh
Q psy15088 652 PEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVS 731 (1291)
Q Consensus 652 ~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~ 731 (1291)
+-.+..+-+++.++|+|.+++..|..
T Consensus 308 ------------------------------------------------------Pls~avll~a~~~lp~pl~~~~~r~~ 333 (887)
T KOG0467|consen 308 ------------------------------------------------------PLSDAVLLTVVYKLPDPIRSQAERGL 333 (887)
T ss_pred ------------------------------------------------------ccccchHHHHHHhcCCHHHHHHHhhc
Confidence 22233455678899999999988877
Q ss_pred cccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEEEEeeccCCCCc----
Q psy15088 732 YMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECT---- 807 (1291)
Q Consensus 732 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~---- 807 (1291)
++..-+. + ..+.++++++..|++.+|..+||+||...+.+.
T Consensus 334 rl~~s~~--------~---------------------------~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~ 378 (887)
T KOG0467|consen 334 RLLSSSD--------H---------------------------RSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQS 378 (887)
T ss_pred eeccCcc--------c---------------------------ccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchh
Confidence 7654211 0 014566788888999999999999998865432
Q ss_pred eeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccccceeecc
Q psy15088 808 FFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDL 887 (1291)
Q Consensus 808 ~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~ 887 (1291)
++++|+||||||++.||.|++++| ++..++.....+|.++|++||++..+.+++++||+++|.| ...+.|++|+++.
T Consensus 379 ~l~~~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~ 455 (887)
T KOG0467|consen 379 RLLAFARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSK 455 (887)
T ss_pred hheeeeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceeccc
Confidence 378999999999999999999998 5555556778999999999999999999999999999999 8888899999986
Q ss_pred ccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEecchhHHHHHHHHHHhhh
Q psy15088 888 ITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMY 967 (1291)
Q Consensus 888 ~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g~GELHLEi~l~~L~~~f 967 (1291)
. .+.++..+.|..+|+++|+|||.+|.++++|.++|+.|++.|||+++.++++|||++.+.||+|||+|++||++ |
T Consensus 456 ~---~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-f 531 (887)
T KOG0467|consen 456 V---PCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-F 531 (887)
T ss_pred C---CCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-h
Confidence 2 34555557888899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cceeEEEcCceEEEEEeeeecccce-------eeeecCCcceEEEEEEeecCccccccccccee----------------
Q psy15088 968 SEIDIKVADPVVAFCETVVETSSLK-------CFAETPNKRNKITMIAEPLEKGLAEDIENQIV---------------- 1024 (1291)
Q Consensus 968 ~~i~i~vs~p~V~yrEti~~~~~~~-------~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~---------------- 1024 (1291)
+++++.+|+|.|+||||+.+.+.+. .....+.+...+.+++.|+...+.+.+..+..
T Consensus 532 a~i~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~ 611 (887)
T KOG0467|consen 532 AKIEISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPID 611 (887)
T ss_pred hceEEEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccc
Confidence 9999999999999999997766442 11223455577888888887544332221110
Q ss_pred -----cccc---chhHHHHHHh-hhc-cccHhhhcceeeeCCCCCCCceeccCCC-Cch--hh-hhhhhhHHHHHHHHHH
Q psy15088 1025 -----HIAW---NKKRLGEFFQ-SKY-DWDLLAARSIWAFGPEVTGPNILVDDTL-PSE--VD-KGLLGSVKDSIVQGFQ 1090 (1291)
Q Consensus 1025 -----~~~~---~~~~~~~~~~-~~~-~w~~~~~~~iw~~gp~~~g~nilvd~~~-~~~--~~-~~~~~~i~~si~~Gf~ 1090 (1291)
.+.. ....+.+.+. ++- .-......++|+|||.++|+|+|++..- +.. +. ..+...+-+++++|||
T Consensus 612 e~~k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfq 691 (887)
T KOG0467|consen 612 ESQKGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQ 691 (887)
T ss_pred ccccccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHh
Confidence 0000 0011111111 100 0001123678999999999999986431 110 00 0112227799999999
Q ss_pred HhhhcCccCCCCceeeEEEEEEeeeec-CCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHH
Q psy15088 1091 WGTREGPLCEEPIRNVKFKILDAVIAT-EPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVL 1169 (1291)
Q Consensus 1091 ~a~~~GPL~~epv~gv~~~l~d~~~~~-~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L 1169 (1291)
.++..||||.|||+|++|.+..+.... +......||+++++|.+|++||+..+||||.|||.|+|++..+++|+||.+|
T Consensus 692 l~~~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVl 771 (887)
T KOG0467|consen 692 LATSSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVL 771 (887)
T ss_pred hhhccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhh
Confidence 999999999999999999999854432 1122335999999999999999999999999999999999999999999999
Q ss_pred hccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCC----CCCc
Q psy15088 1170 AKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLE----PQPA 1245 (1291)
Q Consensus 1170 ~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~----~~~~ 1245 (1291)
+||+|+|+++++.+||++|.|+|++||.|||||+++||+.|||.|++|+.||||++++.||||.|+|+||+| +++.
T Consensus 772 skR~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs 851 (887)
T KOG0467|consen 772 SKRHGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADS 851 (887)
T ss_pred hhhcchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4899
Q ss_pred ccHHHHHHHHHhhccCCCCCCCccccC
Q psy15088 1246 THLAREFMIKTRRRKGLSEDVSINKFF 1272 (1291)
Q Consensus 1246 ~~~a~~~~~~iR~rKGl~~~~~~~~~~ 1272 (1291)
+|+||+||+.|||||||++|.++-++=
T Consensus 852 ~N~ArkYMdaVRRRKGLfVEEkIVE~A 878 (887)
T KOG0467|consen 852 ENIARKYMDAVRRRKGLFVEEKIVEHA 878 (887)
T ss_pred hhHHHHHHHHHHhhcCCchHHHHhhhH
Confidence 999999999999999999998866543
No 7
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=6e-107 Score=1030.76 Aligned_cols=718 Identities=27% Similarity=0.470 Sum_probs=573.1
Q ss_pred hHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC
Q psy15088 387 MEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 387 ~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
.+++.++|+++++||||||+||+|||||||+++|++.+|.+... ..++++++|++++|++||+||+++.+++.| ...
T Consensus 7 ~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~ 83 (731)
T PRK07560 7 VEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVH-EYE 83 (731)
T ss_pred HHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEE-Eec
Confidence 46788899999999999999999999999999999999987653 345678999999999999999999999988 345
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCc
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDV 544 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~ 544 (1291)
++++.+||||||||.++. ...++..+|++|+|+|+..|++.||+++++.+...++|+++ ||| | +|+...+.
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv--~iN----K-~D~~~~~~ 156 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVL--FIN----K-VDRLIKEL 156 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEE--EEE----C-chhhcccc
Confidence 568999999999998653 45566678999999999999999999999999888998865 787 6 78777766
Q ss_pred cCcHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCC
Q psy15088 545 DSSLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFP 624 (1291)
Q Consensus 545 ~~~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfP 624 (1291)
+.....+..+++..+ .....++..... .++ ...|. + .| ..+.+.+-+. .. +| ||.
T Consensus 157 ~~~~~~~~~~~~~~~------~e~~~~l~~~~~---~~~-~~~~~-~----~~---~~~~v~~~sa--~~--~~---~~~ 211 (731)
T PRK07560 157 KLTPQEMQQRLLKII------KDVNKLIKGMAP---EEF-KEKWK-V----DV---EDGTVAFGSA--LY--NW---AIS 211 (731)
T ss_pred cCCHHHHHHHHHHHH------HHHHHHHHHhhh---hhh-hccee-e----cC---CCCcEeeeec--cc--cc---cee
Confidence 665555555443211 112222221111 000 00000 0 00 0000000000 00 00 000
Q ss_pred CccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhh
Q psy15088 625 RNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKR 704 (1291)
Q Consensus 625 r~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~ 704 (1291)
...+.+ ..++. +.+++.+. +...+.+. .+
T Consensus 212 ---------~~~~~~-------~~~~~--~~l~e~~~----------~~~~~~l~-----------------------~~ 240 (731)
T PRK07560 212 ---------VPMMQK-------TGIKF--KDIIDYYE----------KGKQKELA-----------------------EK 240 (731)
T ss_pred ---------HHHHHH-------hCCCH--HHHHHHHh----------cCCHHHHH-----------------------hh
Confidence 000111 01111 12232221 01222222 12
Q ss_pred hchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhh
Q psy15088 705 FNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDM 784 (1291)
Q Consensus 705 ~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1291)
+|-.+.|||+|++++|||.++++.+.+.+|.|.. .+......
T Consensus 241 ~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~ 282 (731)
T PRK07560 241 APLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDL--------------------------------------NSEVGKAM 282 (731)
T ss_pred ccchhHHHHHHHHhCCChhhhhhhcccccccCCC--------------------------------------Ccccccee
Confidence 3555899999999999999988888877776543 11122345
Q ss_pred hccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceee
Q psy15088 785 KACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVP 864 (1291)
Q Consensus 785 ~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~ 864 (1291)
.+||+++|++++|||+..+++.| +++|+|||||+|++||.|++.+++ ..++|++|++++|++..++++++
T Consensus 283 ~~~d~~~p~~a~VfK~~~d~~~G-~va~~RV~sGtL~~Gd~v~~~~~~---------~~~~v~~i~~~~g~~~~~v~~a~ 352 (731)
T PRK07560 283 LNCDPNGPLVMMVTDIIVDPHAG-EVATGRVFSGTLRKGQEVYLVGAK---------KKNRVQQVGIYMGPEREEVEEIP 352 (731)
T ss_pred eccCCCCCEEEEEEeeEEcCCCC-eEEEEEEEEeEEcCCCEEEEcCCC---------CceEeheehhhhcCCCceeeeEC
Confidence 67999999999999999998865 599999999999999999998753 35789999999999999999999
Q ss_pred CCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcC
Q psy15088 865 AGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EES 943 (1291)
Q Consensus 865 aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~et 943 (1291)
|||||+|.|+++... ++|+++. ....+|.++.+.++|+++++|+|.+++|.++|.+||++|+++||+++|.. ++|
T Consensus 353 AGdIv~i~gl~~~~~-GdtL~~~---~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~et 428 (731)
T PRK07560 353 AGNIAAVTGLKDARA-GETVVSV---EDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEET 428 (731)
T ss_pred CCCEEEEEccccccc-CCEEeCC---CccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCC
Confidence 999999999987653 7888764 23566777754569999999999999999999999999999999999988 689
Q ss_pred CcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccce
Q psy15088 944 GEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQI 1023 (1291)
Q Consensus 944 Ge~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~ 1023 (1291)
||++|+|+||||||+|++||+++| ++++++|+|.|+|||||.+++.. +...++++|++++++++|++++..+.++.+.
T Consensus 429 ge~~l~g~GElHLei~~~rL~~~~-~vev~~~~p~V~yrETI~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~ 506 (731)
T PRK07560 429 GEHLLSGMGELHLEVITYRIKRDY-GIEVVTSEPIVVYRETVRGKSQV-VEGKSPNKHNRFYISVEPLEEEVIEAIKEGE 506 (731)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHh-CCceEecCCEEEEEEecccCccc-eEEECCCCceEEEEEEEECCHHHHHHHhcCC
Confidence 999999999999999999999999 79999999999999999988642 3455889999999999999998777777776
Q ss_pred eccccchhHHHHHHhh---hccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCC
Q psy15088 1024 VHIAWNKKRLGEFFQS---KYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCE 1100 (1291)
Q Consensus 1024 ~~~~~~~~~~~~~~~~---~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~ 1100 (1291)
.....+.+.+ +.|.. ++||+...++++|+|+ ++|+|+|.+.+.. +.++++++|++||+||+++|||||
T Consensus 507 ~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~----~~~~f~~~~~gg~----~~~~~~~av~~G~~~a~~~GpL~g 577 (731)
T PRK07560 507 ISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY----NGNVFIDMTKGIQ----YLNEVMELIIEGFREAMKEGPLAA 577 (731)
T ss_pred cccccchHHH-HHHHHhhhhcCCchhhhhceeecc----CCeEEEECCCCcc----CHHHHHHHHHHHHHHHHhcCCccC
Confidence 5544444444 55655 8999999999999995 6899999875432 567899999999999999999999
Q ss_pred CCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecc
Q psy15088 1101 EPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDA 1180 (1291)
Q Consensus 1101 epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~ 1180 (1291)
|||+||+|+|.|+.+|.+..+++++|+++++++||++||++|+|+||||||.|+|+||++++|.|+++|++|||+|++++
T Consensus 578 ~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~ 657 (731)
T PRK07560 578 EPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDME 657 (731)
T ss_pred CceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeee
Confidence 99999999999999998888888999999999999999999999999999999999999999999999999999999776
Q ss_pred ccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCCCCcccHHHHHHHHHhhcc
Q psy15088 1181 PVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRK 1260 (1291)
Q Consensus 1181 ~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~~~~~~~a~~~~~~iR~rK 1260 (1291)
. .++.++|+|++|++|+|||+++||+.|+|+|+|+|.|+||+++|+ ++|+++|.++|+||
T Consensus 658 ~--~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~------------------~~~~~ii~~~r~rK 717 (731)
T PRK07560 658 Q--EGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPD------------------SLQLDIVRQIRERK 717 (731)
T ss_pred c--CCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCH------------------HHHHHHHHHHHhhC
Confidence 4 336799999999999999999999999999999999999999983 68999999999999
Q ss_pred CCCCCCC-ccccCC
Q psy15088 1261 GLSEDVS-INKFFD 1273 (1291)
Q Consensus 1261 Gl~~~~~-~~~~~d 1273 (1291)
||+++++ +++|+|
T Consensus 718 Gl~~~~~~~~~~~~ 731 (731)
T PRK07560 718 GLKPELPKPEDFLS 731 (731)
T ss_pred CCCCCCCChhhhcC
Confidence 9999996 777765
No 8
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=6.6e-103 Score=990.89 Aligned_cols=709 Identities=26% Similarity=0.451 Sum_probs=561.4
Q ss_pred hHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC
Q psy15088 387 MEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 387 ~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
.+++.++|..++++|||+|+||+|||||||+++|++.+|.+... ..++.+++|+.++|++||+||+++.+++.| ..+
T Consensus 6 ~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~-~~~ 82 (720)
T TIGR00490 6 IDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVH-EYE 82 (720)
T ss_pred HHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEE-eec
Confidence 46788899999999999999999999999999999998876542 345677899999999999999999887544 234
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCc
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDV 544 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~ 544 (1291)
++++.++|+|||||..+. +..++..+|++|+|+|+..|+..||+.+++.+...++|+++ |+| | +|+...++
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~iv--viN----K-iD~~~~~~ 155 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVL--FIN----K-VDRLINEL 155 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEE--EEE----C-hhcccchh
Confidence 478999999999997654 45566788999999999999999999999998888888865 887 6 78877777
Q ss_pred cCcHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCC
Q psy15088 545 DSSLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFP 624 (1291)
Q Consensus 545 ~~~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfP 624 (1291)
+..+..+..+++..+.. ...++ . ...| . .+. + .|..+ |
T Consensus 156 ~~~~~~~~~~~~~~~~~------v~~~~----~---~~~~--~--~~~-------------~----------~~~~~--~ 193 (720)
T TIGR00490 156 KLTPQELQERFIKIITE------VNKLI----K---AMAP--E--EFR-------------D----------KWKVR--V 193 (720)
T ss_pred cCCHHHHHHHHhhhhHH------HHhhh----h---ccCC--H--HHh-------------h----------ceEec--h
Confidence 77777777666431111 01111 0 0000 0 000 0 00000 0
Q ss_pred CccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCC--CCCCCCCHHHHHHHHhhccccccceEEeecchhhh
Q psy15088 625 RNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEG--SGRADDNEESLKKRISVYNTETMPIIKFFEAKNLV 702 (1291)
Q Consensus 625 r~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~--~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~ 702 (1291)
.+.+ . .+..++++.+... +.....+.+.+.+.+.... ..++.
T Consensus 194 ~~~~------~-------------------~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~ 237 (720)
T TIGR00490 194 EDGS------V-------------------AFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDK-----------QKELA 237 (720)
T ss_pred hhCC------H-------------------HHHhhhhcccccchhHhhcCCCHHHHHHHHHhcc-----------HHHHh
Confidence 0000 0 0000000000000 0000001111111110000 00001
Q ss_pred hhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhh
Q psy15088 703 KRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVAR 782 (1291)
Q Consensus 703 ~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1291)
.++|-.+.|||+|++++|||.++++++++.+|.+.. +++...
T Consensus 238 ~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 279 (720)
T TIGR00490 238 KKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDL--------------------------------------NSEVGK 279 (720)
T ss_pred hhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCC--------------------------------------Cccchh
Confidence 133556899999999999999888777776665432 112223
Q ss_pred hhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeece
Q psy15088 783 DMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNR 862 (1291)
Q Consensus 783 ~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~ 862 (1291)
.+.+||+++|++++|||+..+++.|. ++|+|||||+|++||.|++.+++ ..++|++|+.++|++.+++++
T Consensus 280 ~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL~~G~~l~~~~~~---------~~~kv~~l~~~~g~~~~~v~~ 349 (720)
T TIGR00490 280 AMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTIRPGMEVYIVDRK---------AKARIQQVGVYMGPERVEVDE 349 (720)
T ss_pred hcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEEcCCCEEEEcCCC---------CeeEeeEEEEeccCCccCccE
Confidence 45789999999999999999887665 99999999999999999998753 468899999999999999999
Q ss_pred eeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-C
Q psy15088 863 VPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-E 941 (1291)
Q Consensus 863 a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~ 941 (1291)
|.|||||+|.|+++.. +++||++.. ..+.+|.++.+.++|+++++|+|.+++|.++|.+||++|+++||++++.. +
T Consensus 350 a~aGdIv~i~gl~~~~-~GdtL~~~~--~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~ 426 (720)
T TIGR00490 350 IPAGNIVAVIGLKDAV-AGETICTTV--ENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINE 426 (720)
T ss_pred ECCCCEEEEECccccc-cCceeecCC--cccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECC
Confidence 9999999999998764 488987642 23445666654468999999999999999999999999999999999987 7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCccccccccc
Q psy15088 942 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIEN 1021 (1291)
Q Consensus 942 etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~ 1021 (1291)
+|||++|+||||||||+|++||+++| ++++++|+|+|+|||||++.++. ....++++|++++++++|++++..+.++.
T Consensus 427 etge~il~g~GElHLei~~~rL~~~~-~vev~~~~P~V~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~ 504 (720)
T TIGR00490 427 ETGEHLISGMGELHLEIIVEKIREDY-GLDVETSPPIVVYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKE 504 (720)
T ss_pred CCCCeEEEEccceeHHHHHHHHHHHh-CCceeecCCEEEEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhc
Confidence 89999999999999999999999999 79999999999999999988763 23455889999999999999998888887
Q ss_pred ceec-cccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCC
Q psy15088 1022 QIVH-IAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCE 1100 (1291)
Q Consensus 1022 ~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~ 1100 (1291)
+.+. +.+..+.+..+|. +|||+.+.+++||+|| ++|+|+|.+... .+.++++++|.+||+||+++|||||
T Consensus 505 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~----~~~~f~~~~~gg----~i~~~~~~av~~G~~~a~~~GpL~g 575 (720)
T TIGR00490 505 GKIVDMKMKKKERRRLLI-EAGMDSEEAARVEEYY----EGNLFINMTRGI----QYLDETKELILEGFREAMRNGPIAR 575 (720)
T ss_pred ccccccccchHHHHHHHH-hcCCchhhhcCEEEec----CCeEEEECCCCC----CCHHHHHHHHHHHHHHHHHcCCcCC
Confidence 7553 2355677788885 6999999999999997 589999976433 2567889999999999999999999
Q ss_pred CCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecc
Q psy15088 1101 EPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDA 1180 (1291)
Q Consensus 1101 epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~ 1180 (1291)
|||+||+|+|.|+.+|.+..+++.+|+++++++||++||++|+|+||||||.|||+||.+++|+|+++|++|||+|++++
T Consensus 576 ~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~ 655 (720)
T TIGR00490 576 EKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMK 655 (720)
T ss_pred CcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeec
Confidence 99999999999999998777888899999999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCCCCcccHHHHHHHHHhhcc
Q psy15088 1181 PVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRK 1260 (1291)
Q Consensus 1181 ~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~~~~~~~a~~~~~~iR~rK 1260 (1291)
. +++.++|+|++|++|||||+++||++|+|+|+|+|.|+||+++|+ ++++++|.++||||
T Consensus 656 ~--~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~------------------~~~~~ii~~~r~rk 715 (720)
T TIGR00490 656 Q--EGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQ------------------NLQQEFVMEVRKRK 715 (720)
T ss_pred c--CCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCH------------------HHHHHHHHHHHhhc
Confidence 3 446899999999999999999999999999999999999999983 57899999999999
Q ss_pred CCCCC
Q psy15088 1261 GLSED 1265 (1291)
Q Consensus 1261 Gl~~~ 1265 (1291)
||+++
T Consensus 716 gl~~~ 720 (720)
T TIGR00490 716 GLKLE 720 (720)
T ss_pred CCCCC
Confidence 99875
No 9
>KOG0465|consensus
Probab=100.00 E-value=1.2e-101 Score=885.57 Aligned_cols=660 Identities=22% Similarity=0.339 Sum_probs=547.5
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+++|||+|++|.|+||||+++++++++|.+.+-..+..+.+.||+++.||+|||||+++.+++.| ++++||||||
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-----~~~~iNiIDT 111 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-----RDYRINIIDT 111 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-----ccceeEEecC
Confidence 47899999999999999999999999999888888888899999999999999999999999999 7999999999
Q ss_pred CCccc-----ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHH
Q psy15088 478 PASPV-----TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVL 552 (1291)
Q Consensus 478 pGh~~-----~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~ 552 (1291)
|||.+ .|+|+++ |+||+|+|+.+|+++||.++|+++..+++|++- ||| | ||+.++++...+.++.
T Consensus 112 PGHvDFT~EVeRALrVl---DGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~--FiN----K-mDRmGa~~~~~l~~i~ 181 (721)
T KOG0465|consen 112 PGHVDFTFEVERALRVL---DGAVLVLDAVAGVESQTETVWRQMKRYNVPRIC--FIN----K-MDRMGASPFRTLNQIR 181 (721)
T ss_pred CCceeEEEEehhhhhhc---cCeEEEEEcccceehhhHHHHHHHHhcCCCeEE--EEe----h-hhhcCCChHHHHHHHH
Confidence 99964 4688887 588999999999999999999999999999964 998 6 8999998888888888
Q ss_pred HHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc-----eeecCCCCcc
Q psy15088 553 DQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK-----FLIDGFPRNQ 627 (1291)
Q Consensus 553 ~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~-----~liDGfPr~~ 627 (1291)
.+|+ .+++ +-|+|++....| .|++|++.++.+.|.+ ...+..|.+.
T Consensus 182 ~kl~-----------~~~a--------~vqiPig~e~~f----------~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l 232 (721)
T KOG0465|consen 182 TKLN-----------HKPA--------VVQIPIGSESNF----------KGVVDLVNGKAIYWDGENGEIVRKDEIPEDL 232 (721)
T ss_pred hhcC-----------Cchh--------eeEccccccccc----------hhHHhhhhceEEEEcCCCCceeEeccCCHHH
Confidence 7764 3444 248999887766 4789999999887643 3445566553
Q ss_pred -CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhh
Q psy15088 628 -NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKR 704 (1291)
Q Consensus 628 -~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~ 704 (1291)
.++.+-+.+|.+.+ .++ ||++.+.+|+. .+.+...|+..+ .+..+.+.||||||+.+|
T Consensus 233 ~~~~~e~R~~LIE~l-------ad~-DE~l~e~fLee-------~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKN---- 293 (721)
T KOG0465|consen 233 EELAEEKRQALIETL-------ADV-DETLAEMFLEE-------EEPSAQQLKAAIRRATIKRSFVPVLCGSALKN---- 293 (721)
T ss_pred HHHHHHHHHHHHHHH-------hhh-hHHHHHHHhcc-------CCCCHHHHHHHHHHHHhhcceeeEEechhhcc----
Confidence 34455555565543 222 33455555543 346778888766 668899999999999999
Q ss_pred hchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhh
Q psy15088 705 FNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDM 784 (1291)
Q Consensus 705 ~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1291)
.|+|+|||+|++|||||.+.+.+.+.+ ..+ +++ +..
T Consensus 294 -kGVQPlLDAVvdYLPsP~Ev~n~a~~k--e~~---------------------------------------~~e--kv~ 329 (721)
T KOG0465|consen 294 -KGVQPLLDAVVDYLPSPSEVENYALNK--ETN---------------------------------------SKE--KVT 329 (721)
T ss_pred -cCcchHHHHHHHhCCChhhhccccccc--CCC---------------------------------------Ccc--ceE
Confidence 899999999999999999987654321 000 000 112
Q ss_pred hccCCCC-CeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeecee
Q psy15088 785 KACNPEG-RLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRV 863 (1291)
Q Consensus 785 ~~~d~~~-pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a 863 (1291)
....+++ |+++.+||+...+. |. +.|+|||+|+|++||.||+.. +++.+++.+|+.|+++..++|+++
T Consensus 330 l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvYqG~L~kG~~iyN~r---------tgKKvrv~RL~rmHa~~medV~~v 398 (721)
T KOG0465|consen 330 LSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVYQGTLSKGDTIYNVR---------TGKKVRVGRLVRMHANDMEDVNEV 398 (721)
T ss_pred eccCCCCCceeeeEEEeeecCc-cc-eEEEEEeeeeecCCcEEEecC---------CCceeEhHHHhHhcccccchhhhh
Confidence 2222333 99999999999887 44 999999999999999999866 567899999999999999999999
Q ss_pred eCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-Cc
Q psy15088 864 PAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EE 942 (1291)
Q Consensus 864 ~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~e 942 (1291)
.|||||++.|++.+. ++|+++.. .....+.+|.++ +||+++||+|.+.+|.+++.+||.++.+|||+++++. +|
T Consensus 399 ~AG~I~alfGidcas--GDTftd~~--~~~~~m~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E 473 (721)
T KOG0465|consen 399 LAGDICALFGIDCAS--GDTFTDKQ--NLALSMESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPE 473 (721)
T ss_pred hccceeeeecccccc--CceeccCc--cccceeeeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccc
Confidence 999999999997753 67887742 234567778775 9999999999999999999999999999999999986 89
Q ss_pred CCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeee--c--CCcceEEEEEEeecCcccccc
Q psy15088 943 SGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAE--T--PNKRNKITMIAEPLEKGLAED 1018 (1291)
Q Consensus 943 tGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~--s--~nk~~~i~~~~ePl~~~~~~~ 1018 (1291)
+||++|+|||||||||..+||+++| |+++.+++|+|+|||||+.+.+..+.++ | ..+++++.-.++|++.+..+.
T Consensus 474 ~kqTvIsGMGELHLEIy~eRl~rEy-~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~ 552 (721)
T KOG0465|consen 474 MKQTVISGMGELHLEIYVERLVREY-KVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEK 552 (721)
T ss_pred cccchhhccchhhHHHHHHHHHHHh-CCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCce
Confidence 9999999999999999999999999 8999999999999999998887755332 2 345688999999998765433
Q ss_pred cccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCcc
Q psy15088 1019 IENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPL 1098 (1291)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL 1098 (1291)
++ +. + |.+| +.+|+. |+ -++.+||..+++.|||
T Consensus 553 ~e-----F~--------------~---------~~~g-----------~~~P~~----f~----pa~ekg~~e~~~~G~L 585 (721)
T KOG0465|consen 553 FE-----FS--------------D---------EIVG-----------GNVPKQ----FI----PAVEKGFEEIVAKGPL 585 (721)
T ss_pred EE-----EE--------------e---------cccC-----------CCCchh----HH----HHHHHHHHHHHhcCCc
Confidence 21 00 0 1122 224542 44 4578899999999999
Q ss_pred CCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEee
Q psy15088 1099 CEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQ 1178 (1291)
Q Consensus 1099 ~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~ 1178 (1291)
.|.|+.|++|.|.|+..|.++. +.-.++.+++.|+++||.+|+|++|||||.|||++|+++.|.|+++|++|+|.|.+
T Consensus 586 ~ghpl~~~r~~l~Dga~h~vds--~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~ 663 (721)
T KOG0465|consen 586 IGHPLSNLRIVLQDGAHHPVDS--SELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITG 663 (721)
T ss_pred cCCcccceEEEEecCCcCcccc--cHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEec
Confidence 9999999999999999997642 22347788999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcC
Q psy15088 1179 DAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 1232 (1291)
Q Consensus 1179 ~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~ 1232 (1291)
.+.. .+.++|+|.+|+++||||+++|||.|+|+|.|+|+|++|++++.+.++
T Consensus 664 ~d~~--~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~ 715 (721)
T KOG0465|consen 664 IDSS--EDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQD 715 (721)
T ss_pred ccCC--CceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHH
Confidence 7653 368999999999999999999999999999999999999999976554
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=9.9e-97 Score=933.15 Aligned_cols=660 Identities=23% Similarity=0.326 Sum_probs=529.9
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
+++||||+|+||+|||||||+|+|++.++.+...+.+.++.+++|++++|++||+|++++.++|.| +++.|+|||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liD 79 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-----KGHRINIID 79 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-----CCEEEEEEc
Confidence 568999999999999999999999999887755555677899999999999999999999999999 899999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHH
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ 554 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~ 554 (1291)
||||.++. +..++..+|++|+|+|+..|++.||++++..+...++|+++ ||| | +|....+.+..+.++.+.
T Consensus 80 TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv--~iN----K-~D~~~~~~~~~~~~i~~~ 152 (691)
T PRK12739 80 TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIV--FVN----K-MDRIGADFFRSVEQIKDR 152 (691)
T ss_pred CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEE----C-CCCCCCCHHHHHHHHHHH
Confidence 99997543 55666677999999999999999999999999999999976 787 5 676544433334444444
Q ss_pred hCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc------eeecCCCCccC
Q psy15088 555 LGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK------FLIDGFPRNQN 628 (1291)
Q Consensus 555 lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~------~liDGfPr~~~ 628 (1291)
++. .+. ..++|++....| .+++|++++....|.. |-...+|..
T Consensus 153 l~~-----------~~~--------~~~iPis~~~~f----------~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~-- 201 (691)
T PRK12739 153 LGA-----------NAV--------PIQLPIGAEDDF----------KGVIDLIKMKAIIWDDETLGAKYEEEDIPAD-- 201 (691)
T ss_pred hCC-----------Cce--------eEEecccccccc----------eEEEEcchhhhhhccCCCCCCeeEEcCCCHH--
Confidence 332 110 235787765544 4678888776553321 111122211
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhc
Q psy15088 629 NLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFN 706 (1291)
Q Consensus 629 qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~ 706 (1291)
......+....+.....+. ++.+++++++.. +.+.+.+++.+ ......+.||+|+|+.++ .
T Consensus 202 ----~~~~~~~~~~~l~e~v~e~-dd~lle~yl~~~-------~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~-----~ 264 (691)
T PRK12739 202 ----LKEKAEEYREKLIEAVAEV-DEELMEKYLEGE-------EITEEEIKAAIRKATINMEFFPVLCGSAFKN-----K 264 (691)
T ss_pred ----HHHHHHHHHHHHHHhhhhc-CHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCEEEEEeccccCC-----c
Confidence 1111111111222222233 456777888643 36678888777 346789999999999999 8
Q ss_pred hhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhc
Q psy15088 707 AEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKA 786 (1291)
Q Consensus 707 g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1291)
|++.|||+|++++|+|.+++..+....+ +. ...+..
T Consensus 265 Gv~~LLd~I~~~lPsP~~~~~~~~~~~~------------------------------------------~~--~~~~~~ 300 (691)
T PRK12739 265 GVQPLLDAVVDYLPSPLDVPAIKGINPD------------------------------------------TE--EEIERP 300 (691)
T ss_pred cHHHHHHHHHHHCCChhhccccccccCC------------------------------------------CC--cceeec
Confidence 9999999999999999887654322110 00 234577
Q ss_pred cCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCC
Q psy15088 787 CNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866 (1291)
Q Consensus 787 ~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aG 866 (1291)
||+++|++++|||++++++.|. ++|+|||||+|++||.|++.. ..+.++|++||.++|++..++++++||
T Consensus 301 ~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGtL~~g~~v~~~~---------~~~~~~v~~l~~~~g~~~~~v~~~~aG 370 (691)
T PRK12739 301 ASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGVLESGSYVLNTT---------KGKKERIGRLLQMHANKREEIKEVYAG 370 (691)
T ss_pred cCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeEEcCCCEEEeCC---------CCceEEecceEEEecCCcccccccCCC
Confidence 9999999999999999988765 999999999999999998644 234688999999999999999999999
Q ss_pred CeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCc
Q psy15088 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGE 945 (1291)
Q Consensus 867 nIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe 945 (1291)
|||+|.|+++.. .++||++. ..+..+.++.++ +|+++++|||.+++|+++|.+||++|+++||+++|+. ++|||
T Consensus 371 dI~~i~gl~~~~-~gdtl~~~---~~~~~l~~~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge 445 (691)
T PRK12739 371 DIAAAVGLKDTT-TGDTLCDE---KAPIILESMEFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQ 445 (691)
T ss_pred CEEEEeCCCccc-CCCEEeCC---CCccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCC
Confidence 999999998853 36699764 234567788884 8999999999999999999999999999999999997 78999
Q ss_pred EEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeeccccee--eeec--CCcceEEEEEEeecCccccccccc
Q psy15088 946 HVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC--FAET--PNKRNKITMIAEPLEKGLAEDIEN 1021 (1291)
Q Consensus 946 ~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~--~~~s--~nk~~~i~~~~ePl~~~~~~~~~~ 1021 (1291)
++|+||||||||+|++||+++| ++++++|+|+|+|||||.+.+.... ...+ .+++++++++++|++.+.+..+.+
T Consensus 446 ~il~g~GelHLei~~~rL~~~f-~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~ 524 (691)
T PRK12739 446 TIISGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVN 524 (691)
T ss_pred EEEEEecHHHHHHHHHHHHHHh-CCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEE
Confidence 9999999999999999999999 7999999999999999998765432 2223 235689999999998763322211
Q ss_pred ceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCC
Q psy15088 1022 QIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101 (1291)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~e 1101 (1291)
. +..+.+ .+.++++|++||+||+++||||||
T Consensus 525 ~-----------------------------------------i~~g~~--------~~~~~~av~~G~~~a~~~GpL~g~ 555 (691)
T PRK12739 525 K-----------------------------------------IVGGVI--------PKEYIPAVEKGLEEAMKNGVLAGY 555 (691)
T ss_pred e-----------------------------------------ccCCcC--------cHHHHHHHHHHHHHHHhcCCcCCC
Confidence 1 011222 346778999999999999999999
Q ss_pred CceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccc
Q psy15088 1102 PIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAP 1181 (1291)
Q Consensus 1102 pv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~ 1181 (1291)
||+||+|+|.|+.+|+.+. +.+++.+++++||++|+++|+|+||||||.|+|+||++++|+|+++|++|||+|+++++
T Consensus 556 pv~~v~v~l~d~~~h~~~s--~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~ 633 (691)
T PRK12739 556 PMVDVKATLYDGSYHDVDS--SELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEA 633 (691)
T ss_pred ceeeEEEEEEEeccCCCCC--cHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccc
Confidence 9999999999999997543 34577899999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCC
Q psy15088 1182 VPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGD 1229 (1291)
Q Consensus 1182 ~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~d 1229 (1291)
..+ .++|+|++|++|+|||+++||+.|+|+|++++.|+||+++|++
T Consensus 634 ~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~ 679 (691)
T PRK12739 634 RGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKN 679 (691)
T ss_pred cCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHH
Confidence 654 5789999999999999999999999999999999999999853
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.2e-96 Score=931.55 Aligned_cols=661 Identities=23% Similarity=0.333 Sum_probs=528.9
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
+++||||||+||+|||||||+|+|++.++.+...+.+.++++++|+.++|++||+|++++.+++.| +++.|+|||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-----~~~~~~liD 81 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-----KDHRINIID 81 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-----CCeEEEEEe
Confidence 578999999999999999999999999887765556677899999999999999999999999999 799999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHH
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ 554 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~ 554 (1291)
||||.++. +..++..+|++|+|+|+..|++.||++++..+...++|+++ ||| | +|....+.+..+.++.++
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv--~vN----K-~D~~~~~~~~~~~~i~~~ 154 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIA--FVN----K-MDRTGADFYRVVEQIKDR 154 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEE--EEE----C-CCCCCCCHHHHHHHHHHH
Confidence 99997654 55566677899999999999999999999999999999976 887 6 676644444444555444
Q ss_pred hCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc------eeecCCCCccC
Q psy15088 555 LGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK------FLIDGFPRNQN 628 (1291)
Q Consensus 555 lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~------~liDGfPr~~~ 628 (1291)
++. .+ -+.++|++....| .+++|++......|.. +....+|..
T Consensus 155 l~~-----------~~--------~~~~ipisa~~~f----------~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-- 203 (693)
T PRK00007 155 LGA-----------NP--------VPIQLPIGAEDDF----------KGVVDLVKMKAIIWNEADLGATFEYEEIPAD-- 203 (693)
T ss_pred hCC-----------Ce--------eeEEecCccCCcc----------eEEEEcceeeeeecccCCCCCcceEccCCHH--
Confidence 432 11 1235787665444 4678888765443310 111112211
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHh--hccccccceEEeecchhhhhhhc
Q psy15088 629 NLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRIS--VYNTETMPIIKFFEAKNLVKRFN 706 (1291)
Q Consensus 629 qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~--~~~~~~~PVl~~sa~k~~~~~~~ 706 (1291)
......+....+.....+. ++.+++++++.. +.+.+.+++.++ .......||+|+|+.++ .
T Consensus 204 ----~~~~~~~~~~~l~e~v~e~-dd~lle~yle~~-------~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~-----~ 266 (693)
T PRK00007 204 ----LKDKAEEYREKLIEAAAEA-DEELMEKYLEGE-------ELTEEEIKAALRKATIANEIVPVLCGSAFKN-----K 266 (693)
T ss_pred ----HHHHHHHHHHHHHHHHHcc-CHHHHHHHhCcC-------CCCHHHHHHHHHHHHhcCcEEEEEecccccC-----c
Confidence 1111112222222223333 456778888632 467788887763 45679999999999999 8
Q ss_pred hhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhc
Q psy15088 707 AEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKA 786 (1291)
Q Consensus 707 g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1291)
|++.|||+|++++|+|.+++..+ |.. .+........+
T Consensus 267 Gv~~LLd~I~~~lPsP~~~~~~~------~~~-------------------------------------~~~~~~~~~~~ 303 (693)
T PRK00007 267 GVQPLLDAVVDYLPSPLDVPAIK------GIL-------------------------------------PDGEEEEVERK 303 (693)
T ss_pred CHHHHHHHHHHHCCChhhccccc------ccC-------------------------------------CCccccceeec
Confidence 99999999999999998765321 110 01112234577
Q ss_pred cCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCC
Q psy15088 787 CNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866 (1291)
Q Consensus 787 ~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aG 866 (1291)
||+++|++++|||+..+++.|+ ++|+|||||+|++||+|++.. ..+.++|++|+.++|++..++++++||
T Consensus 304 ~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sGtl~~g~~v~~~~---------~~~~eki~~l~~~~g~~~~~v~~~~aG 373 (693)
T PRK00007 304 ASDDEPFSALAFKIMTDPFVGK-LTFFRVYSGVLESGSYVLNST---------KGKKERIGRILQMHANKREEIKEVRAG 373 (693)
T ss_pred CCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEeCC---------CCceeEeceeEEeccCCcccccccCCC
Confidence 9999999999999999988765 999999999999999998643 234678999999999999999999999
Q ss_pred CeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCc
Q psy15088 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGE 945 (1291)
Q Consensus 867 nIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe 945 (1291)
|||+|.|+++.. .++||++. ..+..+.++.++ +|+++++|||.++.|.++|.+||++|+++||+++|.. ++|||
T Consensus 374 dI~~i~gl~~~~-~GdtL~~~---~~~~~l~~~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge 448 (693)
T PRK00007 374 DIAAAVGLKDTT-TGDTLCDE---KNPIILESMEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQ 448 (693)
T ss_pred cEEEEeCCccCC-cCCEeeCC---CCccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCC
Confidence 999999998764 47799764 234567777774 8999999999999999999999999999999999998 68999
Q ss_pred EEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccce--eeeec--CCcceEEEEEEeecCccccccccc
Q psy15088 946 HVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLK--CFAET--PNKRNKITMIAEPLEKGLAEDIEN 1021 (1291)
Q Consensus 946 ~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~--~~~~s--~nk~~~i~~~~ePl~~~~~~~~~~ 1021 (1291)
++|+|+||||||+|++||+++| ++++++|+|+|+|||||++++... +...+ ..+++.++++++|++.+.+..+++
T Consensus 449 ~~l~g~GelHLei~~~rL~~~~-~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~ 527 (693)
T PRK00007 449 TIIAGMGELHLDIIVDRMKREF-KVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVN 527 (693)
T ss_pred EEEEEecHHhHHHHHHHHHHHh-CCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEee
Confidence 9999999999999999999999 799999999999999999876532 22222 124689999999998653322221
Q ss_pred ceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCC
Q psy15088 1022 QIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101 (1291)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~e 1101 (1291)
-++.+++| ++++++|.+||+||+++||||||
T Consensus 528 -----------------------------------------~i~~g~~~--------~~~~~av~~G~~~a~~~GpL~g~ 558 (693)
T PRK00007 528 -----------------------------------------KIVGGVIP--------KEYIPAVDKGIQEAMESGVLAGY 558 (693)
T ss_pred -----------------------------------------cccCCcCc--------HHHHHHHHHHHHHHHhcCCcCCC
Confidence 11223333 35678999999999999999999
Q ss_pred CceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccc
Q psy15088 1102 PIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAP 1181 (1291)
Q Consensus 1102 pv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~ 1181 (1291)
||+||+|+|.|+.+|+.+ .+.+++..++++||++|+++|+|+||||||.|+|+||++++|+|+++|++|||+|.++++
T Consensus 559 pv~~v~v~l~d~~~~~~d--s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~ 636 (693)
T PRK00007 559 PVVDVKVTLFDGSYHDVD--SSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMED 636 (693)
T ss_pred ceeeEEEEEEecccCCCC--CcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccc
Confidence 999999999999999743 244678889999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCC
Q psy15088 1182 VPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGD 1229 (1291)
Q Consensus 1182 ~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~d 1229 (1291)
. ++.+.|+|.+|++|+|||+++||+.|+|+|+|++.|+||+++|++
T Consensus 637 ~--~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~ 682 (693)
T PRK00007 637 R--GGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKN 682 (693)
T ss_pred c--CCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHH
Confidence 3 347899999999999999999999999999999999999999964
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=9.1e-95 Score=916.14 Aligned_cols=661 Identities=23% Similarity=0.308 Sum_probs=526.4
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
.+++||||+|+||+|||||||+|+|++.++.+...+.+.++++++|+.++|++||+|++++..++.| +++.++|+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-----~~~~i~li 80 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-----KGHRINII 80 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-----CCeEEEEE
Confidence 3578999999999999999999999999988765555667889999999999999999999999999 78999999
Q ss_pred eCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHH
Q psy15088 476 DTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLD 553 (1291)
Q Consensus 476 DTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~ 553 (1291)
|||||..+. ...++..+|++++|+|+..|+..|++.+++.+...++|+++ ++| | +|....+.+..+..+.+
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv--viN----K-~D~~~~~~~~~~~~i~~ 153 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIA--FVN----K-MDKTGANFLRVVNQIKQ 153 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEE--EEE----C-CCCCCCCHHHHHHHHHH
Confidence 999997553 44556677999999999999999999999999989999876 787 5 66654443334445544
Q ss_pred HhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccC-----ceeecCCCCccC
Q psy15088 554 QLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSN-----KFLIDGFPRNQN 628 (1291)
Q Consensus 554 ~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~-----~~liDGfPr~~~ 628 (1291)
.++. .+. +.++|++....| .+++|++.+....+. .+....+|.+..
T Consensus 154 ~l~~-----------~~~--------~~~ipis~~~~~----------~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (689)
T TIGR00484 154 RLGA-----------NAV--------PIQLPIGAEDNF----------IGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLL 204 (689)
T ss_pred HhCC-----------Cce--------eEEeccccCCCc----------eEEEECccceEEecccCCCceeeeccCCHHHH
Confidence 4432 111 236787665443 467888876433211 011111222111
Q ss_pred -ccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhh
Q psy15088 629 -NLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRF 705 (1291)
Q Consensus 629 -qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~ 705 (1291)
.+..++..+.+. ..+. ++.+++++++.. +.+.+.+.+.+ ......+.||+++|+.++
T Consensus 205 ~~~~~~~~~l~e~-------v~e~-dd~lle~yle~~-------~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~----- 264 (689)
T TIGR00484 205 EQAKELRENLVEA-------VAEF-DEELMEKYLEGE-------ELTIEEIKNAIRKGVLNCEFFPVLCGSAFKN----- 264 (689)
T ss_pred HHHHHHHHHHHHH-------HHhc-CHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCCEEEEEeccccCC-----
Confidence 122333333332 2233 456777888632 35677777766 335689999999999999
Q ss_pred chhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhh
Q psy15088 706 NAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMK 785 (1291)
Q Consensus 706 ~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1291)
.|++.|||+|+.++|+|.+++..+ +.. .+.......
T Consensus 265 ~Gv~~LLd~I~~~lPsP~~~~~~~------~~~--------------------------------------~~~~~~~~~ 300 (689)
T TIGR00484 265 KGVQLLLDAVVDYLPSPTDVPAIK------GID--------------------------------------PDTEKEIER 300 (689)
T ss_pred ccHHHHHHHHHHHCCCchhccccc------ccC--------------------------------------CCCCceeee
Confidence 899999999999999998754321 100 000112346
Q ss_pred ccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeC
Q psy15088 786 ACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPA 865 (1291)
Q Consensus 786 ~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~a 865 (1291)
.|++++|++++|||+..+++.| +++|+|||||+|++||+|++..+ ...++|++|+.++|++..++++++|
T Consensus 301 ~~~~~~~l~a~VfK~~~d~~~G-~i~~~RV~sGtL~~g~~v~~~~~---------~~~~~i~~l~~~~g~~~~~v~~~~a 370 (689)
T TIGR00484 301 KASDDEPFSALAFKVATDPFVG-QLTFVRVYSGVLKSGSYVKNSRK---------NKKERVGRLVKMHANNREEIKEVRA 370 (689)
T ss_pred cCCCCCceEEEEEEeeecCCCC-eEEEEEEEEeEEcCCCEEEeCCC---------CceEEecceEEeecCCcccccccCC
Confidence 7899999999999999998876 59999999999999999997542 3467899999999999999999999
Q ss_pred CCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCC
Q psy15088 866 GNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESG 944 (1291)
Q Consensus 866 GnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etG 944 (1291)
||||+|.|+++. .+++||++. ..+..+.++.+ ++|+++++|+|.++.|+++|.+||++|+++||+|+|+. ++||
T Consensus 371 GdI~~i~gl~~~-~~gdtl~~~---~~~~~~~~~~~-~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etg 445 (689)
T TIGR00484 371 GDICAAIGLKDT-TTGDTLCDP---KIDVILERMEF-PEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETG 445 (689)
T ss_pred CCEEEEcCCCCC-CCCCEEeCC---CCccccCCCCC-CCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCC
Confidence 999999999876 458899764 23456677777 48999999999999999999999999999999999998 6899
Q ss_pred cEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeeccccee--eeecC--CcceEEEEEEeecCcccccccc
Q psy15088 945 EHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC--FAETP--NKRNKITMIAEPLEKGLAEDIE 1020 (1291)
Q Consensus 945 e~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~--~~~s~--nk~~~i~~~~ePl~~~~~~~~~ 1020 (1291)
|++|+||||||||+|++||+++| ++++++|+|+|+|||||++.++... ...+. ..+++++++++|++.+ +..+.
T Consensus 446 e~il~g~GelHLei~~~~L~~~~-~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~-g~~~~ 523 (689)
T TIGR00484 446 QTIIAGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFV 523 (689)
T ss_pred CEEEEEeeHHHHHHHHHHHHHHh-CCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCC-CcEEE
Confidence 99999999999999999999999 7999999999999999998765322 22222 2468999999999863 11111
Q ss_pred cceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCC
Q psy15088 1021 NQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCE 1100 (1291)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~ 1100 (1291)
|-+.++++|. +++++|.+||+||+++|||||
T Consensus 524 -----------------------------------------~~i~~g~~~~--------~~~~av~~g~~~a~~~GpL~g 554 (689)
T TIGR00484 524 -----------------------------------------NEIKGGVIPR--------EYIPAVDKGLQEAMESGPLAG 554 (689)
T ss_pred -----------------------------------------EeccCCcCCH--------HHHHHHHHHHHHHHhcCCcCC
Confidence 1122344443 456889999999999999999
Q ss_pred CCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecc
Q psy15088 1101 EPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDA 1180 (1291)
Q Consensus 1101 epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~ 1180 (1291)
|||+||+|+|+|+.+|+.+.+ .+++.+++++||++|+++|+|+||||||.|+|+||++++|+|+++|++|||+|++++
T Consensus 555 ~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~ 632 (689)
T TIGR00484 555 YPVVDIKATLFDGSYHDVDSS--EMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGME 632 (689)
T ss_pred CceeeEEEEEEEeecCCCCCC--HHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEeccc
Confidence 999999999999999975433 445668999999999999999999999999999999999999999999999999776
Q ss_pred ccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCc
Q psy15088 1181 PVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPL 1231 (1291)
Q Consensus 1181 ~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~ 1231 (1291)
+. ++.+.|+|++|++|+|||+++||+.|+|+|+|++.|+||++||++++
T Consensus 633 ~~--~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~ 681 (689)
T TIGR00484 633 AR--GNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVA 681 (689)
T ss_pred cc--CCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHH
Confidence 53 36899999999999999999999999999999999999999997654
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=5.9e-93 Score=902.45 Aligned_cols=663 Identities=24% Similarity=0.332 Sum_probs=534.9
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
++++|||+|+||+|||||||+++|++.++.+...+.++.+.+++|+.+.|++||+|+++...++.| +++.++++|
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-----~~~~i~liD 79 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-----DNHRINLID 79 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-----CCEEEEEEE
Confidence 467899999999999999999999999888776666777889999999999999999999999999 789999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHH
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ 554 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~ 554 (1291)
||||.++. +...+..+|++++|+|+..+.+.++..++..+...++|.++ |+| | +|....+.+..+.++.+.
T Consensus 80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ii--viN----K-~D~~~~~~~~~~~~i~~~ 152 (687)
T PRK13351 80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLI--FIN----K-MDRVGADLFKVLEDIEER 152 (687)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEE--EEE----C-CCCCCCCHHHHHHHHHHH
Confidence 99997654 44556677999999999999999999999999888999876 777 5 576655555555666555
Q ss_pred hCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc------eeecCCCCccC
Q psy15088 555 LGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK------FLIDGFPRNQN 628 (1291)
Q Consensus 555 lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~------~liDGfPr~~~ 628 (1291)
++... . ..|+|++.+..| .+++|++.+....|.. |.....|
T Consensus 153 l~~~~-----------~--------~~~~P~~~~~~~----------~g~id~~~~~~~~~~~~~~~~~~~~~~~~---- 199 (687)
T PRK13351 153 FGKRP-----------L--------PLQLPIGSEDGF----------EGVVDLITEPELHFSEGDGGSTVEEGPIP---- 199 (687)
T ss_pred HCCCe-----------E--------EEEeccccCCce----------EEEEECccceEEecccCCCCCceEEccCC----
Confidence 54311 1 246888776655 4678888776543311 1111112
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhc
Q psy15088 629 NLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFN 706 (1291)
Q Consensus 629 qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~ 706 (1291)
..|.....+....+.....+. ++.+++++++.. ..+.+.++..+ ....+...||+|+|+.++ .
T Consensus 200 --~~~~~~~~~~~~~l~e~~~~~-d~~lle~~l~~~-------~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~-----~ 264 (687)
T PRK13351 200 --EELLEEVEEAREKLIEALAEF-DDELLELYLEGE-------ELSAEQLRAPLREGTRSGHLVPVLFGSALKN-----I 264 (687)
T ss_pred --HHHHHHHHHHHHHHHHHHHhc-CHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhCCEEEEEecccCcC-----c
Confidence 123322222222333333444 357788888632 35666676655 335678999999999999 9
Q ss_pred hhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhc
Q psy15088 707 AEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKA 786 (1291)
Q Consensus 707 g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1291)
|++.|||+|+.++|+|.++++.+... +. .. ....+
T Consensus 265 Gv~~LLd~I~~~lPsP~~~~~~~~~~---~~---------------------------------------~~---~~~~~ 299 (687)
T PRK13351 265 GIEPLLDAVVDYLPSPLEVPPPRGSK---DN---------------------------------------GK---PVKVD 299 (687)
T ss_pred cHHHHHHHHHHHCCChhhcccccccC---CC---------------------------------------CC---ceeec
Confidence 99999999999999998765433211 00 00 11257
Q ss_pred cCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCC
Q psy15088 787 CNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866 (1291)
Q Consensus 787 ~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aG 866 (1291)
||+++|++++|||++.+++.|. ++|+|||||+|++||+|++.++ ...++|++|+.++|++..++++++||
T Consensus 300 ~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGtl~~g~~v~~~~~---------~~~~~i~~i~~~~g~~~~~v~~~~aG 369 (687)
T PRK13351 300 PDPEKPLLALVFKVQYDPYAGK-LTYLRVYSGTLRAGSQLYNGTG---------GKREKVGRLFRLQGNKREEVDRAKAG 369 (687)
T ss_pred CCCCCCeEEEEEEeeecCCCce-EEEEEEeEEEEcCCCEEEeCCC---------CCceEeeeEEEEccCCeeECCccCCC
Confidence 8999999999999999988765 9999999999999999999774 24688999999999999999999999
Q ss_pred CeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCc
Q psy15088 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGE 945 (1291)
Q Consensus 867 nIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe 945 (1291)
||+++.|+++.. .++|+++.. ....+.++.+ ++|+++++|||.+++|.++|.+||++|+++||+++++. ++|||
T Consensus 370 dI~~i~gl~~~~-~gdtl~~~~---~~~~~~~~~~-~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge 444 (687)
T PRK13351 370 DIVAVAGLKELE-TGDTLHDSA---DPVLLELLTF-PEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQ 444 (687)
T ss_pred CEEEEECcccCc-cCCEEeCCC---CccccCCCCC-CCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCC
Confidence 999999999875 378997652 2345666666 58999999999999999999999999999999999997 69999
Q ss_pred EEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccce--eeeecC--CcceEEEEEEeecCccccccccc
Q psy15088 946 HVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLK--CFAETP--NKRNKITMIAEPLEKGLAEDIEN 1021 (1291)
Q Consensus 946 ~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~--~~~~s~--nk~~~i~~~~ePl~~~~~~~~~~ 1021 (1291)
++|+|+||||||+|++||+++| ++++++|+|.|+|||||++.+... +...+. .++++++++++|++.+.+..+.+
T Consensus 445 ~ii~g~GelHLei~~~rL~~~~-~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~ 523 (687)
T PRK13351 445 TILSGMGELHLEVALERLRREF-KLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVS 523 (687)
T ss_pred EEEEEecHHHHHHHHHHHHHHh-CCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEee
Confidence 9999999999999999999999 799999999999999999876532 222232 34689999999998753322110
Q ss_pred ceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCC
Q psy15088 1022 QIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101 (1291)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~e 1101 (1291)
|.+| +++| ++++++|.+||+||+++||||+|
T Consensus 524 ------------------------------~~~~-----------~~~~--------~~~~~ai~~g~~~a~~~GpL~~~ 554 (687)
T PRK13351 524 ------------------------------KVVG-----------GAIP--------EELIPAVEKGIREALASGPLAGY 554 (687)
T ss_pred ------------------------------cccC-----------CcCC--------HHHHHHHHHHHHHHHhcCCCCCC
Confidence 1222 2333 36778999999999999999999
Q ss_pred CceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccc
Q psy15088 1102 PIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAP 1181 (1291)
Q Consensus 1102 pv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~ 1181 (1291)
||+||+|+|.|+.+|+++. +.+|+.+++++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|+++++
T Consensus 555 pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~ 632 (687)
T PRK13351 555 PVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEP 632 (687)
T ss_pred ceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceec
Confidence 9999999999999997664 36899999999999999999999999999999999999999999999999999998877
Q ss_pred cCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcC
Q psy15088 1182 VPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 1232 (1291)
Q Consensus 1182 ~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~ 1232 (1291)
..++ .+.|+|++|++|+|||+++||+.|+|+|+|++.|+||+++++++++
T Consensus 633 ~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~ 682 (687)
T PRK13351 633 RGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQK 682 (687)
T ss_pred CCCc-EEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHH
Confidence 5553 3459999999999999999999999999999999999999987654
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.4e-87 Score=852.67 Aligned_cols=654 Identities=24% Similarity=0.341 Sum_probs=516.2
Q ss_pred EcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccccc-
Q psy15088 406 VGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTL- 484 (1291)
Q Consensus 406 iG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~- 484 (1291)
+||+|||||||+++|++.+|.+...+..+.+.+++|++..|++||+|+++...++.| +++.+++||||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-----~~~~i~liDtPG~~~~~~ 75 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-----KGHKINLIDTPGHVDFTG 75 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-----CCEEEEEEECCCcHHHHH
Confidence 599999999999999999998887776777889999999999999999999999999 79999999999997542
Q ss_pred -ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCCcChhh
Q psy15088 485 -LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEE 563 (1291)
Q Consensus 485 -~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l~~~~ 563 (1291)
+..++..+|++++|+|+..+...++..++..+...++|.++ ++| | +|....+.+..+.++.+.++..
T Consensus 76 ~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~ii--v~N----K-~D~~~~~~~~~~~~l~~~l~~~----- 143 (668)
T PRK12740 76 EVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRII--FVN----K-MDRAGADFFRVLAQLQEKLGAP----- 143 (668)
T ss_pred HHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEE--EEE----C-CCCCCCCHHHHHHHHHHHHCCC-----
Confidence 45566678999999999999999999999998888988876 777 5 5654333333333333333221
Q ss_pred hhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCcc-chHHHHHHHHHH
Q psy15088 564 SKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNL-DGWNKEMADKVE 642 (1291)
Q Consensus 564 ~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa-~~~~~~l~e~~~ 642 (1291)
. -..++|+..+..| .+++|++.++.+.| - +|.+...... ..+.....+...
T Consensus 144 ------~--------~~~~~p~~~~~~~----------~~~id~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (668)
T PRK12740 144 ------V--------VPLQLPIGEGDDF----------TGVVDLLSMKAYRY---D-EGGPSEEIEIPAELLDRAEEARE 195 (668)
T ss_pred ------c--------eeEEecccCCCCc----------eEEEECccceEEEe---c-CCCeeEEecCCHHHHHHHHHHHH
Confidence 0 0235777665544 46788887754322 1 2221111000 111111111111
Q ss_pred HHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhchhHHHHHHHHhhCC
Q psy15088 643 LLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIP 720 (1291)
Q Consensus 643 l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lP 720 (1291)
.+.....+. ++.+++++++.. +.+.+.++..+ ....+...||+++|+.+| .|++.|||+|++++|
T Consensus 196 ~l~e~~~~~-d~~~le~~l~~~-------~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~-----~Gv~~LLd~i~~~lP 262 (668)
T PRK12740 196 ELLEALAEF-DDELMEKYLEGE-------ELSEEEIKAGLRKATLAGEIVPVFCGSALKN-----KGVQRLLDAVVDYLP 262 (668)
T ss_pred HHHHHHHhc-CHHHHHHHHCCC-------CCCHHHHHHHHHHHHHcCCEEEEEeccccCC-----ccHHHHHHHHHHHCC
Confidence 112222233 457788888642 45667776655 335689999999999999 999999999999999
Q ss_pred CCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEEEEee
Q psy15088 721 SPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKM 800 (1291)
Q Consensus 721 sP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~ 800 (1291)
+|.++++. .+.. ........||+++|++++|||+
T Consensus 263 sp~~~~~~------~~~~----------------------------------------~~~~~~~~~~~~~~l~a~v~k~ 296 (668)
T PRK12740 263 SPLEVPPV------DGED----------------------------------------GEEGAELAPDPDGPLVALVFKT 296 (668)
T ss_pred Chhhcccc------cCCC----------------------------------------CccccccccCCCCCeEEEEEEe
Confidence 99875431 1110 0012345789999999999999
Q ss_pred ccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccc
Q psy15088 801 YPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVK 880 (1291)
Q Consensus 801 ~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k 880 (1291)
+++++.| +++|+|||||+|++||+|++.++ ...++|++|+.++|++.+++++|+||||+++.|++. +.+
T Consensus 297 ~~~~~~G-~i~~~RV~sG~L~~g~~v~~~~~---------~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~-~~~ 365 (668)
T PRK12740 297 MDDPFVG-KLSLVRVYSGTLKKGDTLYNSGT---------GKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKD-AAT 365 (668)
T ss_pred eecCCCC-cEEEEEEeeeEEcCCCEEEeCCC---------CCcEEecceeeecCCCccccCccCCCCEEEEeccCc-cCC
Confidence 9998765 59999999999999999998763 245789999999999999999999999999999986 446
Q ss_pred cceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCcEEEEecchhHHHHH
Q psy15088 881 TSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCV 959 (1291)
Q Consensus 881 ~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe~ii~g~GELHLEi~ 959 (1291)
++|+++.. .+.+++++.++ +|+++++|+|.+++|.++|.+||++|+++||+++|.. ++|||++|+|+||||||+|
T Consensus 366 Gdtl~~~~---~~~~~~~~~~~-~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~ 441 (668)
T PRK12740 366 GDTLCDKG---DPILLEPMEFP-EPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVA 441 (668)
T ss_pred CCEEeCCC---CccccCCCCCC-CcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHH
Confidence 88997642 34567778775 8999999999999999999999999999999999997 6899999999999999999
Q ss_pred HHHHHhhhcceeEEEcCceEEEEEeeeeccccee--eeecC--CcceEEEEEEeecCcccccccccceeccccchhHHHH
Q psy15088 960 MHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC--FAETP--NKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGE 1035 (1291)
Q Consensus 960 l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~--~~~s~--nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1291)
++||+++| ++++.+|+|+|+|||||.+++.... ...++ ..+++++++++|++.+.+..+++
T Consensus 442 ~~~L~~~~-~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~-------------- 506 (668)
T PRK12740 442 LERLKREY-GVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVD-------------- 506 (668)
T ss_pred HHHHHHHh-CceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEee--------------
Confidence 99999999 7999999999999999998765322 22222 24579999999998753322111
Q ss_pred HHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeee
Q psy15088 1036 FFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVI 1115 (1291)
Q Consensus 1036 ~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~ 1115 (1291)
. +.++.+| ++++++|.+||+||+++||||||||+||+|+|+|+.+
T Consensus 507 ---------------------~------~~~~~~~--------~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~ 551 (668)
T PRK12740 507 ---------------------K------VVGGAVP--------RQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSY 551 (668)
T ss_pred ---------------------c------ccCCCcc--------HHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccc
Confidence 0 1112333 3566899999999999999999999999999999999
Q ss_pred ecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecc
Q psy15088 1116 ATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIP 1195 (1291)
Q Consensus 1116 ~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lP 1195 (1291)
|+.. .+.+++.+++++||++|+++|+|+||||||.|+|+||++++|.|+++|++|||+|+++++.+++ +.|+|++|
T Consensus 552 ~~~~--s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P 627 (668)
T PRK12740 552 HSVD--SSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG--DVVRAEVP 627 (668)
T ss_pred ccCC--CCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCC--EEEEEEcC
Confidence 8643 2456788999999999999999999999999999999999999999999999999988876543 99999999
Q ss_pred cccccCchHHHhhccccceEeeecccceeecCCCCcC
Q psy15088 1196 AIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 1232 (1291)
Q Consensus 1196 v~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~ 1232 (1291)
++|+|||+++||+.|+|+|++++.|+||+++++++++
T Consensus 628 ~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~ 664 (668)
T PRK12740 628 LAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNVAE 664 (668)
T ss_pred HHHhhchHHHHHHhcCCeEEEEEEecccccCCHHHHH
Confidence 9999999999999999999999999999999977653
No 15
>KOG0464|consensus
Probab=100.00 E-value=5.8e-83 Score=696.32 Aligned_cols=665 Identities=21% Similarity=0.299 Sum_probs=519.4
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
+.++|||+|++|+|+||||.++++++..|.+.+.+.+++|++++|++..||||||||+|+.+.|.| ++|++|+||
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-----kg~rinlid 108 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-----KGHRINLID 108 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-----ccceEeeec
Confidence 357899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccccc-----ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHH
Q psy15088 477 TPASPVTL-----LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAV 551 (1291)
Q Consensus 477 TpGh~~~~-----~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i 551 (1291)
||||.+|+ .++++ |++|.|+|++.|+++||.++|+++.+.++|+.+ ||| | ||...++++..++.+
T Consensus 109 tpghvdf~leverclrvl---dgavav~dasagve~qtltvwrqadk~~ip~~~--fin----k-mdk~~anfe~avdsi 178 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVL---DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHC--FIN----K-MDKLAANFENAVDSI 178 (753)
T ss_pred CCCcceEEEEHHHHHHHh---cCeEEEEeccCCcccceeeeehhccccCCchhh--hhh----h-hhhhhhhhhhHHHHH
Confidence 99997654 77777 578899999999999999999999999999998 997 6 898889999889999
Q ss_pred HHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecC-----CCCc
Q psy15088 552 LDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDG-----FPRN 626 (1291)
Q Consensus 552 ~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDG-----fPr~ 626 (1291)
..+||+ +++ ..|+|+++.-.|. -|+.|++..+.+.|+--.-|| -|--
T Consensus 179 ~ekl~a-----------k~l--------~l~lpi~eak~fn---------kg~ldil~ke~l~~ncnsndgkd~e~~pll 230 (753)
T KOG0464|consen 179 EEKLGA-----------KAL--------KLQLPIGEAKGFN---------KGFLDILHKEKLLGNCNSNDGKDFENKPLL 230 (753)
T ss_pred HHHhCC-----------ceE--------EEEeccccccccc---------chHHHHHHHhhccCCCCCCccccccCCccc
Confidence 888876 333 2478888776552 366777766555432111122 2211
Q ss_pred cCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCC-CCHHHHHHHH--hhccccccceEEeecchhhhh
Q psy15088 627 QNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRAD-DNEESLKKRI--SVYNTETMPIIKFFEAKNLVK 703 (1291)
Q Consensus 627 ~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~d-d~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~ 703 (1291)
...--++.+.+.++...+.....|.+++ ..+.++..-. +-+| ...+.++..+ -+..+...||+|||+.+|
T Consensus 231 e~ndpel~e~~ae~knal~~qlad~~~d-fad~~ldef~---~n~d~i~a~elksai~~lt~aq~a~~i~cgsaikn--- 303 (753)
T KOG0464|consen 231 EKNDPELAEELAEAKNALCEQLADLDAD-FADKFLDEFD---ENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKN--- 303 (753)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHhh---ccccccCHHHHHHHHHHHhhhhhhcceehhhhhcc---
Confidence 1122233344444444444444444443 2222222111 1112 3456677766 335678899999999999
Q ss_pred hhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhh
Q psy15088 704 RFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARD 783 (1291)
Q Consensus 704 ~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1291)
.|+|+|||++.-|+|||.++. |..-+||+.+
T Consensus 304 --kgiqplldavtmylpspeern-yeflqwykdd---------------------------------------------- 334 (753)
T KOG0464|consen 304 --KGIQPLLDAVTMYLPSPEERN-YEFLQWYKDD---------------------------------------------- 334 (753)
T ss_pred --cCccchhhhhhhccCChhhcc-hHHHhhhhhh----------------------------------------------
Confidence 899999999999999999875 5566677632
Q ss_pred hhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeecee
Q psy15088 784 MKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRV 863 (1291)
Q Consensus 784 ~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a 863 (1291)
+.+..||+.+++..| .++|.|||||+++..-.+++++. +-.+.+.+++++.+++...|+++
T Consensus 335 ---------lcalafkvlhdkqrg-~l~fmriysgsi~~~~ai~nin~---------~~se~~~kl~~pfade~~~i~ql 395 (753)
T KOG0464|consen 335 ---------LCALAFKVLHDKQRG-PLSFMRIYSGSIHNNLAIFNING---------MCSEGILKLFLPFADEHREIEQL 395 (753)
T ss_pred ---------HHHHhhhhhcccccC-ceeEEEEecccccCceeeeeccc---------ccccchHhhhccchhhhhhhhhc
Confidence 355678999998865 49999999999999999998763 34678899999999999999999
Q ss_pred eCCCeEEEccCCCcccccceeeccccC---------------------CccccccCCCCCCCceEEEEEEeCCCCChhHH
Q psy15088 864 PAGNWVLIEGIDQPIVKTSTITDLITN---------------------EDMYIFRPLKFNTQSVIKIAVEPVNPSELPKM 922 (1291)
Q Consensus 864 ~aGnIv~I~Gl~~~~~k~~Tl~~~~~~---------------------~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL 922 (1291)
+||||....||+.+.+ ++|+.+++.. .....|..+..+ .|||++.|||.+.+.++.+
T Consensus 396 sagnialt~glk~tat-gdtivaskasa~aa~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ 473 (753)
T KOG0464|consen 396 SAGNIALTAGLKHTAT-GDTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDF 473 (753)
T ss_pred ccccEEEEecceeecc-CCeEEecchhHHHHHHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhH
Confidence 9999999999998765 6788765321 122445667764 9999999999999999999
Q ss_pred HHHHHHHHHhCCceeEEE-CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceee---eecC
Q psy15088 923 LDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF---AETP 998 (1291)
Q Consensus 923 ~~~L~~L~~~DPsl~v~~-~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~---~~s~ 998 (1291)
..||+.|.++|||++++. .+|||+|+.||||||+|++.+||+++| |+++-+++.+|.|||++.+....... .-+.
T Consensus 474 ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikrey-~ldtfig~lqvayre~i~~~lr~t~~ld~~lgd 552 (753)
T KOG0464|consen 474 EHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREY-GLDTFIGKLQVAYREMILEELRATAKLDDGLGD 552 (753)
T ss_pred HHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHhhc-CchheehhHHHHHHHHHHHHhhhhhhhhccccc
Confidence 999999999999999997 799999999999999999999999999 89999999999999999876432111 0111
Q ss_pred Ccc-eEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhh
Q psy15088 999 NKR-NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGL 1077 (1291)
Q Consensus 999 nk~-~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~ 1077 (1291)
.|| .-+.+.++|.+....--+. ++. |. .|... ....
T Consensus 553 kk~~~~velear~~~tqa~ip~k--kie---------------fe------------~~es~--------------n~~~ 589 (753)
T KOG0464|consen 553 KKHLEFVELEARLEETQAHIPFK--KIE---------------FE------------LAESA--------------NEGL 589 (753)
T ss_pred cccceEEEEEeeeccccccccce--eEE---------------ee------------ccccc--------------cchh
Confidence 222 2344455554432111110 000 00 01100 0112
Q ss_pred hhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEe
Q psy15088 1078 LGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQA 1157 (1291)
Q Consensus 1078 ~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~ 1157 (1291)
+.--+++|..|+..||..|||.|+|++.|+++++.+.+|...++ +..+..++.+|+.+|+.++.-.|+||.|.++|.+
T Consensus 590 l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n--~alisac~qkcvqealkkad~~l~eplm~lei~i 667 (753)
T KOG0464|consen 590 LDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKIN--PALISACAQKCVQEALKKADKQLLEPLMELEIEI 667 (753)
T ss_pred hhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCC--HHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEE
Confidence 33336789999999999999999999999999999999854322 2345556778888999999999999999999998
Q ss_pred cc-cchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1158 PA-DCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1158 p~-~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
-. +++..|+.+|.+|||++.+.+..+.+....|-|.+|++|..||+..||.+|||.|.|.++|++|+-|.
T Consensus 668 ~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn 738 (753)
T KOG0464|consen 668 ANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMN 738 (753)
T ss_pred ecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcC
Confidence 66 89999999999999999887777777777899999999999999999999999999999999999886
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=4.2e-62 Score=600.30 Aligned_cols=459 Identities=23% Similarity=0.312 Sum_probs=373.2
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
||||||+||+|||||||+++|++.++.+....... .++||+.++|++||+||.+...++.| +++.||||||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~--~~~~D~~~~ErerGiTI~~~~~~v~~-----~~~kinlIDTPG 73 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVA--ERVMDSNDLERERGITILAKNTAIRY-----NGTKINIVDTPG 73 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccce--eecccCchHHHhCCccEEeeeEEEEE-----CCEEEEEEECCC
Confidence 69999999999999999999999988765544332 46999999999999999999999999 799999999999
Q ss_pred ccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCC
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGI 557 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~ 557 (1291)
|.+|. ..+++..+|++++|+|+..|..+||+.++..+...++|.++ ++| | +|...+++++.+.++.+.+.
T Consensus 74 h~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IV--viN----K-iD~~~a~~~~v~~ei~~l~~- 145 (594)
T TIGR01394 74 HADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIV--VIN----K-IDRPSARPDEVVDEVFDLFA- 145 (594)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEE--EEE----C-CCCCCcCHHHHHHHHHHHHH-
Confidence 98765 45566678999999999999999999999999999999875 787 5 55432222211222111110
Q ss_pred CcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHH
Q psy15088 558 HMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEM 637 (1291)
Q Consensus 558 ~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l 637 (1291)
.+ ++
T Consensus 146 ----------------~~-----------------------------------------g~------------------- 149 (594)
T TIGR01394 146 ----------------EL-----------------------------------------GA------------------- 149 (594)
T ss_pred ----------------hh-----------------------------------------cc-------------------
Confidence 00 00
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhh-----hhchhHHHH
Q psy15088 638 ADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVK-----RFNAEKSLV 712 (1291)
Q Consensus 638 ~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~-----~~~g~~~LL 712 (1291)
++ .....|+++.|+..+.-. .-.++..|+
T Consensus 150 ----------------------------------~~------------e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Ll 183 (594)
T TIGR01394 150 ----------------------------------DD------------EQLDFPIVYASGRAGWASLDLDDPSDNMAPLF 183 (594)
T ss_pred ----------------------------------cc------------ccccCcEEechhhcCcccccCcccccCHHHHH
Confidence 00 001235555555554100 013688999
Q ss_pred HHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCC
Q psy15088 713 EMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGR 792 (1291)
Q Consensus 713 D~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 792 (1291)
+.+++++|+|.. ++++|
T Consensus 184 d~Iv~~lP~P~~---------------------------------------------------------------~~~~p 200 (594)
T TIGR01394 184 DAIVRHVPAPKG---------------------------------------------------------------DLDEP 200 (594)
T ss_pred HHHHHhCCCCCC---------------------------------------------------------------CCCCC
Confidence 999999999842 13468
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
+.++|++++.+++.|+ ++++||+||+|++||.|++.+.+ ......+|++|+.+.|.+..++++|.|||||++.
T Consensus 201 l~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~------~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~ 273 (594)
T TIGR01394 201 LQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD------GTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA 273 (594)
T ss_pred EEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC------CceeEEEEEEEEEccCCCceECCEECCCCEEEEe
Confidence 9999999999999876 99999999999999999987632 1123578999999999999999999999999999
Q ss_pred cCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCC---CChhH------HHHHHHHHHHhCCceeEEE-Cc
Q psy15088 873 GIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNP---SELPK------MLDGLRKVNKSYPLLTTKV-EE 942 (1291)
Q Consensus 873 Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~---~d~~k------L~~~L~~L~~~DPsl~v~~-~e 942 (1291)
|+++... ++|+++.. ...+++++.++ +|+++++++|.+. .+..+ |.++|.++..+||+|++.. ++
T Consensus 274 gl~~i~~-Gdtl~~~~---~~~~l~~~~~~-~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~ 348 (594)
T TIGR01394 274 GLEDINI-GETIADPE---VPEALPTITVD-EPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTES 348 (594)
T ss_pred CCcccCC-CCEEeCCC---ccccCCCCCCC-CCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecC
Confidence 9987543 78888753 34566677774 8999999999744 33333 9999999999999999986 78
Q ss_pred CCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccc
Q psy15088 943 SGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQ 1022 (1291)
Q Consensus 943 tGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~ 1022 (1291)
+++++|+|+|||||++++++|+++ |+++.+|+|.|+||| +.
T Consensus 349 ~~~~~v~g~GelHL~il~e~lrre--g~e~~~~~P~V~yre-i~------------------------------------ 389 (594)
T TIGR01394 349 ADKFEVSGRGELHLSILIETMRRE--GFELQVGRPQVIYKE-ID------------------------------------ 389 (594)
T ss_pred CCeEEEEEECHHHHHHHHHHHhcc--CceEEEeCCEEEEEe-CC------------------------------------
Confidence 999999999999999999999998 799999999999998 31
Q ss_pred eeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCC
Q psy15088 1023 IVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEP 1102 (1291)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~ep 1102 (1291)
|
T Consensus 390 -------------------------------------------------------------------------g------ 390 (594)
T TIGR01394 390 -------------------------------------------------------------------------G------ 390 (594)
T ss_pred -------------------------------------------------------------------------C------
Confidence 0
Q ss_pred ceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecccc
Q psy15088 1103 IRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPV 1182 (1291)
Q Consensus 1103 v~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~ 1182 (1291)
.|||||+.++|.||++++|.|+++|++|||+++++++.
T Consensus 391 ------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~ 428 (594)
T TIGR01394 391 ------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPS 428 (594)
T ss_pred ------------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEEC
Confidence 35799999999999999999999999999999988764
Q ss_pred CCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCc
Q psy15088 1183 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPL 1231 (1291)
Q Consensus 1183 ~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~ 1231 (1291)
. .++..|+|.+|+++++||.++||+.|+|+|+|.+.|+||++++++..
T Consensus 429 ~-~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~ 476 (594)
T TIGR01394 429 G-NGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIE 476 (594)
T ss_pred C-CCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCC
Confidence 3 35789999999999999999999999999999999999999997644
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.9e-61 Score=596.92 Aligned_cols=501 Identities=21% Similarity=0.279 Sum_probs=392.2
Q ss_pred cCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEE
Q psy15088 394 MDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMN 473 (1291)
Q Consensus 394 ~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~ 473 (1291)
|..+++||||+|+||+|||||||+++|++.++.+... ..+.+++|++++|++||+|+++..+++.|...+++++.++
T Consensus 1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~---~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ln 77 (600)
T PRK05433 1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSER---EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILN 77 (600)
T ss_pred CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc---ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEE
Confidence 3456789999999999999999999999998876543 2367899999999999999999999999854456689999
Q ss_pred EEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHH
Q psy15088 474 IFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAV 551 (1291)
Q Consensus 474 liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i 551 (1291)
|+|||||.++. ..+.+..+|++|+|+|+..|++.||...+..+...++|.++ ++| | +|....+ ...+
T Consensus 78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIv--ViN----K-iDl~~a~----~~~v 146 (600)
T PRK05433 78 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIP--VLN----K-IDLPAAD----PERV 146 (600)
T ss_pred EEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE--EEE----C-CCCCccc----HHHH
Confidence 99999998664 33445577899999999999999999988888778888665 666 5 3421110 1111
Q ss_pred HHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccc
Q psy15088 552 LDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLD 631 (1291)
Q Consensus 552 ~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~ 631 (1291)
...+ .+ .
T Consensus 147 ~~ei--------------------~~----------------------------------------~------------- 153 (600)
T PRK05433 147 KQEI--------------------ED----------------------------------------V------------- 153 (600)
T ss_pred HHHH--------------------HH----------------------------------------H-------------
Confidence 1000 00 0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHH
Q psy15088 632 GWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 632 ~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~L 711 (1291)
+.+ ...++++.|+..+ .|+..|
T Consensus 154 -----------------lg~------------------------------------~~~~vi~iSAktG-----~GI~~L 175 (600)
T PRK05433 154 -----------------IGI------------------------------------DASDAVLVSAKTG-----IGIEEV 175 (600)
T ss_pred -----------------hCC------------------------------------CcceEEEEecCCC-----CCHHHH
Confidence 000 0013677888888 899999
Q ss_pred HHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCC
Q psy15088 712 VEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEG 791 (1291)
Q Consensus 712 LD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 791 (1291)
++.+++.+|+|.. ++++
T Consensus 176 l~~I~~~lp~P~~---------------------------------------------------------------~~~~ 192 (600)
T PRK05433 176 LEAIVERIPPPKG---------------------------------------------------------------DPDA 192 (600)
T ss_pred HHHHHHhCccccC---------------------------------------------------------------CCCC
Confidence 9999999998852 1246
Q ss_pred CeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEE
Q psy15088 792 RLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI 871 (1291)
Q Consensus 792 pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I 871 (1291)
|+.++|+|.+.+++.|. ++++||++|+|++||+|++.+. +..++|++++.+.+ +..+++++.||||+.+
T Consensus 193 pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~~---------~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i 261 (600)
T PRK05433 193 PLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMST---------GKEYEVDEVGVFTP-KMVPVDELSAGEVGYI 261 (600)
T ss_pred CceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEecC---------CceEEEEEeeccCC-CceECcEEcCCCEEEE
Confidence 89999999999988775 9999999999999999998763 35688999986655 8899999999999887
Q ss_pred c-cCCC--cccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEE
Q psy15088 872 E-GIDQ--PIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVV 948 (1291)
Q Consensus 872 ~-Gl~~--~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii 948 (1291)
. |+++ .+..++|+++... +...+++++.+ ++|+++++|+|.+.+|.++|.+||.+|+.+||+|.+. .+|++.++
T Consensus 262 ~~~ik~~~~~~~Gdtl~~~~~-~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~ 338 (600)
T PRK05433 262 IAGIKDVRDARVGDTITLAKN-PAEEPLPGFKE-VKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALG 338 (600)
T ss_pred ecccccccccCCCCEEECCCC-ccccCCCCCCC-CCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCccee
Confidence 5 5532 1223678876532 21245666666 4899999999999999999999999999999999987 88999999
Q ss_pred Ee-----cchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccce
Q psy15088 949 LG-----TGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQI 1023 (1291)
Q Consensus 949 ~g-----~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~ 1023 (1291)
.| +|+||||++++||+++| |+++.+++|.|+||||+++... +. +++
T Consensus 339 ~g~r~gf~G~lHlev~~erL~~e~-~~~v~~~~P~V~Yreti~~g~~---------------~~-----------~~~-- 389 (600)
T PRK05433 339 FGFRCGFLGLLHMEIIQERLEREF-DLDLITTAPSVVYEVTLTDGEV---------------IE-----------VDN-- 389 (600)
T ss_pred cceEeecHHHHHHHHHHHHHHHhh-CceEEEecCEEEEEEEEeCCcE---------------EE-----------EEC--
Confidence 99 99999999999999999 8999999999999999875100 00 000
Q ss_pred eccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCc
Q psy15088 1024 VHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPI 1103 (1291)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv 1103 (1291)
|. ++|
T Consensus 390 ----------------------------------------------p~----------------------------~~p- 394 (600)
T PRK05433 390 ----------------------------------------------PS----------------------------KLP- 394 (600)
T ss_pred ----------------------------------------------cc----------------------------cCC-
Confidence 00 001
Q ss_pred eeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccC
Q psy15088 1104 RNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVP 1183 (1291)
Q Consensus 1104 ~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~ 1183 (1291)
++..+ ..|+||||.++|.+|++|+|.|+++|++|||++++.++..
T Consensus 395 ------------ds~~~-----------------------~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~ 439 (600)
T PRK05433 395 ------------DPGKI-----------------------EEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG 439 (600)
T ss_pred ------------Ccccc-----------------------ceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC
Confidence 00000 1799999999999999999999999999999999887753
Q ss_pred CCCcEEEEEecccccc-cCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCC-------CCcccHHHHHHHH
Q psy15088 1184 GSPLYTIKAFIPAIDS-FGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEP-------QPATHLAREFMIK 1255 (1291)
Q Consensus 1184 gt~~~~I~a~lPv~es-fgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~-------~~~~~~a~~~~~~ 1255 (1291)
+...|+|.+|++|+ ++|.++|||.|+|+|+|.+.|+||++..--.++..++-++.+. ..+.+.+|+++.+
T Consensus 440 --~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (600)
T PRK05433 440 --NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEK 517 (600)
T ss_pred --CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccccEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHH
Confidence 47899999999999 9999999999999999999999999876544444444444443 3466788888887
Q ss_pred Hh
Q psy15088 1256 TR 1257 (1291)
Q Consensus 1256 iR 1257 (1291)
++
T Consensus 518 l~ 519 (600)
T PRK05433 518 LK 519 (600)
T ss_pred HH
Confidence 65
No 18
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=7.4e-61 Score=587.64 Aligned_cols=460 Identities=22% Similarity=0.308 Sum_probs=376.2
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
+++||||||+||+|||||||+++|++..+.+..... ...++||+.++|++||+|+.+..+++.| +++.++++|
T Consensus 2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~--~~~~v~D~~~~E~erGiTi~~~~~~i~~-----~~~~inliD 74 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE--TQERVMDSNDLEKERGITILAKNTAIKW-----NDYRINIVD 74 (607)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc--cceeeeccccccccCceEEEEEEEEEec-----CCEEEEEEE
Confidence 357999999999999999999999998876654332 2348999999999999999999999999 799999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHH
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ 554 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~ 554 (1291)
||||.++. ....+..+|++|+|+|+..|+..||+.++..+...++|.++ ++| | +|...++++..+.++.+.
T Consensus 75 TPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IV--viN----K-iD~~~a~~~~vl~ei~~l 147 (607)
T PRK10218 75 TPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV--VIN----K-VDRPGARPDWVVDQVFDL 147 (607)
T ss_pred CCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEE--EEE----C-cCCCCCchhHHHHHHHHH
Confidence 99998765 34456778999999999999999999999999999999876 787 5 565443333333333221
Q ss_pred hCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHH
Q psy15088 555 LGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWN 634 (1291)
Q Consensus 555 lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~ 634 (1291)
+.. + ++.
T Consensus 148 ~~~-l---------------------------------------------------------~~~--------------- 154 (607)
T PRK10218 148 FVN-L---------------------------------------------------------DAT--------------- 154 (607)
T ss_pred Hhc-c---------------------------------------------------------Ccc---------------
Confidence 100 0 000
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhh-hh----hchhH
Q psy15088 635 KEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLV-KR----FNAEK 709 (1291)
Q Consensus 635 ~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~-~~----~~g~~ 709 (1291)
....-.||+++|+..+.- .. -.|+.
T Consensus 155 --------------------------------------------------~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~ 184 (607)
T PRK10218 155 --------------------------------------------------DEQLDFPIVYASALNGIAGLDHEDMAEDMT 184 (607)
T ss_pred --------------------------------------------------ccccCCCEEEeEhhcCcccCCccccccchH
Confidence 000125777777776620 00 12678
Q ss_pred HHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCC
Q psy15088 710 SLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNP 789 (1291)
Q Consensus 710 ~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 789 (1291)
.|+|+|++++|+|.. ++
T Consensus 185 ~Lld~Ii~~iP~P~~---------------------------------------------------------------~~ 201 (607)
T PRK10218 185 PLYQAIVDHVPAPDV---------------------------------------------------------------DL 201 (607)
T ss_pred HHHHHHHHhCCCCCC---------------------------------------------------------------CC
Confidence 999999999999941 23
Q ss_pred CCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeE
Q psy15088 790 EGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWV 869 (1291)
Q Consensus 790 ~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv 869 (1291)
++|+.++|+|++.+++.|+ ++++|||||+|++||.|++.+.+ .....++|++||.+.|.+..++++|.|||||
T Consensus 202 ~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~~------~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIv 274 (607)
T PRK10218 202 DGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDSE------GKTRNAKVGKVLGHLGLERIETDLAEAGDIV 274 (607)
T ss_pred CCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecCC------CcEeeEEEEEEEEEecCCceECCEEcCCCEE
Confidence 4689999999999988776 99999999999999999986531 0123588999999999999999999999999
Q ss_pred EEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCC---CCChhHHHH---HHHHHHH---hCCceeEEE
Q psy15088 870 LIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVN---PSELPKMLD---GLRKVNK---SYPLLTTKV 940 (1291)
Q Consensus 870 ~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~---~~d~~kL~~---~L~~L~~---~DPsl~v~~ 940 (1291)
++.|+++..+ ++|+++.. ...++.++.++ +|++++++.|.+ ..|..|+.. +|.+|.+ +||+|++..
T Consensus 275 ai~gl~~~~~-GdTl~~~~---~~~~l~~~~~~-~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~ 349 (607)
T PRK10218 275 AITGLGELNI-SDTVCDTQ---NVEALPALSVD-EPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEE 349 (607)
T ss_pred EEECcccccc-CcEEecCC---CcccCCCCCCC-CCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEE
Confidence 9999988654 78887652 23456667775 899999999999 778899865 7777777 899999986
Q ss_pred -CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCccccccc
Q psy15088 941 -EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDI 1019 (1291)
Q Consensus 941 -~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~ 1019 (1291)
+++++++|+|+||||||+++++|+++ |+++.+|+|.|+|||| +
T Consensus 350 ~~~~~~~~v~g~GelHL~il~e~lrre--g~e~~~~~P~V~yret--~-------------------------------- 393 (607)
T PRK10218 350 TEDADAFRVSGRGELHLSVLIENMRRE--GFELAVSRPKVIFREI--D-------------------------------- 393 (607)
T ss_pred cCCCCeEEEEEEcHHHHHHHHHHHHhC--CceEEEeCCEEEEEEE--C--------------------------------
Confidence 78999999999999999999999999 7999999999999997 0
Q ss_pred ccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccC
Q psy15088 1020 ENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLC 1099 (1291)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~ 1099 (1291)
+ +
T Consensus 394 --g------------------------------------------------~---------------------------- 395 (607)
T PRK10218 394 --G------------------------------------------------R---------------------------- 395 (607)
T ss_pred --C------------------------------------------------E----------------------------
Confidence 0 0
Q ss_pred CCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeec
Q psy15088 1100 EEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQD 1179 (1291)
Q Consensus 1100 ~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~ 1179 (1291)
.+|||+.++|.||++++|.|+++|++|||+++++
T Consensus 396 ----------------------------------------------klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m 429 (607)
T PRK10218 396 ----------------------------------------------KQEPYENVTLDVEEQHQGSVMQALGERKGDLKNM 429 (607)
T ss_pred ----------------------------------------------EeCCeEEEEEEechhhHHHHHHHHHhcCCEEecc
Confidence 0489999999999999999999999999999988
Q ss_pred cccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC-CC
Q psy15088 1180 APVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP-GD 1229 (1291)
Q Consensus 1180 ~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~-~d 1229 (1291)
++. +.++..|+|.+|.++++||.++||+.|+|+|.|.+.|+||++++ |+
T Consensus 430 ~~~-~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~ 479 (607)
T PRK10218 430 NPD-GKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGE 479 (607)
T ss_pred EEC-CCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCC
Confidence 764 33678999999999999999999999999999999999999999 54
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.6e-60 Score=588.33 Aligned_cols=496 Identities=19% Similarity=0.267 Sum_probs=388.3
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+||||+|+||+|||||||+++|++.++.+... ..+.+++|+.++|++||+|+++..+++.|....++.+.++|+|||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP 78 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 78 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999999998876532 246789999999999999999999999885334566899999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhC
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLG 556 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg 556 (1291)
||.++. ....+..+|++|+|+|+..|.+.|+...+..+...++|.++ ++| | +|....+ ...+...
T Consensus 79 G~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIi--ViN----K-iDl~~~~----~~~~~~e-- 145 (595)
T TIGR01393 79 GHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIP--VIN----K-IDLPSAD----PERVKKE-- 145 (595)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEE--EEE----C-cCCCccC----HHHHHHH--
Confidence 998664 34456678999999999999999999888877777887655 666 5 3421100 0011000
Q ss_pred CCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHH
Q psy15088 557 IHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKE 636 (1291)
Q Consensus 557 ~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~ 636 (1291)
+.+
T Consensus 146 ------------------l~~----------------------------------------------------------- 148 (595)
T TIGR01393 146 ------------------IEE----------------------------------------------------------- 148 (595)
T ss_pred ------------------HHH-----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHHH
Q psy15088 637 MADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCV 716 (1291)
Q Consensus 637 l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv 716 (1291)
.+ .....++++.|+..+ .|+..|++.++
T Consensus 149 -----------------------~l------------------------g~~~~~vi~vSAktG-----~GI~~Lle~I~ 176 (595)
T TIGR01393 149 -----------------------VI------------------------GLDASEAILASAKTG-----IGIEEILEAIV 176 (595)
T ss_pred -----------------------Hh------------------------CCCcceEEEeeccCC-----CCHHHHHHHHH
Confidence 00 000013677888888 89999999999
Q ss_pred hhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEE
Q psy15088 717 KHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVH 796 (1291)
Q Consensus 717 ~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~ 796 (1291)
+++|+|.. ++++|+.++
T Consensus 177 ~~lp~p~~---------------------------------------------------------------~~~~pl~~~ 193 (595)
T TIGR01393 177 KRVPPPKG---------------------------------------------------------------DPDAPLKAL 193 (595)
T ss_pred HhCCCCCC---------------------------------------------------------------CCCCCeEEE
Confidence 99999852 134689999
Q ss_pred EEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc-cCC
Q psy15088 797 SSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE-GID 875 (1291)
Q Consensus 797 V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~-Gl~ 875 (1291)
|+|.+.+++.|. ++++||++|+|++||+|++.+. +..++|.+++.+.+.. .+++++.||||+.+. |++
T Consensus 194 V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~~---------~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~ 262 (595)
T TIGR01393 194 IFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMST---------GKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIK 262 (595)
T ss_pred EEEEEEeCCCcE-EEEEEEECCEEecCCEEEEecC---------CCeeEEeEEEEecCCc-eECCEEcCCCEEEEecccc
Confidence 999999998775 9999999999999999998763 3468899999776655 899999999998774 553
Q ss_pred ---CcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEe--
Q psy15088 876 ---QPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLG-- 950 (1291)
Q Consensus 876 ---~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g-- 950 (1291)
+.. .++|+++... +...++.++.++ +|+++++|+|.+.+|.++|.+||.+|+.+||+|.+. .+|++.++.|
T Consensus 263 ~~~~~~-~Gdtl~~~~~-~~~~~l~~~~~~-~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r 338 (595)
T TIGR01393 263 DVSDVR-VGDTITHVKN-PAKEPLPGFKEV-KPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE-PESSPALGFGFR 338 (595)
T ss_pred ccCccC-CCCEEECCCC-ccccCCCCCcCC-CcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE-ecCCcccccccE
Confidence 332 3678876531 112356666764 899999999999999999999999999999999987 5889988885
Q ss_pred ---cchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceeccc
Q psy15088 951 ---TGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIA 1027 (1291)
Q Consensus 951 ---~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~ 1027 (1291)
+|+||||++++||+++| |+++.+++|.|+||||+.+.. .+. ++
T Consensus 339 ~g~lG~lHlei~~erL~re~-~~~v~~~~P~V~Yreti~~g~---------------~~~-----------~~------- 384 (595)
T TIGR01393 339 CGFLGLLHMEIIQERLEREF-NLDLITTAPSVIYRVYLTNGE---------------VIE-----------VD------- 384 (595)
T ss_pred EeeeeHHHHHHHHHHHHHHh-CCeeEEecCEEEEEEEecCCc---------------EEE-----------EE-------
Confidence 99999999999999999 899999999999999986310 000 00
Q ss_pred cchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeE
Q psy15088 1028 WNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVK 1107 (1291)
Q Consensus 1028 ~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~ 1107 (1291)
+ | .++|+.+.
T Consensus 385 ---------------------------------------~-----------------------------p-~~~p~~~~- 394 (595)
T TIGR01393 385 ---------------------------------------N-----------------------------P-SDLPDPGK- 394 (595)
T ss_pred ---------------------------------------C-----------------------------c-ccCCCccc-
Confidence 0 1 13333220
Q ss_pred EEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCc
Q psy15088 1108 FKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPL 1187 (1291)
Q Consensus 1108 ~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~ 1187 (1291)
-|.|+|||+.++|.+|++++|.|+++|++|||++++.+...+ +.
T Consensus 395 -----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~ 438 (595)
T TIGR01393 395 -----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NR 438 (595)
T ss_pred -----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-Ce
Confidence 278999999999999999999999999999999998876533 46
Q ss_pred EEEEEecccccc-cCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCC-------CCcccHHHHHHHHHh
Q psy15088 1188 YTIKAFIPAIDS-FGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEP-------QPATHLAREFMIKTR 1257 (1291)
Q Consensus 1188 ~~I~a~lPv~es-fgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~-------~~~~~~a~~~~~~iR 1257 (1291)
..|+|.+|++|+ ++|.++|||.|+|.|+|.+.|+||++-.--.++.-++-++.+. ..+...+|+++.+++
T Consensus 439 ~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 439 VELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPSDLVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLK 516 (595)
T ss_pred EEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccccceEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 899999999997 9999999999999999999999999866544554444444443 346678888888765
No 20
>KOG0462|consensus
Probab=100.00 E-value=6.5e-55 Score=496.72 Aligned_cols=472 Identities=20% Similarity=0.254 Sum_probs=365.9
Q ss_pred Cc-cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEE
Q psy15088 396 TP-HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNI 474 (1291)
Q Consensus 396 ~~-~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~l 474 (1291)
.| ++|||++|++|+|||||||+++||..+|.+.. .....+++|.+..||||||||++...++.|.+ +.+|.+||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~---~~~q~q~LDkl~vERERGITIkaQtasify~~--~~~ylLNL 129 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDN---NIGQEQVLDKLQVERERGITIKAQTASIFYKD--GQSYLLNL 129 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCC---CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc--CCceEEEe
Confidence 45 89999999999999999999999999986532 23567899999999999999999999999965 67799999
Q ss_pred EeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHH
Q psy15088 475 FDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVL 552 (1291)
Q Consensus 475 iDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~ 552 (1291)
||||||.+|. --+.+..+|++++|+||..|+++||....-.|.+.|+..+- ++| | .|...++.+....++.
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIp--VlN----K-IDlp~adpe~V~~q~~ 202 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIP--VLN----K-IDLPSADPERVENQLF 202 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEE--eee----c-cCCCCCCHHHHHHHHH
Confidence 9999998775 22333445799999999999999999999999999887764 555 4 5655554433222221
Q ss_pred HHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccch
Q psy15088 553 DQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDG 632 (1291)
Q Consensus 553 ~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~ 632 (1291)
.-+ .
T Consensus 203 ~lF---------------------------------------------------------------~------------- 206 (650)
T KOG0462|consen 203 ELF---------------------------------------------------------------D------------- 206 (650)
T ss_pred HHh---------------------------------------------------------------c-------------
Confidence 111 0
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHH
Q psy15088 633 WNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLV 712 (1291)
Q Consensus 633 ~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LL 712 (1291)
-...+++.-|++.| -++..+|
T Consensus 207 ------------------------------------------------------~~~~~~i~vSAK~G-----~~v~~lL 227 (650)
T KOG0462|consen 207 ------------------------------------------------------IPPAEVIYVSAKTG-----LNVEELL 227 (650)
T ss_pred ------------------------------------------------------CCccceEEEEeccC-----ccHHHHH
Confidence 01124666778888 6888899
Q ss_pred HHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCC
Q psy15088 713 EMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGR 792 (1291)
Q Consensus 713 D~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 792 (1291)
++|++.+|.|... .++|
T Consensus 228 ~AII~rVPpP~~~---------------------------------------------------------------~d~p 244 (650)
T KOG0462|consen 228 EAIIRRVPPPKGI---------------------------------------------------------------RDAP 244 (650)
T ss_pred HHHHhhCCCCCCC---------------------------------------------------------------CCcc
Confidence 9999999999631 2468
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
|.+.+|.++.+++.|. ++++||..|.+++||+|..+..+ +....++-.++.+..-...+++...+|.|++..
T Consensus 245 lr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~t~-------~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~m 316 (650)
T KOG0462|consen 245 LRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAATG-------KSYEVKVVGVMRPEMTPVVELDAGQVGYIICNM 316 (650)
T ss_pred hHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEeecC-------cceEeEEeEEeccCceeeeeecccccceeEecc
Confidence 9999999999999876 99999999999999999987643 223444445555555555556666667777766
Q ss_pred c-CCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCC----cEE
Q psy15088 873 G-IDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESG----EHV 947 (1291)
Q Consensus 873 G-l~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etG----e~i 947 (1291)
| ++.... ++|+.........+.++..+- ..|++++..-|.+.+|...|..++.+|+.+|+++.+..+.+| -+.
T Consensus 317 r~~~ea~I-GdTi~~~~~~~~v~tl~~~~~-~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr 394 (650)
T KOG0462|consen 317 RNVKEAQI-GDTIAHKSVTKAVETLPGFEP-TKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWR 394 (650)
T ss_pred cccccccc-cceeeecccCcccCcCCCCCC-CcceEEeccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceE
Confidence 6 666655 788887532122333433333 589999999999999999999999999999999999876555 357
Q ss_pred EEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceeccc
Q psy15088 948 VLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIA 1027 (1291)
Q Consensus 948 i~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~ 1027 (1291)
+.+.|.||||+.++||+++| |.++.+++|.|+||=-..+..+. .+
T Consensus 395 ~gflG~LHm~Vf~erle~Ey-g~elivt~PtV~Yr~~~~~~~~~--------------------------~i-------- 439 (650)
T KOG0462|consen 395 LGFLGLLHMEVFIERLEREY-GAELIVTPPTVPYRVVYSNGDEI--------------------------LI-------- 439 (650)
T ss_pred eeccceeeHHHHHHHHHHhc-CceeeecCCcceEEEEecCCcee--------------------------ee--------
Confidence 88899999999999999999 79999999999999543221000 00
Q ss_pred cchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeE
Q psy15088 1028 WNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVK 1107 (1291)
Q Consensus 1028 ~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~ 1107 (1291)
.+|+. +|...+
T Consensus 440 -------------------------------~np~~-----fp~~~~--------------------------------- 450 (650)
T KOG0462|consen 440 -------------------------------SNPAL-----FPDPSD--------------------------------- 450 (650)
T ss_pred -------------------------------cChhh-----CCCccc---------------------------------
Confidence 01111 111000
Q ss_pred EEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCc
Q psy15088 1108 FKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPL 1187 (1291)
Q Consensus 1108 ~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~ 1187 (1291)
-...+||+...+|.+|++|+|.|+..++.|||...++...+++ .
T Consensus 451 -----------------------------------v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~n-r 494 (650)
T KOG0462|consen 451 -----------------------------------VKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGN-R 494 (650)
T ss_pred -----------------------------------chhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCC-e
Confidence 0135799999999999999999999999999999999888775 8
Q ss_pred EEEEEecccccccC-chHHHhhccccceEeeecccceeecC
Q psy15088 1188 YTIKAFIPAIDSFG-FETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1188 ~~I~a~lPv~esfg-f~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
..++-++|++|+.| |.+.|.|.|+|.|+|..+|++|++-+
T Consensus 495 ~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~sd 535 (650)
T KOG0462|consen 495 VMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQASD 535 (650)
T ss_pred EEEEEecChHHHHHHHHHHHhccccceeEEeeccccccccc
Confidence 89999999999999 99999999999999999999999433
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.4e-54 Score=525.55 Aligned_cols=454 Identities=16% Similarity=0.146 Sum_probs=344.1
Q ss_pred cCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccc----cccccccccccccccCceeeeccceecccccCCCC
Q psy15088 394 MDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE----KNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKN 469 (1291)
Q Consensus 394 ~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~----~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~ 469 (1291)
+...+++|||||+||+|||||||+++|++..+.+...+.++ +..+++|+++.|++||+|+.++.++|.| ++
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-----~~ 78 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-----RD 78 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-----CC
Confidence 34457899999999999999999999999998887666553 2345699999999999999999999999 79
Q ss_pred eEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCc
Q psy15088 470 YLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSS 547 (1291)
Q Consensus 470 ~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~ 547 (1291)
+.+|++|||||.++. ..+++..+|++|+|+|+..|+..|++++++.+...++|+++ |+| | +|+...+..+.
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv--~iN----K-~D~~~a~~~~~ 151 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFT--FIN----K-LDRDGREPLEL 151 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEE--EEE----C-CcccccCHHHH
Confidence 999999999997654 34555677999999999999999999999999999999876 888 6 67665555555
Q ss_pred HHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCcc
Q psy15088 548 LPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQ 627 (1291)
Q Consensus 548 l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~ 627 (1291)
+.++.+.||.... +.|+|++.+..| .+++|++.++.+.+.. -+|-....
T Consensus 152 l~~i~~~l~~~~~-------------------p~~~Pig~~~~f----------~Gvvdl~~~~~~~~~~--~~~~~~~~ 200 (526)
T PRK00741 152 LDEIEEVLGIACA-------------------PITWPIGMGKRF----------KGVYDLYNDEVELYQP--GEGHTIQE 200 (526)
T ss_pred HHHHHHHhCCCCe-------------------eEEeccccCCce----------eEEEEeecceeeeccc--CCCCccee
Confidence 6666666654111 237899888766 4789999886543210 00100000
Q ss_pred CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccC------CCCCCCCCHHHHHHHHhhccccccceEEeecchhh
Q psy15088 628 NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAE------GSGRADDNEESLKKRISVYNTETMPIIKFFEAKNL 701 (1291)
Q Consensus 628 ~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~------~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~ 701 (1291)
.+.+.+ . ++.+++++++.... ..--.+...+..+ -...++.+.||+|||+.+|
T Consensus 201 ------~e~~~~-----------~-dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~--~~~~~~~~~PV~~GSA~~n- 259 (526)
T PRK00741 201 ------VEIIKG-----------L-DNPELDELLGEDLAEQLREELELVQGASNEFDL--EAFLAGELTPVFFGSALNN- 259 (526)
T ss_pred ------eeeccC-----------C-CHHHHHHHhcccHHHHHHHHHHhhhhcccchhH--HHHhcCCeEEEEEeecccC-
Confidence 000000 0 11122222221100 0000000000111 1345678999999999999
Q ss_pred hhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhh
Q psy15088 702 VKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVA 781 (1291)
Q Consensus 702 ~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1291)
.|++.|||++++++|+|.++... .+.
T Consensus 260 ----~Gv~~LLd~i~~~~P~P~~~~~~------~~~-------------------------------------------- 285 (526)
T PRK00741 260 ----FGVQEFLDAFVEWAPAPQPRQTD------ERE-------------------------------------------- 285 (526)
T ss_pred ----cCHHHHHHHHHHHCCCCCccccc------cee--------------------------------------------
Confidence 89999999999999999753210 000
Q ss_pred hhhhccCCCCCeEEEEEeecc---CCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCcee
Q psy15088 782 RDMKACNPEGRLMVHSSKMYP---TEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKV 858 (1291)
Q Consensus 782 ~~~~~~d~~~pl~~~V~K~~~---~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~ 858 (1291)
..+ ...+++++|||+.. +++.|+ ++|+|||||++++|++|++.. .++.+++++++.++|.+.+
T Consensus 286 ---~~~-~~~~~~~~VFK~~~~m~~~~~gr-lafvRV~sG~l~~g~~v~~~~---------~~k~~ri~~~~~~~g~~~~ 351 (526)
T PRK00741 286 ---VEP-TEEKFSGFVFKIQANMDPKHRDR-IAFVRVCSGKFEKGMKVRHVR---------TGKDVRISNALTFMAQDRE 351 (526)
T ss_pred ---ecC-CCCceEEEEEEEEecCCCCcCce-EEEEEEeccEECCCCEEEecc---------CCceEEecceEEEecCCce
Confidence 011 23469999999984 445554 999999999999999999865 3467899999999999999
Q ss_pred eeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeE
Q psy15088 859 EVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTT 938 (1291)
Q Consensus 859 ~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v 938 (1291)
++++|.||||+++.|++++.+ ++|+++.. ...|.++.++ +|+++++|+|+++.|.+||.+||++|++||| +++
T Consensus 352 ~v~~a~aGDIv~v~~l~~~~~-GDTL~~~~----~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~ 424 (526)
T PRK00741 352 HVEEAYAGDIIGLHNHGTIQI-GDTFTQGE----KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQV 424 (526)
T ss_pred ECceeCCCCEEEEECCCCCcc-CCCccCCC----ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEE
Confidence 999999999999999998765 67887642 3456777775 8999999999999999999999999999996 887
Q ss_pred EE-CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeee
Q psy15088 939 KV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVE 987 (1291)
Q Consensus 939 ~~-~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~ 987 (1291)
.. ++|||++|+||||||||++++||+++| |+++.+++|.|++---|..
T Consensus 425 ~~~~~t~e~il~g~G~lhleV~~~RL~~ey-~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 425 FRPLDNNDLILGAVGQLQFEVVAHRLKNEY-NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred EECCCCCCEEEEEEeHHHHHHHHHHHHHHh-CCEEEEecCCccEEEEEeC
Confidence 65 889999999999999999999999999 8999999999999888753
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=4.3e-53 Score=514.61 Aligned_cols=447 Identities=16% Similarity=0.177 Sum_probs=336.7
Q ss_pred hcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccc-c---ccccccccccccccCceeeeccceecccccCCC
Q psy15088 393 MMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE-K---NLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK 468 (1291)
Q Consensus 393 ~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~-~---~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~ 468 (1291)
+++...++|||||+||+|||||||+++|++..+.+...+.++ + ..+++|+++.|++||+|+.++.+.+.| +
T Consensus 4 ~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-----~ 78 (527)
T TIGR00503 4 LLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-----R 78 (527)
T ss_pred hhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-----C
Confidence 455667899999999999999999999999998887666554 2 247899999999999999999999999 7
Q ss_pred CeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccC
Q psy15088 469 NYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDS 546 (1291)
Q Consensus 469 ~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~ 546 (1291)
++.+||+|||||.++. ...++..+|++|+|+|+..|+..|++++++.+...++|.++ |+| | +|+...+.++
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Piiv--viN----K-iD~~~~~~~~ 151 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFT--FMN----K-LDRDIRDPLE 151 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEE--EEE----C-ccccCCCHHH
Confidence 9999999999997654 44556678999999999999999999999998888888876 888 6 6765555555
Q ss_pred cHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCc
Q psy15088 547 SLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRN 626 (1291)
Q Consensus 547 ~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~ 626 (1291)
.+..+...++.. +. ..++|++.+..| .+++|++.+..+.+.. --.|-...
T Consensus 152 ll~~i~~~l~~~-----------~~--------~~~~PIg~~~~f----------~gv~d~l~~~~~~y~~-~~~~~~~~ 201 (527)
T TIGR00503 152 LLDEVENELKIN-----------CA--------PITWPIGCGKLF----------KGVYHLLKDETYLYQS-GTGGTIQA 201 (527)
T ss_pred HHHHHHHHhCCC-----------Cc--------cEEEEecCCCce----------eEEEEcccCcceecCc-cCCCceeE
Confidence 555555555431 11 236888777665 4678888775442200 00000000
Q ss_pred c---Cccc-hH-----HHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeec
Q psy15088 627 Q---NNLD-GW-----NKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFE 697 (1291)
Q Consensus 627 ~---~qa~-~~-----~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa 697 (1291)
. ..+. .. ...+.+.....+++.-+.++ +.+ +-...++.+.||+|||+
T Consensus 202 ~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~------------------~~~------~~~~~~~~~~PV~~GSA 257 (527)
T TIGR00503 202 VRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASN------------------EFD------LAAFHGGEMTPVFFGTA 257 (527)
T ss_pred eehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcc------------------ccC------HHHHhcCCeeEEEEeec
Confidence 0 0000 00 00011000000000000000 001 12334578999999999
Q ss_pred chhhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCC
Q psy15088 698 AKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGD 777 (1291)
Q Consensus 698 ~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1291)
.+| .|++.|||++++++|+|.++... ...
T Consensus 258 ~~n-----~Gv~~LLd~i~~~~PsP~~~~~~------~~~---------------------------------------- 286 (527)
T TIGR00503 258 LGN-----FGVDHFLDGLLQWAPKPEARQSD------TRT---------------------------------------- 286 (527)
T ss_pred ccC-----ccHHHHHHHHHHHCCCCccccCC------cee----------------------------------------
Confidence 999 89999999999999999753210 000
Q ss_pred chhhhhhhccCCCCCeEEEEEeecc--CC-CCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEec
Q psy15088 778 SDVARDMKACNPEGRLMVHSSKMYP--TE-ECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEA 854 (1291)
Q Consensus 778 ~~~~~~~~~~d~~~pl~~~V~K~~~--~~-~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g 854 (1291)
..+ ..+|+.++|||+.. ++ +.|+ ++|+|||||++++|++|++.+ .++.+++++++.++|
T Consensus 287 -------~~~-~~~~~~~~VFK~~~~mdp~~~gr-iaf~RV~sG~l~~g~~v~~~~---------~~k~~ri~~~~~~~g 348 (527)
T TIGR00503 287 -------VEP-TEEKFSGFVFKIQANMDPKHRDR-VAFMRVVSGKYEKGMKLKHVR---------TGKDVVISDALTFMA 348 (527)
T ss_pred -------cCC-CCCCeeEEEEEEEeccCcccCce-EEEEEEeeeEEcCCCEEEecC---------CCCcEEecchhhhhc
Confidence 111 24579999999987 64 5555 899999999999999999865 346789999999999
Q ss_pred CceeeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q psy15088 855 RYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYP 934 (1291)
Q Consensus 855 ~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DP 934 (1291)
.+.+++++|.||||+++.|++++.+ ++|+++. ....+.++.++ .|+++++|+|+++.|.+||.+||++|++|||
T Consensus 349 ~~~~~v~~a~aGDI~~~~~~~~~~~-GDtl~~~----~~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~ 422 (527)
T TIGR00503 349 GDREHVEEAYAGDIIGLHNHGTIQI-GDTFTQG----EKIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA 422 (527)
T ss_pred CCceEcceeCCCCEEEEECCCCccc-CCEecCC----CceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC
Confidence 9999999999999999999988755 6788763 13456677774 8999999999999999999999999999999
Q ss_pred ceeEEE-CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEE
Q psy15088 935 LLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFC 982 (1291)
Q Consensus 935 sl~v~~-~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yr 982 (1291)
+++.. ++|||++|+||||||||++++||+++| |+++.+++|.|+.-
T Consensus 423 -l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey-~v~v~~~~~~v~~~ 469 (527)
T TIGR00503 423 -VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEY-NVEARYEPVNVATA 469 (527)
T ss_pred -eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHh-CCeEEEeCCCceEE
Confidence 78765 789999999999999999999999999 89999999988754
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.3e-52 Score=463.74 Aligned_cols=497 Identities=21% Similarity=0.303 Sum_probs=379.3
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
..++|||++|++|+|||||||+++|+..++.+... +....++|++..||||||||++.++++.|....++.|.+|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence 45789999999999999999999999999876432 345679999999999999999999999997777889999999
Q ss_pred eCCCcccc-----cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHH
Q psy15088 476 DTPASPVT-----LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPA 550 (1291)
Q Consensus 476 DTpGh~~~-----~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~ 550 (1291)
|||||.+| |+|.++ .++++|+||..|+++||..-.-.|.++++..+- .+| | +|-..++++....+
T Consensus 82 DTPGHVDFsYEVSRSLAAC---EGalLvVDAsQGveAQTlAN~YlAle~~LeIiP--ViN----K-IDLP~Adpervk~e 151 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAAC---EGALLVVDASQGVEAQTLANVYLALENNLEIIP--VLN----K-IDLPAADPERVKQE 151 (603)
T ss_pred CCCCccceEEEehhhHhhC---CCcEEEEECccchHHHHHHHHHHHHHcCcEEEE--eee----c-ccCCCCCHHHHHHH
Confidence 99999765 477766 588999999999999998877777777766542 344 3 45555554443334
Q ss_pred HHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCcc
Q psy15088 551 VLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNL 630 (1291)
Q Consensus 551 i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa 630 (1291)
+.+-+|+
T Consensus 152 Ie~~iGi------------------------------------------------------------------------- 158 (603)
T COG0481 152 IEDIIGI------------------------------------------------------------------------- 158 (603)
T ss_pred HHHHhCC-------------------------------------------------------------------------
Confidence 3333322
Q ss_pred chHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHH
Q psy15088 631 DGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 631 ~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
+.. -.+.-|++.| .|+..
T Consensus 159 -------------------d~~--------------------------------------dav~~SAKtG-----~gI~~ 176 (603)
T COG0481 159 -------------------DAS--------------------------------------DAVLVSAKTG-----IGIED 176 (603)
T ss_pred -------------------Ccc--------------------------------------hheeEecccC-----CCHHH
Confidence 000 0122356666 78999
Q ss_pred HHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCC
Q psy15088 711 LVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPE 790 (1291)
Q Consensus 711 LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 790 (1291)
+|++|++.+|.|.. +++
T Consensus 177 iLe~Iv~~iP~P~g---------------------------------------------------------------~~~ 193 (603)
T COG0481 177 VLEAIVEKIPPPKG---------------------------------------------------------------DPD 193 (603)
T ss_pred HHHHHHhhCCCCCC---------------------------------------------------------------CCC
Confidence 99999999999952 345
Q ss_pred CCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEE
Q psy15088 791 GRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVL 870 (1291)
Q Consensus 791 ~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~ 870 (1291)
+|+-+.+|+.+.+.+.|. ++++||+.|++++||+|+.+.. ++...|.++-++.- ...+.+++.||+++-
T Consensus 194 ~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~t---------g~~y~V~evGvftP-~~~~~~~L~aGeVG~ 262 (603)
T COG0481 194 APLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMST---------GKEYEVDEVGIFTP-KMVKVDELKAGEVGY 262 (603)
T ss_pred CcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEec---------CCEEEEEEEeeccC-CccccccccCCceeE
Confidence 799999999999999876 9999999999999999999873 45677777776665 778899999999985
Q ss_pred E-ccCCC---cccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEEC---cC
Q psy15088 871 I-EGIDQ---PIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE---ES 943 (1291)
Q Consensus 871 I-~Gl~~---~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~---et 943 (1291)
+ .|+++ .-. ++|++... .+...+++..+- ++|++.+.+.|.+..|++.|.+||.+|...|.++.+.-| .-
T Consensus 263 ~~a~iK~v~d~~V-GDTiT~~~-~p~~e~LpGfk~-~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~AL 339 (603)
T COG0481 263 IIAGIKDVRDARV-GDTITLAS-NPATEPLPGFKE-VKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQAL 339 (603)
T ss_pred EEEeeeecccCcc-cceEeccC-CCccccCCCCCc-CCceEEEeecccChhHHHHHHHHHHhcccccceeeeccccchhc
Confidence 5 45543 222 67887543 344456666655 489999999999999999999999999999999988743 23
Q ss_pred CcEEEEe-cchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccc
Q psy15088 944 GEHVVLG-TGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQ 1022 (1291)
Q Consensus 944 Ge~ii~g-~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~ 1022 (1291)
|--.=+| +|-||||++.+||+++| ++++....|.|.|+-..++.... .+.
T Consensus 340 GfGfRcGFLGlLHmeiiqERLeREf-~ldlI~TaPsV~Y~v~~~~g~~~--------------------------~i~-- 390 (603)
T COG0481 340 GFGFRCGFLGLLHMEIIQERLEREF-DLDLITTAPSVVYKVELTDGEEI--------------------------EVD-- 390 (603)
T ss_pred cCceeehhhhHHHHHHHHHHHHHhh-CcceEecCCceEEEEEEcCCcEE--------------------------Eec--
Confidence 4334444 79999999999999999 79999999999999765432110 000
Q ss_pred eeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCC
Q psy15088 1023 IVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEP 1102 (1291)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~ep 1102 (1291)
+ |. .+|.. +.
T Consensus 391 ------N-------------------------------Ps-----~~P~~------~~---------------------- 400 (603)
T COG0481 391 ------N-------------------------------PS-----DLPDP------NK---------------------- 400 (603)
T ss_pred ------C-------------------------------hH-----hCCCh------hh----------------------
Confidence 0 00 01110 00
Q ss_pred ceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecccc
Q psy15088 1103 IRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPV 1182 (1291)
Q Consensus 1103 v~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~ 1182 (1291)
--.+.||+.++.|.+|++|+|.|+++++.+||...++++.
T Consensus 401 ----------------------------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl 440 (603)
T COG0481 401 ----------------------------------------IEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYL 440 (603)
T ss_pred ----------------------------------------hheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEe
Confidence 0135699999999999999999999999999999988876
Q ss_pred CCCCcEEEEEecccccc-cCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCC-------CCcccHHHHHHH
Q psy15088 1183 PGSPLYTIKAFIPAIDS-FGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEP-------QPATHLAREFMI 1254 (1291)
Q Consensus 1183 ~gt~~~~I~a~lPv~es-fgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~-------~~~~~~a~~~~~ 1254 (1291)
+.+...+...+|++|. ++|.+.|.|.|+|.|+|..+|.+|++-.--.++...+.+..+. ..+...+|+++.
T Consensus 441 -~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~lVK~dIlvNge~VDALs~ivHrd~A~~rgr~~~~ 519 (603)
T COG0481 441 -DQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESDLVKVDILVNGEKVDALSFIVHRDNAYERGRELVE 519 (603)
T ss_pred -cCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccceEEEEEEecCccccceeeeechhHHHHHHHHHHH
Confidence 4568999999999995 8999999999999999999999999755433333333333332 234456666666
Q ss_pred HHh
Q psy15088 1255 KTR 1257 (1291)
Q Consensus 1255 ~iR 1257 (1291)
+.+
T Consensus 520 KlK 522 (603)
T COG0481 520 KLK 522 (603)
T ss_pred HHH
Confidence 654
No 24
>KOG0469|consensus
Probab=100.00 E-value=1.9e-53 Score=474.53 Aligned_cols=194 Identities=45% Similarity=0.796 Sum_probs=190.0
Q ss_pred ChHHHhHHhhhCCceEEEEcccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKR 80 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~~ 80 (1291)
|+|||++|+|+|||++|+++|+|||||+|+||||||+||+||+++||+|+|+.|+|+|+|||||.++|+..|+.||||||
T Consensus 504 LvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEtvs~~ss~~~lsKSpNKH 583 (842)
T KOG0469|consen 504 LVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVSEESSQTCLSKSPNKH 583 (842)
T ss_pred HHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecccccccchhhhccCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchhhH
Q psy15088 81 NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSV 160 (1291)
Q Consensus 81 ~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~~~ 160 (1291)
|||||+|+|||+++.+.|++|.++.+++.|.+++.|+++|+||..++++||||||+.+|||+|+|.|++ .+|++|+
T Consensus 584 NRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll~D~TK~----vqylnEI 659 (842)
T KOG0469|consen 584 NRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLLVDQTKG----VQYLNEI 659 (842)
T ss_pred ceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEEEecchh----hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999966 5699999
Q ss_pred HHHHHhhhccccccCCCCCcccccceeEEecccccCCC
Q psy15088 161 KDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSP 198 (1291)
Q Consensus 161 ~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~a 198 (1291)
++|+++|||||+++|||++|.|||++|++.|+.+|+++
T Consensus 660 KdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADA 697 (842)
T KOG0469|consen 660 KDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADA 697 (842)
T ss_pred HHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhh
Confidence 99999999999999999999999999999999999996
No 25
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-50 Score=446.00 Aligned_cols=459 Identities=23% Similarity=0.323 Sum_probs=365.6
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
..+|||||++|+|||||||++.||.++|.... ...-..++||+...|+||||||-+....+.| ++++||++||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~--~e~v~ERvMDSnDlEkERGITILaKnTav~~-----~~~~INIvDT 75 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFRE--REEVAERVMDSNDLEKERGITILAKNTAVNY-----NGTRINIVDT 75 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcccccc--ccchhhhhcCccchhhhcCcEEEeccceeec-----CCeEEEEecC
Confidence 35899999999999999999999999886543 2345578999999999999999999999999 8999999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHh
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|||++|- --+.+..+|.+++++||.+|..|||+-+.++|.+.|+++++ .|| | .|+..+..+..+.++.+-+
T Consensus 76 PGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIV--VvN----K-iDrp~Arp~~Vvd~vfDLf 148 (603)
T COG1217 76 PGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV--VIN----K-IDRPDARPDEVVDEVFDLF 148 (603)
T ss_pred CCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEE--EEe----C-CCCCCCCHHHHHHHHHHHH
Confidence 9998774 33445566899999999999999999999999999999987 677 5 5777666666665554422
Q ss_pred CCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHH
Q psy15088 556 GIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNK 635 (1291)
Q Consensus 556 g~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~ 635 (1291)
+.+...+ +.++.
T Consensus 149 -~~L~A~d----------------------------eQLdF--------------------------------------- 160 (603)
T COG1217 149 -VELGATD----------------------------EQLDF--------------------------------------- 160 (603)
T ss_pred -HHhCCCh----------------------------hhCCC---------------------------------------
Confidence 1111111 00111
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhh-----hhhchhHH
Q psy15088 636 EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLV-----KRFNAEKS 710 (1291)
Q Consensus 636 ~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~-----~~~~g~~~ 710 (1291)
||+..|+..|.- ..-....+
T Consensus 161 -------------------------------------------------------PivYAS~~~G~a~~~~~~~~~~m~p 185 (603)
T COG1217 161 -------------------------------------------------------PIVYASARNGTASLDPEDEADDMAP 185 (603)
T ss_pred -------------------------------------------------------cEEEeeccCceeccCccccccchhH
Confidence 122211111100 00023578
Q ss_pred HHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCC
Q psy15088 711 LVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPE 790 (1291)
Q Consensus 711 LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 790 (1291)
|.+.|.+|+|.|.. |++
T Consensus 186 Lfe~I~~hvp~P~~---------------------------------------------------------------~~d 202 (603)
T COG1217 186 LFETILDHVPAPKG---------------------------------------------------------------DLD 202 (603)
T ss_pred HHHHHHHhCCCCCC---------------------------------------------------------------CCC
Confidence 99999999999962 345
Q ss_pred CCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEE
Q psy15088 791 GRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVL 870 (1291)
Q Consensus 791 ~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~ 870 (1291)
+|+-+.|+-+-.+++.|+ ++.||||+|++++||.|.++... ......+|.+++-+.|-++.++++|.|||||+
T Consensus 203 ~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~------g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa 275 (603)
T COG1217 203 EPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD------GTTENGRITKLLGFLGLERIEIEEAEAGDIVA 275 (603)
T ss_pred CCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC------CcEEeeEEEeeeeccceeeeecccccccCEEE
Confidence 789999999988888876 99999999999999999998732 24467899999999999999999999999999
Q ss_pred EccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCC----CCCh-----hHHHHHHHHHHHhCCceeEEE-
Q psy15088 871 IEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVN----PSEL-----PKMLDGLRKVNKSYPLLTTKV- 940 (1291)
Q Consensus 871 I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~----~~d~-----~kL~~~L~~L~~~DPsl~v~~- 940 (1291)
|.|+++.-. ++|+|+.. ...+++.+... +|.+++.+-..+ -.+- .++.+.|.+=.+.+-+++|..
T Consensus 276 iaG~~~~~i-gdTi~d~~---~~~aLp~l~iD-ePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t 350 (603)
T COG1217 276 IAGLEDINI-GDTICDPD---NPEALPALSVD-EPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEET 350 (603)
T ss_pred EcCcccccc-cccccCCC---CccCCCCcccC-CCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeec
Confidence 999988644 78998863 33455555554 788888876432 2221 246777777778888888875
Q ss_pred CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccc
Q psy15088 941 EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIE 1020 (1291)
Q Consensus 941 ~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~ 1020 (1291)
++-..+.++|-|||||-|+++.+|++ |.|+.||.|+|.||| +-
T Consensus 351 ~~pd~f~VsGRGELhLsILiE~MRRE--GfEl~VsrP~Vi~ke-id---------------------------------- 393 (603)
T COG1217 351 ESPDAFEVSGRGELHLSILIENMRRE--GFELQVSRPEVIIKE-ID---------------------------------- 393 (603)
T ss_pred CCCCeEEEeccceeehHHHHHHhhhc--ceEEEecCceEEEEe-cC----------------------------------
Confidence 55588999999999999999999998 799999999999998 21
Q ss_pred cceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCC
Q psy15088 1021 NQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCE 1100 (1291)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~ 1100 (1291)
+
T Consensus 394 ----------------------------------------------G--------------------------------- 394 (603)
T COG1217 394 ----------------------------------------------G--------------------------------- 394 (603)
T ss_pred ----------------------------------------------C---------------------------------
Confidence 1
Q ss_pred CCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecc
Q psy15088 1101 EPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDA 1180 (1291)
Q Consensus 1101 epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~ 1180 (1291)
...||+-.+.|.||+++.|.|+..|..|+|...++.
T Consensus 395 --------------------------------------------~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~ 430 (603)
T COG1217 395 --------------------------------------------VKCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMA 430 (603)
T ss_pred --------------------------------------------cCcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcc
Confidence 012688889999999999999999999999998877
Q ss_pred ccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCC
Q psy15088 1181 PVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGD 1229 (1291)
Q Consensus 1181 ~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~d 1229 (1291)
+ .|.+...+...+|.+-.+||.++.-+.|+|.|.....|+||+|+.++
T Consensus 431 ~-~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~ 478 (603)
T COG1217 431 P-DGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGE 478 (603)
T ss_pred c-CCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccc
Confidence 6 46679999999999999999999999999999999999999999874
No 26
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-44 Score=400.85 Aligned_cols=434 Identities=17% Similarity=0.200 Sum_probs=320.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCcc----ccccccccccccccccCceeeeccceecccccCCCCeEEE
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAE----EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMN 473 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~----~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~ 473 (1291)
++-|++|||+|||+|||||++.||..-|+|...+++ .+..+..|++..|++||||+.++.+.|.| +++.+|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-----~~~~iN 84 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-----ADCLVN 84 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-----CCeEEe
Confidence 467899999999999999999999999998877665 23456889999999999999999999999 899999
Q ss_pred EEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHH
Q psy15088 474 IFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAV 551 (1291)
Q Consensus 474 liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i 551 (1291)
|+|||||.+|. +.+.+-.+|.||.|||+..|+++||+++...|.-.++|.+- ||| | ||+..-++-+-|+++
T Consensus 85 LLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~T--FiN----K-lDR~~rdP~ELLdEi 157 (528)
T COG4108 85 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFT--FIN----K-LDREGRDPLELLDEI 157 (528)
T ss_pred ccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEE--Eee----c-cccccCChHHHHHHH
Confidence 99999997654 33333334789999999999999999999999999999864 998 6 888887777778888
Q ss_pred HHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccC-------ce--eecC
Q psy15088 552 LDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSN-------KF--LIDG 622 (1291)
Q Consensus 552 ~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~-------~~--liDG 622 (1291)
.+.|++ +.-|+ .|||+.+..|.| +.++.+..-..+. +. ..+|
T Consensus 158 E~~L~i---------~~~Pi----------tWPIG~gk~F~G----------vy~l~~~~v~~y~~~~~~~~~~~~~~~~ 208 (528)
T COG4108 158 EEELGI---------QCAPI----------TWPIGMGKDFKG----------VYHLYNDEVELYESGHTDQERRADIVKG 208 (528)
T ss_pred HHHhCc---------ceecc----------cccccCCcccce----------eeeeccCEEEEeccCCCccccccccccC
Confidence 888876 23332 489999888764 4555444211100 00 1111
Q ss_pred CCC-ccCcc--chHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecch
Q psy15088 623 FPR-NQNNL--DGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAK 699 (1291)
Q Consensus 623 fPr-~~~qa--~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k 699 (1291)
+-. ...++ +.....+.+.++++....-+. +.+ ....+++.||++||+..
T Consensus 209 ~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~F----------------------d~~------~fl~G~~TPVFFGSAl~ 260 (528)
T COG4108 209 LDNPELDALLGEDLAEQLREELELVQGAGNEF----------------------DLE------AFLAGELTPVFFGSALG 260 (528)
T ss_pred CCChhHHhhhchHHHHHHHHHHHHHHhhcccc----------------------CHH------HHhcCCccceEehhhhh
Confidence 100 00000 111122222222211111100 000 23457899999999999
Q ss_pred hhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCch
Q psy15088 700 NLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSD 779 (1291)
Q Consensus 700 ~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1291)
| -|++.+||.++++-|+|...+... +.
T Consensus 261 N-----FGV~~~L~~~~~~AP~P~~~~a~~------~~------------------------------------------ 287 (528)
T COG4108 261 N-----FGVDHFLDALVDWAPSPRARQADT------RE------------------------------------------ 287 (528)
T ss_pred c-----cCHHHHHHHHHhhCCCCCcccCCc------Cc------------------------------------------
Confidence 9 899999999999999998654210 00
Q ss_pred hhhhhhccCC-CCCeEEEEEeecc--CCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCc
Q psy15088 780 VARDMKACNP-EGRLMVHSSKMYP--TEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARY 856 (1291)
Q Consensus 780 ~~~~~~~~d~-~~pl~~~V~K~~~--~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~ 856 (1291)
.+| +..+.+||||++. ++....++||.||.||.+.+|+++.... .++..++..-..+++++
T Consensus 288 -------v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~r---------tGK~~~ls~~~~f~A~d 351 (528)
T COG4108 288 -------VEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVR---------TGKDVKLSDALTFMAQD 351 (528)
T ss_pred -------ccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCceeeeee---------cCCceEecchHhhhhhh
Confidence 011 1248899999987 3545566999999999999999999765 46778898889999999
Q ss_pred eeeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCce
Q psy15088 857 KVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLL 936 (1291)
Q Consensus 857 ~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl 936 (1291)
++.+++|.||||++|..-...-. ++|++.. ....|.++..- .|=+...|..+++....+|.+||.+|++|-..=
T Consensus 352 Re~ve~A~aGDIIGl~nhG~~~I-GDT~t~G----e~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ 425 (528)
T COG4108 352 RETVEEAYAGDIIGLHNHGTIQI-GDTFTEG----EKLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQ 425 (528)
T ss_pred hhhhhhccCCCeEeccCCCceee-cceeecC----ceeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeE
Confidence 99999999999999975433322 6777764 23345555322 476777888899999999999999999987643
Q ss_pred eEEECcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcC
Q psy15088 937 TTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVAD 976 (1291)
Q Consensus 937 ~v~~~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~ 976 (1291)
-++-..+++.|+...|.||+|++.+||+.+| ++++...+
T Consensus 426 ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY-~ve~~~e~ 464 (528)
T COG4108 426 VFKPLDGNDLILGAVGQLQFEVVQARLKNEY-NVEAVFEP 464 (528)
T ss_pred EEecCCCCCceEEeeeeeehHHHHHHHHhhh-CCeEEEee
Confidence 3344677999999999999999999999999 78866644
No 27
>KOG0468|consensus
Probab=100.00 E-value=6.2e-43 Score=402.01 Aligned_cols=198 Identities=82% Similarity=1.351 Sum_probs=194.7
Q ss_pred ChHHHhHHhhhCCceEEEEcccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKR 80 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~~ 80 (1291)
|++||++.++++|.+.+.+||+|||+|.|+|||+|+|.|+|||+.|+.|||+||+|+|.|.||+.+.|+.+|++.+||+.
T Consensus 602 mldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfaetpnkk 681 (971)
T KOG0468|consen 602 MLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAETPNKK 681 (971)
T ss_pred HHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhccCCCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchhhH
Q psy15088 81 NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSV 160 (1291)
Q Consensus 81 ~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~~~ 160 (1291)
|+|+|.||||...+++.|++|.+.+.++.+.++++|+.+|+||...+++||||||+.+|||||+|+|.+.++++.++..+
T Consensus 682 nkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk~ll~~v 761 (971)
T KOG0468|consen 682 NKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSV 761 (971)
T ss_pred CceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccCCCCCcccccceeEEecccccCCC
Q psy15088 161 KDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSP 198 (1291)
Q Consensus 161 ~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~a 198 (1291)
|+||++||||++.+||||+||.|++.|++.|+.+...+
T Consensus 762 kesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~ 799 (971)
T KOG0468|consen 762 KESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEP 799 (971)
T ss_pred HHHHHHHHHHHhccCCccCCcccceeEEEeecccCccc
Confidence 99999999999999999999999999999999998885
No 28
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=1.6e-40 Score=348.60 Aligned_cols=178 Identities=78% Similarity=1.298 Sum_probs=170.4
Q ss_pred CceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeC
Q psy15088 976 DPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFG 1055 (1291)
Q Consensus 976 ~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~g 1055 (1291)
+|+|+|||||++.+...++++||||||+++++++||++++.++|++|.+....+.+.+.++|+++||||.+++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999999888999999999999999999999999999999988878889999999999999999999999999
Q ss_pred CCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHH
Q psy15088 1056 PEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVA 1135 (1291)
Q Consensus 1056 p~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~ 1135 (1291)
|+..|+|+|+|.|.+.+.+..++++++++|++||+||+++||||+|||+||+|+|+|+.+|.+..|++++|+++++|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999998776666789999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHhCCCceeccEEEE
Q psy15088 1136 YSAFLMATPRLMEPYLFV 1153 (1291)
Q Consensus 1136 ~~a~l~a~p~LlEPi~~~ 1153 (1291)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999985
No 29
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=339.00 Aligned_cols=248 Identities=17% Similarity=0.150 Sum_probs=208.9
Q ss_pred cccccCCCccccccCCCceeeecCceeEEecCCCcccc---------HHHHHHHhhhcCcEEEEEECCCCCchhHHHHHH
Q psy15088 191 EGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNF---------SDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261 (1291)
Q Consensus 191 D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~---------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~ 261 (1291)
++..+..+++|||+.+...++. ++.|.+|||||..+. ..|+..|+.+||++|||||+++|++++|+++++
T Consensus 28 ~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~ 106 (444)
T COG1160 28 IAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAK 106 (444)
T ss_pred eeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH
Confidence 3566889999999999888876 899999999999742 256899999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcc
Q psy15088 262 HAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAV 341 (1291)
Q Consensus 262 ~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~ 341 (1291)
++|+.++|+|||+||+|....+ ....|||. ||++++ +.+||.
T Consensus 107 ~Lr~~~kpviLvvNK~D~~~~e--~~~~efys---------------lG~g~~---------------------~~ISA~ 148 (444)
T COG1160 107 ILRRSKKPVILVVNKIDNLKAE--ELAYEFYS---------------LGFGEP---------------------VPISAE 148 (444)
T ss_pred HHHhcCCCEEEEEEcccCchhh--hhHHHHHh---------------cCCCCc---------------------eEeehh
Confidence 9998899999999999997432 22345665 776443 778999
Q ss_pred cccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHH
Q psy15088 342 EVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLI 421 (1291)
Q Consensus 342 ~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll 421 (1291)
||.|.+ +|.|.+++++. ..-...+.+ ......|||+|+||+|||||+|+|+
T Consensus 149 Hg~Gi~-----------dLld~v~~~l~-~~e~~~~~~-----------------~~~~ikiaiiGrPNvGKSsLiN~il 199 (444)
T COG1160 149 HGRGIG-----------DLLDAVLELLP-PDEEEEEEE-----------------ETDPIKIAIIGRPNVGKSSLINAIL 199 (444)
T ss_pred hccCHH-----------HHHHHHHhhcC-Ccccccccc-----------------cCCceEEEEEeCCCCCchHHHHHhc
Confidence 999987 67777776542 110000000 0245799999999999999999999
Q ss_pred hhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc-------------cccccccc
Q psy15088 422 RQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS-------------PVTLLLPD 488 (1291)
Q Consensus 422 ~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh-------------~~~~~l~~ 488 (1291)
++.|.++++.+ |+|+|+.++.|+| +++.|.+|||+|. ++.+++++
T Consensus 200 geeR~Iv~~~a-----------------GTTRD~I~~~~e~-----~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 200 GEERVIVSDIA-----------------GTTRDSIDIEFER-----DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred cCceEEecCCC-----------------CccccceeeeEEE-----CCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 99999999998 9999999999999 8999999999998 34569999
Q ss_pred ccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 489 VKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 489 ~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
++.||++++|+||..|+..|+++++..+.+.|++.++ .+|
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI--vvN 297 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI--VVN 297 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE--EEE
Confidence 9999999999999999999999999999999999976 666
No 30
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=1.4e-34 Score=306.41 Aligned_cols=177 Identities=60% Similarity=1.022 Sum_probs=161.7
Q ss_pred CceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeC
Q psy15088 976 DPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFG 1055 (1291)
Q Consensus 976 ~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~g 1055 (1291)
+|+|+|||||.+.+...+..+++|+|++++++++||+.++.+.++++...+....+.+.+.+.++++|+.+.+++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999988777889999999999999999999999999998877666666667788889999999999999999
Q ss_pred CCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHH
Q psy15088 1056 PEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVA 1135 (1291)
Q Consensus 1056 p~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~ 1135 (1291)
|++.|+|||+|.+.+...++...++++++|++||+||+++||||+|||+||+|+|.|+.+|.+..+++++|+++++|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 99999999999886544333457899999999999999999999999999999999999998877889999999999999
Q ss_pred HHHHHhCCCceeccEEE
Q psy15088 1136 YSAFLMATPRLMEPYLF 1152 (1291)
Q Consensus 1136 ~~a~l~a~p~LlEPi~~ 1152 (1291)
++||++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 31
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=3.8e-34 Score=300.56 Aligned_cols=143 Identities=74% Similarity=1.285 Sum_probs=137.3
Q ss_pred CCeeeeeeeeeccCCcceeeeeCCCCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEec
Q psy15088 55 DPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFG 134 (1291)
Q Consensus 55 ~P~V~frETi~~~~~~~~~~~s~n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fg 134 (1291)
+|+|+|||||++.|...|++||||+||||||+|+||+++++++|++|.+...++.+.+++.|+++||||.+++++|||||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999999989999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCCeEEEcCCCCCcccccchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 135 PEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 135 p~~~g~Nil~~~t~~~~~~~~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
|++.|||+|+|.|.+.+.+..++++++++|++|||||+.+||||+||++|++|.|.|+.+|.+
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d 143 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASE 143 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccc
Confidence 999999999999987666677899999999999999999999999999999999999999976
No 32
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.6e-33 Score=361.67 Aligned_cols=193 Identities=46% Similarity=0.795 Sum_probs=179.3
Q ss_pred ChHHHhHHhhhCCceEEEEcccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKR 80 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~~ 80 (1291)
|.+||++|+++||+++++.+||||+||+|+||+|||+|++||+++|++|++++|+|.|+|||||++.+...+..+++++|
T Consensus 498 L~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~~s~~~~~~~~~~~~ 577 (836)
T PTZ00416 498 LVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTEESSQTCLSKSPNKH 577 (836)
T ss_pred HHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecccccceEEEECCCCC
Confidence 57999999999999999889999999999999999999999999999999999999999999999998888889999999
Q ss_pred eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchhhH
Q psy15088 81 NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSV 160 (1291)
Q Consensus 81 ~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~~~ 160 (1291)
++++++++|||+++.+.++.+.+.+....+.+.+.+...|+|+...+++||+|||+..|+|||+|.+.+ ..++.++
T Consensus 578 ~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~~~~----~~~~~~~ 653 (836)
T PTZ00416 578 NRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTKG----VQYMNEI 653 (836)
T ss_pred eeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEecCCc----ccchHHH
Confidence 999999999999999999999876655555566667778899998999999999999999999999865 5678899
Q ss_pred HHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 161 KDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 161 ~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
+++|.+||+||+.+||||+||++||+|.|.|+.+|.+
T Consensus 654 ~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~ 690 (836)
T PTZ00416 654 KDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHAD 690 (836)
T ss_pred HHHHHHHHHHHHhcCcccCCcccceEEEEEEeecccc
Confidence 9999999999999999999999999999999999874
No 33
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=4.9e-33 Score=358.10 Aligned_cols=193 Identities=41% Similarity=0.737 Sum_probs=178.9
Q ss_pred ChHHHhHHhhhCCceEEEEcccccEEEEecchhhHHHHHHHHHhhhc-CcceeecCCeeeeeeeeeccCCcceeeeeCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYS-EIDIKVADPVVAFCETVVETSSLKCFAETPNK 79 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~~etGE~ii~~~GElHLe~~l~dL~~~~~-~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~ 79 (1291)
|.+||++|+++||+++++.+||||+||+|+||||||+|++||+++|+ +|++++|+|+|+|||||++.+...+..+++++
T Consensus 504 L~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrETI~~~~~~~~~~~~~~~ 583 (843)
T PLN00116 504 LVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSCRTVMSKSPNK 583 (843)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEecccccccCcEEEecCCc
Confidence 57999999999999999889999999999999999999999999998 89999999999999999998776666788999
Q ss_pred CeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchhh
Q psy15088 80 RNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGS 159 (1291)
Q Consensus 80 ~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~~ 159 (1291)
|++++++++||+.++++.|+.+.+...++.+.+.+.+...+||+...+++||||||+..|+|+|+|.+.+ ..++++
T Consensus 584 ~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~~~~~~g----~~~~~~ 659 (843)
T PLN00116 584 HNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKG----VQYLNE 659 (843)
T ss_pred eEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEEEECCcc----hhhHHH
Confidence 9999999999999999999999877666666667778788899999999999999999999999999865 467889
Q ss_pred HHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 160 VKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 160 ~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
++++|++||+||+.+||||+||++||+|.|.|+.+|.+
T Consensus 660 i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d 697 (843)
T PLN00116 660 IKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHAD 697 (843)
T ss_pred HHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCc
Confidence 99999999999999999999999999999999999974
No 34
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=1.2e-30 Score=331.77 Aligned_cols=186 Identities=28% Similarity=0.499 Sum_probs=169.2
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNK 79 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~ 79 (1291)
|.+||++|+++||+++++. +||||++|+|+||||||+|+++|+++| +|++++|+|.|+|||||+..+.. ...+++++
T Consensus 406 L~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~-~vev~~~~P~V~YrETi~~~~~~-~~~~~~~~ 483 (720)
T TIGR00490 406 LIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY-GLDVETSPPIVVYRETVTGTSPV-VEGKSPNK 483 (720)
T ss_pred HHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh-CCceeecCCEEEEEEeccccccc-eEEEcCCC
Confidence 5789999999999999999 789999999999999999999999999 99999999999999999988762 45677999
Q ss_pred CeEEEEEEEeCChhHHHHHHccccc-ccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchh
Q psy15088 80 RNKITMIAEPLEKGLAEDIENQIVH-IAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLG 158 (1291)
Q Consensus 80 ~~~~~~~~~Pl~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~ 158 (1291)
|++++++++|||.++.++|++|.+. +....+.+...|. ++||+...+++||+|| ++|+|+|.+.+ ..+++
T Consensus 484 ~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~----~~~~f~~~~~g----g~i~~ 554 (720)
T TIGR00490 484 HNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLI-EAGMDSEEAARVEEYY----EGNLFINMTRG----IQYLD 554 (720)
T ss_pred cEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHH-hcCCchhhhcCEEEec----CCeEEEECCCC----CCCHH
Confidence 9999999999999999999999764 2345677788885 5899999999999998 68999999865 34789
Q ss_pred hHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 159 SVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 159 ~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
+|++||.+||+||+.+||||+||++||+|.|.|+.+|.+
T Consensus 555 ~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~ 593 (720)
T TIGR00490 555 ETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHED 593 (720)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccc
Confidence 999999999999999999999999999999999999965
No 35
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.97 E-value=2.9e-30 Score=291.16 Aligned_cols=260 Identities=20% Similarity=0.277 Sum_probs=204.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||||+||+|||||||+++|++.+|.+...+.+.++++++|+.++|++||+|++++..+|.| +++.+++||||||.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liDTPG~~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-----KDHRINIIDTPGHV 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-----CCEEEEEEECCCcH
Confidence 8999999999999999999999998776677778899999999999999999999999999 79999999999997
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHM 559 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l 559 (1291)
.+. ...++..+|++++|+|+..|+..|++++++.+...++|.++ |+| | +|....+.+..+.++...++.
T Consensus 76 df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~iv--viN----K-~D~~~a~~~~~~~~l~~~l~~-- 146 (270)
T cd01886 76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIA--FVN----K-MDRTGADFFRVVEQIREKLGA-- 146 (270)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEE----C-CCCCCCCHHHHHHHHHHHhCC--
Confidence 553 45566677899999999999999999999999999999976 887 6 676544444445555555432
Q ss_pred ChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc-----eeecCCCCcc-CccchH
Q psy15088 560 NKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK-----FLIDGFPRNQ-NNLDGW 633 (1291)
Q Consensus 560 ~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~-----~liDGfPr~~-~qa~~~ 633 (1291)
.+. +.++|++....| .+++|+++++.+.|.. +-....|... ..++.+
T Consensus 147 ---------~~~--------~~~~Pisa~~~f----------~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~ 199 (270)
T cd01886 147 ---------NPV--------PLQLPIGEEDDF----------RGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEA 199 (270)
T ss_pred ---------Cce--------EEEeccccCCCc----------eEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHH
Confidence 111 246898887665 5799999998765411 2222334321 234556
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhchhHHH
Q psy15088 634 NKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 634 ~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~g~~~L 711 (1291)
+..+.+.+ .+ .++.+++||++.+ +.+.++|.+.| ...++.+.||+|||+.++ .|++.|
T Consensus 200 r~~l~e~v-------ae-~dd~L~e~yl~~~-------~~~~~el~~~l~~~~~~~~~~PV~~gSa~~~-----~Gi~~l 259 (270)
T cd01886 200 REELIETL-------AE-FDDELMEKYLEGE-------EITEEEIKAAIRKGTIANKIVPVLCGSAFKN-----KGVQPL 259 (270)
T ss_pred HHHHHHHH-------hc-CCHHHHHHHhCCC-------CCCHHHHHHHHHHHHHcCcEEEEEeCcCCCC-----cCHHHH
Confidence 66555543 23 3567888888764 47888898877 457799999999999999 899999
Q ss_pred HHHHHhhCCCC
Q psy15088 712 VEMCVKHIPSP 722 (1291)
Q Consensus 712 LD~Iv~~lPsP 722 (1291)
||.+++++|+|
T Consensus 260 ld~i~~~~p~p 270 (270)
T cd01886 260 LDAVVDYLPSP 270 (270)
T ss_pred HHHHHHhcCCC
Confidence 99999999998
No 36
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.97 E-value=5.7e-30 Score=326.54 Aligned_cols=186 Identities=31% Similarity=0.562 Sum_probs=168.1
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNK 79 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~ 79 (1291)
|.+||++|+++||++++.. +||||++|+|+||||||+|++||+++| +|++++|+|.|+|||||.+.+. .+.++++|+
T Consensus 406 L~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~-~vev~~~~p~V~yrETI~~~~~-~~~~~~~~~ 483 (731)
T PRK07560 406 LIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY-GIEVVTSEPIVVYRETVRGKSQ-VVEGKSPNK 483 (731)
T ss_pred HHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh-CCceEecCCEEEEEEecccCcc-ceEEECCCC
Confidence 5789999999999999999 689999999999999999999999999 9999999999999999998764 356789999
Q ss_pred CeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhh---hcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccc
Q psy15088 80 RNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQS---KYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGL 156 (1291)
Q Consensus 80 ~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~ 156 (1291)
|++++++++|||++..+.++++.+....+.+.+ +.|.. ++||+...+++||+|+ ++|+|+|.+.+ ..+
T Consensus 484 ~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~----~~~~f~~~~~g----g~~ 554 (731)
T PRK07560 484 HNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY----NGNVFIDMTKG----IQY 554 (731)
T ss_pred ceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc----CCeEEEECCCC----ccC
Confidence 999999999999999999999987655454444 55554 7899999999999996 78999999865 446
Q ss_pred hhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 157 LGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 157 ~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
+++|+++|.+||+||+.+||||+||++||+|.|.|+.+|.+
T Consensus 555 ~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d 595 (731)
T PRK07560 555 LNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHED 595 (731)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeeccc
Confidence 89999999999999999999999999999999999999975
No 37
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.96 E-value=1.2e-29 Score=268.71 Aligned_cols=143 Identities=58% Similarity=0.971 Sum_probs=131.8
Q ss_pred CCeeeeeeeeeccCCcceeeeeCCCCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEec
Q psy15088 55 DPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFG 134 (1291)
Q Consensus 55 ~P~V~frETi~~~~~~~~~~~s~n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fg 134 (1291)
+|+|||||||++.+...++++|+|+||+|+++|+|||++++++|++|...+....+.+.+.+.+.++|+..++++|||||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999999778999999999999999999999999999999988777777777888889999998899999999
Q ss_pred cCCCCCeEEEcCCCCCcccccchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 135 PEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 135 p~~~g~Nil~~~t~~~~~~~~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
|++.|||||+|.|.+.+..+..+++++++|++||+||+.+||||+||++|++|.+.++.+|..
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~ 143 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHAD 143 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeeccc
Confidence 999999999999976544444589999999999999999999999999999999999999876
No 38
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.95 E-value=1.8e-28 Score=276.33 Aligned_cols=253 Identities=17% Similarity=0.114 Sum_probs=187.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccc----cccccccccccccccCceeeeccceecccccCCCCeEEEE
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE----KNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNI 474 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~----~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~l 474 (1291)
++|||||+||+|+|||||+++|++.++.+.+.+.+. .+.+++|+.+.|++||+|+.++..++.| +++.++|
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-----~~~~i~l 75 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-----RDCVINL 75 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-----CCEEEEE
Confidence 479999999999999999999999999888776655 4788999999999999999999999999 8999999
Q ss_pred EeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHH
Q psy15088 475 FDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVL 552 (1291)
Q Consensus 475 iDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~ 552 (1291)
+|||||..+. +..++..+|++|+|+|+..+++.++.++++.+...++|+++ |+| | +|....++...+.++.
T Consensus 76 iDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~ii--vvN----K-~D~~~a~~~~~~~~l~ 148 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIIT--FIN----K-LDREGRDPLELLDEIE 148 (267)
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEE--EEE----C-CccCCCCHHHHHHHHH
Confidence 9999997654 44556678999999999999999999999998888999776 887 6 5655444444455665
Q ss_pred HHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEccccccccc-Cc-----eeecCCCCc
Q psy15088 553 DQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITS-NK-----FLIDGFPRN 626 (1291)
Q Consensus 553 ~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~-~~-----~liDGfPr~ 626 (1291)
+.+|.+ .+ +.|+|++.+..| .+++|+++++.+.+ .+ +-....|.+
T Consensus 149 ~~l~~~-----------~~--------~~~~Pi~~~~~~----------~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~ 199 (267)
T cd04169 149 EELGID-----------CT--------PLTWPIGMGKDF----------KGVYDRRTGEVELYDRGAGGATIAPEETKGL 199 (267)
T ss_pred HHHCCC-----------ce--------eEEecccCCCce----------EEEEEhhhCEEEEecCCCCCccceeccCCcc
Confidence 555431 11 237898887766 47899999876643 10 111111221
Q ss_pred cCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhh
Q psy15088 627 QNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKR 704 (1291)
Q Consensus 627 ~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~ 704 (1291)
..+.+.+..+ .+++++++.. +...+.+.+.+ ...++.+.||+|||+.+|
T Consensus 200 ------~~e~~~e~~~------------~l~e~~~e~~-------~~~~~~~~~~~~~~~~~~~~~Pv~~gsa~~~---- 250 (267)
T cd04169 200 ------DDPKLDELGG------------DLAEQLREEL-------ELLEGAGPEFDQEAFLAGELTPVFFGSALNN---- 250 (267)
T ss_pred ------cHHHHHhcCH------------HHHHHHhCCC-------ccchhhhHHHhHHHHHcCCEEEEEecccccC----
Confidence 1233444333 3444444321 22333344433 557789999999999999
Q ss_pred hchhHHHHHHHHhhCCCC
Q psy15088 705 FNAEKSLVEMCVKHIPSP 722 (1291)
Q Consensus 705 ~~g~~~LLD~Iv~~lPsP 722 (1291)
.|++.|||+|++++|+|
T Consensus 251 -~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 251 -FGVQELLDALVDLAPAP 267 (267)
T ss_pred -cCHHHHHHHHHHHCCCC
Confidence 89999999999999998
No 39
>KOG0467|consensus
Probab=99.94 E-value=4.3e-28 Score=286.03 Aligned_cols=188 Identities=32% Similarity=0.563 Sum_probs=148.8
Q ss_pred ChHHHhHHhhhCCceEEEEcccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcc-------ee
Q psy15088 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLK-------CF 73 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~-------~~ 73 (1291)
|++|||+|+++|||+++.++++|||+++++||+|||+|++||++ |++++|++|+|+||||||+++.|.+. ..
T Consensus 487 L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~ 565 (887)
T KOG0467|consen 487 LVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVPFRETIIEDSDLLANLSIGQET 565 (887)
T ss_pred HHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccchhhhccccchhhhhhhcCccc
Confidence 57999999999999999999999999999999999999999999 99999999999999999998877654 22
Q ss_pred eeeCCCCeEEEEEEEeCChhHHHHHHcccccccc--------------------cHHHHHHHHhhhc--------Ccchh
Q psy15088 74 AETPNKRNKITMIAEPLEKGLAEDIENQIVHIAW--------------------NKKRLGEFFQSKY--------DWDLL 125 (1291)
Q Consensus 74 ~~s~n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~--------~~~~~ 125 (1291)
...+++..+|.+++.||+.-+++++.++.+...+ ...++...+...+ -| .
T Consensus 566 ~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~~~ek~~e~~~--~ 643 (887)
T KOG0467|consen 566 KCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLYEFEKPREKLG--S 643 (887)
T ss_pred ccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHHhhccccHHHHH--H
Confidence 4678899999999999999999988877532110 0001111111111 12 1
Q ss_pred ccCeEEEeccCCCCCeEEEcCCCCCcc--ccc--chhhHHHHHHhhhccccccCCCCCcccccceeEEec
Q psy15088 126 AARSIWAFGPEVTGPNILVDDTLPSEV--DKG--LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIRE 191 (1291)
Q Consensus 126 ~~~~i~~fgp~~~g~Nil~~~t~~~~~--~~~--~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D 191 (1291)
..+++|||||.++|||||+|.+..... .++ +...+.+++++|||.|+.+||||.||++|++|.+..
T Consensus 644 ~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es 713 (887)
T KOG0467|consen 644 FKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVLES 713 (887)
T ss_pred HHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEeec
Confidence 237899999999999999997632110 011 222388999999999999999999999999999887
No 40
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.93 E-value=3.2e-26 Score=254.02 Aligned_cols=233 Identities=16% Similarity=0.234 Sum_probs=183.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+|+||+|+|||||+++|++..+.+.+.+.++.+.+++|+.++|++||+|+.+...++.| +++.++++|||||.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-----~~~~i~liDTPG~~ 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-----EDTKVNLIDTPGHM 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-----CCEEEEEEeCCCcc
Confidence 7999999999999999999999999888888888899999999999999999999999999 78999999999997
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHM 559 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l 559 (1291)
.+. ...++..+|++++|+|+..|+..|++++++.+...++|+++ |+| | +|...++++..+.++.++++.++
T Consensus 76 ~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~ii--vvN----K-~D~~~a~~~~~~~~i~~~~~~~~ 148 (237)
T cd04168 76 DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTII--FVN----K-IDRAGADLEKVYQEIKEKLSSDI 148 (237)
T ss_pred chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEE----C-ccccCCCHHHHHHHHHHHHCCCe
Confidence 654 44556677999999999999999999999999889999876 887 5 67766666666777777665421
Q ss_pred ChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHHHH
Q psy15088 560 NKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMAD 639 (1291)
Q Consensus 560 ~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l~e 639 (1291)
- +-|+|+ +.+.+. ....++..+.+
T Consensus 149 ~-------------------~~~~p~------------------~~~~~~-------------------~~~~~~~~l~e 172 (237)
T cd04168 149 V-------------------PMQKVG------------------LAPNIC-------------------ETNEIDDEFWE 172 (237)
T ss_pred E-------------------EEECCc------------------Eeeeee-------------------eeeeccHHHHH
Confidence 1 123441 111100 01112233433
Q ss_pred HHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhchhHHHHHHHHh
Q psy15088 640 KVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVK 717 (1291)
Q Consensus 640 ~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~ 717 (1291)
.+. + .++.+++++++.+ +.+.++|.+.+ ....+.+.||+|||+.++ .|++.|||++++
T Consensus 173 ~va-------e-~dd~l~e~yl~~~-------~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~-----~Gv~~ll~~~~~ 232 (237)
T cd04168 173 TLA-------E-GDDELLEKYLEGG-------PIEELELDNELSARIAKRKVFPVYHGSALKG-----IGIEELLEGITK 232 (237)
T ss_pred HHh-------c-CCHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhCCeEEEEEccccCC-----cCHHHHHHHHHH
Confidence 321 2 3567888888754 47788888877 457799999999999999 999999999999
Q ss_pred hCCCC
Q psy15088 718 HIPSP 722 (1291)
Q Consensus 718 ~lPsP 722 (1291)
++|||
T Consensus 233 ~~p~~ 237 (237)
T cd04168 233 LFPTS 237 (237)
T ss_pred hcCCC
Confidence 99998
No 41
>CHL00071 tufA elongation factor Tu
Probab=99.93 E-value=1.2e-25 Score=269.19 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=107.3
Q ss_pred cCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEE
Q psy15088 394 MDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMN 473 (1291)
Q Consensus 394 ~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~ 473 (1291)
+..+...+||+|+||+|||||||+++|++..+.+.. ........+|..++|++||+|++++...|.+ +++.|+
T Consensus 6 ~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-----~~~~~~ 78 (409)
T CHL00071 6 FERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYET-----ENRHYA 78 (409)
T ss_pred ccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEcc-----CCeEEE
Confidence 334455689999999999999999999998766532 2223345899999999999999999888877 788999
Q ss_pred EEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 474 IFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 474 liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||||||..+. ++.++..+|++++|+|+..|+.+||++++..+...|+|+++ .++|
T Consensus 79 ~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iI-vvvN 136 (409)
T CHL00071 79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIV-VFLN 136 (409)
T ss_pred EEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEE-EEEE
Confidence 99999997654 66777889999999999999999999999999999998652 3566
No 42
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-25 Score=250.32 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=118.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccC-------Ccc--c----cccccccccccccccCceeeeccceecccccCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQ-------PAE--E----KNLRYTDTLFTEQERGVSIKASPVTLLLPDVKG 467 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~-------~~~--~----~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~ 467 (1291)
.|++++||+|||||||+++|+++.|.+-.. .+. . .-+++||+.++|||||+||+.+..+|+.
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet----- 82 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET----- 82 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-----
Confidence 499999999999999999999999977532 111 1 2267999999999999999999988887
Q ss_pred CCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-------cchhhHhhHHHHHhhcCccchhhhhhhHHHHHHH
Q psy15088 468 KNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-------WDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVA 538 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-------~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d 538 (1291)
..+.|+|+|||||.+|. ++.++.+||+||+|||+..| .++||++|+-.+...|+..++ ..|| | ||
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI-VavN----K-MD 156 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI-VAVN----K-MD 156 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE-EEEE----c-cc
Confidence 78899999999999876 99999999999999999988 799999999999999999985 4565 5 66
Q ss_pred HhhCCccCcHHHHHHHh
Q psy15088 539 QVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 539 ~~~~~~~~~l~~i~~~l 555 (1291)
.+. ..++.+.++.+++
T Consensus 157 ~v~-wde~rf~ei~~~v 172 (428)
T COG5256 157 LVS-WDEERFEEIVSEV 172 (428)
T ss_pred ccc-cCHHHHHHHHHHH
Confidence 543 4444566665543
No 43
>PRK12736 elongation factor Tu; Reviewed
Probab=99.93 E-value=8.9e-25 Score=260.59 Aligned_cols=277 Identities=19% Similarity=0.259 Sum_probs=194.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
..+||+|+||+|||||||+++|++..+.. .........++|.+++|++||+|++++.+.|.+ +++.|+|||||
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~--g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-----~~~~i~~iDtP 83 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAER--GLNQAKDYDSIDAAPEEKERGITINTAHVEYET-----EKRHYAHVDCP 83 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhh--ccccccchhhhcCCHHHHhcCccEEEEeeEecC-----CCcEEEEEECC
Confidence 34799999999999999999999654321 001112234799999999999999998887766 78899999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhC
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLG 556 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg 556 (1291)
||..+. ++.++..+|++++|+|+..|+.+||++++..+...|+|+++ .++| | +|.+. .++.+..+..+
T Consensus 84 Gh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~I-vviN----K-~D~~~--~~~~~~~i~~~-- 153 (394)
T PRK12736 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLV-VFLN----K-VDLVD--DEELLELVEME-- 153 (394)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEE-EEEE----e-cCCcc--hHHHHHHHHHH--
Confidence 997654 66777789999999999999999999999999999998752 3566 5 45321 00101111111
Q ss_pred CCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHH
Q psy15088 557 IHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKE 636 (1291)
Q Consensus 557 ~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~ 636 (1291)
.+..|+.+ +
T Consensus 154 -----------i~~~l~~~-----------------------------------------~------------------- 162 (394)
T PRK12736 154 -----------VRELLSEY-----------------------------------------D------------------- 162 (394)
T ss_pred -----------HHHHHHHh-----------------------------------------C-------------------
Confidence 11111100 0
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchh---hhhhhchhHHHHH
Q psy15088 637 MADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKN---LVKRFNAEKSLVE 713 (1291)
Q Consensus 637 l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~---~~~~~~g~~~LLD 713 (1291)
+.....|++..|+..+ ...|+.+...|++
T Consensus 163 ------------------------------------------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~ 194 (394)
T PRK12736 163 ------------------------------------------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMD 194 (394)
T ss_pred ------------------------------------------------CCcCCccEEEeeccccccCCCcchhhHHHHHH
Confidence 0111235555555543 1234456788999
Q ss_pred HHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCe
Q psy15088 714 MCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRL 793 (1291)
Q Consensus 714 ~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl 793 (1291)
.+..++|.|.. +.++|+
T Consensus 195 ~l~~~lp~~~~---------------------------------------------------------------~~~~p~ 211 (394)
T PRK12736 195 AVDEYIPTPER---------------------------------------------------------------DTDKPF 211 (394)
T ss_pred HHHHhCCCCCC---------------------------------------------------------------CCCCCe
Confidence 99999987631 123589
Q ss_pred EEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEE--
Q psy15088 794 MVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI-- 871 (1291)
Q Consensus 794 ~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I-- 871 (1291)
.++|.+++..++.|. +++|||++|+|+.||+|++++++ .....+|++|.. ...++++|.|||++++
T Consensus 212 r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~p~~-------~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l 279 (394)
T PRK12736 212 LMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIVGIK-------ETQKTVVTGVEM----FRKLLDEGQAGDNVGVLL 279 (394)
T ss_pred EEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEecCC-------CCeEEEEEEEEE----CCEEccEECCCCEEEEEE
Confidence 999999999988765 89999999999999999998742 134578888874 3568899999999966
Q ss_pred ccCCC-cccccceeec
Q psy15088 872 EGIDQ-PIVKTSTITD 886 (1291)
Q Consensus 872 ~Gl~~-~~~k~~Tl~~ 886 (1291)
.|++. .+.++..+++
T Consensus 280 ~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 280 RGVDRDEVERGQVLAK 295 (394)
T ss_pred CCCcHHhCCcceEEec
Confidence 77753 2444556655
No 44
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.91 E-value=1.4e-24 Score=246.56 Aligned_cols=260 Identities=22% Similarity=0.273 Sum_probs=196.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+|+||+|+|||||+++|++..+.+.+.+.+..+.+++|+.++|++||+|+.+....+.| +++.++++|||||.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-----~~~~i~liDtPG~~ 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-----KGHKINLIDTPGYA 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-----CCEEEEEEECcCHH
Confidence 7999999999999999999999888777777778889999999999999999999999999 78999999999997
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHM 559 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l 559 (1291)
.+. ...++..+|.+++|+|+..+...++.++++.+...++|+++ |+| | +|....+.+..+..+.+.+|..
T Consensus 76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~ii--vvN----K-~D~~~~~~~~~~~~l~~~~~~~- 147 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRII--FIN----K-MDRERADFDKTLAALQEAFGRP- 147 (268)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEE----C-CccCCCCHHHHHHHHHHHhCCC-
Confidence 543 55566778999999999999999999999998888999886 777 5 6655444433444444444321
Q ss_pred ChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc---eeecCCCCcc-CccchHHH
Q psy15088 560 NKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK---FLIDGFPRNQ-NNLDGWNK 635 (1291)
Q Consensus 560 ~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~---~liDGfPr~~-~qa~~~~~ 635 (1291)
. -+.++|++++..| .+++|++.++.+.+.. +...+.|... ..+..++.
T Consensus 148 ----------~--------~~~~ip~~~~~~~----------~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 199 (268)
T cd04170 148 ----------V--------VPLQLPIGEGDDF----------KGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEARE 199 (268)
T ss_pred ----------e--------EEEEecccCCCce----------eEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHH
Confidence 0 1246787776655 4688999887664321 1122233221 12344555
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhchhHHHHH
Q psy15088 636 EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713 (1291)
Q Consensus 636 ~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD 713 (1291)
.+.+.+. + .++.+++++++.+ +.++++|.+.+ .+.++.+.||+|+|+.++ .|++.|+|
T Consensus 200 ~l~e~~a-------~-~dd~l~e~yl~~~-------~~~~~~l~~~l~~~~~~~~~~pv~~gSa~~~-----~G~~~ll~ 259 (268)
T cd04170 200 ELLEAVA-------E-TDDELMEKYLEGG-------ELTEEELHAGLRRALRAGLLVPVLCGSALTN-----IGVRELLD 259 (268)
T ss_pred HHHHHHh-------h-CCHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhCCEEEEEEeeCCCC-----cCHHHHHH
Confidence 5544332 2 3567888888753 47788888877 557799999999999999 99999999
Q ss_pred HHHhhCCCC
Q psy15088 714 MCVKHIPSP 722 (1291)
Q Consensus 714 ~Iv~~lPsP 722 (1291)
++++++|+|
T Consensus 260 ~~~~~~p~p 268 (268)
T cd04170 260 ALVHLLPSP 268 (268)
T ss_pred HHHHhCCCC
Confidence 999999998
No 45
>KOG0460|consensus
Probab=99.91 E-value=7.7e-25 Score=237.89 Aligned_cols=264 Identities=21% Similarity=0.305 Sum_probs=195.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+-|||+|||||||+-++..-... ...++.....-.|.-++|+.|||||.++.+.++ +..++|..+|||||+
T Consensus 56 NVGTIGHVDHGKTTLTaAITkila~--~g~A~~~kydeID~APEEkaRGITIn~aHveYe-----Ta~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKILAE--KGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-----TAKRHYAHTDCPGHA 128 (449)
T ss_pred cccccccccCCchhHHHHHHHHHHh--ccccccccHhhhhcChhhhhccceEeeeeeeee-----ccccccccCCCCchH
Confidence 9999999999999999998654321 223334445567999999999999999877544 489999999999999
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHM 559 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~l 559 (1291)
++. ++.+..+.|++|+|+.|.+|..|||++|+-.+...|++++ |.||| | .|.+ + ++.+-++++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~i-vvfiN----K-vD~V-~--d~e~leLVE------ 193 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHI-VVFIN----K-VDLV-D--DPEMLELVE------ 193 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceE-EEEEe----c-cccc-C--CHHHHHHHH------
Confidence 886 8999999999999999999999999999999999999997 68998 6 2322 1 222222221
Q ss_pred ChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHHHH
Q psy15088 560 NKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMAD 639 (1291)
Q Consensus 560 ~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l~e 639 (1291)
...|.+|.. |
T Consensus 194 ------mE~RElLse-------------------------------------------~--------------------- 203 (449)
T KOG0460|consen 194 ------MEIRELLSE-------------------------------------------F--------------------- 203 (449)
T ss_pred ------HHHHHHHHH-------------------------------------------c---------------------
Confidence 112222210 0
Q ss_pred HHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhh-----hhchhHHHHHH
Q psy15088 640 KVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVK-----RFNAEKSLVEM 714 (1291)
Q Consensus 640 ~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~-----~~~g~~~LLD~ 714 (1291)
-|++...||++||++..+-- -.+.+..|||+
T Consensus 204 --------------------------------------------gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLlda 239 (449)
T KOG0460|consen 204 --------------------------------------------GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDA 239 (449)
T ss_pred --------------------------------------------CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHH
Confidence 13455678888876643211 12457889999
Q ss_pred HHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeE
Q psy15088 715 CVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLM 794 (1291)
Q Consensus 715 Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~ 794 (1291)
+-.|+|-|.- +-+.|++
T Consensus 240 vDsyip~P~R---------------------------------------------------------------~~~~pFl 256 (449)
T KOG0460|consen 240 VDSYIPTPER---------------------------------------------------------------DLDKPFL 256 (449)
T ss_pred HhccCCCccc---------------------------------------------------------------ccCCCce
Confidence 9999999952 1235888
Q ss_pred EEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEE--c
Q psy15088 795 VHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI--E 872 (1291)
Q Consensus 795 ~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I--~ 872 (1291)
+.|-.++..++.|. ++.||+..|+|++|+++-++|-+. ....+|..+.++ ...+++|.|||.+++ +
T Consensus 257 ~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eivG~~~-------~lkttvtgiemF----~K~ld~a~AGDn~G~LlR 324 (449)
T KOG0460|consen 257 LPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIVGHNK-------TLKTTVTGIEMF----RKSLDEAQAGDNLGALLR 324 (449)
T ss_pred eehhheeeecCCce-EEEEEEeecccccCCEEEEeccCc-------ceeeEeehHHHH----HHHHHhcccccceehhhh
Confidence 88888888888776 999999999999999999998432 244566655432 456899999999976 6
Q ss_pred cCCC
Q psy15088 873 GIDQ 876 (1291)
Q Consensus 873 Gl~~ 876 (1291)
|++.
T Consensus 325 Gik~ 328 (449)
T KOG0460|consen 325 GIKR 328 (449)
T ss_pred cCCH
Confidence 7754
No 46
>PLN03126 Elongation factor Tu; Provisional
Probab=99.91 E-value=1.3e-23 Score=253.56 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=116.5
Q ss_pred cchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc
Q psy15088 385 YNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD 464 (1291)
Q Consensus 385 ~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 464 (1291)
+.+..+.+.++.....+||+++||+|||||||+++|++..+.+.. ....+..++|..++|++||+|+++....|.+
T Consensus 66 ~~~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-- 141 (478)
T PLN03126 66 FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYET-- 141 (478)
T ss_pred hhHHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEec--
Confidence 455666666666677899999999999999999999998876532 2234556899999999999999999888887
Q ss_pred cCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 465 VKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 465 ~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|||||||..+. ++.++..+|++++|+|+..|+.+||++++..+...|+|+++ .++|
T Consensus 142 ---~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iI-vvvN 205 (478)
T PLN03126 142 ---ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMV-VFLN 205 (478)
T ss_pred ---CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE-EEEe
Confidence 78899999999998664 67777788999999999999999999999999999998652 3666
No 47
>PRK12735 elongation factor Tu; Reviewed
Probab=99.91 E-value=1.9e-23 Score=249.38 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=101.4
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
....||+|+||+|||||||+++|++...... .......+.+|..++|++||+|++++...+.+ ++..|+|+||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g--~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-----~~~~i~~iDt 82 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKG--GGEAKAYDQIDNAPEEKARGITINTSHVEYET-----ANRHYAHVDC 82 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcC--CcccchhhhccCChhHHhcCceEEEeeeEEcC-----CCcEEEEEEC
Confidence 3457999999999999999999997543210 11111235799999999999999998877766 7889999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||..+. +..++..+|++++|+|+..|+.+|+++++..+...|+|.++ .++|
T Consensus 83 PGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~ii-vvvN 136 (396)
T PRK12735 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV-VFLN 136 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEEE
Confidence 9997654 66777789999999999999999999999999989998863 2566
No 48
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.91 E-value=1e-23 Score=253.90 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=106.2
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCC---------ccccc----cccccccccccccCceeeeccceecccccC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP---------AEEKN----LRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~---------~~~~~----~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
..||+++||+|||||||+++|++..+.+...+ ....+ ++++|..++|++||+|++.+...|.|
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~---- 82 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc----
Confidence 35999999999999999999999988765432 11122 24799999999999999999888888
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCcc-------chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW-------DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~-------~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.|+|||||||.+|. ++.++..+|++++|+|+..|+ ++||++++..+...|+|+++ .+||
T Consensus 83 -~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~ii-v~vN 153 (446)
T PTZ00141 83 -PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMI-VCIN 153 (446)
T ss_pred -CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEE-EEEE
Confidence 89999999999998765 777788999999999999985 58999999999999999863 3676
No 49
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=1.4e-23 Score=250.69 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=101.8
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCcc-ccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAE-EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~-~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
....+||||+||+|||||||+++|++..... +.. ....+++|.+++|++||+|++++.+.|.+ +++.++|+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~---g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-----~~~~~~li 80 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKE---GGAAARAYDQIDNAPEEKARGITINTAHVEYET-----ENRHYAHV 80 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHh---hcccccccccccCCHHHHhcCcceeeEEEEEcC-----CCEEEEEE
Confidence 3445799999999999999999998653211 111 12245799999999999999998887766 78899999
Q ss_pred eCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 476 DTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 476 DTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||||..+. ++.++..+|++++|+|+..|+.+||++++..+...++|+++ .++|
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iI-vvvN 136 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIV-VFLN 136 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEE-EEEE
Confidence 999997654 66677788999999999999999999999999999998863 2456
No 50
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.90 E-value=1.8e-23 Score=251.50 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=105.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCc-------ccc------ccccccccccccccCceeeeccceecccccC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------EEK------NLRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------~~~------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
-+||+++||+|||||||+++|++.++.+..... ... -++++|..++|++||+||+.+...|.|
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~---- 82 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC----
Confidence 369999999999999999999999987654320 011 156899999999999999999888887
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-cc------hhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-WD------IHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-~~------~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|||||||.+|. ++.++..+|++|+|+|+..| ++ +||++++..+...|+|+++ .++|
T Consensus 83 -~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI-V~vN 153 (447)
T PLN00043 83 -TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI-CCCN 153 (447)
T ss_pred -CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE-EEEE
Confidence 89999999999998775 67778899999999999987 43 8999999999999998853 4677
No 51
>PRK00049 elongation factor Tu; Reviewed
Probab=99.90 E-value=4.9e-23 Score=245.61 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=101.2
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
...+||+|+||+|||||||+++|++...... .........+|..++|++||+|++++.+.+.+ +++.|+||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g--~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-----~~~~i~~iDt 82 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKG--GAEAKAYDQIDKAPEEKARGITINTAHVEYET-----EKRHYAHVDC 82 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhcc--CCcccchhhccCChHHHhcCeEEeeeEEEEcC-----CCeEEEEEEC
Confidence 3457999999999999999999997542211 01112234799999999999999999887766 7889999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||..+. +..++..+|++++|+|+..|+.+||++++..+...++|.++ .++|
T Consensus 83 PG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~ii-VvvN 136 (396)
T PRK00049 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV-VFLN 136 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEE-EEEe
Confidence 9997554 56677789999999999999999999999999999988753 2566
No 52
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1e-23 Score=260.93 Aligned_cols=147 Identities=25% Similarity=0.454 Sum_probs=126.0
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCccee-----e
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF-----A 74 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~-----~ 74 (1291)
|.+||++|+++|||+.+++ +|||||+|+||||||||+|+++|++.| |||+++|+|+|+|||||...+. ... +
T Consensus 422 l~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~-~Vev~~~~PqV~YrETi~~~~~-~~~~~~kqs 499 (697)
T COG0480 422 LSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF-GVEVEVGKPQVAYRETIRKKSE-VEGKHKKQS 499 (697)
T ss_pred HHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc-CceEEecCCeeEEEEeeccccc-ceeeeeecc
Confidence 6799999999999999999 999999999999999999999999988 9999999999999999999877 444 5
Q ss_pred eeCCCCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccc
Q psy15088 75 ETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDK 154 (1291)
Q Consensus 75 ~s~n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~ 154 (1291)
..+|.++++++++||++++. + +.|.+...+ .
T Consensus 500 gg~~q~~~v~i~~EP~~~~~------~---------------------------------------~~f~~~i~~----g 530 (697)
T COG0480 500 GGPGQYGHVYIEIEPLEDGS------G---------------------------------------FEFVDKIVG----G 530 (697)
T ss_pred CCCCcccEEEEEEEeCCCCc------c---------------------------------------eEEEeeccc----C
Confidence 57889999999999999874 0 112222111 0
Q ss_pred cchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCC
Q psy15088 155 GLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSP 198 (1291)
Q Consensus 155 ~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~a 198 (1291)
..+++|.+++..||+||+++|||++||++++++.|.|+.+|...
T Consensus 531 ~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd 574 (697)
T COG0480 531 VVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD 574 (697)
T ss_pred cCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCC
Confidence 12346777888899999999999999999999999999999983
No 53
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=3.8e-23 Score=251.11 Aligned_cols=242 Identities=15% Similarity=0.127 Sum_probs=176.5
Q ss_pred CCCccccccCCCceeeecCceeEEecCCCcc--------ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC
Q psy15088 196 SSPSIYCSNKSHSWEIVCTRNNNKCLPPGHV--------NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK 267 (1291)
Q Consensus 196 t~as~~~~~~~~~~~ii~~~~~~liDtpG~~--------~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~ 267 (1291)
..++.|++.......+ +++.|+++||||+. .+..++..+++.||++|||+|++.|+++.++++++++++.+
T Consensus 29 ~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~ 107 (429)
T TIGR03594 29 DTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107 (429)
T ss_pred CCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 3445556555544443 27789999999983 35567888999999999999999999999999999999999
Q ss_pred CcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 268 MAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 268 ~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
+|+++|+||+|....+. ...++ ..+|+.+ .++.||.|+.|.+
T Consensus 108 ~piilVvNK~D~~~~~~--~~~~~---------------~~lg~~~---------------------~~~vSa~~g~gv~ 149 (429)
T TIGR03594 108 KPVILVANKIDGKKEDA--VAAEF---------------YSLGFGE---------------------PIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEECccCCcccc--cHHHH---------------HhcCCCC---------------------eEEEeCCcCCChH
Confidence 99999999999864221 11122 2245422 1678999988764
Q ss_pred ccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCc
Q psy15088 348 VETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPG 427 (1291)
Q Consensus 348 ~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i 427 (1291)
++.+.+...+..... . ....+...+|+++|++|+|||||+++|++..+.+
T Consensus 150 -----------~ll~~i~~~l~~~~~------------~-------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~ 199 (429)
T TIGR03594 150 -----------DLLDAILELLPEEEE------------E-------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI 199 (429)
T ss_pred -----------HHHHHHHHhcCcccc------------c-------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeee
Confidence 222222221110000 0 0011234589999999999999999999887655
Q ss_pred ccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcccc-------------cccccccccce
Q psy15088 428 YRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVT-------------LLLPDVKGKNY 494 (1291)
Q Consensus 428 ~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~-------------~~l~~~~~ad~ 494 (1291)
+...+ |+|+++....+.+ ++..+.++||||+... +++..+..+|+
T Consensus 200 ~~~~~-----------------gtt~~~~~~~~~~-----~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 200 VSDIA-----------------GTTRDSIDIPFER-----NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred cCCCC-----------------CceECcEeEEEEE-----CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 54433 9999988877777 6779999999997321 24556778999
Q ss_pred EEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 495 LMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 495 ~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+|+|+|+..+++.|+.++++.+...++|.++ ++|
T Consensus 258 ~ilV~D~~~~~~~~~~~~~~~~~~~~~~iii--v~N 291 (429)
T TIGR03594 258 VLLVLDATEGITEQDLRIAGLILEAGKALVI--VVN 291 (429)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCcEEE--EEE
Confidence 9999999999999999999998888888775 666
No 54
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.6e-23 Score=252.81 Aligned_cols=239 Identities=16% Similarity=0.142 Sum_probs=173.8
Q ss_pred CccccccCCCceeeecCceeEEecCCCccc--------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc
Q psy15088 198 PSIYCSNKSHSWEIVCTRNNNKCLPPGHVN--------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA 269 (1291)
Q Consensus 198 as~~~~~~~~~~~ii~~~~~~liDtpG~~~--------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~ 269 (1291)
++.|++.......+- +..|.++||||+.+ +..++..+++.||++|||||+.+|.+..+.++++++++.++|
T Consensus 33 ~~~t~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p 111 (435)
T PRK00093 33 PGVTRDRIYGEAEWL-GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP 111 (435)
T ss_pred CCCcccceEEEEEEC-CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 344555544444432 67899999999987 344567889999999999999999999999999999999999
Q ss_pred EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCcc
Q psy15088 270 ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVE 349 (1291)
Q Consensus 270 ~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e 349 (1291)
+++|+||+|....+ ....++ ..+|+.+ .++.||.++.|.+
T Consensus 112 iilv~NK~D~~~~~--~~~~~~---------------~~lg~~~---------------------~~~iSa~~g~gv~-- 151 (435)
T PRK00093 112 VILVVNKVDGPDEE--ADAYEF---------------YSLGLGE---------------------PYPISAEHGRGIG-- 151 (435)
T ss_pred EEEEEECccCccch--hhHHHH---------------HhcCCCC---------------------CEEEEeeCCCCHH--
Confidence 99999999965311 001111 1244321 1667999887764
Q ss_pred ccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCccc
Q psy15088 350 TVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYR 429 (1291)
Q Consensus 350 ~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~ 429 (1291)
++.+.++....... .........+|+|+|++|+|||||+++|++..+.++.
T Consensus 152 ---------~l~~~I~~~~~~~~--------------------~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~ 202 (435)
T PRK00093 152 ---------DLLDAILEELPEEE--------------------EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVS 202 (435)
T ss_pred ---------HHHHHHHhhCCccc--------------------cccccccceEEEEECCCCCCHHHHHHHHhCCCceeec
Confidence 22222222100000 0000122459999999999999999999988766654
Q ss_pred CCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccc-------------ccccccccccceEE
Q psy15088 430 QPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV-------------TLLLPDVKGKNYLM 496 (1291)
Q Consensus 430 ~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~-------------~~~l~~~~~ad~~v 496 (1291)
..+ |+|+++....+.+ ++..++++||||+.. .+++..+..+|++|
T Consensus 203 ~~~-----------------gtt~~~~~~~~~~-----~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 260 (435)
T PRK00093 203 DIA-----------------GTTRDSIDTPFER-----DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 (435)
T ss_pred CCC-----------------CceEEEEEEEEEE-----CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEE
Confidence 443 9999998887777 788999999999731 23556777899999
Q ss_pred EEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 497 NIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 497 ~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+|+|+..+++.|+.+++..+...++|.++ ++|
T Consensus 261 lViD~~~~~~~~~~~i~~~~~~~~~~~iv--v~N 292 (435)
T PRK00093 261 LVIDATEGITEQDLRIAGLALEAGRALVI--VVN 292 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCcEEE--EEE
Confidence 99999999999999999999888888776 566
No 55
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.7e-23 Score=223.54 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=104.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+.|||+|||||||+-++....... ..+........|..++|++|||||..+.+.++. .+++|..+|+|||.
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~--~~~~~~~y~~id~aPeEk~rGITIntahveyet-----~~rhyahVDcPGHa 86 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKK--GGAEAKAYDQIDNAPEEKARGITINTAHVEYET-----ANRHYAHVDCPGHA 86 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHHhh--ccccccchhhhccCchHhhcCceeccceeEEec-----CCceEEeccCCChH
Confidence 99999999999999999997664321 123334444568899999999999999876655 89999999999999
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
++. ++.++.++|++|+|+.|.+|..|||+.|.-.+...|.|.+ |.|+|
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~i-vvfln 136 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYI-VVFLN 136 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEE-EEEEe
Confidence 876 8999999999999999999999999999999999999997 57887
No 56
>PLN03127 Elongation factor Tu; Provisional
Probab=99.88 E-value=3.1e-22 Score=240.64 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=99.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCcc-ccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAE-EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~-~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
...+||+|+||+|||||||+++|.+.... .+.. ......+|..++|++||+|++++...|.+ +++.|+|||
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-----AKRHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHH---hhcccceeeccccCChhHhhcCceeeeeEEEEcC-----CCeEEEEEE
Confidence 34579999999999999999999754211 0111 11122699999999999999999888877 788999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||||..+. ++.++..+|++++|+|+..|+.+||++++..+...|+|+++ .++|
T Consensus 131 tPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iI-vviN 185 (447)
T PLN03127 131 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLV-VFLN 185 (447)
T ss_pred CCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEEE
Confidence 99997654 55666789999999999999999999999999999998753 2566
No 57
>PRK12739 elongation factor G; Reviewed
Probab=99.88 E-value=1e-22 Score=258.96 Aligned_cols=147 Identities=21% Similarity=0.366 Sum_probs=120.4
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeC--
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETP-- 77 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~-- 77 (1291)
|.+||++|+++||+++|+. +||||++|+|+||||||+|++||+++| ++++++|+|.|+|||||.+.+......+..
T Consensus 421 L~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~ 499 (691)
T PRK12739 421 MGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETITKSVEAEGKYKKQSG 499 (691)
T ss_pred HHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh-CCeeEecCCEEEEeeccCCcccccceeccccC
Confidence 5799999999999999999 689999999999999999999999999 899999999999999999876532222111
Q ss_pred --CCCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 78 --NKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 78 --n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
+.+++++++++|++.+ ..+.|+|.+.+ ..
T Consensus 500 g~~~~~~v~l~~~P~~~~---------------------------------------------~~~~~~~~i~~----g~ 530 (691)
T PRK12739 500 GRGQYGDVWIEFEPNEEG---------------------------------------------KGFEFVNKIVG----GV 530 (691)
T ss_pred CCCceeEEEEEEEECCCC---------------------------------------------CCcEEEEeccC----Cc
Confidence 1124555555554432 13667776543 33
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
++++|+++|.+||+||+++||||+||++||+|.|.|+.+|..
T Consensus 531 ~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~ 572 (691)
T PRK12739 531 IPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDV 572 (691)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCC
Confidence 568999999999999999999999999999999999999976
No 58
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=6.1e-22 Score=239.45 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=105.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCC------------cc-ccccccccccccccccCceeeeccceecccccC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP------------AE-EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~------------~~-~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
..||+|+||+|||||||+++|++..+.+.... .. ...++++|+.++|++||+|++.....|.+
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~---- 81 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET---- 81 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec----
Confidence 36999999999999999999999999876431 11 23356899999999999999999999988
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCC--ccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPG--MWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~--g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. ++.++..+|++++|+|+.. ++.+|++.++..+...+++++ +.++|
T Consensus 82 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~i-ivviN 147 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQL-IVAIN 147 (425)
T ss_pred -CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeE-EEEEE
Confidence 78999999999998654 4666778999999999998 899999999988888887654 33666
No 59
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=3.3e-21 Score=242.48 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=221.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
.|..+|+|+||+|||||||+++|.... .. ....+|+|++....++.| +++.++|+||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~----------------~~e~~GIT~~iga~~v~~-----~~~~ItfiDT 344 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VA----------------AGEAGGITQHIGAYQVET-----NGGKITFLDT 344 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cc----------------ccccCceeeeccEEEEEE-----CCEEEEEEEC
Confidence 466799999999999999999996432 11 112469999888888888 6789999999
Q ss_pred CCccccccc--ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHh
Q psy15088 478 PASPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 478 pGh~~~~~l--~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|||..|..+ +.+..+|++|+|+|+..|+.+||+.++..+...++|.++ ++| | +|....+ ...+...+
T Consensus 345 PGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIV--viN----K-iDl~~a~----~e~V~~eL 413 (787)
T PRK05306 345 PGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIV--AIN----K-IDKPGAN----PDRVKQEL 413 (787)
T ss_pred CCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEE--EEE----C-ccccccC----HHHHHHHH
Confidence 999866533 346678999999999999999999999999889999665 777 5 4532111 11111111
Q ss_pred CCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHH
Q psy15088 556 GIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNK 635 (1291)
Q Consensus 556 g~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~ 635 (1291)
.. .+++ |
T Consensus 414 --------------------~~--------------------------------------~~~~----~----------- 420 (787)
T PRK05306 414 --------------------SE--------------------------------------YGLV----P----------- 420 (787)
T ss_pred --------------------HH--------------------------------------hccc----H-----------
Confidence 00 0000 0
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHH
Q psy15088 636 EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMC 715 (1291)
Q Consensus 636 ~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~I 715 (1291)
+ ......|+++.|+..+ .|+..|++.+
T Consensus 421 -----------------e-------------------------------~~g~~vp~vpvSAktG-----~GI~eLle~I 447 (787)
T PRK05306 421 -----------------E-------------------------------EWGGDTIFVPVSAKTG-----EGIDELLEAI 447 (787)
T ss_pred -----------------H-------------------------------HhCCCceEEEEeCCCC-----CCchHHHHhh
Confidence 0 0012257888899999 8999999988
Q ss_pred HhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEE
Q psy15088 716 VKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMV 795 (1291)
Q Consensus 716 v~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~ 795 (1291)
.... +.. . ..+++++|+.+
T Consensus 448 ~~~~----e~~----~-----------------------------------------------------l~~~~~~~~~g 466 (787)
T PRK05306 448 LLQA----EVL----E-----------------------------------------------------LKANPDRPARG 466 (787)
T ss_pred hhhh----hhh----h-----------------------------------------------------cccCCCCCcEE
Confidence 6410 000 0 01345678899
Q ss_pred EEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCC
Q psy15088 796 HSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGID 875 (1291)
Q Consensus 796 ~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~ 875 (1291)
+|++.+.+++.|. ++++||++|+|+.||.|.+ ++ +.++++.|.+....++++|.||++|.|.||+
T Consensus 467 ~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~-g~-------------~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~ 531 (787)
T PRK05306 467 TVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVA-GT-------------TYGRVRAMVDDNGKRVKEAGPSTPVEILGLS 531 (787)
T ss_pred EEEEEEEcCCCeE-EEEEEEecCeEecCCEEEE-CC-------------cEEEEEEEECCCCCCCCEEcCCCeEEEeCCC
Confidence 9999999888765 9999999999999999986 22 2456667777778899999999999999998
Q ss_pred CcccccceeeccccCC---------------------ccccccCCC----CCCCceEEEEEEeCCCCChhHHHHHHHHHH
Q psy15088 876 QPIVKTSTITDLITNE---------------------DMYIFRPLK----FNTQSVIKIAVEPVNPSELPKMLDGLRKVN 930 (1291)
Q Consensus 876 ~~~~k~~Tl~~~~~~~---------------------~~~~~~~~~----~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~ 930 (1291)
+.-.-++|++...++. ....+..+. ....+.+.+.|.+.....+..|..+|.+|.
T Consensus 532 ~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~ 611 (787)
T PRK05306 532 GVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLS 611 (787)
T ss_pred CCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhc
Confidence 7623367777432210 011122221 111236899999999999999999999999
Q ss_pred HhCCceeEEECcCCcEEEEecchhH
Q psy15088 931 KSYPLLTTKVEESGEHVVLGTGELY 955 (1291)
Q Consensus 931 ~~DPsl~v~~~etGe~ii~g~GELH 955 (1291)
.+++.+.+ +-+|.|.+.
T Consensus 612 ~~~v~~~i--------~~~~vG~it 628 (787)
T PRK05306 612 TDEVKVNI--------IHSGVGAIT 628 (787)
T ss_pred ccCCceEE--------EeeccCCCC
Confidence 99998876 345666653
No 60
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.87 E-value=9.5e-22 Score=235.34 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=105.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCc-------cccc--------cccccccccccccCceeeeccceecccccC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------EEKN--------LRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------~~~~--------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
||+|+||+|||||||+++|++.+|.+..... ...+ ++++|+.++|++||+|+++....|.|
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~---- 77 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST---- 77 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc----
Confidence 8999999999999999999999998765210 1112 45999999999999999999999988
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.|+|||||||..+. ++.++..+|++++|+|+..|+.+||++++..+...++++++ .++|
T Consensus 78 -~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~ii-vviN 141 (406)
T TIGR02034 78 -DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVV-LAVN 141 (406)
T ss_pred -CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEE-EEEE
Confidence 78999999999998654 56677899999999999999999999999999888887753 4676
No 61
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.2e-21 Score=239.47 Aligned_cols=225 Identities=17% Similarity=0.150 Sum_probs=164.6
Q ss_pred CceeEEecCCCccc--------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccC
Q psy15088 214 TRNNNKCLPPGHVN--------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELK 285 (1291)
Q Consensus 214 ~~~~~liDtpG~~~--------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~ 285 (1291)
++.|.++||||+.. +..++..+++.||++|||||+..|.+..+..+++++++.++|+++|+||+|+...+.
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~- 163 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA- 163 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-
Confidence 66899999999863 455677899999999999999999999999999999999999999999999863110
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCcccccccccccccccccc
Q psy15088 286 LPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLI 365 (1291)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i 365 (1291)
...+ +..+|+.. .+..||.||.|.+ ++.+.++
T Consensus 164 -~~~~---------------~~~~g~~~---------------------~~~iSA~~g~gi~-----------eL~~~i~ 195 (472)
T PRK03003 164 -DAAA---------------LWSLGLGE---------------------PHPVSALHGRGVG-----------DLLDAVL 195 (472)
T ss_pred -hhHH---------------HHhcCCCC---------------------eEEEEcCCCCCcH-----------HHHHHHH
Confidence 0011 11234321 1567999998875 3333333
Q ss_pred ccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCcccccccccccccc
Q psy15088 366 APIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFT 445 (1291)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~ 445 (1291)
..+.... +. -...+..++|+|+|++|+|||||+++|++..+.+++..+
T Consensus 196 ~~l~~~~-----~~--------------~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~------------- 243 (472)
T PRK03003 196 AALPEVP-----RV--------------GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA------------- 243 (472)
T ss_pred hhccccc-----cc--------------ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-------------
Confidence 2111000 00 001123579999999999999999999988765554444
Q ss_pred ccccCceeeeccceecccccCCCCeEEEEEeCCCcc----------ccc---ccccccccceEEEEecCCCccchhhHhh
Q psy15088 446 EQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP----------VTL---LLPDVKGKNYLMNIFDTPGMWDIHVRKF 512 (1291)
Q Consensus 446 E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~----------~~~---~l~~~~~ad~~v~vida~~g~~~qt~~~ 512 (1291)
|+|+++....+.+ ++..+.|+||||.. .+. +...+..||++|+|+|+..+++.|+.++
T Consensus 244 ----gtT~d~~~~~~~~-----~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~ 314 (472)
T PRK03003 244 ----GTTVDPVDSLIEL-----GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRV 314 (472)
T ss_pred ----CccCCcceEEEEE-----CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHH
Confidence 8999887777777 67889999999962 222 3345678899999999999999999998
Q ss_pred HHHHHhhcCccchhhhhh
Q psy15088 513 SKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 513 ~~~~~~~~~~~~fv~fil 530 (1291)
+..+...++|.++ ++|
T Consensus 315 ~~~~~~~~~piIi--V~N 330 (472)
T PRK03003 315 LSMVIEAGRALVL--AFN 330 (472)
T ss_pred HHHHHHcCCCEEE--EEE
Confidence 8888888888765 566
No 62
>PRK00007 elongation factor G; Reviewed
Probab=99.87 E-value=5.9e-22 Score=251.80 Aligned_cols=147 Identities=22% Similarity=0.370 Sum_probs=120.6
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceee-eeC-
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFA-ETP- 77 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~-~s~- 77 (1291)
|.+||++|+++||+++|.. +||||++|+|+||||||+|++||+++| ++++++|+|.|+|||||++.+...... +..
T Consensus 424 L~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~-~vev~~s~p~V~yrETi~~~~~~~~~~~~~~g 502 (693)
T PRK00007 424 MGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF-KVEANVGKPQVAYRETIRKKVEVEGKFVKQSG 502 (693)
T ss_pred HHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh-CCeeEecCCEEEEeecccCccccCcccccccC
Confidence 5789999999999999999 689999999999999999999999999 999999999999999999876532111 111
Q ss_pred -C-CCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 78 -N-KRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 78 -n-~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
+ .++.++++++|++.+. | +.|.+.+.+ ..
T Consensus 503 g~~~~~~v~l~~eP~~~~~--------------------------~-------------------~~f~~~i~~----g~ 533 (693)
T PRK00007 503 GRGQYGHVVIEFEPNEPGK--------------------------G-------------------YEFVNKIVG----GV 533 (693)
T ss_pred CCCceEEEEEEEEeCCCCC--------------------------C-------------------cEEeecccC----Cc
Confidence 1 1278888888876531 1 233333322 22
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
+.++|+++|.+||+||+.+||||+||++||+|.|.|+.+|..
T Consensus 534 ~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ 575 (693)
T PRK00007 534 IPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDV 575 (693)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCC
Confidence 457899999999999999999999999999999999999875
No 63
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.87 E-value=2.7e-21 Score=234.67 Aligned_cols=127 Identities=19% Similarity=0.175 Sum_probs=105.6
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------ccc--------cccccccccccccccCceeeeccceecc
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AEE--------KNLRYTDTLFTEQERGVSIKASPVTLLL 462 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~~--------~~~~~~D~~~~E~erGiTi~~~~~~~~~ 462 (1291)
....||+|+||+|||||||+++|++.+|.+.... +.. .-++++|++++|++||+||++....|.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 3457999999999999999999999999876521 000 1245899999999999999999888887
Q ss_pred cccCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 463 PDVKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 463 ~~~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|||||||..+. +..++..+|++++|+|+..|+.+||++++..+...+++++ +.++|
T Consensus 105 -----~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~i-IvvvN 168 (474)
T PRK05124 105 -----EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHL-VVAVN 168 (474)
T ss_pred -----CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCce-EEEEE
Confidence 78899999999997653 5566788999999999999999999999998888887664 34666
No 64
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.4e-21 Score=249.33 Aligned_cols=243 Identities=19% Similarity=0.188 Sum_probs=173.6
Q ss_pred CCccccccCCCceeeecCceeEEecCCCccc--------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC
Q psy15088 197 SPSIYCSNKSHSWEIVCTRNNNKCLPPGHVN--------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM 268 (1291)
Q Consensus 197 ~as~~~~~~~~~~~ii~~~~~~liDtpG~~~--------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~ 268 (1291)
.+++|++......++ +++.|+++||||+.. +..++..+++.||++|||||+.+|+++.++.+++++++.++
T Consensus 306 ~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~ 384 (712)
T PRK09518 306 TPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGK 384 (712)
T ss_pred CCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344555444433332 267899999999763 55677889999999999999999999999999999999999
Q ss_pred cEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCc
Q psy15088 269 AITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDV 348 (1291)
Q Consensus 269 ~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~ 348 (1291)
|+|+|+||+|....+ ....++ ..+|+.. .+++||.||.|.+
T Consensus 385 pvIlV~NK~D~~~~~--~~~~~~---------------~~lg~~~---------------------~~~iSA~~g~GI~- 425 (712)
T PRK09518 385 PVVLAVNKIDDQASE--YDAAEF---------------WKLGLGE---------------------PYPISAMHGRGVG- 425 (712)
T ss_pred CEEEEEECcccccch--hhHHHH---------------HHcCCCC---------------------eEEEECCCCCCch-
Confidence 999999999985311 000111 1234321 1678999998875
Q ss_pred cccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcc
Q psy15088 349 ETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGY 428 (1291)
Q Consensus 349 e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~ 428 (1291)
++.+.++..+.... .. .-.-.++..++|+|+|++|+|||||+++|++..+.++
T Consensus 426 ----------eLl~~i~~~l~~~~------------~~-----~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v 478 (712)
T PRK09518 426 ----------DLLDEALDSLKVAE------------KT-----SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVV 478 (712)
T ss_pred ----------HHHHHHHHhccccc------------cc-----ccccCCCCCcEEEEECCCCCCHHHHHHHHhCcccccc
Confidence 33333332111100 00 0000123457999999999999999999998876555
Q ss_pred cCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc----------cc---cccccccccceE
Q psy15088 429 RQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP----------VT---LLLPDVKGKNYL 495 (1291)
Q Consensus 429 ~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~----------~~---~~l~~~~~ad~~ 495 (1291)
+..+ |+|+++....+.+ ++..+.|+||||+. .+ +++.++..+|++
T Consensus 479 ~~~~-----------------gtT~d~~~~~~~~-----~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advv 536 (712)
T PRK09518 479 NDLA-----------------GTTRDPVDEIVEI-----DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELA 536 (712)
T ss_pred CCCC-----------------CCCcCcceeEEEE-----CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEE
Confidence 4444 8999888777777 67789999999962 11 234456789999
Q ss_pred EEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 496 MNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 496 v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
++|+|+..+++.|+.+++..+...++|.++ ++|
T Consensus 537 ilViDat~~~s~~~~~i~~~~~~~~~piIi--V~N 569 (712)
T PRK09518 537 LFLFDASQPISEQDLKVMSMAVDAGRALVL--VFN 569 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 999999999999999999888888888876 666
No 65
>PRK13351 elongation factor G; Reviewed
Probab=99.86 E-value=1.3e-21 Score=249.93 Aligned_cols=148 Identities=22% Similarity=0.432 Sum_probs=123.8
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeee-eCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAE-TPN 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~-s~n 78 (1291)
|.+||++|.++||++++.. +||||++|+|+||||||+|++||+++| ++++++|+|.|+|||||++.+......+ ...
T Consensus 420 L~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~-~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~ 498 (687)
T PRK13351 420 LAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF-KLEVNTGKPQVAYRETIRKMAEGVYRHKKQFG 498 (687)
T ss_pred HHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh-CCceEecCCeEEEEeeccccccccceeeeccC
Confidence 5789999999999999998 689999999999999999999999999 8999999999999999998765433222 222
Q ss_pred C---CeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 79 K---RNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 79 ~---~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
+ +++++++++|++.+ .| |+|.+.+.+ ..
T Consensus 499 ~~~~~~~v~~~~ep~~~~--------------------------------------------~g-~~~~~~~~~----~~ 529 (687)
T PRK13351 499 GKGQFGEVHLRVEPLERG--------------------------------------------AG-FIFVSKVVG----GA 529 (687)
T ss_pred CCceEEEEEEEEEECCCC--------------------------------------------CC-cEEeecccC----Cc
Confidence 2 37999999998743 01 444444322 23
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSP 198 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~a 198 (1291)
+.++|+++|.+||+||+++||||+||++||+|.|.|+.+|...
T Consensus 530 ~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~ 572 (687)
T PRK13351 530 IPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVD 572 (687)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCC
Confidence 4678999999999999999999999999999999999999873
No 66
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.85 E-value=1.9e-21 Score=247.65 Aligned_cols=146 Identities=22% Similarity=0.397 Sum_probs=119.7
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCC-
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPN- 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n- 78 (1291)
|.+||++|.++||+++|+. +||||++|+|+||||||+|++||+++| ++++++|+|.|+|||||++.+......+...
T Consensus 422 L~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~-~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~ 500 (689)
T TIGR00484 422 MGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETIRSKVEVEGKHAKQSG 500 (689)
T ss_pred HHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh-CCeeEecCCEEEEeecccCccccccccccccC
Confidence 5789999999999999999 689999999999999999999999999 8999999999999999998765322222111
Q ss_pred ---CCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 79 ---KRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 79 ---~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
.+++++++++|++.+ ||. |.+...+ ..
T Consensus 501 ~~~~~~~v~l~~eP~~~~---------------------------g~~-------------------~~~~i~~----g~ 530 (689)
T TIGR00484 501 GRGQYGHVKIRFEPLEPK---------------------------GYE-------------------FVNEIKG----GV 530 (689)
T ss_pred CCCceEEEEEEEEECCCC---------------------------CcE-------------------EEEeccC----Cc
Confidence 247999999998762 121 1111111 11
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
..++|+++|.+||+||+.+||||+||++||+|.|.|+.+|..
T Consensus 531 ~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~ 572 (689)
T TIGR00484 531 IPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDV 572 (689)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCC
Confidence 246899999999999999999999999999999999999976
No 67
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=9.1e-21 Score=229.21 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=102.1
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------ccccc------cccccccccccccCceeeeccceecccc
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AEEKN------LRYTDTLFTEQERGVSIKASPVTLLLPD 464 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~ 464 (1291)
...+||+|+||+|||||||+++|++..+.+.... +...+ .+++|..++|++||+|++.....|.+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-- 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-- 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--
Confidence 4457999999999999999999999988765321 11111 45899999999999999999998888
Q ss_pred cCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc---cchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 465 VKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM---WDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 465 ~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g---~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. ++..+..+|++++|+|+..+ ..+|++.++..+...+.++++ .++|
T Consensus 83 ---~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iI-VviN 149 (426)
T TIGR00483 83 ---DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLI-VAIN 149 (426)
T ss_pred ---CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEE-EEEE
Confidence 78999999999997654 55566789999999999998 778888887777667766543 3566
No 68
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.85 E-value=3.4e-21 Score=210.98 Aligned_cols=126 Identities=23% Similarity=0.368 Sum_probs=108.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc-----CCCCeEEEEE
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV-----KGKNYLMNIF 475 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-----~~~~~~~~li 475 (1291)
|||||+||+|||||||+++|+..+|.+.... .+..++||++++|++||+||+++.+++.|... +++++.++|+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 7999999999999999999999988654332 45678999999999999999999999988532 2458999999
Q ss_pred eCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 476 DTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 476 DTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||||..+. +..++..+|++++|+|+..|+..|++++++.+...++|.++ ++|
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~il--viN 133 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVL--VIN 133 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 999998765 55666788999999999999999999999999888888665 776
No 69
>KOG0458|consensus
Probab=99.84 E-value=2.6e-20 Score=217.38 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=120.2
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCc-------c------ccccccccccccccccCceeeeccceeccc
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------E------EKNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------~------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
|..-.|.+++||+|+|||||.++||+..+.+..... . -.-++++|...+|||||+|++.....|+.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes- 252 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES- 252 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-
Confidence 334569999999999999999999999987764321 0 13367999999999999999999888875
Q ss_pred ccCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-----c--chhhHhhHHHHHhhcCccchhhhhhhHHH
Q psy15088 464 DVKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-----W--DIHVRKFSKKAAHASAQRSFVEFVLEPVY 534 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-----~--~~qt~~~~~~~~~~~~~~~fv~fil~~i~ 534 (1291)
+.+.++|||+|||.+|. |+.++.+||++|||+|+..| | ..||++|+......|+..++ ..||
T Consensus 253 ----~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli-vaiN---- 323 (603)
T KOG0458|consen 253 ----KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI-VAIN---- 323 (603)
T ss_pred ----CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE-EEee----
Confidence 89999999999999887 99999999999999999866 2 67999999999999998875 3455
Q ss_pred HHHHHhhCCccCcHHHHHHHh
Q psy15088 535 KLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 535 k~~d~~~~~~~~~l~~i~~~l 555 (1291)
| ||.+ ++.+..+..|..++
T Consensus 324 K-mD~V-~Wsq~RF~eIk~~l 342 (603)
T KOG0458|consen 324 K-MDLV-SWSQDRFEEIKNKL 342 (603)
T ss_pred c-cccc-CccHHHHHHHHHHH
Confidence 5 6743 45555677776665
No 70
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.83 E-value=4.6e-21 Score=175.43 Aligned_cols=80 Identities=73% Similarity=1.264 Sum_probs=76.6
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
||||.|+|+||.+++|+|+++|++|||+|+++++.+++..+.|+|++|++|+|||+++||+.|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999988877777679999999999999999999999999999999999999985
No 71
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=2.5e-19 Score=221.30 Aligned_cols=306 Identities=15% Similarity=0.120 Sum_probs=208.2
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+.++|+|+||+|||||||+++|.+..-. ....+|+|++.....+.|. ++..++|+|||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~------------------~~e~~GIT~~ig~~~v~~~----~~~~i~~iDTP 143 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA------------------QGEAGGITQHIGAYHVENE----DGKMITFLDTP 143 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc------------------cccCCceeecceEEEEEEC----CCcEEEEEECC
Confidence 4569999999999999999999754211 0113589988877777773 23389999999
Q ss_pred Ccccccc--cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhC
Q psy15088 479 ASPVTLL--LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLG 556 (1291)
Q Consensus 479 Gh~~~~~--l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg 556 (1291)
||..|.. .+....+|++++|+|+..|+.+||+.+++.+...++|.++ ++| | +|....+ ..++...+
T Consensus 144 Ghe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIV--viN----K-iDl~~~~----~e~v~~~L- 211 (587)
T TIGR00487 144 GHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIV--AIN----K-IDKPEAN----PDRVKQEL- 211 (587)
T ss_pred CCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEE--EEE----C-cccccCC----HHHHHHHH-
Confidence 9986643 3456788999999999999999999999988888888665 777 5 4432111 11111110
Q ss_pred CCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHH
Q psy15088 557 IHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKE 636 (1291)
Q Consensus 557 ~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~ 636 (1291)
+ . .++. |
T Consensus 212 ----------------~---~--------------------------------------~g~~----~------------ 218 (587)
T TIGR00487 212 ----------------S---E--------------------------------------YGLV----P------------ 218 (587)
T ss_pred ----------------H---H--------------------------------------hhhh----H------------
Confidence 0 0 0000 0
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHHH
Q psy15088 637 MADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCV 716 (1291)
Q Consensus 637 l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv 716 (1291)
..+ ....|++..|+..+ .|+..|++.+.
T Consensus 219 ----------------------------------------------~~~-~~~~~~v~iSAktG-----eGI~eLl~~I~ 246 (587)
T TIGR00487 219 ----------------------------------------------EDW-GGDTIFVPVSALTG-----DGIDELLDMIL 246 (587)
T ss_pred ----------------------------------------------Hhc-CCCceEEEEECCCC-----CChHHHHHhhh
Confidence 000 01136677888888 88888888875
Q ss_pred hhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEE
Q psy15088 717 KHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVH 796 (1291)
Q Consensus 717 ~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~ 796 (1291)
.. . + +.. ..+++++|+.++
T Consensus 247 ~~-~---~-----~~~----------------------------------------------------l~~~~~~~~~~~ 265 (587)
T TIGR00487 247 LQ-S---E-----VEE----------------------------------------------------LKANPNGQASGV 265 (587)
T ss_pred hh-h---h-----hcc----------------------------------------------------ccCCCCCCceeE
Confidence 21 0 0 000 012455789999
Q ss_pred EEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCC
Q psy15088 797 SSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQ 876 (1291)
Q Consensus 797 V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~ 876 (1291)
|++++.+++.|. ++++||++|+|++||.|.+.+ . ..+|..++... ...+++|.||++|.|.|++.
T Consensus 266 V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~~-~----------~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~ 330 (587)
T TIGR00487 266 VIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVGA-A----------YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSD 330 (587)
T ss_pred EEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEECC-C----------ccEEEEEECCC---CCCCCEECCCCEEEEeCCCC
Confidence 999999887765 999999999999999997633 2 24566655433 45789999999999999987
Q ss_pred cccccceeeccccCC---------------------ccccccCCC----CCCCceEEEEEEeCCCCChhHHHHHHHHHHH
Q psy15088 877 PIVKTSTITDLITNE---------------------DMYIFRPLK----FNTQSVIKIAVEPVNPSELPKMLDGLRKVNK 931 (1291)
Q Consensus 877 ~~~k~~Tl~~~~~~~---------------------~~~~~~~~~----~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~ 931 (1291)
.-.-++++....++. ....+..+. -...|.+.+.|++.....+.+|.++|++|..
T Consensus 331 ~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~ 410 (587)
T TIGR00487 331 VPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNN 410 (587)
T ss_pred CCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcc
Confidence 522255665322110 001122221 1124889999999999999999999999999
Q ss_pred hCCceeEE
Q psy15088 932 SYPLLTTK 939 (1291)
Q Consensus 932 ~DPsl~v~ 939 (1291)
++|.+.+.
T Consensus 411 ~~~~~~v~ 418 (587)
T TIGR00487 411 EEVKVKVI 418 (587)
T ss_pred cCCeEEEE
Confidence 99998764
No 72
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.83 E-value=6.6e-20 Score=219.85 Aligned_cols=114 Identities=14% Similarity=0.157 Sum_probs=90.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecc---------------ccc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLL---------------PDV 465 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~~~ 465 (1291)
.|||++||+|||||||+.+|.+. .+|.+++|++||+||+.....+.+ +..
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~---------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGV---------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCC---------------CcccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 59999999999999999999743 257889999999999987665532 100
Q ss_pred -------------CCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-cchhhHhhHHHHHhhcCccchhhhh
Q psy15088 466 -------------KGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-WDIHVRKFSKKAAHASAQRSFVEFV 529 (1291)
Q Consensus 466 -------------~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-~~~qt~~~~~~~~~~~~~~~fv~fi 529 (1291)
....+.++|||||||..+. ++.++..+|.+++|+|+.++ ..+||++++..+...|+++++ .++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iI-Vvl 178 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHII-ILQ 178 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEE-EEE
Confidence 0013589999999998664 67788889999999999986 799999999988888888753 355
Q ss_pred h
Q psy15088 530 L 530 (1291)
Q Consensus 530 l 530 (1291)
|
T Consensus 179 N 179 (460)
T PTZ00327 179 N 179 (460)
T ss_pred e
Confidence 5
No 73
>PRK12740 elongation factor G; Reviewed
Probab=99.83 E-value=2e-20 Score=238.60 Aligned_cols=147 Identities=22% Similarity=0.418 Sum_probs=121.0
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCccee-eeeCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF-AETPN 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~-~~s~n 78 (1291)
|.+||++|+++||++++.. +||||++|+|+||||||+|++||+++| ++++.+|+|.|+|||||++.+..... .+...
T Consensus 403 L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~-~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~ 481 (668)
T PRK12740 403 LSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY-GVEVETGPPQVPYRETIRKKAEGHGRHKKQSG 481 (668)
T ss_pred HHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh-CceeEecCCeeEEeeccCCCccccceeccccC
Confidence 5789999999999999998 689999999999999999999999999 89999999999999999987653222 22222
Q ss_pred CC---eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 79 KR---NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 79 ~~---~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
++ .+++++++|++.+. | |.|. +.+.+ ..
T Consensus 482 ~~~~~~~v~l~~ep~~~~~--------------------------~---------~~f~----------~~~~~----~~ 512 (668)
T PRK12740 482 GHGQFGDVWLEVEPLPRGE--------------------------G---------FEFV----------DKVVG----GA 512 (668)
T ss_pred CCCceEEEEEEEEECCCCC--------------------------c---------eEEe----------ecccC----CC
Confidence 22 58999999998651 1 1222 22211 22
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
+.++|+++|.+||+||+.+||||+||++||+|.|.++.+|..
T Consensus 513 ~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~ 554 (668)
T PRK12740 513 VPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSV 554 (668)
T ss_pred ccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccC
Confidence 457899999999999999999999999999999999999876
No 74
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=227.86 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=104.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCC-------ccccc--------cccccccccccccCceeeeccceeccccc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AEEKN--------LRYTDTLFTEQERGVSIKASPVTLLLPDV 465 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~~~~--------~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 465 (1291)
.||+|+||+|||||||+++|++..+.+.... +...+ ++++|..++|++||+|++.....|.|
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~--- 101 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT--- 101 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc---
Confidence 3799999999999999999999999886431 11122 35899999999999999999888888
Q ss_pred CCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 466 KGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 466 ~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|||||||..+. ++.++..+|++++|+|+..|+.+||++++..+...++++++ .++|
T Consensus 102 --~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~ii-vvvN 165 (632)
T PRK05506 102 --PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVV-LAVN 165 (632)
T ss_pred --CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEE-EEEE
Confidence 78899999999997653 56677899999999999999999999999998888877653 4566
No 75
>KOG0465|consensus
Probab=99.81 E-value=6.6e-20 Score=213.07 Aligned_cols=152 Identities=22% Similarity=0.383 Sum_probs=128.9
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNK 79 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~ 79 (1291)
+.+||.+++++||++.++. +|+||+||+||||||||+..++|+++| ||++.++.|.|+|||||+.+.+.+..+|.+.+
T Consensus 452 fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy-~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSg 530 (721)
T KOG0465|consen 452 FSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY-KVDAELGKPQVAYRETITSPVEFDYTHKKQSG 530 (721)
T ss_pred HHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh-CCccccCCceeeehhhcCCcccceeeeccccC
Confidence 4689999999999999999 899999999999999999999999999 99999999999999999998887777776555
Q ss_pred C----eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCe-EEEcCCCCCcccc
Q psy15088 80 R----NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPN-ILVDDTLPSEVDK 154 (1291)
Q Consensus 80 ~----~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~N-il~~~t~~~~~~~ 154 (1291)
. .++...++|||.+. ..| .|.|.+.+ .
T Consensus 531 G~gqy~kv~g~~epl~~~~--------------------------------------------~~~~eF~~~~~g----~ 562 (721)
T KOG0465|consen 531 GAGQYGKVEGVIEPLPPGS--------------------------------------------NEKFEFSDEIVG----G 562 (721)
T ss_pred CCccccceeeEEeecCCCC--------------------------------------------CceEEEEecccC----C
Confidence 4 57777777777652 112 34444433 2
Q ss_pred cchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCCccc
Q psy15088 155 GLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIY 201 (1291)
Q Consensus 155 ~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~ 201 (1291)
..+.+|..++.+||..++..|||.+-|+.|++|.|.|+..|...+..
T Consensus 563 ~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~e 609 (721)
T KOG0465|consen 563 NVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSE 609 (721)
T ss_pred CCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccH
Confidence 24568999999999999999999999999999999999999876543
No 76
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.81 E-value=1e-20 Score=203.53 Aligned_cols=125 Identities=21% Similarity=0.305 Sum_probs=107.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceec--ccccCCCCeEEEEEe
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLL--LPDVKGKNYLMNIFD 476 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~--~~~~~~~~~~~~liD 476 (1291)
++|||+|+||+|||||||+++|++..+.+...+......+++|..+.|++||+|+++....+. + .++.++|||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-----~~~~i~~iD 76 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-----NNRKITLID 76 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-----SSEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-----cccceeecc
Confidence 578999999999999999999999987665433333345679999999999999999999888 6 899999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||||.++. +.+++..+|++|+|+|+..|+++|++.++..+...++|.++ ++|
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~iv--vlN 130 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIV--VLN 130 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEE--EEE
T ss_pred cccccceeecccceecccccceeeeecccccccccccccccccccccceEE--eee
Confidence 99998654 66677788999999999999999999999999999999655 777
No 77
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=7.8e-19 Score=218.59 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=90.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+++||+|||||||+++|.+. .+|..++|++||+||+.....+..+ +++.++|||||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~---------------~~dr~~eE~~rGiTI~l~~~~~~~~----~g~~i~~IDtPGhe 62 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV---------------NADRLPEEKKRGMTIDLGYAYWPQP----DGRVLGFIDVPGHE 62 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC---------------CCccchhcccCCceEEeeeEEEecC----CCcEEEEEECCCHH
Confidence 5899999999999999999643 2578889999999999876665543 46789999999997
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+. ++.++..+|++++|+|+..|+.+||+++...+...++++++ .++|
T Consensus 63 ~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iI-VVlN 112 (614)
T PRK10512 63 KFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLT-VALT 112 (614)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE-EEEE
Confidence 654 67778889999999999999999999999888878887643 2454
No 78
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.79 E-value=1.2e-18 Score=217.36 Aligned_cols=301 Identities=14% Similarity=0.148 Sum_probs=198.3
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
.++++|+|+||+|||||||+++|....... +..+|+|++.....+.|. ..+.++.++|+||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~-~~~~~~kItfiDT 302 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFE-YKDENQKIVFLDT 302 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEE-ecCCceEEEEEEC
Confidence 467899999999999999999997654321 223688887766555552 2234689999999
Q ss_pred CCcccccc--cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHh
Q psy15088 478 PASPVTLL--LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 478 pGh~~~~~--l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|||..|.. .+.+..+|++|+|+|+..|+.+||...+..+...++|.++ ++| | +|... .....+...+
T Consensus 303 PGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIV--ViN----K-iDl~~----~~~e~v~~eL 371 (742)
T CHL00189 303 PGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIV--AIN----K-IDKAN----ANTERIKQQL 371 (742)
T ss_pred CcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEE--EEE----C-CCccc----cCHHHHHHHH
Confidence 99976652 3456788999999999999999999999998888888665 666 5 44321 1111111111
Q ss_pred CCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHH
Q psy15088 556 GIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNK 635 (1291)
Q Consensus 556 g~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~ 635 (1291)
.. . +++ |
T Consensus 372 --------------------~~---~-----------------------------------~ll----~----------- 378 (742)
T CHL00189 372 --------------------AK---Y-----------------------------------NLI----P----------- 378 (742)
T ss_pred --------------------HH---h-----------------------------------ccc----h-----------
Confidence 00 0 000 0
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHH
Q psy15088 636 EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMC 715 (1291)
Q Consensus 636 ~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~I 715 (1291)
+ -.....|+++.|+..+ .|+..|++.+
T Consensus 379 -----------------e-------------------------------~~g~~vpvv~VSAktG-----~GIdeLle~I 405 (742)
T CHL00189 379 -----------------E-------------------------------KWGGDTPMIPISASQG-----TNIDKLLETI 405 (742)
T ss_pred -----------------H-------------------------------hhCCCceEEEEECCCC-----CCHHHHHHhh
Confidence 0 0012358889999999 8999999988
Q ss_pred HhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEE
Q psy15088 716 VKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMV 795 (1291)
Q Consensus 716 v~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~ 795 (1291)
..+.+.+. ..+++++|+.+
T Consensus 406 ~~l~e~~~-------------------------------------------------------------lk~~~~~~~~g 424 (742)
T CHL00189 406 LLLAEIED-------------------------------------------------------------LKADPTQLAQG 424 (742)
T ss_pred hhhhhhhc-------------------------------------------------------------ccCCCCCCceE
Confidence 76521100 01244568888
Q ss_pred EEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCC
Q psy15088 796 HSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGID 875 (1291)
Q Consensus 796 ~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~ 875 (1291)
+|++...+++.|. ++++||++|+|+.||.|.+ ++. .++++.|.+....++++|.||++|.|.||+
T Consensus 425 ~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~-g~~-------------~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~ 489 (742)
T CHL00189 425 IILEAHLDKTKGP-VATILVQNGTLHIGDIIVI-GTS-------------YAKIRGMINSLGNKINLATPSSVVEIWGLS 489 (742)
T ss_pred EEEEEEEcCCCce-EEEEEEEcCEEecCCEEEE-CCc-------------ceEEEEEEcCCCcCccEEcCCCceEecCcc
Confidence 9999988887765 9999999999999999975 321 245667777778899999999999999995
Q ss_pred CcccccceeeccccCCccc------------------cc----cCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHH
Q psy15088 876 QPIVKTSTITDLITNEDMY------------------IF----RPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVN 930 (1291)
Q Consensus 876 ~~~~k~~Tl~~~~~~~~~~------------------~~----~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~ 930 (1291)
....-++++.-..+...+. .+ ..+.....+.+.+-|......-+..|..+|..+.
T Consensus 490 ~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~ 566 (742)
T CHL00189 490 SVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIP 566 (742)
T ss_pred cCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcC
Confidence 5332245555332110000 00 0001111355666666666666666666666653
No 79
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.79 E-value=8.8e-19 Score=192.70 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=112.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCC-------cc--------ccccccccccccccccCceeeeccceecccc
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AE--------EKNLRYTDTLFTEQERGVSIKASPVTLLLPD 464 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~--------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 464 (1291)
..++..+|++|.|||||+++||+.+..+.... +. -+-+..+|-+..|||.|||||.+...|..
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-- 83 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-- 83 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc--
Confidence 34899999999999999999999988766321 11 12244889999999999999998665544
Q ss_pred cCCCCeEEEEEeCCCcccc-c-ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhC
Q psy15088 465 VKGKNYLMNIFDTPASPVT-L-LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVG 542 (1291)
Q Consensus 465 ~~~~~~~~~liDTpGh~~~-~-~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~ 542 (1291)
+.+.|.+.|||||..+ + |..++..||.+|++|||..|+..||++|.-.+.-.|++++ |..|| | ||-+ +
T Consensus 84 ---~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhv-vvAVN----K-mDLv-d 153 (431)
T COG2895 84 ---EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHV-VVAVN----K-MDLV-D 153 (431)
T ss_pred ---ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEE-EEEEe----e-eccc-c
Confidence 8999999999999743 3 7788889999999999999999999999999999999997 45666 5 5533 2
Q ss_pred CccCcHHHHHH
Q psy15088 543 DVDSSLPAVLD 553 (1291)
Q Consensus 543 ~~~~~l~~i~~ 553 (1291)
-.++.+.+|..
T Consensus 154 y~e~~F~~I~~ 164 (431)
T COG2895 154 YSEEVFEAIVA 164 (431)
T ss_pred cCHHHHHHHHH
Confidence 22344555554
No 80
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.79 E-value=1.8e-19 Score=203.63 Aligned_cols=185 Identities=24% Similarity=0.353 Sum_probs=139.6
Q ss_pred ccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCC
Q psy15088 171 GTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAE 250 (1291)
Q Consensus 171 a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~ 250 (1291)
+|.++-| |++||||+--..-.++-. +.+||+||||||.||..++++.+...|++|++|||.+
T Consensus 42 vMDSnDl--EkERGITILaKnTav~~~----------------~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E 103 (603)
T COG1217 42 VMDSNDL--EKERGITILAKNTAVNYN----------------GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE 103 (603)
T ss_pred hcCccch--hhhcCcEEEeccceeecC----------------CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc
Confidence 4555554 889999986333322222 6699999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhc
Q psy15088 251 GVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVL 330 (1291)
Q Consensus 251 g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 330 (1291)
|.+|||+.+++.+.+.|.++|+||||+|++. .+..++++++..++..||.++++. + .|+
T Consensus 104 GpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~-----------Arp~~Vvd~vfDLf~~L~A~deQL-------d-FPi-- 162 (603)
T COG1217 104 GPMPQTRFVLKKALALGLKPIVVINKIDRPD-----------ARPDEVVDEVFDLFVELGATDEQL-------D-FPI-- 162 (603)
T ss_pred CCCCchhhhHHHHHHcCCCcEEEEeCCCCCC-----------CCHHHHHHHHHHHHHHhCCChhhC-------C-CcE--
Confidence 9999999999999999999999999999985 255667789999999998766543 2 234
Q ss_pred ccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhh----hcCCccccceEEEE
Q psy15088 331 HEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLAD----MMDTPHLIRNVALV 406 (1291)
Q Consensus 331 ~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~irnI~ii 406 (1291)
+|+|+.+|+... +.....+++++|.+.|++ ++|.+.-+.+.+++ .+++.+...+|+ +
T Consensus 163 -----vYAS~~~G~a~~-~~~~~~~~m~pLfe~I~~------------hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIg-i 223 (603)
T COG1217 163 -----VYASARNGTASL-DPEDEADDMAPLFETILD------------HVPAPKGDLDEPLQMQVTQLDYNSYVGRIG-I 223 (603)
T ss_pred -----EEeeccCceecc-CccccccchhHHHHHHHH------------hCCCCCCCCCCCeEEEEEeeccccccceeE-E
Confidence 799999998764 222233455556555554 55555555555555 356677777776 5
Q ss_pred cccCCCh
Q psy15088 407 GHLHHGK 413 (1291)
Q Consensus 407 G~~~~GK 413 (1291)
|++..|+
T Consensus 224 gRi~~G~ 230 (603)
T COG1217 224 GRIFRGT 230 (603)
T ss_pred EEEecCc
Confidence 7887775
No 81
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=4.8e-18 Score=203.51 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=86.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc---------cCCC---
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD---------VKGK--- 468 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------~~~~--- 468 (1291)
.||+++||+|||||||+++|.+ .++|..++|++||+|++.....+.|.. +++.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~---------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTG---------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKC 74 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhC---------------eecccCHhHHhcCcEEEecccccccccccccCccccccccccc
Confidence 5999999999999999999932 258999999999999998765555420 1111
Q ss_pred ---------CeEEEEEeCCCccccc--ccccccccceEEEEecCCCcc-chhhHhhHHHHHhhcCccc
Q psy15088 469 ---------NYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW-DIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 469 ---------~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~-~~qt~~~~~~~~~~~~~~~ 524 (1291)
.+.++|+|||||..+. .+.++..+|++++|+|+..+. ..|+..++..+...+++++
T Consensus 75 ~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~i 142 (411)
T PRK04000 75 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNI 142 (411)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcE
Confidence 3789999999997654 556666789999999999987 8899888888777776654
No 82
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.9e-17 Score=179.91 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=87.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc---------c------
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD---------V------ 465 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------~------ 465 (1291)
-||+.+||+|||||||+.+|.+- .+|.+.+|.+|||||+..+..-.... +
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGv---------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C 75 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGV---------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75 (415)
T ss_pred eEeeeeeecccchhhheehhhce---------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCC
Confidence 39999999999999999998533 47999999999999997655433211 0
Q ss_pred -----C-CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-cchhhHhhHHHHHhhcCccch
Q psy15088 466 -----K-GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-WDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 466 -----~-~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-~~~qt~~~~~~~~~~~~~~~f 525 (1291)
+ .--+++.|+|+|||.... ||.++...|.|+|||+|.+. .+|||++|+....-.|++.++
T Consensus 76 ~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~ii 144 (415)
T COG5257 76 PNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNII 144 (415)
T ss_pred CCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEE
Confidence 0 112679999999997543 77888888999999999998 599999998887777777653
No 83
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.76 E-value=4.7e-19 Score=166.03 Aligned_cols=87 Identities=38% Similarity=0.628 Sum_probs=80.2
Q ss_pred ceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeeccccee
Q psy15088 1145 RLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQ 1224 (1291)
Q Consensus 1145 ~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~ 1224 (1291)
+||||||.++|.+|++++|+|+++|++|||.|++.... +++.+.|+|.+|+++++||.++||+.|+|+|.+++.|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999998776 55799999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q psy15088 1225 IVPGDPLD 1232 (1291)
Q Consensus 1225 ~v~~dp~~ 1232 (1291)
++++++++
T Consensus 80 ~~~~~~~~ 87 (89)
T PF00679_consen 80 PVPGDILD 87 (89)
T ss_dssp EESHHHHH
T ss_pred ECCCChhh
Confidence 99987654
No 84
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.76 E-value=8.4e-19 Score=162.97 Aligned_cols=83 Identities=36% Similarity=0.531 Sum_probs=77.5
Q ss_pred eeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceee
Q psy15088 1146 LMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQI 1225 (1291)
Q Consensus 1146 LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~ 1225 (1291)
||||||.|+|.||++++|.|+++|++|||.|.+.+.. ++.+.|+|++|++++|||.++||+.|+|+|++++.|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~--~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQR--GGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeecc--CCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 6899999999999999999999999999999877643 36899999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy15088 1226 VPGDP 1230 (1291)
Q Consensus 1226 v~~dp 1230 (1291)
+++++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 98654
No 85
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2e-18 Score=186.12 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=101.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCcc-ccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAE-EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~-~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.|||++||+|||||||+++|++.... .+.. ..+..++|+.++|++||+|++++.+.|.+ +++.|+||||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~---~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-----~~~~i~~iDtPG 74 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAK---KGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-----ANRHYAHVDCPG 74 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh---cccccccccccccCChhhhhcCccEEeeeeEecC-----CCeEEEEEECcC
Confidence 39999999999999999999987431 1111 13346799999999999999999998887 789999999999
Q ss_pred ccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|..+. ++.++..+|++++|+|+..|+.+|+++++..+...++|+++ .++|
T Consensus 75 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iI-vviN 126 (195)
T cd01884 75 HADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIV-VFLN 126 (195)
T ss_pred HHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEE-EEEe
Confidence 97654 66777788999999999999999999999999999998652 3666
No 86
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=1.1e-17 Score=200.52 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=89.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc-----------c----
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD-----------V---- 465 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------~---- 465 (1291)
.||+++||+|||||||+++|.+. .+|.+++|++||+|++.....+.+.. .
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~---------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCe---------------ecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 49999999999999999999421 37899999999999998866654320 0
Q ss_pred CC------CCeEEEEEeCCCccccc--ccccccccceEEEEecCCCcc-chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 466 KG------KNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW-DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 466 ~~------~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~-~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+. .++.++++|||||..+. ++.++..+|++++|+|+..|. .+|+++++..+...++++++ .++|
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iI-VvvN 142 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIV-IVQN 142 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEE-EEEE
Confidence 00 25789999999997654 556666789999999999997 89999998888777776643 2455
No 87
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=2.1e-17 Score=205.38 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=91.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+++||+|||||||+++|.+.. +|..++|++||+|++.....+.+ +++.++++|||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~---------------~d~~~eE~~rGiTid~~~~~~~~-----~~~~v~~iDtPGhe 61 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA---------------ADRLPEEKKRGMTIDLGFAYFPL-----PDYRLGFIDVPGHE 61 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc---------------CcCChhHhcCCceEEeEEEEEEe-----CCEEEEEEECCCHH
Confidence 89999999999999999997432 46778899999999988777776 56999999999997
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+. ++..+..+|++++|+|+..|+.+||+++...+...|+|+++ .++|
T Consensus 62 ~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iI-VVlN 111 (581)
T TIGR00475 62 KFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTI-VVIT 111 (581)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE-EEEE
Confidence 654 66677789999999999999999999998888888888443 2555
No 88
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.73 E-value=4.1e-18 Score=156.52 Aligned_cols=80 Identities=59% Similarity=1.076 Sum_probs=76.1
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
||||.|+|+||++++|+|+++|++|||.|++.+..++++.+.|+|++|++|+|||.++||+.|+|+|+|++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999988776666779999999999999999999999999999999999999985
No 89
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.73 E-value=5.6e-18 Score=154.69 Aligned_cols=78 Identities=35% Similarity=0.550 Sum_probs=73.8
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
||||.|+|.||++++|+|+++|++|||+|++.+... +.+.|+|.+|++|+|||.++||+.|+|+|++++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999877543 579999999999999999999999999999999999999985
No 90
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.72 E-value=6.3e-18 Score=154.38 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=73.4
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
||||.|+|+||++++|+|+++|++|||+|++.+.. ++.+.|+|.+|++++|||.++||+.|+|+|++++.|+||+++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~--~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIK--GDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEec--CCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 89999999999999999999999999999976653 4689999999999999999999999999999999999999873
No 91
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.71 E-value=8.7e-18 Score=153.61 Aligned_cols=78 Identities=36% Similarity=0.560 Sum_probs=74.0
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
||||.|+|+||++++|+|+++|++|||.|++++.. ++.+.|+|.+|++|+|||.++||+.|+|+|++++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~--~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR--GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceecc--CCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 89999999999999999999999999999987754 3689999999999999999999999999999999999999985
No 92
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=6.9e-17 Score=184.58 Aligned_cols=104 Identities=23% Similarity=0.335 Sum_probs=91.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+..||++||||||+..+.+. .+|.+++|++||+|||.....+.. .++.+.|||+|||+
T Consensus 2 ii~t~GhidHgkT~L~~altg~---------------~~d~l~EekKRG~TiDlg~~y~~~-----~d~~~~fIDvpgh~ 61 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG---------------VTDRLPEEKKRGITIDLGFYYRKL-----EDGVMGFIDVPGHP 61 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc---------------ccccchhhhhcCceEeeeeEeccC-----CCCceEEeeCCCcH
Confidence 6889999999999999998644 368999999999999987655555 67799999999999
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
.+. ++.++..+|.|++||++.+|+.+||.+++....-.|+++.+
T Consensus 62 ~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~gi 107 (447)
T COG3276 62 DFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGI 107 (447)
T ss_pred HHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceE
Confidence 776 77787888999999999999999999999999889999954
No 93
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.70 E-value=2.4e-17 Score=148.69 Aligned_cols=73 Identities=29% Similarity=0.611 Sum_probs=67.6
Q ss_pred CCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcC
Q psy15088 903 TQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVAD 976 (1291)
Q Consensus 903 ~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~ 976 (1291)
++|+++++|+|.+++|.++|.+||++|+++||++.+.. ++|||++|+||||+|||+++++|+++| |+++++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~-~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF-GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT-CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH-CCeeEecC
Confidence 48999999999999999999999999999999999987 799999999999999999999999999 79998874
No 94
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=9.6e-17 Score=175.95 Aligned_cols=166 Identities=33% Similarity=0.477 Sum_probs=125.4
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-..+|+.||++++.....++-...... ....+ ++.++++|||||.+|..++..+++.+|++|+|||+.+|++
T Consensus 38 ~D~~~~E~~RgiTi~~~~~~~~~~~~~~~---~~~~~---~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~ 111 (222)
T cd01885 38 MDSREDEQERGITMKSSAISLYFEYEEED---KADGN---EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC 111 (222)
T ss_pred ccCCHHHHHhccccccceEEEEEecCccc---ccCCC---ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC
Confidence 45566899999999876654442210000 00011 4578999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccC
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHED 333 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 333 (1291)
.+++++++++.+.++|+|+|+||+|+...++++++++.|.++.++++++|+++..+.-++.... +++. ..+....+
T Consensus 112 ~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~-~~~~---~~~~p~~g 187 (222)
T cd01885 112 VQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEK-DDEK---WYFSPQKG 187 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhccccccccc-CcCC---cEEeeCCC
Confidence 9999999999999999999999999998889999999999999999999999998853221100 0011 01111223
Q ss_pred cccccCcccccCCCcc
Q psy15088 334 KRYYPTAVEVFGPDVE 349 (1291)
Q Consensus 334 ~~~~~sa~~~~g~~~e 349 (1291)
+..|.|+.+||+...+
T Consensus 188 nv~f~S~~~gw~f~~~ 203 (222)
T cd01885 188 NVAFGSALHGWGFTII 203 (222)
T ss_pred cEEEEecccCEEeccc
Confidence 4578888888877543
No 95
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.69 E-value=2.7e-17 Score=150.81 Aligned_cols=79 Identities=42% Similarity=0.632 Sum_probs=74.8
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecC
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~ 1227 (1291)
||||.|+|+||++++|+|+++|++|||.|.+.+.. +++.+.|+|++|++++|||.++||+.|+|+|++++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~-~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPR-GTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEec-CCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 89999999999999999999999999999987764 35789999999999999999999999999999999999999974
No 96
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.68 E-value=5.8e-17 Score=161.16 Aligned_cols=98 Identities=31% Similarity=0.412 Sum_probs=84.0
Q ss_pred hccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCC
Q psy15088 1040 KYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEP 1119 (1291)
Q Consensus 1040 ~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~ 1119 (1291)
.+||+...++.+|+++|...++|++++.+... .+.++++++|.+||++|+++|||||+||+||+|+|.|+.+|.
T Consensus 23 ~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~----~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~-- 96 (120)
T PF03764_consen 23 QYGGKRQFAKVILRVEPLEGGGNIFVDETEGG----QLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE-- 96 (120)
T ss_dssp ECTSSEEEEEEEEEEEETSTSSEEEEESSSTT----SSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--
T ss_pred HhCCCCceEEEEEEEeecccCCceeeeccccc----cccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--
Confidence 35888888999999999887789999876432 367889999999999999999999999999999999999997
Q ss_pred CCCCcCcHHHHHHHHHHHHHHhCC
Q psy15088 1120 LHRGGGQIIPTARRVAYSAFLMAT 1143 (1291)
Q Consensus 1120 ~~~~~~qii~~~r~~~~~a~l~a~ 1143 (1291)
.+++++++.+++++||++||++|+
T Consensus 97 ~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 97 VDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CcCCHHHHHHHHHHHHHHHHHhcC
Confidence 456778999999999999999885
No 97
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.67 E-value=8.6e-17 Score=147.16 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=73.3
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeec
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIV 1226 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v 1226 (1291)
||||.++|.||++++|+|+++|++|||+|.+.+.. +++.+.|+|.+|++++|||.++||+.|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPD-GNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEEC-CCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 89999999999999999999999999999987764 3367999999999999999999999999999999999999975
No 98
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.3e-16 Score=179.05 Aligned_cols=158 Identities=23% Similarity=0.253 Sum_probs=130.3
Q ss_pred eEEEeccCCCC-----CeEEEcCCCCCccccc----chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCCc
Q psy15088 129 SIWAFGPEVTG-----PNILVDDTLPSEVDKG----LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPS 199 (1291)
Q Consensus 129 ~i~~fgp~~~g-----~Nil~~~t~~~~~~~~----~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as 199 (1291)
++.-.|+-+.| .++|.+.- ..+.. +-++-++.-..+|.+||..+-+.+|+.||+|+++..+.|.++
T Consensus 9 nl~~iGHVD~GKSTl~GrLly~~G---~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~-- 83 (428)
T COG5256 9 NLVFIGHVDAGKSTLVGRLLYDLG---EIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD-- 83 (428)
T ss_pred EEEEEcCCCCCchhhhhhhHHHhC---CCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC--
Confidence 44556766555 35666532 12222 234455667788999999999999999999999999999988
Q ss_pred cccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC-------CchhHHHHHHHHHHcCCcE-E
Q psy15088 200 IYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG-------VMLNTERLLKHAVQEKMAI-T 271 (1291)
Q Consensus 200 ~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g-------~~~~~~~~~~~l~~~~~~~-i 271 (1291)
.+.|++||||||.||..+|+.++..||++||||||+.| +.+||++++-+++-.|+.. |
T Consensus 84 --------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI 149 (428)
T COG5256 84 --------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI 149 (428)
T ss_pred --------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE
Confidence 56899999999999999999999999999999999999 9999999999999999985 5
Q ss_pred EEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15088 272 LCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDD 313 (1291)
Q Consensus 272 lvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 313 (1291)
++|||||... .-.++|+++..++..+++.+|+..
T Consensus 150 VavNKMD~v~--------wde~rf~ei~~~v~~l~k~~G~~~ 183 (428)
T COG5256 150 VAVNKMDLVS--------WDEERFEEIVSEVSKLLKMVGYNP 183 (428)
T ss_pred EEEEcccccc--------cCHHHHHHHHHHHHHHHHHcCCCc
Confidence 5699999874 223689999999999999999854
No 99
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.64 E-value=1.1e-15 Score=167.92 Aligned_cols=128 Identities=39% Similarity=0.558 Sum_probs=105.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCc-cccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-EEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
|||+|+||+|+|||||+++|++..+.+...+. .....+++|.+++|++||+|+++..+++.|...+++.+.++++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 79999999999999999999999877654322 23456789999999999999999999998865556789999999999
Q ss_pred ccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|..+. .......+|++++|+|+..+...+++++++.+...++|.++ ++|
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~ii--viN 131 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVL--VIN 131 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 97654 44556688999999999999888888888887767777665 666
No 100
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.64 E-value=1.3e-16 Score=174.39 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=102.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCC--c-----------cccccccccccccccccCceeeeccceecccccCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQP--A-----------EEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK 468 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~--~-----------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~ 468 (1291)
||||+||+|||||||+++|++..+.+.... . .-...+++|..++|++||+|+++....+.| +
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-----~ 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-----P 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-----C
Confidence 699999999999999999999999876321 0 114567999999999999999999999888 7
Q ss_pred CeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 469 NYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 469 ~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+..++|+|||||..+. .+.++..+|++++|+|+..++..++++++..+...+.++++ .++|
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iI-vviN 138 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVV-VAVN 138 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEE-EEEE
Confidence 8899999999997543 45567788999999999999999998888887777766643 3455
No 101
>KOG0462|consensus
Probab=99.63 E-value=2.5e-16 Score=181.91 Aligned_cols=168 Identities=25% Similarity=0.282 Sum_probs=117.7
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
|.=|++||||++..-+.+-.. + ++ .+.+||||||||+||..++.+.+..|||+||||||.+|+++||
T Consensus 100 l~vERERGITIkaQtasify~--------~--~~---~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT 166 (650)
T KOG0462|consen 100 LQVERERGITIKAQTASIFYK--------D--GQ---SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQT 166 (650)
T ss_pred hhhhhhcCcEEEeeeeEEEEE--------c--CC---ceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHH
Confidence 446999999999654433222 2 22 4679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCccc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRY 336 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 336 (1291)
...+..+.+.|..+|.|+||+|++. .+++. +..++..++ ++.. ++.+
T Consensus 167 ~anf~lAfe~~L~iIpVlNKIDlp~----adpe~-------V~~q~~~lF---~~~~-------------------~~~i 213 (650)
T KOG0462|consen 167 VANFYLAFEAGLAIIPVLNKIDLPS----ADPER-------VENQLFELF---DIPP-------------------AEVI 213 (650)
T ss_pred HHHHHHHHHcCCeEEEeeeccCCCC----CCHHH-------HHHHHHHHh---cCCc-------------------cceE
Confidence 9999999999999999999999985 23322 222333333 3211 1228
Q ss_pred ccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhh---cCCccccceEEEEcccCCCh
Q psy15088 337 YPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADM---MDTPHLIRNVALVGHLHHGK 413 (1291)
Q Consensus 337 ~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~irnI~iiG~~~~GK 413 (1291)
++||..|.|.. .++++||. .+|.+.-..+.++.+ +..-+..|-+...+++..|+
T Consensus 214 ~vSAK~G~~v~-----------~lL~AII~------------rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~ 270 (650)
T KOG0462|consen 214 YVSAKTGLNVE-----------ELLEAIIR------------RVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGV 270 (650)
T ss_pred EEEeccCccHH-----------HHHHHHHh------------hCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeee
Confidence 99999988775 46666665 334444444443332 22334455555566666664
No 102
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.62 E-value=6.3e-16 Score=141.68 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=72.4
Q ss_pred ccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccc-cCchHHHhhccccceEeeecccceeec
Q psy15088 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDS-FGFETDLRTHTQGQAFCLSVFHHWQIV 1226 (1291)
Q Consensus 1148 EPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~es-fgf~~~LRs~T~G~a~~~~~f~~~~~v 1226 (1291)
|||+.++|.||++++|.|+++|++|||.|++.+.. +++...|+|.+|++++ +||.++||+.|+|+|+|++.|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~-~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYL-DANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEec-CCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 89999999999999999999999999999987754 3247899999999999 699999999999999999999999975
No 103
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.62 E-value=2.6e-15 Score=142.29 Aligned_cols=94 Identities=61% Similarity=0.993 Sum_probs=83.4
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
++++|||+..+++.+++++|+|||||+|++||.|++++++++..+++....++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999887677999999999999999999998876554444456789999999999999999999999999999
Q ss_pred cCCCcccccceeec
Q psy15088 873 GIDQPIVKTSTITD 886 (1291)
Q Consensus 873 Gl~~~~~k~~Tl~~ 886 (1291)
|+++.+.|++|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999999998864
No 104
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.62 E-value=7.6e-15 Score=162.73 Aligned_cols=276 Identities=22% Similarity=0.283 Sum_probs=186.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccc-cccccccccccccCceeeeccceecccc----------------
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKN-LRYTDTLFTEQERGVSIKASPVTLLLPD---------------- 464 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~-~~~~D~~~~E~erGiTi~~~~~~~~~~~---------------- 464 (1291)
+|+..||+|||||||+++|. +|. ....++. -.|.|..+.|.+||.|-+.+..-+-+.+
T Consensus 119 ~Vg~aGhVdhGKSTlvG~Lv--tG~---~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 119 LVGVAGHVDHGKSTLVGVLV--TGR---LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred EEEEeccccCCcceEEEEEE--ecC---CCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 89999999999999999986 222 1111222 3389999999999998666554444432
Q ss_pred --cCCCCeEEEEEeCCCccccc--ccccc--cccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHH
Q psy15088 465 --VKGKNYLMNIFDTPASPVTL--LLPDV--KGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVA 538 (1291)
Q Consensus 465 --~~~~~~~~~liDTpGh~~~~--~l~~~--~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d 538 (1291)
.+..++.+.|+||-||.-.. +++++ .+.|..++++.|.+|++.-||+|+..+...++|.++ .+. | .|
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviV--vvT----K-~D 266 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIV--VVT----K-ID 266 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEE--EEE----e-cc
Confidence 13456899999999996322 34432 367999999999999999999999999999999875 332 3 22
Q ss_pred HhhCCccCcHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCce
Q psy15088 539 QVVGDVDSSLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKF 618 (1291)
Q Consensus 539 ~~~~~~~~~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~ 618 (1291)
.. .++.+..+.++ ...+|+.+- .+|.
T Consensus 267 ~~---~ddr~~~v~~e-------------i~~~Lk~v~-----Rip~--------------------------------- 292 (527)
T COG5258 267 MV---PDDRFQGVVEE-------------ISALLKRVG-----RIPL--------------------------------- 292 (527)
T ss_pred cC---cHHHHHHHHHH-------------HHHHHHHhc-----ccce---------------------------------
Confidence 11 12334444432 233444322 2331
Q ss_pred eecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH-hhccccccceEEeec
Q psy15088 619 LIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI-SVYNTETMPIIKFFE 697 (1291)
Q Consensus 619 liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl-~~~~~~~~PVl~~sa 697 (1291)
.+. +......... ..-++...||+.-|+
T Consensus 293 ~vk---------------------------------------------------~~~d~v~aa~a~k~~~~vvPi~~tSs 321 (527)
T COG5258 293 IVK---------------------------------------------------DTDDVVLAAKAMKAGRGVVPIFYTSS 321 (527)
T ss_pred eee---------------------------------------------------ccchhHHhhhhhhcCCceEEEEEEec
Confidence 000 0000011111 113445889999999
Q ss_pred chhhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCC
Q psy15088 698 AKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGD 777 (1291)
Q Consensus 698 ~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1291)
-.+ .|. .+||-+..+||.-. .
T Consensus 322 VTg-----~Gl-dlL~e~f~~Lp~rr--------~--------------------------------------------- 342 (527)
T COG5258 322 VTG-----EGL-DLLDEFFLLLPKRR--------R--------------------------------------------- 342 (527)
T ss_pred ccC-----ccH-HHHHHHHHhCCccc--------c---------------------------------------------
Confidence 888 665 45777777776321 0
Q ss_pred chhhhhhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCce
Q psy15088 778 SDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYK 857 (1291)
Q Consensus 778 ~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~ 857 (1291)
.+..+|+.|||.|+|...+.|. ++.|-|-||+|+.||+|++ ||. .....++.+|++|.+ +.
T Consensus 343 ---------~~d~g~flmYId~iYsVtGVGt-VvsGsV~~G~l~~gd~vll-GP~----~~G~fr~v~vkSIem----h~ 403 (527)
T COG5258 343 ---------WDDEGPFLMYIDKIYSVTGVGT-VVSGSVKSGILHVGDTVLL-GPF----KDGKFREVVVKSIEM----HH 403 (527)
T ss_pred ---------cCCCCCeEEEEEeeEEEeeeEE-EEeeeEEeeeeccCCEEEE-ccC----CCCcEEEEEEEEEEE----ee
Confidence 1235799999999999988776 8999999999999999986 553 233567788888763 46
Q ss_pred eeeceeeCCCeEEEc
Q psy15088 858 VEVNRVPAGNWVLIE 872 (1291)
Q Consensus 858 ~~v~~a~aGnIv~I~ 872 (1291)
..|++|.||+|+++.
T Consensus 404 ~rvdsa~aG~iig~A 418 (527)
T COG5258 404 YRVDSAKAGSIIGIA 418 (527)
T ss_pred EEeccccCCcEEEEE
Confidence 789999999999763
No 105
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=2.7e-16 Score=173.28 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=103.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCc--c-----cccc------ccccccccccccCceeeeccceecccccCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPA--E-----EKNL------RYTDTLFTEQERGVSIKASPVTLLLPDVKGK 468 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~--~-----~~~~------~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~ 468 (1291)
||+|+||+|||||||+++|++..|.+...+. . ..+. +++|+.++|++||+|++++...|.| +
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-----~ 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-----E 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-----C
Confidence 7999999999999999999999987654331 0 1222 4899999999999999999999998 7
Q ss_pred CeEEEEEeCCCccccc--ccccccccceEEEEecCCC-------ccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHH
Q psy15088 469 NYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPG-------MWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQ 539 (1291)
Q Consensus 469 ~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~-------g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~ 539 (1291)
++.++++|||||..+. .+.++..+|++|+|+|+.. +...|+++++..+...+.++++ .++| | +|.
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-ivvN----K-~Dl 149 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLI-VAVN----K-MDD 149 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEE-EEEE----c-ccc
Confidence 9999999999997543 4556667899999999988 4677898888888777766543 3666 5 665
Q ss_pred h
Q psy15088 540 V 540 (1291)
Q Consensus 540 ~ 540 (1291)
.
T Consensus 150 ~ 150 (219)
T cd01883 150 V 150 (219)
T ss_pred c
Confidence 4
No 106
>KOG1145|consensus
Probab=99.61 E-value=3.7e-15 Score=172.07 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=90.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
|+.-|.|+||+|||||||++.|-+..-+-... -|||......+...+ ++..++|+|||
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~------------------GGITQhIGAF~V~~p----~G~~iTFLDTP 209 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA------------------GGITQHIGAFTVTLP----SGKSITFLDTP 209 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhc------------------CCccceeceEEEecC----CCCEEEEecCC
Confidence 66799999999999999999987654322111 199999888888886 78999999999
Q ss_pred Ccccccccc--cccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVTLLLP--DVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~~~l~--~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||..|.+|+ ++..+|++|+|+.+.+|+.+||.+-...+...+.|.++ .||
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVv--Ain 261 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVV--AIN 261 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEE--EEe
Confidence 998777554 55678999999999999999999999999999999876 776
No 107
>KOG0459|consensus
Probab=99.61 E-value=1e-15 Score=171.00 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=118.9
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------ccc--c----ccccccccccccccCceeeeccceeccc
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AEE--K----NLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~~--~----~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
|..-.|+.++||+|+||||.-+.+++.++...... +.+ . -.+++|+..+||++|-|+......|..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt- 154 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET- 154 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe-
Confidence 45567999999999999999999999988654321 111 1 156899999999999999999888877
Q ss_pred ccCCCCeEEEEEeCCCcccc--cccccccccceEEEEecCCCc-----c--chhhHhhHHHHHhhcCccchhhhhhhHHH
Q psy15088 464 DVKGKNYLMNIFDTPASPVT--LLLPDVKGKNYLMNIFDTPGM-----W--DIHVRKFSKKAAHASAQRSFVEFVLEPVY 534 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~~~--~~l~~~~~ad~~v~vida~~g-----~--~~qt~~~~~~~~~~~~~~~fv~fil~~i~ 534 (1291)
..++|+++|+|||.-+ .++.++.+||.+++|+.|..| | ..||+.++..+...|+.++ |.+||
T Consensus 155 ----e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l-Vv~vN---- 225 (501)
T KOG0459|consen 155 ----ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL-IVLIN---- 225 (501)
T ss_pred ----cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE-EEEEE----
Confidence 8999999999999744 489999999999999988644 4 4599999999999999998 46777
Q ss_pred HHHHHhhCCccCcHHHHHHHh
Q psy15088 535 KLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 535 k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|+.|-..+..++.+.++..++
T Consensus 226 KMddPtvnWs~eRy~E~~~k~ 246 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKL 246 (501)
T ss_pred eccCCccCcchhhHHHHHHHH
Confidence 754444455556677776655
No 108
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.1e-15 Score=166.35 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=111.3
Q ss_pred hhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEE
Q psy15088 167 GFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFV 246 (1291)
Q Consensus 167 GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vV 246 (1291)
.+.+|..-+-|.+|+++|||+++.--.|.+. .++|.+.|||||..|..+|.++.+-||.+|++|
T Consensus 54 ~~D~ALLvDGL~AEREQGITIDVAYRyFsT~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLV 117 (431)
T COG2895 54 KIDLALLVDGLEAEREQGITIDVAYRYFSTE----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLV 117 (431)
T ss_pred ccchhhhhhhhHHHHhcCceEEEEeeecccc----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEE
Confidence 4667777888889999999999999999988 789999999999999999999999999999999
Q ss_pred ECCCCCchhHHHHHHHHHHcCCcEE-EEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15088 247 DAAEGVMLNTERLLKHAVQEKMAIT-LCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDD 314 (1291)
Q Consensus 247 D~~~g~~~~~~~~~~~l~~~~~~~i-lvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 314 (1291)
||+.|+..||++|.-.+.-.|++.+ +.|||||+.. .-..+|++|.++..++.+.||+...
T Consensus 118 DAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd--------y~e~~F~~I~~dy~~fa~~L~~~~~ 178 (431)
T COG2895 118 DARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD--------YSEEVFEAIVADYLAFAAQLGLKDV 178 (431)
T ss_pred ecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccc--------cCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999955 5599999974 1235788999999999999998554
No 109
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.3e-15 Score=159.74 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=98.0
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
..+|+.||||++...+.+.+. ++++-.+|||||.||.++|+.+..++|++||||.|.+|.+|||
T Consensus 53 aPeEk~rGITIntahveyet~----------------~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT 116 (394)
T COG0050 53 APEEKARGITINTAHVEYETA----------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT 116 (394)
T ss_pred CchHhhcCceeccceeEEecC----------------CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc
Confidence 458999999999999999888 6788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcE-EEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy15088 257 ERLLKHAVQEKMAI-TLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLID 312 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~-ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 312 (1291)
++++-++|+.|+|. ++|+||+|....+ ..+..+-.++..+++.+||+
T Consensus 117 rEHiLlarqvGvp~ivvflnK~Dmvdd~---------ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 117 REHILLARQVGVPYIVVFLNKVDMVDDE---------ELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred hhhhhhhhhcCCcEEEEEEecccccCcH---------HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999985 5569999987411 23445567899999999985
No 110
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.57 E-value=3.4e-14 Score=176.45 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=77.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCcc--ccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAE--EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~--~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
|...|+|+||+|||||||+++|.+........+.. .-++++.+....++.+|.+.+.....+.+ ..++|+|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~iD 77 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI-------PGLLFID 77 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc-------CCEEEEE
Confidence 44589999999999999999997554221111100 11122222222222223222211111111 1279999
Q ss_pred CCCccccccc--ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 477 TPASPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 477 TpGh~~~~~l--~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||||..|..+ +....+|++++|+|+..|+.+|+..++..+...++|.++ ++|
T Consensus 78 TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIv--viN 131 (586)
T PRK04004 78 TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVV--AAN 131 (586)
T ss_pred CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEE--EEE
Confidence 9999866533 345578999999999999999999999888888888554 666
No 111
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=9e-14 Score=163.50 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=86.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
|..-|+|+||+|||||||++.+-+.+-. .... -|||.......+.++. .+...++|||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~Ea-----------------GGITQhIGA~~v~~~~--~~~~~itFiDTP 63 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEA-----------------GGITQHIGAYQVPLDV--IKIPGITFIDTP 63 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc-cccC-----------------CceeeEeeeEEEEecc--CCCceEEEEcCC
Confidence 3457999999999999999998654321 1111 2899888877777620 135799999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||.-|.+| ++.+-+|++++|+|+.+|+.|||.+-.+.++..+.|.++ ++|
T Consensus 64 GHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iV--AiN 115 (509)
T COG0532 64 GHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVV--AIN 115 (509)
T ss_pred cHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEE--EEe
Confidence 99766544 456788999999999999999999999999999999876 887
No 112
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=3.2e-14 Score=153.48 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=105.5
Q ss_pred CCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch
Q psy15088 175 GPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML 254 (1291)
Q Consensus 175 GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~ 254 (1291)
+-+.+|..||++++.....++.. ++++++||||||.+|..++..+++.+|++++|||+.+|+.+
T Consensus 41 d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~ 104 (195)
T cd01884 41 DKAPEEKARGITINTAHVEYETA----------------NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP 104 (195)
T ss_pred cCChhhhhcCccEEeeeeEecCC----------------CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH
Confidence 33558999999999876665443 56899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccC
Q psy15088 255 NTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHED 333 (1291)
Q Consensus 255 ~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 333 (1291)
|++++++++.+.++| +|+|+||+|+... . ..++.+.+++...+..+|+... ..++
T Consensus 105 ~~~~~~~~~~~~~~~~iIvviNK~D~~~~------~---~~~~~~~~~i~~~l~~~g~~~~----------~v~i----- 160 (195)
T cd01884 105 QTREHLLLARQVGVPYIVVFLNKADMVDD------E---ELLELVEMEVRELLSKYGFDGD----------NTPI----- 160 (195)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCCCc------H---HHHHHHHHHHHHHHHHhccccc----------CCeE-----
Confidence 999999999999998 6788999998521 1 2345567788888988887321 1233
Q ss_pred cccccCcccccCC
Q psy15088 334 KRYYPTAVEVFGP 346 (1291)
Q Consensus 334 ~~~~~sa~~~~g~ 346 (1291)
++.||.+|.+.
T Consensus 161 --ipiSa~~g~n~ 171 (195)
T cd01884 161 --VRGSALKALEG 171 (195)
T ss_pred --EEeeCccccCC
Confidence 78899988764
No 113
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.53 E-value=1.8e-14 Score=155.02 Aligned_cols=130 Identities=26% Similarity=0.309 Sum_probs=103.7
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
...|..+|++.++....+... + ++++|++||||||.+|..++..+++.+|++|+|||+.+|+.+|+
T Consensus 46 ~~~e~~~~~ti~~~~~~~~~~-----------~---~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~ 111 (188)
T PF00009_consen 46 HPEERERGITIDLSFISFEKN-----------E---NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT 111 (188)
T ss_dssp SHHHHHCTSSSSSEEEEEEBT-----------E---SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH
T ss_pred cchhhhccccccccccccccc-----------c---cccceeecccccccceeecccceecccccceeeeeccccccccc
Confidence 557889999998777766510 1 16799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHH-HHHHHhcCCCCcCCccccccccchhhcccCcc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEIN-GLLRYLLIDDDREDGDEEMGDSQAVVLHEDKR 335 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 335 (1291)
++++++++..++|+|+|+||||+.. ..+.++.+++. .+++.+++... ...++
T Consensus 112 ~~~l~~~~~~~~p~ivvlNK~D~~~-----------~~~~~~~~~~~~~l~~~~~~~~~---------~~~~v------- 164 (188)
T PF00009_consen 112 EEHLKILRELGIPIIVVLNKMDLIE-----------KELEEIIEEIKEKLLKEYGENGE---------EIVPV------- 164 (188)
T ss_dssp HHHHHHHHHTT-SEEEEEETCTSSH-----------HHHHHHHHHHHHHHHHHTTSTTT---------STEEE-------
T ss_pred ccccccccccccceEEeeeeccchh-----------hhHHHHHHHHHHHhccccccCcc---------ccceE-------
Confidence 9999999999999999999999873 35566777776 45566654321 12233
Q ss_pred cccCcccccCCC
Q psy15088 336 YYPTAVEVFGPD 347 (1291)
Q Consensus 336 ~~~sa~~~~g~~ 347 (1291)
++.||.+|+|.+
T Consensus 165 i~~Sa~~g~gi~ 176 (188)
T PF00009_consen 165 IPISALTGDGID 176 (188)
T ss_dssp EEEBTTTTBTHH
T ss_pred EEEecCCCCCHH
Confidence 788999988764
No 114
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.52 E-value=4e-14 Score=169.91 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=113.2
Q ss_pred hccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEE
Q psy15088 168 FQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247 (1291)
Q Consensus 168 F~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD 247 (1291)
|.||+..+-+.+|+.||+++++....++.. +++|+|||||||.+|..++..++..+|++|||||
T Consensus 49 ~~~~~~~D~~~eE~~rgiTid~~~~~~~~~----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVd 112 (406)
T TIGR02034 49 IDLALLVDGLQAEREQGITIDVAYRYFSTD----------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVD 112 (406)
T ss_pred eeeeeeccCChHHhcCCcCeEeeeEEEccC----------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEE
Confidence 888888999999999999999877766554 5689999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccc
Q psy15088 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQ 326 (1291)
Q Consensus 248 ~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1291)
+.+|+.+||++++.+++..++| +|+|+||||+... + ...+.++.+++..++..+++...
T Consensus 113 a~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~-------~-~~~~~~i~~~~~~~~~~~~~~~~------------ 172 (406)
T TIGR02034 113 ARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY-------D-EEVFENIKKDYLAFAEQLGFRDV------------ 172 (406)
T ss_pred CCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc-------h-HHHHHHHHHHHHHHHHHcCCCCc------------
Confidence 9999999999999999998886 6779999998631 1 23566677777777777765321
Q ss_pred hhhcccCcccccCcccccCCC
Q psy15088 327 AVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 327 ~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
++ ++.||.+|.|.+
T Consensus 173 ~i-------ipiSA~~g~ni~ 186 (406)
T TIGR02034 173 TF-------IPLSALKGDNVV 186 (406)
T ss_pred cE-------EEeecccCCCCc
Confidence 12 678999877664
No 115
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.51 E-value=5.1e-14 Score=149.86 Aligned_cols=125 Identities=24% Similarity=0.301 Sum_probs=96.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
|||+++|++|+|||||+++|++..+.+... .....++|+...|++||+|.++..+.+.|....++++.++|+|||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR---EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC---CCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 799999999999999999999987765431 12356899999999999999988877766433457889999999999
Q ss_pred cccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
..+. ....+..+|++|+|+|+..+.+.++...+......++|.++ ++|
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iii--v~N 127 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIP--VIN 127 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEE--EEE
Confidence 7543 33345678999999999988877777766665556666543 444
No 116
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.50 E-value=8e-14 Score=145.54 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=97.6
Q ss_pred HHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc--CCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHh
Q psy15088 232 VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE--KMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYL 309 (1291)
Q Consensus 232 ~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~--~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 309 (1291)
+..++..||.+++|||++.+....+..+.+.+++. ++|+|+|+||+|+... ++ +..+++.+. ..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~~----~~~~~~~~~----~~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------WV----TARWVKILS----KE 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------HH----HHHHHHHHh----cC
Confidence 56799999999999999998888899999988764 4899999999998531 11 111221111 00
Q ss_pred cCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHH
Q psy15088 310 LIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEF 389 (1291)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1291)
. ... .++.||.+++|.+ .+.+.+
T Consensus 68 ~-------------~~~--------~~~iSa~~~~~~~-----------~L~~~l------------------------- 90 (157)
T cd01858 68 Y-------------PTI--------AFHASINNPFGKG-----------SLIQLL------------------------- 90 (157)
T ss_pred C-------------cEE--------EEEeeccccccHH-----------HHHHHH-------------------------
Confidence 0 000 1456777766543 111111
Q ss_pred HhhhcC--CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCC
Q psy15088 390 LADMMD--TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKG 467 (1291)
Q Consensus 390 ~~~~~~--~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~ 467 (1291)
.++++ ....-.+|+++|.+|+|||||+|+|++..+..+...+ |+|+....+.
T Consensus 91 -~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-----------------g~T~~~~~~~-------- 144 (157)
T cd01858 91 -RQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-----------------GETKVWQYIT-------- 144 (157)
T ss_pred -HHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-----------------CeeEeEEEEE--------
Confidence 11110 0112247999999999999999999987766555444 7776644322
Q ss_pred CCeEEEEEeCCCc
Q psy15088 468 KNYLMNIFDTPAS 480 (1291)
Q Consensus 468 ~~~~~~liDTpGh 480 (1291)
-+..+.|+||||.
T Consensus 145 ~~~~~~liDtPGi 157 (157)
T cd01858 145 LMKRIYLIDCPGV 157 (157)
T ss_pred cCCCEEEEECcCC
Confidence 1234789999995
No 117
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=1.6e-14 Score=164.59 Aligned_cols=94 Identities=33% Similarity=0.405 Sum_probs=82.5
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
+.=|++||+|++..-+.++..+ ..++ .+.+||||||||+||.-++.+++..|.|+||||||..|+..||
T Consensus 49 MdiERERGITIKaq~v~l~Yk~--------~~g~---~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQT 117 (603)
T COG0481 49 MDIERERGITIKAQAVRLNYKA--------KDGE---TYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 117 (603)
T ss_pred hhhHhhcCceEEeeEEEEEEEe--------CCCC---EEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHH
Confidence 3359999999998777665332 1122 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..-..++-..+..+|-|+||+|++.
T Consensus 118 lAN~YlAle~~LeIiPViNKIDLP~ 142 (603)
T COG0481 118 LANVYLALENNLEIIPVLNKIDLPA 142 (603)
T ss_pred HHHHHHHHHcCcEEEEeeecccCCC
Confidence 9999999999999999999999986
No 118
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.49 E-value=8.1e-14 Score=168.45 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=113.4
Q ss_pred hhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEE
Q psy15088 167 GFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFV 246 (1291)
Q Consensus 167 GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vV 246 (1291)
.|.+|+..+-+.+|+.||+++++....+... ++.++|||||||.+|..++..++..+|++||||
T Consensus 53 s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVV 116 (446)
T PTZ00141 53 SFKYAWVLDKLKAERERGITIDIALWKFETP----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVV 116 (446)
T ss_pred chhhhhhhcCChHHHhcCEeEEeeeEEEccC----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEE
Confidence 3677777788889999999999866555433 668999999999999999999999999999999
Q ss_pred ECCCCC-------chhHHHHHHHHHHcCCcE-EEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCc
Q psy15088 247 DAAEGV-------MLNTERLLKHAVQEKMAI-TLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDG 318 (1291)
Q Consensus 247 D~~~g~-------~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 318 (1291)
|+.+|+ .+||++++.+++..|+|. |+||||||+...+ ....+|.++.+++...+..+|+...
T Consensus 117 da~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~------~~~~~~~~i~~~i~~~l~~~g~~~~---- 186 (446)
T PTZ00141 117 ASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVN------YSQERYDEIKKEVSAYLKKVGYNPE---- 186 (446)
T ss_pred EcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccch------hhHHHHHHHHHHHHHHHHhcCCCcc----
Confidence 999998 589999999999999985 5789999964211 1225788899999999998887321
Q ss_pred cccccccchhhcccCcccccCcccccCC
Q psy15088 319 DEEMGDSQAVVLHEDKRYYPTAVEVFGP 346 (1291)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~~~sa~~~~g~ 346 (1291)
..++ ++.|+.+|.|.
T Consensus 187 ------~~~~-------ipiSa~~g~ni 201 (446)
T PTZ00141 187 ------KVPF-------IPISGWQGDNM 201 (446)
T ss_pred ------cceE-------EEeecccCCCc
Confidence 1223 67888876554
No 119
>KOG0461|consensus
Probab=99.47 E-value=3.6e-13 Score=147.34 Aligned_cols=113 Identities=15% Similarity=0.216 Sum_probs=85.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc----cCCCCeEEEEEe
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD----VKGKNYLMNIFD 476 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~----~~~~~~~~~liD 476 (1291)
-|++|+||+|+|||||+.+|..-. .....|-+++.++||+|.|..-.++.-.. .+++.-.++|+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~-----------STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELG-----------STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhc-----------cchhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 599999999999999999985321 23357889999999999998765554321 345667889999
Q ss_pred CCCcc-ccc-ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccc
Q psy15088 477 TPASP-VTL-LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 477 TpGh~-~~~-~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
+|||+ ..| -+.++.-.|.+++|||+..|.+.||.+.+-.......+++
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klv 126 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLV 126 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceE
Confidence 99996 344 3344556689999999999999999887655554444444
No 120
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.47 E-value=1.6e-13 Score=165.79 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=106.1
Q ss_pred hhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEE
Q psy15088 166 QGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLF 245 (1291)
Q Consensus 166 ~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~v 245 (1291)
..|.+|+..+-+.+|+.||+++++....+... ++.+++||||||.+|..++..+++.+|++|+|
T Consensus 52 ~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlV 115 (447)
T PLN00043 52 RSFKYAWVLDKLKAERERGITIDIALWKFETT----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115 (447)
T ss_pred cchhhhhhhcCCHhHHhcCceEEEEEEEecCC----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEE
Confidence 35888888888889999999999876655544 66899999999999999999999999999999
Q ss_pred EECCCCC-------chhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy15088 246 VDAAEGV-------MLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLID 312 (1291)
Q Consensus 246 VD~~~g~-------~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 312 (1291)
||+.+|. .+||++++.+++..++| +|+|+||||+... .....++.++.+++...+..+|+.
T Consensus 116 Vda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~------~~~~~~~~~i~~ei~~~l~~~g~~ 184 (447)
T PLN00043 116 IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP------KYSKARYDEIVKEVSSYLKKVGYN 184 (447)
T ss_pred EEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch------hhhHHHHHHHHHHHHHHHHHcCCC
Confidence 9999984 38999999999999997 5778999997621 122357889999999999998874
No 121
>KOG0460|consensus
Probab=99.47 E-value=1.3e-13 Score=151.12 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=96.5
Q ss_pred cccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC
Q psy15088 172 TREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG 251 (1291)
Q Consensus 172 ~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g 251 (1291)
.+.+| +|+.||||++...+.+.+. .+++--+|||||.||.++|+.+....|++|+||.|.+|
T Consensus 92 ID~AP--EEkaRGITIn~aHveYeTa----------------~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG 153 (449)
T KOG0460|consen 92 IDKAP--EEKARGITINAAHVEYETA----------------KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG 153 (449)
T ss_pred hhcCh--hhhhccceEeeeeeeeecc----------------ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC
Confidence 34566 8999999999999999888 45666789999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCcE-EEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15088 252 VMLNTERLLKHAVQEKMAI-TLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDD 313 (1291)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 313 (1291)
.+|||++++-++|+-|++. ++|+||.|.... + | .++-+--++..+++.+||+-
T Consensus 154 ~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d-----~-e---~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 154 PMPQTREHLLLARQVGVKHIVVFINKVDLVDD-----P-E---MLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred CCcchHHHHHHHHHcCCceEEEEEecccccCC-----H-H---HHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999995 556999998731 1 1 22233347888999999843
No 122
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.44 E-value=4.9e-13 Score=124.18 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEE
Q psy15088 791 GRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVL 870 (1291)
Q Consensus 791 ~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~ 870 (1291)
+|+.++|||+..+++.|+ ++|+|||||+|++||.|++.. ...+++.+|+.++|.+..++++|+|||||+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~----------~~~~~v~~l~~~~g~~~~~v~~~~aGdI~a 70 (85)
T cd03690 2 SELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR----------EEKIKITELRVFNNGEVVTADTVTAGDIAI 70 (85)
T ss_pred CCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC----------CcEEEeceeEEEeCCCeEECcEECCCCEEE
Confidence 689999999999998765 899999999999999998754 235789999999999999999999999999
Q ss_pred EccCCCcccccceee
Q psy15088 871 IEGIDQPIVKTSTIT 885 (1291)
Q Consensus 871 I~Gl~~~~~k~~Tl~ 885 (1291)
+.|+++..+ ++|+.
T Consensus 71 i~gl~~~~~-Gdtl~ 84 (85)
T cd03690 71 LTGLKGLRV-GDVLG 84 (85)
T ss_pred EECCCCCcC-ccccC
Confidence 999988654 45553
No 123
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.44 E-value=3.9e-13 Score=146.52 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=88.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc----------------
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD---------------- 464 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------------- 464 (1291)
+||||+||.|||||||+++|.. .++|..+.|++||+|+++....+.|..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~---------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG---------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC---------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 4999999999999999999942 236888999999999999988887740
Q ss_pred ------------cCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-cchhhHhhHHHHHhhcCccchhhhh
Q psy15088 465 ------------VKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-WDIHVRKFSKKAAHASAQRSFVEFV 529 (1291)
Q Consensus 465 ------------~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-~~~qt~~~~~~~~~~~~~~~fv~fi 529 (1291)
..+..+.++|+|||||..+. .+.++..+|++++|+|+..+ ...++..++..+...++++++ .++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~ii-ivv 144 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHII-IVQ 144 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEE-EEE
Confidence 01123899999999997553 55666678999999999874 678888887777666765532 255
Q ss_pred h
Q psy15088 530 L 530 (1291)
Q Consensus 530 l 530 (1291)
|
T Consensus 145 N 145 (203)
T cd01888 145 N 145 (203)
T ss_pred E
Confidence 5
No 124
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.44 E-value=1.3e-13 Score=137.08 Aligned_cols=76 Identities=32% Similarity=0.493 Sum_probs=68.3
Q ss_pred hhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 118 SKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 118 ~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
+.+||+...++.+|+++|...++|+|+|.+.+ ..++++++++|.+||+||+.+|||++||++||+|.|.++.+|..
T Consensus 22 ~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~----~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~ 97 (120)
T PF03764_consen 22 RQYGGKRQFAKVILRVEPLEGGGNIFVDETEG----GQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHEV 97 (120)
T ss_dssp EECTSSEEEEEEEEEEEETSTSSEEEEESSST----TSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-TT
T ss_pred HHhCCCCceEEEEEEEeecccCCceeeecccc----ccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecCC
Confidence 35799999999999999988779999999864 56789999999999999999999999999999999999999985
No 125
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.42 E-value=9.7e-13 Score=124.50 Aligned_cols=85 Identities=49% Similarity=0.713 Sum_probs=73.6
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
++++|||+.++++.+++++|+|||||+|++||.|++.+++++.++.+.....+|++||+++|++..++++|+|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 46899999999844567999999999999999999998776654444456688999999999999999999999999999
Q ss_pred cCCCc
Q psy15088 873 GIDQP 877 (1291)
Q Consensus 873 Gl~~~ 877 (1291)
|+++.
T Consensus 81 g~~~~ 85 (93)
T cd03700 81 GLDQL 85 (93)
T ss_pred CCccC
Confidence 99773
No 126
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.42 E-value=3.8e-12 Score=157.48 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=75.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC-------------
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK------------- 466 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~------------- 466 (1291)
..-|+|+||+|||||||+++|.+..-. .. ...|+|.......+.+....
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~----------------e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~ 65 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KR----------------EAGGITQHIGATEIPMDVIEGICGDLLKKFKIR 65 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cc----------------cCCceecccCeeEeeeccccccccccccccccc
Confidence 447999999999999999999876321 11 11234443222222221000
Q ss_pred CCCeEEEEEeCCCcccccc--cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 GKNYLMNIFDTPASPVTLL--LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~~--l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+...+.|+|||||..+.. .+....+|++++|+|+..|+.+|+..++..+...++|.++ ++|
T Consensus 66 ~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIV--v~N 129 (590)
T TIGR00491 66 LKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVV--AAN 129 (590)
T ss_pred cccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEE--EEE
Confidence 0112389999999976553 3345688999999999999999999988888778888654 666
No 127
>KOG0458|consensus
Probab=99.42 E-value=4.4e-13 Score=157.48 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=116.5
Q ss_pred hhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhh
Q psy15088 158 GSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMR 237 (1291)
Q Consensus 158 ~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~ 237 (1291)
++.++.-...|.+||..+--.+|+.|||+.++.-..|.+. .+.++|||+|||.||..+|+.++.
T Consensus 214 ~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~----------------~~~~tliDaPGhkdFi~nmi~g~s 277 (603)
T KOG0458|consen 214 RESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK----------------SKIVTLIDAPGHKDFIPNMISGAS 277 (603)
T ss_pred HHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC----------------ceeEEEecCCCccccchhhhcccc
Confidence 5567777777999999999999999999999988888866 568999999999999999999999
Q ss_pred hcCcEEEEEECCCC-------CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHH-HH
Q psy15088 238 LCDGVVLFVDAAEG-------VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLL-RY 308 (1291)
Q Consensus 238 ~~D~~l~vVD~~~g-------~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 308 (1291)
.||+++|||||..| ...||++|+..+|..|+. .|++|||||... .-.++|++|...++.++ ..
T Consensus 278 qaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~--------Wsq~RF~eIk~~l~~fL~~~ 349 (603)
T KOG0458|consen 278 QADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS--------WSQDRFEEIKNKLSSFLKES 349 (603)
T ss_pred ccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC--------ccHHHHHHHHHHHHHHHHHh
Confidence 99999999999976 478999999999999998 566699999874 34578999999999999 78
Q ss_pred hcCCC
Q psy15088 309 LLIDD 313 (1291)
Q Consensus 309 ~~~~~ 313 (1291)
.||.+
T Consensus 350 ~gf~e 354 (603)
T KOG0458|consen 350 CGFKE 354 (603)
T ss_pred cCccc
Confidence 88844
No 128
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.41 E-value=1.1e-12 Score=121.59 Aligned_cols=82 Identities=24% Similarity=0.234 Sum_probs=71.3
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
++++|||+..+++.|. ++|+|||||+|++||+|++... ...++|++|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~---------~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT---------GKKERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC---------CCEEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 4789999999998654 9999999999999999998763 24578999999999999999999999999999
Q ss_pred cCCCcccccceee
Q psy15088 873 GIDQPIVKTSTIT 885 (1291)
Q Consensus 873 Gl~~~~~k~~Tl~ 885 (1291)
|+++..+ ++|++
T Consensus 71 gl~~~~~-Gdtl~ 82 (83)
T cd04092 71 GLKQTRT-GDTLV 82 (83)
T ss_pred CCCCccc-CCEEe
Confidence 9987543 56765
No 129
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.41 E-value=6.1e-13 Score=162.08 Aligned_cols=178 Identities=18% Similarity=0.182 Sum_probs=125.5
Q ss_pred CeEEEeccCCCCCeEEEcCCCCC--cccccchhhHH-HHHHh-----hhccccccCCCCCcccccceeEEecccccCCCc
Q psy15088 128 RSIWAFGPEVTGPNILVDDTLPS--EVDKGLLGSVK-DSIVQ-----GFQWGTREGPLCEEPIRNVKFKIREGNLNSSPS 199 (1291)
Q Consensus 128 ~~i~~fgp~~~g~Nil~~~t~~~--~~~~~~~~~~~-~si~~-----GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as 199 (1291)
-+|+-.|+-+.|---|++.-... ..+...+..++ ++=.. .|.+|+..+-+.+|+.||+++++....+...
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~-- 105 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE-- 105 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC--
Confidence 57888898888754444422100 00000011111 12112 3778888889999999999999876666544
Q ss_pred cccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc-EEEEEEccC
Q psy15088 200 IYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA-ITLCVNKID 278 (1291)
Q Consensus 200 ~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD 278 (1291)
++++++||||||.+|..++..+++.+|++|||||+.+|+.+||++++..+...+++ +|+|+||||
T Consensus 106 --------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 106 --------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred --------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 56899999999999999999999999999999999999999999999999998865 678999999
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 279 RLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
+... + ...+.++.+++..++..+++.. ..++ ++.||.+|.|.+
T Consensus 172 ~~~~----~----~~~~~~i~~~l~~~~~~~~~~~-----------~~~i-------ipvSA~~g~ni~ 214 (474)
T PRK05124 172 LVDY----S----EEVFERIREDYLTFAEQLPGNL-----------DIRF-------VPLSALEGDNVV 214 (474)
T ss_pred cccc----h----hHHHHHHHHHHHHHHHhcCCCC-----------CceE-------EEEEeecCCCcc
Confidence 8631 1 1245566667766666655311 1112 678998876654
No 130
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.41 E-value=6.1e-13 Score=143.69 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=89.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc---------cCCCCeEE
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD---------VKGKNYLM 472 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------~~~~~~~~ 472 (1291)
||+++||+|+|||||+++|+... +...+|....|++||+|++....++.+.. ..++++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 89999999999999999998652 23457888999999999999988887731 12347899
Q ss_pred EEEeCCCcccc-c-ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 473 NIFDTPASPVT-L-LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 473 ~liDTpGh~~~-~-~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++|||||..+ + .+.++..+|++++|+|+..+.+.++...+..+...++|.++ ++|
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~ii--v~N 128 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIV--VLN 128 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEE--EEE
Confidence 99999999643 2 33455677999999999998877877666555555666554 555
No 131
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.7e-13 Score=150.45 Aligned_cols=88 Identities=24% Similarity=0.295 Sum_probs=78.8
Q ss_pred CCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH
Q psy15088 178 CEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE 257 (1291)
Q Consensus 178 ~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~ 257 (1291)
.=|+.|||.+.-+- ++++|. ++.|||+|||||.||++++.+.|..+|.||+||||..|+.+||.
T Consensus 60 ~iEkqRGISVtsSV--------MqF~Y~--------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~ 123 (528)
T COG4108 60 EIEKQRGISVTSSV--------MQFDYA--------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL 123 (528)
T ss_pred HHHHhcCceEEeeE--------EEeccC--------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH
Confidence 34899999997444 444443 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEEccCccc
Q psy15088 258 RLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 258 ~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+++.||-.++|++-||||+||..
T Consensus 124 KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 124 KLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred HHHHHHhhcCCceEEEeecccccc
Confidence 999999999999999999999985
No 132
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.39 E-value=1.5e-12 Score=128.67 Aligned_cols=112 Identities=23% Similarity=0.266 Sum_probs=83.2
Q ss_pred EEEeeeeccccee--eeec--CCcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCC
Q psy15088 981 FCETVVETSSLKC--FAET--PNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGP 1056 (1291)
Q Consensus 981 yrEti~~~~~~~~--~~~s--~nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp 1056 (1291)
|||||+++++... ...+ ..++++++++++|++++.+.
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~--------------------------------------- 41 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGV--------------------------------------- 41 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCCCc---------------------------------------
Confidence 8999998865322 2222 22468999999999765221
Q ss_pred CCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHH
Q psy15088 1057 EVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAY 1136 (1291)
Q Consensus 1057 ~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~ 1136 (1291)
.+++..... .+.++++++|.+||++|+++|||||+||+||+|+|.++.+|.+ ++..+++.+++++||+
T Consensus 42 ------~~~~~~~~~----~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~ 109 (116)
T cd01680 42 ------RVVDPVDEE----LLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFE 109 (116)
T ss_pred ------EEEEecCCC----cCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 122211000 1345677899999999999999999999999999999999865 3456789999999999
Q ss_pred HHHHhCC
Q psy15088 1137 SAFLMAT 1143 (1291)
Q Consensus 1137 ~a~l~a~ 1143 (1291)
+||++|.
T Consensus 110 ~al~~a~ 116 (116)
T cd01680 110 SAAQKAG 116 (116)
T ss_pred HHHHhcC
Confidence 9998864
No 133
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.38 E-value=8.6e-13 Score=164.00 Aligned_cols=130 Identities=27% Similarity=0.383 Sum_probs=101.5
Q ss_pred CCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch
Q psy15088 175 GPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML 254 (1291)
Q Consensus 175 GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~ 254 (1291)
+-...|+.||+++......+... +++|+|||||||.||..++..+++.+|++|||||+.+|+.+
T Consensus 40 D~~~~ErerGiTI~~~~~~v~~~----------------~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~ 103 (594)
T TIGR01394 40 DSNDLERERGITILAKNTAIRYN----------------GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMP 103 (594)
T ss_pred cCchHHHhCCccEEeeeEEEEEC----------------CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcH
Confidence 33457999999998655444322 56899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCc
Q psy15088 255 NTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDK 334 (1291)
Q Consensus 255 ~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 334 (1291)
||+.+++++.+.++|+|+|+||+|+.. .++.++.+++...+..++..+.. ...++
T Consensus 104 qT~~~l~~a~~~~ip~IVviNKiD~~~-----------a~~~~v~~ei~~l~~~~g~~~e~--------l~~pv------ 158 (594)
T TIGR01394 104 QTRFVLKKALELGLKPIVVINKIDRPS-----------ARPDEVVDEVFDLFAELGADDEQ--------LDFPI------ 158 (594)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCC-----------cCHHHHHHHHHHHHHhhcccccc--------ccCcE------
Confidence 999999999999999999999999863 12334556666666666543211 01223
Q ss_pred ccccCcccccCC
Q psy15088 335 RYYPTAVEVFGP 346 (1291)
Q Consensus 335 ~~~~sa~~~~g~ 346 (1291)
++.||.++++.
T Consensus 159 -l~~SA~~g~~~ 169 (594)
T TIGR01394 159 -VYASGRAGWAS 169 (594)
T ss_pred -EechhhcCccc
Confidence 78899998764
No 134
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.38 E-value=1.6e-12 Score=142.24 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=103.4
Q ss_pred cccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC
Q psy15088 172 TREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG 251 (1291)
Q Consensus 172 ~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g 251 (1291)
+..+-..+|..||++++.....++.. +++|+|+|||||.+|..++..+++.+|++|+|||+.+|
T Consensus 50 ~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 50 LLVDGLQAEREQGITIDVAYRYFSTP----------------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred eeccCChhhhcCCcCeecceeEEecC----------------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 33444558999999999866655433 56899999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhc
Q psy15088 252 VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVL 330 (1291)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 330 (1291)
+..+++.++.+++..++| +|+|+||+|+... . ...+..+.++++.++..+++... ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~----~----~~~~~~i~~~~~~~~~~~~~~~~------------~i-- 171 (208)
T cd04166 114 VLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY----S----EEVFEEIVADYLAFAAKLGIEDI------------TF-- 171 (208)
T ss_pred ccHhHHHHHHHHHHcCCCcEEEEEEchhcccC----C----HHHHHHHHHHHHHHHHHcCCCCc------------eE--
Confidence 999999999999888876 6778999998631 1 12455667777777777775221 11
Q ss_pred ccCcccccCcccccCCC
Q psy15088 331 HEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 331 ~~~~~~~~sa~~~~g~~ 347 (1291)
++.||.++.|..
T Consensus 172 -----i~iSA~~g~ni~ 183 (208)
T cd04166 172 -----IPISALDGDNVV 183 (208)
T ss_pred -----EEEeCCCCCCCc
Confidence 678999987764
No 135
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.38 E-value=1.3e-12 Score=144.16 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=109.8
Q ss_pred hccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEE
Q psy15088 168 FQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247 (1291)
Q Consensus 168 F~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD 247 (1291)
|.+|+..+-+.+|+.||++.+.....+... +++|+++|||||.+|..++..+++.+|++|+|||
T Consensus 46 ~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----------------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvD 109 (219)
T cd01883 46 FKYAWVLDTLKEERERGVTIDVGLAKFETE----------------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVD 109 (219)
T ss_pred hhHHhhhcCCHHHhhCccCeecceEEEeeC----------------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEE
Confidence 555666777889999999999877766443 6689999999999999999999999999999999
Q ss_pred CCC-------CCchhHHHHHHHHHHcC-CcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCcc
Q psy15088 248 AAE-------GVMLNTERLLKHAVQEK-MAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGD 319 (1291)
Q Consensus 248 ~~~-------g~~~~~~~~~~~l~~~~-~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 319 (1291)
+.+ |+..++.+++..++..+ +|+|+|+||+|+...+ ..-..+.++.++++..+..+++...
T Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~------~~~~~~~~i~~~l~~~l~~~~~~~~----- 178 (219)
T cd01883 110 ARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN------WSEERYDEIKKELSPFLKKVGYNPK----- 178 (219)
T ss_pred CCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccccc------ccHHHHHHHHHHHHHHHHHcCCCcC-----
Confidence 998 67889999999988888 4677799999987311 0113456677778877877765321
Q ss_pred ccccccchhhcccCcccccCcccccCCC
Q psy15088 320 EEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 320 ~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.+|.|.+
T Consensus 179 -----~~~i-------i~iSA~tg~gi~ 194 (219)
T cd01883 179 -----DVPF-------IPISGLTGDNLI 194 (219)
T ss_pred -----CceE-------EEeecCcCCCCC
Confidence 1223 788999988875
No 136
>PLN03126 Elongation factor Tu; Provisional
Probab=99.38 E-value=1.4e-12 Score=158.04 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=97.0
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-+.+|+.||+++++....++.. ++++++||||||.+|..++..++..+|++|+|||+.+|+.
T Consensus 119 ~D~~~~Er~rGiTi~~~~~~~~~~----------------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~ 182 (478)
T PLN03126 119 IDAAPEERARGITINTATVEYETE----------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 182 (478)
T ss_pred ccCChhHHhCCeeEEEEEEEEecC----------------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 445678999999999887777654 5689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLID 312 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 312 (1291)
+||++++.++...++| +|+++||||+.. .++ .++.+.+++..++..+|+.
T Consensus 183 ~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~---~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 183 PQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEE---LLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecccccC------HHH---HHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999 667899999853 122 3455667888889888873
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.38 E-value=5.7e-13 Score=144.15 Aligned_cols=123 Identities=26% Similarity=0.276 Sum_probs=98.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
++|||+|+|++|+|||||+++|++..+....... ...+.+|+.+.|.++|+|+......+.+ +++.++++|||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--~~~~~~~~~~~e~~~g~t~~~~~~~~~~-----~~~~~~l~Dtp 73 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE--VEERVMDSNDLERERGITILAKNTAVTY-----KDTKINIVDTP 73 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc--ccccccccchhHHhcccccccceeEEEE-----CCEEEEEEECC
Confidence 4799999999999999999999986554433221 1246789999999999999988888877 78999999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||..+. .......+|++++|+|+..+..+++..++..+...++|.++ ++|
T Consensus 74 G~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~ii--v~N 125 (194)
T cd01891 74 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIV--VIN 125 (194)
T ss_pred CcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEE--EEE
Confidence 997654 23345578999999999988878888777777777888765 566
No 138
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.38 E-value=4e-12 Score=130.28 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=47.2
Q ss_pred HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc--CCcEEEEEEccCcc
Q psy15088 230 DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE--KMAITLCVNKIDRL 280 (1291)
Q Consensus 230 ~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~--~~~~ilvvNKiD~~ 280 (1291)
.++..++..||++|+|+|++.+...++..+.+++.+. ++|+++|+||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5788999999999999999999999999999999887 89999999999975
No 139
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.36 E-value=3.3e-12 Score=118.35 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=71.2
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
++++|||+..+++.|. ++|+|||||+|++||.|++.+. ...++|.+|+.++|.+..++++++||||+++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~~---------~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNSTK---------GKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECCC---------CcEEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 4689999999998765 9999999999999999998762 34678999999999999999999999999999
Q ss_pred cCCCcccccceee
Q psy15088 873 GIDQPIVKTSTIT 885 (1291)
Q Consensus 873 Gl~~~~~k~~Tl~ 885 (1291)
|+++..+ ++|++
T Consensus 71 g~~~~~~-Gdtl~ 82 (83)
T cd04088 71 GLKDTAT-GDTLC 82 (83)
T ss_pred CCCCCcc-CCEee
Confidence 9987543 55654
No 140
>KOG3079|consensus
Probab=99.36 E-value=9.5e-13 Score=134.61 Aligned_cols=101 Identities=45% Similarity=0.846 Sum_probs=86.2
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
+|+||||||+.+|+..|...+.. +..+++||||+++++++||+.|+.... |.||+.+++++|+.+|+..+.||+.||
T Consensus 89 ~fLIDGyPR~~~q~~~fe~~i~~--~~~fvl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~t~Pvi~~~ 165 (195)
T KOG3079|consen 89 GFLIDGYPRNVDQLVEFERKIQG--DPDFVLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKSTLPVIEYY 165 (195)
T ss_pred eEEecCCCCChHHHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHcchHHHHHH
Confidence 59999999999999999988864 356789999999999999999987544 999999999999999999999999999
Q ss_pred cchhhhhhhchhH---HHHHHHHhhCC
Q psy15088 697 EAKNLVKRFNAEK---SLVEMCVKHIP 720 (1291)
Q Consensus 697 a~k~~~~~~~g~~---~LLD~Iv~~lP 720 (1291)
..++++.++++.. .++.-++..++
T Consensus 166 e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 166 EKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred HccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 9999888887643 34445554443
No 141
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.36 E-value=1.8e-12 Score=164.35 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=127.2
Q ss_pred eEEEeccCCCCCeEEEcCCCCC--cccccchhhH-HHHHHh-----hhccccccCCCCCcccccceeEEecccccCCCcc
Q psy15088 129 SIWAFGPEVTGPNILVDDTLPS--EVDKGLLGSV-KDSIVQ-----GFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSI 200 (1291)
Q Consensus 129 ~i~~fgp~~~g~Nil~~~t~~~--~~~~~~~~~~-~~si~~-----GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~ 200 (1291)
+|.-+|+.+.|.--|++.-... ..+...+..+ +++... .|.+|+..+-+.+|+.||+|+++....+...
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~--- 102 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP--- 102 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC---
Confidence 5778898888854344321100 0000011112 233333 4888888888999999999999886666544
Q ss_pred ccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc-EEEEEEccCc
Q psy15088 201 YCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDR 279 (1291)
Q Consensus 201 ~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~ 279 (1291)
+++++|||||||.+|..++..++..+|++|||||+.+|+.+||++++.+++..+++ +|+|+||+|+
T Consensus 103 -------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 103 -------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred -------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccc
Confidence 56899999999999999999999999999999999999999999999999999865 6778999998
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 280 LMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
... -...+..+.+++..++..+++.+. ++ ++.||.+|.|.+
T Consensus 170 ~~~--------~~~~~~~i~~~i~~~~~~~~~~~~------------~i-------ipiSA~~g~ni~ 210 (632)
T PRK05506 170 VDY--------DQEVFDEIVADYRAFAAKLGLHDV------------TF-------IPISALKGDNVV 210 (632)
T ss_pred ccc--------hhHHHHHHHHHHHHHHHHcCCCCc------------cE-------EEEecccCCCcc
Confidence 631 112456677777777777776321 11 678999877654
No 142
>CHL00071 tufA elongation factor Tu
Probab=99.36 E-value=2.8e-12 Score=154.26 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=95.0
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-+.+|+.||+|+++....++.. +++|+|||||||.+|..++..++..+|++++|||+.+|+.
T Consensus 50 ~d~~~~e~~rg~T~~~~~~~~~~~----------------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~ 113 (409)
T CHL00071 50 IDSAPEEKARGITINTAHVEYETE----------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM 113 (409)
T ss_pred ccCChhhhcCCEeEEccEEEEccC----------------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc
Confidence 445678999999999876555443 5688999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+||++++.++.+.++| +|+|+||+|+... . ..++.+.+++...+..+++
T Consensus 114 ~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~------~---~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 114 PQTKEHILLAKQVGVPNIVVFLNKEDQVDD------E---ELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEccCCCCH------H---HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999 6688999998631 1 2344566788888888776
No 143
>KOG0464|consensus
Probab=99.34 E-value=1.6e-13 Score=152.45 Aligned_cols=89 Identities=33% Similarity=0.443 Sum_probs=83.0
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
|+-|+.||+|+. ++.++++|+++ ++||||||||+||.-++++.++..|+++.|+|+..|+.+||
T Consensus 80 la~erergitiq--------saav~fdwkg~--------rinlidtpghvdf~leverclrvldgavav~dasagve~qt 143 (753)
T KOG0464|consen 80 LAIERERGITIQ--------SAAVNFDWKGH--------RINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQT 143 (753)
T ss_pred HHHHHhcCceee--------eeeeecccccc--------eEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccce
Confidence 457999999996 67788888766 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+|+++.+.++|.+.|+||||...
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhh
Confidence 9999999999999999999999875
No 144
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.34 E-value=3.8e-12 Score=144.17 Aligned_cols=95 Identities=28% Similarity=0.335 Sum_probs=83.3
Q ss_pred ccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCC
Q psy15088 171 GTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAE 250 (1291)
Q Consensus 171 a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~ 250 (1291)
++..+-..+|..||++++.....+.-. ++++++||||||.+|..++..+++.+|++|||||+.+
T Consensus 36 ~~~~D~~~~E~~rgiti~~~~~~~~~~----------------~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 36 GATMDFMEQERERGITIQSAATTCFWK----------------DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred ccccCCCccccCCCcCeeccEEEEEEC----------------CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCC
Confidence 344556678999999998655554333 5689999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 251 GVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 251 g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
|+.++|+.+++++++.++|+++|+||+|+..
T Consensus 100 g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 100 GVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 9999999999999999999999999999874
No 145
>PRK12736 elongation factor Tu; Reviewed
Probab=99.34 E-value=4.3e-12 Score=151.95 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=94.3
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
..-+.+|..||+|+++....+... ++.+++||||||.+|..++..++..+|++|||||+.+|+.
T Consensus 50 ~d~~~~E~~rg~T~~~~~~~~~~~----------------~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~ 113 (394)
T PRK12736 50 IDAAPEEKERGITINTAHVEYETE----------------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 113 (394)
T ss_pred hcCCHHHHhcCccEEEEeeEecCC----------------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 445669999999999876665443 5688999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+||++++.+++..++| +|+|+||+|+.. .++ .++.+.+++...+..+++
T Consensus 114 ~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~---~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 114 PQTREHILLARQVGVPYLVVFLNKVDLVD------DEE---LLELVEMEVRELLSEYDF 163 (394)
T ss_pred hhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHH---HHHHHHHHHHHHHHHhCC
Confidence 9999999999999999 567899999863 112 334455678888887776
No 146
>PRK10218 GTP-binding protein; Provisional
Probab=99.33 E-value=2.7e-12 Score=159.33 Aligned_cols=130 Identities=24% Similarity=0.293 Sum_probs=101.0
Q ss_pred CCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch
Q psy15088 175 GPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML 254 (1291)
Q Consensus 175 GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~ 254 (1291)
+-...|+.+|+++......+... +++|+++|||||.+|..++..+++.+|++|||||+.+|+.+
T Consensus 44 D~~~~E~erGiTi~~~~~~i~~~----------------~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~ 107 (607)
T PRK10218 44 DSNDLEKERGITILAKNTAIKWN----------------DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP 107 (607)
T ss_pred ccccccccCceEEEEEEEEEecC----------------CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH
Confidence 33447999999998766555333 56899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCc
Q psy15088 255 NTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDK 334 (1291)
Q Consensus 255 ~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 334 (1291)
||+.+++.+.+.++|+|+|+||+|+... ++.++++++..++..++..+ .....++
T Consensus 108 qt~~~l~~a~~~gip~IVviNKiD~~~a-----------~~~~vl~ei~~l~~~l~~~~--------~~~~~PV------ 162 (607)
T PRK10218 108 QTRFVTKKAFAYGLKPIVVINKVDRPGA-----------RPDWVVDQVFDLFVNLDATD--------EQLDFPI------ 162 (607)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcCCCCC-----------chhHHHHHHHHHHhccCccc--------cccCCCE------
Confidence 9999999999999999999999998741 23344555555555444311 0112344
Q ss_pred ccccCcccccCC
Q psy15088 335 RYYPTAVEVFGP 346 (1291)
Q Consensus 335 ~~~~sa~~~~g~ 346 (1291)
++.||.+|++.
T Consensus 163 -i~~SA~~G~~~ 173 (607)
T PRK10218 163 -VYASALNGIAG 173 (607)
T ss_pred -EEeEhhcCccc
Confidence 78899998864
No 147
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.33 E-value=8e-12 Score=137.30 Aligned_cols=128 Identities=48% Similarity=0.691 Sum_probs=106.2
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-..+|+.+|+++......++-.. .... ++.++++|||||.+|...+..+++.+|++|+|+|+.+|..
T Consensus 41 ~d~~~~e~~~giti~~~~~~~~~~~--------~~~~---~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~ 109 (213)
T cd04167 41 TDIRKDEQERGISIKSSPISLVLPD--------SKGK---SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT 109 (213)
T ss_pred CCCCHHHHHcCccccccceeEEEEc--------CCCC---EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC
Confidence 3445578889998876555443221 0011 3479999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLID 312 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 312 (1291)
.+++.+++.+...++|+++|+||+|+...+..+...+.+..+.++++++|..+..++++
T Consensus 110 ~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~ 168 (213)
T cd04167 110 SNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTT 168 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998889999999999999876777778889999999999999999988763
No 148
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.30 E-value=1.4e-11 Score=128.35 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=93.3
Q ss_pred CcEEEEEECCCCCchhHHHHH-HHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCc
Q psy15088 240 DGVVLFVDAAEGVMLNTERLL-KHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDG 318 (1291)
Q Consensus 240 D~~l~vVD~~~g~~~~~~~~~-~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 318 (1291)
|.+|+|+|++++....+..+. ..++..++|+|+|+||+|+... ++ +.+++.. +...+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~------~~----~~~~~~~----~~~~~~------- 59 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK------EV----LRKWLAY----LRHSYP------- 59 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH------HH----HHHHHHH----HHhhCC-------
Confidence 789999999998888877777 5677789999999999998531 11 1111111 111111
Q ss_pred cccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCcc
Q psy15088 319 DEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPH 398 (1291)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1291)
. ..++.||.++.|.+ .+.+.+.+....+. ..+..+ ....
T Consensus 60 -----~---------~ii~vSa~~~~gi~-----------~L~~~i~~~~~~~~--------------~~~~~~--~~~~ 98 (155)
T cd01849 60 -----T---------IPFKISATNGQGIE-----------KKESAFTKQTNSNL--------------KSYAKD--GKLK 98 (155)
T ss_pred -----c---------eEEEEeccCCcChh-----------hHHHHHHHHhHHHH--------------HHHHhc--cccc
Confidence 0 11567888877764 12111111100000 000000 0012
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+++++|++|+|||||+|+|+......+... +|+|+....+.+ +..+.++|||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-----------------~~~t~~~~~~~~--------~~~~~liDtP 153 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-----------------PGTTTSQQEVKL--------DNKIKLLDTP 153 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCC-----------------CCcccceEEEEe--------cCCEEEEECC
Confidence 346899999999999999999998765443333 388887665432 2459999999
Q ss_pred Cc
Q psy15088 479 AS 480 (1291)
Q Consensus 479 Gh 480 (1291)
|.
T Consensus 154 G~ 155 (155)
T cd01849 154 GI 155 (155)
T ss_pred CC
Confidence 95
No 149
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.30 E-value=6.4e-12 Score=152.44 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=111.4
Q ss_pred hccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEE
Q psy15088 168 FQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247 (1291)
Q Consensus 168 F~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD 247 (1291)
|.+|+..+-+.+|+.||+|+++....+... +++|+++|||||.+|..++..+++.+|++|||||
T Consensus 53 ~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvD 116 (425)
T PRK12317 53 FKFAWVMDRLKEERERGVTIDLAHKKFETD----------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVA 116 (425)
T ss_pred cchhhhhccCHhHhhcCccceeeeEEEecC----------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEE
Confidence 666666777779999999999988766554 5689999999999999999999999999999999
Q ss_pred CCC--CCchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccc
Q psy15088 248 AAE--GVMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGD 324 (1291)
Q Consensus 248 ~~~--g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 324 (1291)
+.+ |+.+++++++.+++..++| +++|+||+|+... -..++..+.++++..+..+++...
T Consensus 117 a~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~--------~~~~~~~~~~~i~~~l~~~g~~~~---------- 178 (425)
T PRK12317 117 ADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY--------DEKRYEEVKEEVSKLLKMVGYKPD---------- 178 (425)
T ss_pred cccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc--------cHHHHHHHHHHHHHHHHhhCCCcC----------
Confidence 999 9999999999999999975 7889999998631 012455677788888887776321
Q ss_pred cchhhcccCcccccCcccccCCC
Q psy15088 325 SQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 325 ~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.+|.|.+
T Consensus 179 ~~~i-------i~iSA~~g~gi~ 194 (425)
T PRK12317 179 DIPF-------IPVSAFEGDNVV 194 (425)
T ss_pred cceE-------EEeecccCCCcc
Confidence 1122 678999887664
No 150
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.30 E-value=6.9e-12 Score=145.59 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=93.9
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
..|||+|+||+|||||.|+|+++.-++++..+ |+|+|.......| .++.|.+|||+|.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-----------------GvTRDr~y~~~~~-----~~~~f~lIDTgGl 61 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-----------------GVTRDRIYGDAEW-----LGREFILIDTGGL 61 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-----------------CCccCCccceeEE-----cCceEEEEECCCC
Confidence 37999999999999999999999999998887 9999999999999 7888999999999
Q ss_pred cc-----------ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PV-----------TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~-----------~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. .-++.+++.||++++|+|+..|+++++..++......++|.+. .+|
T Consensus 62 ~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviL--vvN 120 (444)
T COG1160 62 DDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVIL--VVN 120 (444)
T ss_pred CcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEE--EEE
Confidence 52 1277888999999999999999999999999998866677765 555
No 151
>PLN03127 Elongation factor Tu; Provisional
Probab=99.29 E-value=1e-11 Score=150.09 Aligned_cols=113 Identities=20% Similarity=0.291 Sum_probs=92.0
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-+.+|+.||+|+++....++.. ++++++||||||.+|..++..++..+|+++||||+.+|+.
T Consensus 99 ~D~~~~E~~rGiTi~~~~~~~~~~----------------~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~ 162 (447)
T PLN03127 99 IDKAPEEKARGITIATAHVEYETA----------------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM 162 (447)
T ss_pred ccCChhHhhcCceeeeeEEEEcCC----------------CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 455669999999999877766654 5689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcE-EEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMAI-TLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~-ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+||++++.+++..++|. |+++||+|+.. ..+ .++.+.+++...+..+++
T Consensus 163 ~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~---~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 163 PQTKEHILLARQVGVPSLVVFLNKVDVVD------DEE---LLELVEMELRELLSFYKF 212 (447)
T ss_pred hhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHH---HHHHHHHHHHHHHHHhCC
Confidence 99999999999999995 67899999863 112 223334466666665543
No 152
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.29 E-value=1.5e-11 Score=114.02 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=69.4
Q ss_pred EEEEeecc---CCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEE
Q psy15088 795 VHSSKMYP---TEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI 871 (1291)
Q Consensus 795 ~~V~K~~~---~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I 871 (1291)
++|||+.. +++.|+ ++|+|||||+|++||.|++... ...++|++|+.++|.+..+++++.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~~---------~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVRL---------GKEVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcCC---------CCEEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 47899988 888765 8999999999999999997652 2357899999999999999999999999999
Q ss_pred ccCCCcccccceeec
Q psy15088 872 EGIDQPIVKTSTITD 886 (1291)
Q Consensus 872 ~Gl~~~~~k~~Tl~~ 886 (1291)
.|+++..+ ++|+++
T Consensus 71 ~gl~~~~~-Gdtl~~ 84 (85)
T cd03689 71 VNPGNFQI-GDTLTE 84 (85)
T ss_pred ECCCCccc-cCEeeC
Confidence 99987654 667753
No 153
>PRK00049 elongation factor Tu; Reviewed
Probab=99.29 E-value=1.1e-11 Score=148.43 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=94.0
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
..-+.+|..||+|+++....++.. ++.+++||||||.+|..++..++..+|++++|||+.+|+.
T Consensus 50 ~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~ 113 (396)
T PRK00049 50 IDKAPEEKARGITINTAHVEYETE----------------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM 113 (396)
T ss_pred ccCChHHHhcCeEEeeeEEEEcCC----------------CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc
Confidence 344568999999999876655443 5678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEE-EEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMAIT-LCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~i-lvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+||++++.+++..++|++ +++||+|+... .+ .++.+.+++...+..+++
T Consensus 114 ~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~------~~---~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 114 PQTREHILLARQVGVPYIVVFLNKCDMVDD------EE---LLELVEMEVRELLSKYDF 163 (396)
T ss_pred hHHHHHHHHHHHcCCCEEEEEEeecCCcch------HH---HHHHHHHHHHHHHHhcCC
Confidence 999999999999999986 57999998631 12 344566678888887776
No 154
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=1.2e-11 Score=148.35 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=94.5
Q ss_pred ccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC
Q psy15088 173 REGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252 (1291)
Q Consensus 173 ~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~ 252 (1291)
..+-+.+|..||+|+++....+... +++++|||||||.+|..++..++..+|+++||||+.+|+
T Consensus 49 ~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~ 112 (394)
T TIGR00485 49 QIDNAPEEKARGITINTAHVEYETE----------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGP 112 (394)
T ss_pred cccCCHHHHhcCcceeeEEEEEcCC----------------CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 3555679999999999877665443 557999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCcEE-EEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 253 MLNTERLLKHAVQEKMAIT-LCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~i-lvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
.+||++++.+++..++|.+ +|+||+|+.. .++ .++.+.+++...+..+++
T Consensus 113 ~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~------~~~---~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 113 MPQTREHILLARQVGVPYIVVFLNKCDMVD------DEE---LLELVEMEVRELLSEYDF 163 (394)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEEEecccCC------HHH---HHHHHHHHHHHHHHhcCC
Confidence 9999999999999999976 5799999863 112 334456678888887765
No 155
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.28 E-value=2e-11 Score=113.85 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=71.4
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
+.++|||+..+++.|+ ++|+|||||+|++||+|++..++ ......+|++|+.++|++..++++++||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~------~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD------GKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC------CCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 3578999999998765 99999999999999999987653 1234578999999999999999999999999999
Q ss_pred cCCCcccccceee
Q psy15088 873 GIDQPIVKTSTIT 885 (1291)
Q Consensus 873 Gl~~~~~k~~Tl~ 885 (1291)
|+++..+ ++|++
T Consensus 74 gl~~~~~-Gdtl~ 85 (86)
T cd03691 74 GIEDITI-GDTIC 85 (86)
T ss_pred CCCCCcc-cceec
Confidence 9987543 45553
No 156
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.28 E-value=2.1e-11 Score=112.29 Aligned_cols=80 Identities=23% Similarity=0.208 Sum_probs=68.7
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
++++|||+..++. |. ++|+|||||+|++||+|++... ...++|.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~~---------~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVRT---------GKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcCC---------CCEEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 4689999999976 55 9999999999999999998652 34688999999999999999999999999999
Q ss_pred cCCCcccccceee
Q psy15088 873 GIDQPIVKTSTIT 885 (1291)
Q Consensus 873 Gl~~~~~k~~Tl~ 885 (1291)
|++ ..+ ++|++
T Consensus 70 g~~-~~~-Gdtl~ 80 (81)
T cd04091 70 GID-CAS-GDTFT 80 (81)
T ss_pred CCC-ccc-CCEec
Confidence 997 432 56764
No 157
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.3e-12 Score=150.46 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=114.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHH
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYY 293 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~ 293 (1291)
...+++||||||.-|.....++...+|.++||||+.+|++|||.+-++.++..++|+++++||||++. .+|.-.
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~----~np~~v-- 127 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE----ANPDKV-- 127 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC----CCHHHH--
Confidence 35899999999999999999999999999999999999999999999999999999999999999984 222222
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCcccccccccccccccccccccccccc
Q psy15088 294 KIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKF 373 (1291)
Q Consensus 294 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~ 373 (1291)
..-+.++|+..+ +++...++ ++.||..|.|.+ +|++-+
T Consensus 128 ---------~~el~~~gl~~E------~~gg~v~~-------VpvSA~tg~Gi~-----------eLL~~i--------- 165 (509)
T COG0532 128 ---------KQELQEYGLVPE------EWGGDVIF-------VPVSAKTGEGID-----------ELLELI--------- 165 (509)
T ss_pred ---------HHHHHHcCCCHh------hcCCceEE-------EEeeccCCCCHH-----------HHHHHH---------
Confidence 223334566443 34444444 788999999886 332222
Q ss_pred ccccccCCCcccchHHHhhhcCCcccc-ceEEEEcccCCChhHHHHHHHhh
Q psy15088 374 QLKEQDLPDTVYNMEFLADMMDTPHLI-RNVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-rnI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
....++.++..+|+.. +-.+|-.+.+-|.-+++..|++.
T Consensus 166 -----------ll~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~ 205 (509)
T COG0532 166 -----------LLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQD 205 (509)
T ss_pred -----------HHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEec
Confidence 2234445666676654 78888899999988888887755
No 158
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.27 E-value=2.7e-11 Score=151.56 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=102.6
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+.+.+|..||+|+++....+.... ++.+++||||||.+|..++..++..+|+++||||+.+|++
T Consensus 25 ~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~ 89 (614)
T PRK10512 25 ADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM 89 (614)
T ss_pred CccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc
Confidence 4667789999999998766554331 4578999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcE-EEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhccc
Q psy15088 254 LNTERLLKHAVQEKMAI-TLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHE 332 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~-ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 332 (1291)
+||++++..++..++|. |+|+||+|.... ..+..+.+++...+...++.. .++
T Consensus 90 ~qT~ehl~il~~lgi~~iIVVlNKiDlv~~----------~~~~~v~~ei~~~l~~~~~~~------------~~i---- 143 (614)
T PRK10512 90 AQTREHLAILQLTGNPMLTVALTKADRVDE----------ARIAEVRRQVKAVLREYGFAE------------AKL---- 143 (614)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEECCccCCH----------HHHHHHHHHHHHHHHhcCCCC------------CcE----
Confidence 99999999999999985 689999998631 234455666666666555421 112
Q ss_pred CcccccCcccccCCC
Q psy15088 333 DKRYYPTAVEVFGPD 347 (1291)
Q Consensus 333 ~~~~~~sa~~~~g~~ 347 (1291)
++.||.+|.|.+
T Consensus 144 ---i~VSA~tG~gI~ 155 (614)
T PRK10512 144 ---FVTAATEGRGID 155 (614)
T ss_pred ---EEEeCCCCCCCH
Confidence 678999887764
No 159
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.26 E-value=5.4e-12 Score=113.98 Aligned_cols=54 Identities=26% Similarity=0.586 Sum_probs=49.6
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVAD 55 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~ 55 (1291)
|.+||++|.++||++++.. ++|||++|+|+||+|||+|+++|+++| ||++++++
T Consensus 21 l~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~-~v~v~~~~ 75 (75)
T PF14492_consen 21 LSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF-GVEVEFGK 75 (75)
T ss_dssp HHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT-CEBEEEE-
T ss_pred HHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH-CCeeEecC
Confidence 4689999999999999999 789999999999999999999999999 99998864
No 160
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.26 E-value=1.5e-11 Score=140.36 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCcc-ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 223 PGHV-NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 223 pG~~-~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
|||. ....++..+++.||++|+|+||+.+.......+.+.+. ++|+|+|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccC
Confidence 7885 35678999999999999999999988888888877663 78999999999985
No 161
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.25 E-value=4.2e-11 Score=117.87 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=82.1
Q ss_pred EEEEEeeeecccceeeeecCCc--ceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCC
Q psy15088 979 VAFCETVVETSSLKCFAETPNK--RNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGP 1056 (1291)
Q Consensus 979 V~yrEti~~~~~~~~~~~s~nk--~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp 1056 (1291)
|+|||||+++.....+.++..+ +++++++++|++.+.+..+.+.
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g~g~~f~~~---------------------------------- 46 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGSGLQYESE---------------------------------- 46 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCCCCcEEEEE----------------------------------
Confidence 6899999988775555555555 7999999999986532222211
Q ss_pred CCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHH
Q psy15088 1057 EVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAY 1136 (1291)
Q Consensus 1057 ~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~ 1136 (1291)
+..+.+|+ ++..+|.+||+.|+++||| |+||.||+|+|.|+.+|..+ .....+..++++|++
T Consensus 47 -------~~~~~ip~--------~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~--ss~~af~~Aa~~a~~ 108 (115)
T cd01684 47 -------VSLGSLPR--------SFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPV--STAADFRELTPRVLR 108 (115)
T ss_pred -------ecCCcCCH--------HHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCC--CCHHHHHHHHHHHHH
Confidence 01123343 4557889999999999999 99999999999999999653 122344577788888
Q ss_pred HHHHhCC
Q psy15088 1137 SAFLMAT 1143 (1291)
Q Consensus 1137 ~a~l~a~ 1143 (1291)
+|+.+|.
T Consensus 109 ~a~~~a~ 115 (115)
T cd01684 109 QALKKAG 115 (115)
T ss_pred HHHHhcC
Confidence 9988763
No 162
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.25 E-value=1.3e-11 Score=133.19 Aligned_cols=57 Identities=23% Similarity=0.054 Sum_probs=43.1
Q ss_pred CCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 223 pG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
|.+..|...+...++.+|++|+|+|+.+........+. ....++|+++|+||+|...
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCC
Confidence 33444677788889999999999999886555555552 2345789999999999863
No 163
>PRK12735 elongation factor Tu; Reviewed
Probab=99.25 E-value=2.3e-11 Score=145.73 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=93.3
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
..-+.+|..||+|+++....++.. ++.+++||||||.+|..++..++..+|+++||||+.+|+.
T Consensus 50 ~d~~~~E~~rGiT~~~~~~~~~~~----------------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~ 113 (396)
T PRK12735 50 IDNAPEEKARGITINTSHVEYETA----------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM 113 (396)
T ss_pred ccCChhHHhcCceEEEeeeEEcCC----------------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc
Confidence 444568999999999876665443 5578999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEE-EEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMAIT-LCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~i-lvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+|+++++.+++..++|.+ +|+||+|+... ++ .++.+.+++..++..+++
T Consensus 114 ~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~------~~---~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 114 PQTREHILLARQVGVPYIVVFLNKCDMVDD------EE---LLELVEMEVRELLSKYDF 163 (396)
T ss_pred hhHHHHHHHHHHcCCCeEEEEEEecCCcch------HH---HHHHHHHHHHHHHHHcCC
Confidence 999999999999999976 57999998631 12 344455678888887765
No 164
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.24 E-value=6.4e-12 Score=138.58 Aligned_cols=123 Identities=18% Similarity=0.117 Sum_probs=91.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc-----------------
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD----------------- 464 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~----------------- 464 (1291)
+|+++||.++|||||+++|.... . ..........+|.+++|++||+|+..+...+.+.+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~---~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGE---L-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---c-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 47899999999999999998532 1 11112224578999999999999765543332211
Q ss_pred --cCCCCeEEEEEeCCCccccc--ccccc--cccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 465 --VKGKNYLMNIFDTPASPVTL--LLPDV--KGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 465 --~~~~~~~~~liDTpGh~~~~--~l~~~--~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+.+++.++|||||||..+. ++.++ ..+|++++|+|+..|..++++.++..+...++|.++ ++|
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~iv--vvN 146 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFV--VVT 146 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEE--EEE
Confidence 12347899999999997553 34444 367999999999999999999999999999999654 566
No 165
>KOG1145|consensus
Probab=99.24 E-value=9.5e-12 Score=144.33 Aligned_cols=165 Identities=22% Similarity=0.239 Sum_probs=117.3
Q ss_pred ccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHH
Q psy15088 183 RNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKH 262 (1291)
Q Consensus 183 ~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~ 262 (1291)
-|||=.+.-..+.-.+ |++++++|||||.-|.....++...+|.++|||.|.+|++|||.+.++.
T Consensus 184 GGITQhIGAF~V~~p~---------------G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh 248 (683)
T KOG1145|consen 184 GGITQHIGAFTVTLPS---------------GKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH 248 (683)
T ss_pred CCccceeceEEEecCC---------------CCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH
Confidence 3677666655554442 6799999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCccc
Q psy15088 263 AVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVE 342 (1291)
Q Consensus 263 l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~ 342 (1291)
++..++|+|+++||||.+. .+++..++ -+.+.|+.- +..|++.++ +++||..
T Consensus 249 Ak~A~VpiVvAinKiDkp~----a~pekv~~-----------eL~~~gi~~------E~~GGdVQv-------ipiSAl~ 300 (683)
T KOG1145|consen 249 AKSANVPIVVAINKIDKPG----ANPEKVKR-----------ELLSQGIVV------EDLGGDVQV-------IPISALT 300 (683)
T ss_pred HHhcCCCEEEEEeccCCCC----CCHHHHHH-----------HHHHcCccH------HHcCCceeE-------EEeeccc
Confidence 9999999999999999884 44444433 122233311 233455544 7889998
Q ss_pred ccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCcccc-ceEEEEcccCCChhHHHHHHH
Q psy15088 343 VFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLI-RNVALVGHLHHGKTTMIDCLI 421 (1291)
Q Consensus 343 ~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-rnI~iiG~~~~GKsTl~~~ll 421 (1291)
|.|.+ .|.+.+ ....++++|..+|..+ --+.|-+.++.|+-.++-.++
T Consensus 301 g~nl~-----------~L~eai--------------------ll~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iV 349 (683)
T KOG1145|consen 301 GENLD-----------LLEEAI--------------------LLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIV 349 (683)
T ss_pred CCChH-----------HHHHHH--------------------HHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEE
Confidence 77664 222222 1234455555566543 467778888887765555444
No 166
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.24 E-value=4e-11 Score=125.01 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=42.3
Q ss_pred HHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 232 VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 232 ~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
....++.||++|+|+|++++...++..+.+++...++|+++|+||+|..
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 3455667999999999999888888888888877899999999999975
No 167
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.23 E-value=2.9e-11 Score=134.68 Aligned_cols=90 Identities=27% Similarity=0.354 Sum_probs=79.9
Q ss_pred CCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh
Q psy15088 176 PLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN 255 (1291)
Q Consensus 176 pL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~ 255 (1291)
-..+|..||+++....+.+... +++++++|||||.+|..++..+++.+|++++|||+.+|+..+
T Consensus 41 ~~~~e~~rg~ti~~~~~~~~~~----------------~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~ 104 (237)
T cd04168 41 TMELERQRGITIFSAVASFQWE----------------DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQ 104 (237)
T ss_pred CchhHhhCCCceeeeeEEEEEC----------------CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHH
Confidence 3457888999887665555433 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 256 TERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 256 ~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+++++++.++|+++|+||+|+..
T Consensus 105 ~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 105 TRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHHcCCCEEEEEECccccC
Confidence 99999999999999999999999874
No 168
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.22 E-value=3e-11 Score=128.02 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=46.8
Q ss_pred CCcc-ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 223 PGHV-NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 223 pG~~-~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
|||. ....++..+++.||.+|+|+|++++....+..++..+ .++|+++|+||+|..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 6764 4667899999999999999999998887777766654 368999999999985
No 169
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.21 E-value=4.5e-11 Score=144.11 Aligned_cols=104 Identities=23% Similarity=0.265 Sum_probs=80.1
Q ss_pred CCCCcccccceeEEecccccC--------------CCccc-----cccCCCceeeecCceeEEecCCCccccHHHHHHHh
Q psy15088 176 PLCEEPIRNVKFKIREGNLNS--------------SPSIY-----CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAM 236 (1291)
Q Consensus 176 pL~~E~~~Gv~~~l~D~~lht--------------~as~~-----~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~ 236 (1291)
-+.+|..||+|++|..+.+.. .+... +......... .+.+++||||||.+|.++|..++
T Consensus 61 r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~IDtPGH~~fi~~m~~g~ 138 (460)
T PTZ00327 61 RFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTL--KRHVSFVDCPGHDILMATMLNGA 138 (460)
T ss_pred cchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccc--cceEeeeeCCCHHHHHHHHHHHH
Confidence 466999999999998775521 00000 0000000111 35799999999999999999999
Q ss_pred hhcCcEEEEEECCCC-CchhHHHHHHHHHHcCCc-EEEEEEccCccc
Q psy15088 237 RLCDGVVLFVDAAEG-VMLNTERLLKHAVQEKMA-ITLCVNKIDRLM 281 (1291)
Q Consensus 237 ~~~D~~l~vVD~~~g-~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~ 281 (1291)
..+|+++|||||.+| +++||++++..+...+++ +|+|+||||+..
T Consensus 139 ~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 139 AVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred hhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 999999999999997 899999999999999987 678999999863
No 170
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.21 E-value=3.2e-11 Score=138.36 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCCccc-cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 222 PPGHVN-FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 222 tpG~~~-~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
=|||-. -..++..++..||++|+|+|++.+....+..+.+.+. ++|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 378853 4577899999999999999999998888887776654 89999999999975
No 171
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.19 E-value=6.5e-11 Score=125.05 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=37.2
Q ss_pred CcEEEEEECCCCCchhHHHHHHH--HHHcCCcEEEEEEccCccc
Q psy15088 240 DGVVLFVDAAEGVMLNTERLLKH--AVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 240 D~~l~vVD~~~g~~~~~~~~~~~--l~~~~~~~ilvvNKiD~~~ 281 (1291)
|++++|+|++..+...+..+.+. ++..++|+|+|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999999999988888888 5566899999999999863
No 172
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.18 E-value=6.6e-11 Score=143.60 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=110.8
Q ss_pred hhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEE
Q psy15088 166 QGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLF 245 (1291)
Q Consensus 166 ~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~v 245 (1291)
.+|.+|+..+-+.+|+.||+++++....++.. +..++++|||||.+|...+..+++.+|++|||
T Consensus 52 ~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilV 115 (426)
T TIGR00483 52 ASFEFAWVMDRLKEERERGVTIDVAHWKFETD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLV 115 (426)
T ss_pred cccchhhhhccCHHHhhcCceEEEEEEEEccC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEE
Confidence 45777777888889999999999988777654 45899999999999999999999999999999
Q ss_pred EECCCC---CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCcccc
Q psy15088 246 VDAAEG---VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEE 321 (1291)
Q Consensus 246 VD~~~g---~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 321 (1291)
||+.+| ..+++.+++.+++..+++ +|+|+||+|+.. .+ ...++.+.+++...+..+++...
T Consensus 116 vDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~----~~----~~~~~~~~~ei~~~~~~~g~~~~------- 180 (426)
T TIGR00483 116 VAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN----YD----EEEFEAIKKEVSNLIKKVGYNPD------- 180 (426)
T ss_pred EECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC----cc----HHHHHHHHHHHHHHHHHcCCCcc-------
Confidence 999999 899999998888888764 777899999863 11 12455667778888887775321
Q ss_pred ccccchhhcccCcccccCcccccCCC
Q psy15088 322 MGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 322 ~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.++.|..
T Consensus 181 ---~~~~-------i~iSA~~g~ni~ 196 (426)
T TIGR00483 181 ---TVPF-------IPISAWNGDNVI 196 (426)
T ss_pred ---cceE-------EEeecccccccc
Confidence 1112 677888876653
No 173
>COG1159 Era GTPase [General function prediction only]
Probab=99.17 E-value=6.9e-11 Score=130.53 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=83.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.+-|||+|+||+|||||+|+|+++.-+|+++.+ ++|+.....-+.. +++.+.++||||
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~-----------------QTTR~~I~GI~t~-----~~~QiIfvDTPG 63 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKP-----------------QTTRNRIRGIVTT-----DNAQIIFVDTPG 63 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCc-----------------chhhhheeEEEEc-----CCceEEEEeCCC
Confidence 457999999999999999999999999998888 7787766554444 789999999999
Q ss_pred cc----------cccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 480 SP----------VTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 480 h~----------~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
.- ...+..++..+|++++|+|+..++.+.+..+.......+.|.++
T Consensus 64 ih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil 119 (298)
T COG1159 64 IHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVIL 119 (298)
T ss_pred CCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEE
Confidence 72 11244566688999999999999988888887777665556664
No 174
>PLN02674 adenylate kinase
Probab=99.17 E-value=1.2e-11 Score=136.45 Aligned_cols=96 Identities=27% Similarity=0.447 Sum_probs=83.0
Q ss_pred CceeecCCCCccCccchHHHHHHH-HHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGS 668 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e-~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~ 668 (1291)
.+|++|||||+..||+.|.+.+.. ...++.+++|++|++.+++|+.+|.. .+.
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~ 189 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 189 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence 389999999999999998877654 24577899999999999999998742 234
Q ss_pred CCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHH
Q psy15088 669 GRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 669 ~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~L 711 (1291)
+|.||+++.+++||..|..++.||+.+|..++++..++|.+.+
T Consensus 190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~ 232 (244)
T PLN02674 190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPP 232 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCH
Confidence 6999999999999999999999999999999999999887653
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.16 E-value=1.7e-10 Score=144.11 Aligned_cols=130 Identities=22% Similarity=0.182 Sum_probs=101.9
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+.+.+|..+|+|+++....+... ++.++++|||||.+|..++..++..+|++|+|||+.+|++
T Consensus 25 ~d~~~eE~~rGiTid~~~~~~~~~----------------~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~ 88 (581)
T TIGR00475 25 ADRLPEEKKRGMTIDLGFAYFPLP----------------DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM 88 (581)
T ss_pred CcCChhHhcCCceEEeEEEEEEeC----------------CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc
Confidence 456778999999999876655443 4578999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhccc
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHE 332 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 332 (1291)
+||.+++..++..++| +|+|+||+|+... ..+..+.+++..++..+++.. ..++
T Consensus 89 ~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~----------~~~~~~~~ei~~~l~~~~~~~-----------~~~i---- 143 (581)
T TIGR00475 89 TQTGEHLAVLDLLGIPHTIVVITKADRVNE----------EEIKRTEMFMKQILNSYIFLK-----------NAKI---- 143 (581)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHhCCCC-----------CCcE----
Confidence 9999999999999999 9999999998631 123344556666666555421 1122
Q ss_pred CcccccCcccccCCC
Q psy15088 333 DKRYYPTAVEVFGPD 347 (1291)
Q Consensus 333 ~~~~~~sa~~~~g~~ 347 (1291)
++.|+.+|.|.+
T Consensus 144 ---i~vSA~tG~GI~ 155 (581)
T TIGR00475 144 ---FKTSAKTGQGIG 155 (581)
T ss_pred ---EEEeCCCCCCch
Confidence 677888877664
No 176
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.15 E-value=1.4e-10 Score=127.97 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=73.7
Q ss_pred CceeEEecCCCccccHHHHHHHhh--hcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHH
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMR--LCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDA 291 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~--~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~ 291 (1291)
++.+++||||||.+|..++..++. .+|++++|||+..|++++|++++.++...++|+++|+||+|+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~--------- 153 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPA--------- 153 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCH---------
Confidence 678999999999999999999986 799999999999999999999999999999999999999998531
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy15088 292 YYKIKHIIDEINGLLRYLL 310 (1291)
Q Consensus 292 ~~~~~~~~~~v~~~~~~~~ 310 (1291)
..+.+.++++...+...|
T Consensus 154 -~~~~~~~~~l~~~L~~~g 171 (224)
T cd04165 154 -NILQETLKDLKRILKVPG 171 (224)
T ss_pred -HHHHHHHHHHHHHhcCCC
Confidence 234455556666555444
No 177
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.14 E-value=1.3e-10 Score=131.58 Aligned_cols=89 Identities=25% Similarity=0.313 Sum_probs=80.2
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
..+|..||+++......+... +++|+++|||||.+|..++..+++.+|++|+|+|+..|+..++
T Consensus 49 ~~~e~~rg~si~~~~~~~~~~----------------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~ 112 (267)
T cd04169 49 MEIEKQRGISVTSSVMQFEYR----------------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT 112 (267)
T ss_pred cHHHHhCCCCeEEEEEEEeeC----------------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH
Confidence 457889999988777766444 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+.+++++...++|+++|+||+|+..
T Consensus 113 ~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 113 RKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHhcCCCEEEEEECCccCC
Confidence 9999999999999999999999864
No 178
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.14 E-value=2.1e-10 Score=122.74 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=92.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+|+|.+++|||||+++|++.......... ....+++....|+++|+|++.....+.+ .+..++++||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT--VEETFLDVLKEERERGITIKSGVATFEW-----PDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc--eecccccCCHHHHHcCCCeecceEEEee-----CCEEEEEEeCCCcH
Confidence 6899999999999999999988765433222 2235678888899999999887777766 67899999999986
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+. ....+..+|++++|+|+..+...+...++......++|.+| ++|
T Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~i--v~n 122 (189)
T cd00881 74 DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIV--AIN 122 (189)
T ss_pred HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEE--EEE
Confidence 433 23344578999999999988877787777777666667665 555
No 179
>PRK14529 adenylate kinase; Provisional
Probab=99.13 E-value=3.3e-11 Score=131.62 Aligned_cols=96 Identities=31% Similarity=0.485 Sum_probs=78.7
Q ss_pred CceeecCCCCccCccchHHHHHHH-HHHHHHhhhcCCCchHHHHHHhhcccC----------------------------
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRRCLKRGAE---------------------------- 666 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e-~~~l~~v~~ld~~~e~l~~R~l~rg~~---------------------------- 666 (1291)
++|++|||||+..||+.|...+.. ...++.+++|+++++.+++|++.|..+
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~ 157 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE 157 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence 389999999999999998776654 245778999999999999999987421
Q ss_pred CCCCCCCC-HHHHHHHHhhcccc---ccceEEeecc-----hhhhhhhchhHHH
Q psy15088 667 GSGRADDN-EESLKKRISVYNTE---TMPIIKFFEA-----KNLVKRFNAEKSL 711 (1291)
Q Consensus 667 ~~~r~dd~-~e~i~~rl~~~~~~---~~PVl~~sa~-----k~~~~~~~g~~~L 711 (1291)
+.+|.||+ ++.+++||..|+.+ +.|++.||.. ++++..++|.+.+
T Consensus 158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~ 211 (223)
T PRK14529 158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSI 211 (223)
T ss_pred cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCH
Confidence 24699997 78999999999987 4577889985 7888888887653
No 180
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.11 E-value=2.8e-10 Score=112.48 Aligned_cols=112 Identities=19% Similarity=0.273 Sum_probs=82.2
Q ss_pred EEEeeeecccc--eeeeecCC--cceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCC
Q psy15088 981 FCETVVETSSL--KCFAETPN--KRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGP 1056 (1291)
Q Consensus 981 yrEti~~~~~~--~~~~~s~n--k~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp 1056 (1291)
|||||+++++. .+..++++ .++++++.++|++.+.+..+.+
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~----------------------------------- 45 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVN----------------------------------- 45 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEE-----------------------------------
Confidence 89999988553 23333333 4689999999997653222211
Q ss_pred CCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHH
Q psy15088 1057 EVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAY 1136 (1291)
Q Consensus 1057 ~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~ 1136 (1291)
.+. + ..+.+++.++|.+||++|+++|||+|+||+||+|+|.++.+|..+. ...++..++++|++
T Consensus 46 ----------~~~--~--~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s--~~~~~~~aa~~a~~ 109 (116)
T cd01434 46 ----------KIV--G--GAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDS--SEMAFKIAARMAFK 109 (116)
T ss_pred ----------ecc--C--CccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCC--CHHHHHHHHHHHHH
Confidence 110 0 0144567789999999999999999999999999999999986432 35677899999999
Q ss_pred HHHHhCC
Q psy15088 1137 SAFLMAT 1143 (1291)
Q Consensus 1137 ~a~l~a~ 1143 (1291)
+|+.+|+
T Consensus 110 ~al~~a~ 116 (116)
T cd01434 110 EAFKKAK 116 (116)
T ss_pred HHHHhcC
Confidence 9998864
No 181
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.11 E-value=1.8e-10 Score=141.64 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=79.5
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
...|+.||+++......+... +++|+++|||||.+|..++..+++.+|++|+|||+.+|+..++
T Consensus 57 ~~~E~~rgiSi~~~~~~~~~~----------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t 120 (526)
T PRK00741 57 MEMEKQRGISVTSSVMQFPYR----------------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT 120 (526)
T ss_pred cHHHHhhCCceeeeeEEEEEC----------------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH
Confidence 457899999988665554332 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+.++++++..++|+++|+||+|+..
T Consensus 121 ~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 121 RKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred HHHHHHHHhcCCCEEEEEECCcccc
Confidence 9999999999999999999999874
No 182
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.10 E-value=4.5e-10 Score=104.71 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=65.1
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
|.++|||+..+++.|+ ++|+|||||+|++||.|++... ...+++++|+++ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~~---------~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMST---------GKEYEVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEecC---------CCeEEEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 4689999999998765 8999999999999999998652 235789999954 7778999999999999995
Q ss_pred -c---CCCcccccceee
Q psy15088 873 -G---IDQPIVKTSTIT 885 (1291)
Q Consensus 873 -G---l~~~~~k~~Tl~ 885 (1291)
| +++..+ ++|++
T Consensus 70 ~g~~~l~~~~~-Gdtl~ 85 (86)
T cd03699 70 AGIKTVKDARV-GDTIT 85 (86)
T ss_pred ccccccCcccc-ccEee
Confidence 4 444332 55654
No 183
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.09 E-value=3.2e-09 Score=137.58 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=75.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC-------------CC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK-------------GK 468 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~-------------~~ 468 (1291)
|+..-|-+-| ||||+++|-+.+- ..+-.+|||++.....+.++..+ .+
T Consensus 464 ~~~~~~~~~~-KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~ 524 (1049)
T PRK14845 464 NFIANGILVH-NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIK 524 (1049)
T ss_pred cceeeeeecc-cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCC
Confidence 4433333333 9999999865532 12335599999888777664211 11
Q ss_pred CeEEEEEeCCCccccccc--ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 469 NYLMNIFDTPASPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 469 ~~~~~liDTpGh~~~~~l--~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
-..++|+|||||..+..+ .....+|++++|+|+..|+.+|+..++..+...++|.++ ++|
T Consensus 525 ~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIV--ViN 586 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVV--AAN 586 (1049)
T ss_pred cCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEE--EEE
Confidence 123899999999766533 334568999999999999999999999988888887554 666
No 184
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.07 E-value=3.8e-10 Score=138.92 Aligned_cols=92 Identities=23% Similarity=0.289 Sum_probs=81.8
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-...|+.||+++......+... +++|+++|||||.+|..++..+++.+|++|+|||+..|+.
T Consensus 55 ~D~~~~E~~rgisi~~~~~~~~~~----------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~ 118 (527)
T TIGR00503 55 SDWMEMEKQRGISITTSVMQFPYR----------------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE 118 (527)
T ss_pred CCCCHHHHhcCCcEEEEEEEEeeC----------------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC
Confidence 455678999999998766555433 5689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+++.+++.++..++|+++|+||+|+..
T Consensus 119 ~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 119 TRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 9999999999999999999999999863
No 185
>PLN02459 probable adenylate kinase
Probab=99.07 E-value=5.9e-11 Score=131.55 Aligned_cols=92 Identities=29% Similarity=0.537 Sum_probs=79.1
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc------------------------------
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA------------------------------ 665 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~------------------------------ 665 (1291)
.+|++|||||+..|++.|... ..++.+++|+++++.+++|+.+|..
T Consensus 110 ~g~iLDGFPRt~~Qa~~Le~~----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~ 185 (261)
T PLN02459 110 SGFILDGFPRTVRQAEILEGV----TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLL 185 (261)
T ss_pred ceEEEeCCCCCHHHHHHHHhc----CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCC
Confidence 389999999999999988643 2356789999999999999998742
Q ss_pred -------CCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHH
Q psy15088 666 -------EGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 666 -------~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~L 711 (1291)
.+.+|.||+++.+++||..|+.++.||+.+|..++++..++|.+.+
T Consensus 186 ~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~ 238 (261)
T PLN02459 186 PPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGI 238 (261)
T ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCH
Confidence 1237999999999999999999999999999999999888887553
No 186
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.07 E-value=6e-10 Score=110.81 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=80.2
Q ss_pred EEEEEeeeecccc--eeeeecCC--cceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeee
Q psy15088 979 VAFCETVVETSSL--KCFAETPN--KRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAF 1054 (1291)
Q Consensus 979 V~yrEti~~~~~~--~~~~~s~n--k~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~ 1054 (1291)
|+|||||+++++. .+..++.+ .+++++++++|++++.... .+ + .|
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~--~~-i----------------------------~~ 49 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPV--EL-I----------------------------EL 49 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCC--ce-e----------------------------Ee
Confidence 6899999988542 33334332 4589999999997652100 00 0 00
Q ss_pred CCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHH
Q psy15088 1055 GPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRV 1134 (1291)
Q Consensus 1055 gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~ 1134 (1291)
. |. +.+. ..+++.++|.+|++.|++.|||+|+||+||+|+|+++.+|... ++..++.+++.|
T Consensus 50 ~------~~-~~~~--------~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~---s~~~~~~Aa~~a 111 (120)
T cd01693 50 A------NS-AIEV--------LLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGT---SPTMISACASQC 111 (120)
T ss_pred c------Cc-cCCc--------ChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCC---CHHHHHHHHHHH
Confidence 0 00 0122 3346678899999999999999999999999999999998542 234566668999
Q ss_pred HHHHHHhCC
Q psy15088 1135 AYSAFLMAT 1143 (1291)
Q Consensus 1135 ~~~a~l~a~ 1143 (1291)
+++|+.+|+
T Consensus 112 ~~~al~~a~ 120 (120)
T cd01693 112 VQKALKSAG 120 (120)
T ss_pred HHHHHHhcc
Confidence 999998763
No 187
>PRK12289 GTPase RsgA; Reviewed
Probab=99.06 E-value=6.3e-10 Score=129.95 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=87.7
Q ss_pred HhhhcCcEEEEEECCCCC-ch-hHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy15088 235 AMRLCDGVVLFVDAAEGV-ML-NTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLID 312 (1291)
Q Consensus 235 a~~~~D~~l~vVD~~~g~-~~-~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 312 (1291)
+++.+|.+++|+|+.+.- .+ +....+..+...++|+++|+||+|+... .+ .+.+. ..+..+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~~----~~~~~----~~~~~~g~~ 151 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------TE----QQQWQ----DRLQQWGYQ 151 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------HH----HHHHH----HHHHhcCCe
Confidence 588899999999997532 33 2233444555679999999999998531 11 11111 222333431
Q ss_pred CCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhh
Q psy15088 313 DDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLAD 392 (1291)
Q Consensus 313 ~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1291)
+ ++.||.++.|.+ .+.+.+.
T Consensus 152 ---------------v-------~~iSA~tg~GI~-----------eL~~~L~--------------------------- 171 (352)
T PRK12289 152 ---------------P-------LFISVETGIGLE-----------ALLEQLR--------------------------- 171 (352)
T ss_pred ---------------E-------EEEEcCCCCCHH-----------HHhhhhc---------------------------
Confidence 1 567888766543 1111000
Q ss_pred hcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEE
Q psy15088 393 MMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLM 472 (1291)
Q Consensus 393 ~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~ 472 (1291)
. ..++|+|.+|+|||||+|+|+......+...+. ...+-|.+|+.+....+ + ++ .
T Consensus 172 -----~--ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~----------~~~rGrHTT~~~~l~~l--~----~g--~ 226 (352)
T PRK12289 172 -----N--KITVVAGPSGVGKSSLINRLIPDVELRVGKVSG----------KLGRGRHTTRHVELFEL--P----NG--G 226 (352)
T ss_pred -----c--ceEEEEeCCCCCHHHHHHHHcCccccccccccC----------CCCCCCCcCceeEEEEC--C----CC--c
Confidence 0 147999999999999999999876554433321 11233446766543322 1 12 2
Q ss_pred EEEeCCCcc
Q psy15088 473 NIFDTPASP 481 (1291)
Q Consensus 473 ~liDTpGh~ 481 (1291)
.||||||..
T Consensus 227 ~liDTPG~~ 235 (352)
T PRK12289 227 LLADTPGFN 235 (352)
T ss_pred EEEeCCCcc
Confidence 699999985
No 188
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.06 E-value=3.5e-10 Score=141.46 Aligned_cols=97 Identities=32% Similarity=0.386 Sum_probs=80.1
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-+..|+.||+++....+.+ .|.....+ ++.|+|+|||||.+|..++..+++.||++|+|||+.+|+.
T Consensus 44 lD~~~~ErerGiTi~~~~v~~--------~~~~~dg~---~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~ 112 (600)
T PRK05433 44 LDSMDLERERGITIKAQAVRL--------NYKAKDGE---TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE 112 (600)
T ss_pred ccCchHHhhcCCcccccEEEE--------EEEccCCC---cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC
Confidence 444668999999998544333 22211111 4589999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.||...+.++...++|+|+|+||+|+..
T Consensus 113 ~qt~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 113 AQTLANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence 9999999999889999999999999863
No 189
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.04 E-value=1.8e-10 Score=134.26 Aligned_cols=104 Identities=12% Similarity=0.169 Sum_probs=90.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+++|+|+||+|||||.|+|+++.++|+++.+ |+|+|.....+.. +++.+.|+||+|..
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-----------------GTTRDviee~i~i-----~G~pv~l~DTAGiR 276 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-----------------GTTRDVIEEDINL-----NGIPVRLVDTAGIR 276 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCceEecCCC-----------------CCccceEEEEEEE-----CCEEEEEEecCCcc
Confidence 8999999999999999999999999999999 9999999999999 89999999999994
Q ss_pred ----------cccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 ----------VTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ----------~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
..++...+.+||.+++|+|+....+.++..+.. ....++|.++ ++|
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~--v~N 332 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIV--VLN 332 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEE--EEe
Confidence 346788889999999999999988778877766 3445566665 445
No 190
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9e-10 Score=126.91 Aligned_cols=102 Identities=22% Similarity=0.202 Sum_probs=90.1
Q ss_pred HHHhhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcE
Q psy15088 163 SIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGV 242 (1291)
Q Consensus 163 si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~ 242 (1291)
+++.++. -...+-+.+|..||+|+++.-..+.-. ++...+||+|||.+|...+..++...|.+
T Consensus 15 ~L~~alt-g~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~~fIDvpgh~~~i~~miag~~~~d~a 77 (447)
T COG3276 15 TLLKALT-GGVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVMGFIDVPGHPDFISNLLAGLGGIDYA 77 (447)
T ss_pred hhhhhhc-ccccccchhhhhcCceEeeeeEeccCC----------------CCceEEeeCCCcHHHHHHHHhhhcCCceE
Confidence 4444444 245777889999999999988877666 55788999999999999999999999999
Q ss_pred EEEEECCCCCchhHHHHHHHHHHcCCcE-EEEEEccCccc
Q psy15088 243 VLFVDAAEGVMLNTERLLKHAVQEKMAI-TLCVNKIDRLM 281 (1291)
Q Consensus 243 l~vVD~~~g~~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~ 281 (1291)
+||||+.+|+++||.+++..+.-.|++. ++|++|+|+..
T Consensus 78 lLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d 117 (447)
T COG3276 78 LLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD 117 (447)
T ss_pred EEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc
Confidence 9999999999999999999999999996 88899999974
No 191
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.02 E-value=9.4e-10 Score=119.04 Aligned_cols=87 Identities=32% Similarity=0.458 Sum_probs=73.1
Q ss_pred CcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH
Q psy15088 179 EEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER 258 (1291)
Q Consensus 179 ~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~ 258 (1291)
.|+.+|+++......+... +.+++++||||+.+|...+...++.+|++++|+|+.+|..++++.
T Consensus 45 ~e~~~g~t~~~~~~~~~~~----------------~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~ 108 (194)
T cd01891 45 LERERGITILAKNTAVTYK----------------DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRF 108 (194)
T ss_pred hHHhcccccccceeEEEEC----------------CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHH
Confidence 4667777776544333222 458899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEEccCccc
Q psy15088 259 LLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 259 ~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++.+...++|+++|+||+|+..
T Consensus 109 ~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 109 VLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred HHHHHHHcCCCEEEEEECCCCCC
Confidence 88888888999999999999863
No 192
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.02 E-value=1e-09 Score=129.69 Aligned_cols=164 Identities=18% Similarity=0.142 Sum_probs=96.4
Q ss_pred ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHH
Q psy15088 227 NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLL 306 (1291)
Q Consensus 227 ~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (1291)
+|...+..-...+|++++|||+.+-......++.+.+. ++|+++|+||+|....+. .. +++.+.+...+
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~--~~-------~~~~~~l~~~~ 120 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSV--NL-------SKIKEWMKKRA 120 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCC--CH-------HHHHHHHHHHH
Confidence 56554444557889999999998766666666655542 789999999999853211 11 12222233334
Q ss_pred HHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccc
Q psy15088 307 RYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYN 386 (1291)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (1291)
..+|+... +.+..||..++|.+ ++.
T Consensus 121 k~~g~~~~-------------------~i~~vSAk~g~gv~-----------eL~------------------------- 145 (360)
T TIGR03597 121 KELGLKPV-------------------DIILVSAKKGNGID-----------ELL------------------------- 145 (360)
T ss_pred HHcCCCcC-------------------cEEEecCCCCCCHH-----------HHH-------------------------
Confidence 44443210 11567888777653 110
Q ss_pred hHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC
Q psy15088 387 MEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 387 ~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
+.+.++. .-+++.++|.+|+|||||+|+|+........ ..+. -...|+|++...+.+
T Consensus 146 -~~l~~~~----~~~~v~~vG~~nvGKStliN~l~~~~~~~~~------~~~~------s~~pgtT~~~~~~~~------ 202 (360)
T TIGR03597 146 -DKIKKAR----NKKDVYVVGVTNVGKSSLINKLLKQNNGDKD------VITT------SPFPGTTLDLIEIPL------ 202 (360)
T ss_pred -HHHHHHh----CCCeEEEECCCCCCHHHHHHHHHhhccCCcc------eeee------cCCCCeEeeEEEEEe------
Confidence 0111110 0158999999999999999999986431100 0001 112388877654332
Q ss_pred CCCeEEEEEeCCCcc
Q psy15088 467 GKNYLMNIFDTPASP 481 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~ 481 (1291)
+..+.++||||..
T Consensus 203 --~~~~~l~DtPG~~ 215 (360)
T TIGR03597 203 --DDGHSLYDTPGII 215 (360)
T ss_pred --CCCCEEEECCCCC
Confidence 1235799999975
No 193
>KOG1191|consensus
Probab=99.01 E-value=2.7e-10 Score=131.95 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=93.2
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
.-.+|||+|+||+|||||+|+|..+.+.|+++.+ |+|+|+..+.|.. +++.+.|+||+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-----------------GTTRDaiea~v~~-----~G~~v~L~DTA 324 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-----------------GTTRDAIEAQVTV-----NGVPVRLSDTA 324 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-----------------CcchhhheeEeec-----CCeEEEEEecc
Confidence 3469999999999999999999999999999999 9999999999998 89999999999
Q ss_pred Ccc-----------cccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 479 ASP-----------VTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 479 Gh~-----------~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
|.. ..++-+.+.+||++++|+|+..+...++.++.+.+...+..+.+
T Consensus 325 GiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~ 382 (531)
T KOG1191|consen 325 GIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVV 382 (531)
T ss_pred ccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEE
Confidence 993 34566777899999999999998888888888888777766654
No 194
>PRK13796 GTPase YqeH; Provisional
Probab=99.01 E-value=1.8e-09 Score=127.86 Aligned_cols=163 Identities=20% Similarity=0.172 Sum_probs=93.4
Q ss_pred ccHHHHHHHhhhcC-cEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHH
Q psy15088 227 NFSDEVTAAMRLCD-GVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGL 305 (1291)
Q Consensus 227 ~~~~~~~~a~~~~D-~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (1291)
+|. ++...+..+| .+++|||+.+-.......+.++. .++|+++|+||+|+...+ ... +++.+.+...
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~--~~~-------~~i~~~l~~~ 125 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKS--VKK-------NKVKNWLRQE 125 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCc--cCH-------HHHHHHHHHH
Confidence 444 4777888777 89999999886555444444433 278999999999985311 111 1112222333
Q ss_pred HHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCccc
Q psy15088 306 LRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVY 385 (1291)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 385 (1291)
...+|+... +.+..||.+++|.. .+.+
T Consensus 126 ~k~~g~~~~-------------------~v~~vSAk~g~gI~-----------eL~~----------------------- 152 (365)
T PRK13796 126 AKELGLRPV-------------------DVVLISAQKGHGID-----------ELLE----------------------- 152 (365)
T ss_pred HHhcCCCcC-------------------cEEEEECCCCCCHH-----------HHHH-----------------------
Confidence 334443110 11556777766543 1111
Q ss_pred chHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc
Q psy15088 386 NMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV 465 (1291)
Q Consensus 386 ~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 465 (1291)
.+.+. ..-+++.++|.+|+|||||+|+|+....... +....-.-.|+|++...+.+.
T Consensus 153 ---~I~~~----~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~------------~~~~~s~~pGTT~~~~~~~l~---- 209 (365)
T PRK13796 153 ---AIEKY----REGRDVYVVGVTNVGKSTLINRIIKEITGEK------------DVITTSRFPGTTLDKIEIPLD---- 209 (365)
T ss_pred ---HHHHh----cCCCeEEEEcCCCCcHHHHHHHHHhhccCcc------------ceEEecCCCCccceeEEEEcC----
Confidence 11111 0125899999999999999999996531000 000011223999887655432
Q ss_pred CCCCeEEEEEeCCCcc
Q psy15088 466 KGKNYLMNIFDTPASP 481 (1291)
Q Consensus 466 ~~~~~~~~liDTpGh~ 481 (1291)
++ ..++||||..
T Consensus 210 --~~--~~l~DTPGi~ 221 (365)
T PRK13796 210 --DG--SFLYDTPGII 221 (365)
T ss_pred --CC--cEEEECCCcc
Confidence 12 4799999964
No 195
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.01 E-value=1e-09 Score=139.35 Aligned_cols=68 Identities=31% Similarity=0.371 Sum_probs=64.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++|+|||||.+|...+..+++.+|++|||||+.+|+.+||.+++++++..++|+|+|+||||+..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999863
No 196
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.00 E-value=8.3e-10 Score=137.98 Aligned_cols=96 Identities=33% Similarity=0.419 Sum_probs=79.6
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
..-+..|+.||+++....+.+. |.....+ .+.++|+|||||.+|..++..+++.||++|||||+.+|++
T Consensus 40 ~D~~~~ErerGiTi~~~~v~~~--------~~~~~g~---~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~ 108 (595)
T TIGR01393 40 LDSMDLERERGITIKAQAVRLN--------YKAKDGE---TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE 108 (595)
T ss_pred cCCChHHHhcCCCeeeeEEEEE--------EEcCCCC---EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC
Confidence 4456689999999986544432 2100011 3479999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
.|+...+..+.+.++|+|+|+||+|+.
T Consensus 109 ~qt~~~~~~~~~~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 109 AQTLANVYLALENDLEIIPVINKIDLP 135 (595)
T ss_pred HhHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 999999988888899999999999985
No 197
>PRK14526 adenylate kinase; Provisional
Probab=98.98 E-value=2.8e-10 Score=124.16 Aligned_cols=91 Identities=33% Similarity=0.586 Sum_probs=76.7
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
.+|++|||||+..|++.|...+.. ..+++++++++++++|+.+|.. .+.+
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 154 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQ 154 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeec
Confidence 389999999999999887653322 2466789999999999998752 2347
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
|.||+++.+++||..|..++.||+.+|..++++..++|.++
T Consensus 155 R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~ 195 (211)
T PRK14526 155 RKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKD 195 (211)
T ss_pred cCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCC
Confidence 99999999999999999999999999999998888888765
No 198
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.98 E-value=4.6e-09 Score=113.50 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=75.3
Q ss_pred CcccccceeEEecccccCCCccc-cccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH
Q psy15088 179 EEPIRNVKFKIREGNLNSSPSIY-CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE 257 (1291)
Q Consensus 179 ~E~~~Gv~~~l~D~~lht~as~~-~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~ 257 (1291)
.|..+|.++......+....... ..-...... ++.++++|||||.+|..++..++..+|++++|+|+.+|.+.++.
T Consensus 34 ~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~ 110 (192)
T cd01889 34 QSQERGITLDLGFSSFYVDKPKHLRELINPGEE---NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTA 110 (192)
T ss_pred HHHHcCCeeeecceEEEeccccccccccccccc---CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHH
Confidence 57778888877655443221100 000000111 45899999999999999999999999999999999999999998
Q ss_pred HHHHHHHHcCCcEEEEEEccCccc
Q psy15088 258 RLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 258 ~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+.+.++...++|+++|+||+|+..
T Consensus 111 ~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 111 ECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHcCCCEEEEEECcccCC
Confidence 888888778999999999999863
No 199
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.97 E-value=3.9e-09 Score=115.15 Aligned_cols=108 Identities=23% Similarity=0.188 Sum_probs=78.0
Q ss_pred cCCCCCcccccceeEEecccccCC--------CccccccCCCceee---------ecCceeEEecCCCccccHHHHHHHh
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSS--------PSIYCSNKSHSWEI---------VCTRNNNKCLPPGHVNFSDEVTAAM 236 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~--------as~~~~~~~~~~~i---------i~~~~~~liDtpG~~~~~~~~~~a~ 236 (1291)
.....+|..||+++.+.-+.+.-. ......+....+.. -.+++++++|||||.+|..++..++
T Consensus 25 ~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 104 (203)
T cd01888 25 TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGA 104 (203)
T ss_pred CCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhh
Confidence 345678999999998765544321 00000000000000 0036899999999999999999999
Q ss_pred hhcCcEEEEEECCC-CCchhHHHHHHHHHHcCC-cEEEEEEccCccc
Q psy15088 237 RLCDGVVLFVDAAE-GVMLNTERLLKHAVQEKM-AITLCVNKIDRLM 281 (1291)
Q Consensus 237 ~~~D~~l~vVD~~~-g~~~~~~~~~~~l~~~~~-~~ilvvNKiD~~~ 281 (1291)
..+|++++|||+.+ +..+++.+++..+...++ |+++|+||+|+..
T Consensus 105 ~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 105 AVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred hcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 99999999999998 478899999988887776 5788999999863
No 200
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.93 E-value=2.2e-09 Score=110.65 Aligned_cols=125 Identities=13% Similarity=0.195 Sum_probs=83.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc-
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS- 480 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh- 480 (1291)
+||++|.||+|||||.|+|.+.. ..+..-+ |+|++.....+.+ .+..+.|+||||.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~p-----------------G~Tv~~~~g~~~~-----~~~~~~lvDlPG~y 58 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWP-----------------GTTVEKKEGIFKL-----GDQQVELVDLPGIY 58 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEEST-----------------TSSSEEEEEEEEE-----TTEEEEEEE----S
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCC-----------------CCCeeeeeEEEEe-----cCceEEEEECCCcc
Confidence 79999999999999999999886 3333334 9999988777877 7899999999995
Q ss_pred cc------c-ccccc--ccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhC-CccCcHHH
Q psy15088 481 PV------T-LLLPD--VKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVG-DVDSSLPA 550 (1291)
Q Consensus 481 ~~------~-~~l~~--~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~-~~~~~l~~ 550 (1291)
+. . .+... ....|+++.|+|+.. -.++..+..+..+.|+|.++ .+| + +|.... ...-....
T Consensus 59 sl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vv--vlN----~-~D~a~~~g~~id~~~ 129 (156)
T PF02421_consen 59 SLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVV--VLN----K-MDEAERKGIEIDAEK 129 (156)
T ss_dssp SSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEE--EEE----T-HHHHHHTTEEE-HHH
T ss_pred cCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEE--EEe----C-HHHHHHcCCEECHHH
Confidence 21 0 01111 246799999999976 35566777888889999875 444 3 454322 11112455
Q ss_pred HHHHhCCC
Q psy15088 551 VLDQLGIH 558 (1291)
Q Consensus 551 i~~~lg~~ 558 (1291)
+.+.||+.
T Consensus 130 Ls~~Lg~p 137 (156)
T PF02421_consen 130 LSERLGVP 137 (156)
T ss_dssp HHHHHTS-
T ss_pred HHHHhCCC
Confidence 66666654
No 201
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.93 E-value=1.9e-09 Score=112.51 Aligned_cols=108 Identities=22% Similarity=0.310 Sum_probs=79.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++|+|||||+++|.+.. .+....|..+|+|++.....+.+. .++.++++||||+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------------~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------------TDRLPEEKKRGITIDLGFAYLDLP----SGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------------cccchhhhccCceEEeeeEEEEec----CCcEEEEEECCChH
Confidence 89999999999999999997542 122344666788988776666662 26789999999997
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcC-ccchhhhhh
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASA-QRSFVEFVL 530 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~-~~~fv~fil 530 (1291)
.+. ....+..+|++++|+|+..++..++...+......+. |.++ ++|
T Consensus 63 ~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~il--v~N 112 (164)
T cd04171 63 KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLV--VLT 112 (164)
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEE--EEE
Confidence 543 3445667899999999998887888776665555565 4333 555
No 202
>KOG1144|consensus
Probab=98.90 E-value=2.8e-09 Score=127.01 Aligned_cols=125 Identities=22% Similarity=0.221 Sum_probs=91.3
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHH-
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYK- 294 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~- 294 (1291)
-+.+||||||..|..-..++...||.||+|||...|+.|||.+-+++||..+.|+|+++||+||+-..-...-..++..
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999999743211111223322
Q ss_pred ----------HHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 295 ----------IKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 295 ----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
|+.-+.++-.-+..-|+.........++++...+ ++.||..|-|..
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsi-------VPTSA~sGeGip 676 (1064)
T KOG1144|consen 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSI-------VPTSAISGEGIP 676 (1064)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEe-------eecccccCCCcH
Confidence 2222233333344445555555555566666555 677888777664
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.90 E-value=5.7e-09 Score=125.65 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=79.4
Q ss_pred CCCCCcccccceeEEecccccCCC--------ccccccC-CCce-eeecCceeEEecCCCccccHHHHHHHhhhcCcEEE
Q psy15088 175 GPLCEEPIRNVKFKIREGNLNSSP--------SIYCSNK-SHSW-EIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVL 244 (1291)
Q Consensus 175 GpL~~E~~~Gv~~~l~D~~lht~a--------s~~~~~~-~~~~-~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~ 244 (1291)
.-..+|..||+++.+.-+.++... ..+.... .... ..-.++.++++|||||.+|..++..++..+|++||
T Consensus 30 d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIl 109 (406)
T TIGR03680 30 DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALL 109 (406)
T ss_pred ccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEE
Confidence 445678899999998765543110 0001000 0000 00003579999999999999999999999999999
Q ss_pred EEECCCCC-chhHHHHHHHHHHcCCc-EEEEEEccCccc
Q psy15088 245 FVDAAEGV-MLNTERLLKHAVQEKMA-ITLCVNKIDRLM 281 (1291)
Q Consensus 245 vVD~~~g~-~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~ 281 (1291)
|||+.+|+ .+|+++++..+...+++ +++|+||+|...
T Consensus 110 VVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 110 VIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 99999998 99999999999888865 788899999863
No 204
>KOG0459|consensus
Probab=98.90 E-value=1.9e-09 Score=121.46 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=119.3
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHH
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAA 235 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a 235 (1291)
|.++.++.-..+|.++|..+.-.+|+.+|-++.+..+.|.+. .++|+++|+|||..|..+|+.+
T Consensus 114 yereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte----------------~~~ftiLDApGHk~fv~nmI~G 177 (501)
T KOG0459|consen 114 YEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE----------------NKRFTILDAPGHKSFVPNMIGG 177 (501)
T ss_pred HHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec----------------ceeEEeeccCcccccchhhccc
Confidence 678899999999999999999999999999999999999988 6799999999999999999999
Q ss_pred hhhcCcEEEEEECCCCC-------chhHHHHHHHHHHcCCcE-EEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHH
Q psy15088 236 MRLCDGVVLFVDAAEGV-------MLNTERLLKHAVQEKMAI-TLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLR 307 (1291)
Q Consensus 236 ~~~~D~~l~vVD~~~g~-------~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (1291)
+..||.+++|+.|+.|- ..||++++.+++..++.. |++|||||.+..++. ..+++++.+.+...+.
T Consensus 178 asqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs------~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 178 ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS------NERYEECKEKLQPFLR 251 (501)
T ss_pred cchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc------hhhHHHHHHHHHHHHH
Confidence 99999999999998764 459999999999999875 556999999864432 3577788889999998
Q ss_pred HhcC
Q psy15088 308 YLLI 311 (1291)
Q Consensus 308 ~~~~ 311 (1291)
.+|+
T Consensus 252 ~~g~ 255 (501)
T KOG0459|consen 252 KLGF 255 (501)
T ss_pred Hhcc
Confidence 8876
No 205
>PRK14528 adenylate kinase; Provisional
Probab=98.89 E-value=1e-09 Score=117.79 Aligned_cols=94 Identities=32% Similarity=0.612 Sum_probs=82.3
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
+|++|||||+..|++.+...+... ...+.+++|++|++++++|+.+|.. ..+|.||+++.+++|+..|...+.||+.+
T Consensus 81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~-~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~ 159 (186)
T PRK14528 81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE-IEGRADDNEATIKNRLDNYNKKTLPLLDF 159 (186)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc-ccCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 799999999999998887766432 3467789999999999999999864 35799999999999999999999999999
Q ss_pred ecchhhhhhhchhHHH
Q psy15088 696 FEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 696 sa~k~~~~~~~g~~~L 711 (1291)
|..++++..++|.++.
T Consensus 160 y~~~~~~~~i~~~~~~ 175 (186)
T PRK14528 160 YAAQKKLSQVNGVGSL 175 (186)
T ss_pred HHhCCCEEEEECCCCH
Confidence 9999999999987664
No 206
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.89 E-value=4e-09 Score=131.24 Aligned_cols=66 Identities=32% Similarity=0.402 Sum_probs=63.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++|||||.+|...+.++++.+|++|||||+.+|+.+||.+++++++..++|+|+++||+|+..
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999863
No 207
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.88 E-value=6.4e-09 Score=116.46 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=34.1
Q ss_pred HHhhhcCcEEEEEECCCCC-ch-hHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 234 AAMRLCDGVVLFVDAAEGV-ML-NTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 234 ~a~~~~D~~l~vVD~~~g~-~~-~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
..++.+|.+++|.|+.+.- .. .-...+..+...++|+++|+||+|+.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 3588899999999998633 22 12223345556799999999999985
No 208
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.88 E-value=3.9e-09 Score=120.29 Aligned_cols=68 Identities=31% Similarity=0.431 Sum_probs=64.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++++++|||||+.+|..++..+++.+|++++|+|+..|...++..++++++..++|+++|+||+|+..
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999874
No 209
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.88 E-value=1.6e-08 Score=129.44 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=86.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||.|+|.+... .+.+- .|+|++.....+.+ +++.++++||||+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~-----------------pGvTve~k~g~~~~-----~~~~i~lvDtPG~ 60 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNW-----------------AGVTVERKEGQFST-----TDHQVTLVDLPGT 60 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-----------------CCceEeeEEEEEEc-----CceEEEEEECCCc
Confidence 4899999999999999999976532 22222 28888777666776 7899999999998
Q ss_pred cccccc--------------ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhh-CCcc
Q psy15088 481 PVTLLL--------------PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVV-GDVD 545 (1291)
Q Consensus 481 ~~~~~l--------------~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~-~~~~ 545 (1291)
..+... -....+|+++.|+|+... .+...++.+..+.|+|.++ ++| | +|... ....
T Consensus 61 ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIv--VlN----K-~Dl~~~~~i~ 131 (772)
T PRK09554 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIV--ALN----M-LDIAEKQNIR 131 (772)
T ss_pred cccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEE--EEE----c-hhhhhccCcH
Confidence 543211 012367999999999764 2334566677788999876 666 4 56532 2223
Q ss_pred CcHHHHHHHhCCC
Q psy15088 546 SSLPAVLDQLGIH 558 (1291)
Q Consensus 546 ~~l~~i~~~lg~~ 558 (1291)
..+.++.+++|+.
T Consensus 132 id~~~L~~~LG~p 144 (772)
T PRK09554 132 IDIDALSARLGCP 144 (772)
T ss_pred HHHHHHHHHhCCC
Confidence 3455666667764
No 210
>PRK13808 adenylate kinase; Provisional
Probab=98.87 E-value=1.3e-09 Score=125.22 Aligned_cols=95 Identities=28% Similarity=0.479 Sum_probs=80.1
Q ss_pred CceeecCCCCccCccchHHHHHHH-HHHHHHhhhcCCCchHHHHHHhhcccC-----CCCCCCCCHHHHHHHHhhccccc
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRRCLKRGAE-----GSGRADDNEESLKKRISVYNTET 689 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e-~~~l~~v~~ld~~~e~l~~R~l~rg~~-----~~~r~dd~~e~i~~rl~~~~~~~ 689 (1291)
++|+||||||+..|++.|...+.. .+.++++++|++|++++++|+..|... ...|.||+++.|++|+..|...+
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t 158 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQT 158 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHh
Confidence 389999999999999988766643 246788999999999999999987421 23689999999999999999999
Q ss_pred cceEEeecchhhhhhhchhHH
Q psy15088 690 MPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 690 ~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
.||+.+|..++.+..++|.+.
T Consensus 159 ~PLl~~Y~e~~~lv~IDa~~s 179 (333)
T PRK13808 159 EPLVHYYSEKRKLLTVDGMMT 179 (333)
T ss_pred HHHHHHhhccCcEEEEECCCC
Confidence 999999998887888887643
No 211
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.87 E-value=2.2e-08 Score=104.45 Aligned_cols=67 Identities=25% Similarity=0.213 Sum_probs=60.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC-cEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM-AITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~-~~ilvvNKiD~~~ 281 (1291)
..++++||||+.+|...+..+++.||++++|+|+.+|..+++.+.+..++..++ |+++|+||+|...
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 478899999999999888899999999999999999998999988887777776 8999999999863
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.86 E-value=7.8e-09 Score=128.99 Aligned_cols=125 Identities=23% Similarity=0.184 Sum_probs=92.3
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccc---cC-------
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLE---LK------- 285 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~---~~------- 285 (1291)
.++++|||||.+|...+..+++.+|+++||||+.+|+.+|+.++++.++..++|+++++||+|+.... .+
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999985210 00
Q ss_pred -CChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 286 -LPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 286 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
.........|.+.+.++...+...|+.........+++...++ ++.||.+|.|.+
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~i-------vpiSA~tGeGi~ 207 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAI-------VPVSAKTGEGIP 207 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceE-------eeccCCCCCChH
Confidence 1112334455666666666777777654322212233344444 688999887774
No 213
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=8.2e-09 Score=113.42 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=99.2
Q ss_pred CCCcccccceeEEeccccc--C----------CCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEE
Q psy15088 177 LCEEPIRNVKFKIREGNLN--S----------SPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVL 244 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lh--t----------~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~ 244 (1291)
-.+|-.||++++|.-+... . .....|..-+..-++ -+++.++|+|||.-....|.++....|+|||
T Consensus 38 hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l--~R~VSfVDaPGHe~LMATMLsGAAlMDgAlL 115 (415)
T COG5257 38 HSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETEL--VRRVSFVDAPGHETLMATMLSGAALMDGALL 115 (415)
T ss_pred hhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccE--EEEEEEeeCCchHHHHHHHhcchhhhcceEE
Confidence 3478899999998655322 1 011122223333344 3789999999999999999999999999999
Q ss_pred EEECCCC-CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccc
Q psy15088 245 FVDAAEG-VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEM 322 (1291)
Q Consensus 245 vVD~~~g-~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 322 (1291)
||+|.+. .+|||++|+-.+.-.|++ +|++-||+|.... +.+..+.++|.+-+....
T Consensus 116 vIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~------E~AlE~y~qIk~FvkGt~---------------- 173 (415)
T COG5257 116 VIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR------ERALENYEQIKEFVKGTV---------------- 173 (415)
T ss_pred EEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH------HHHHHHHHHHHHHhcccc----------------
Confidence 9999984 699999999999999987 6777999999853 334444444443322111
Q ss_pred cccchhhcccCcccccCcccccCCC
Q psy15088 323 GDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 323 ~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
.+..|+ +++||.|.++.|
T Consensus 174 Ae~aPI-------IPiSA~~~~NID 191 (415)
T COG5257 174 AENAPI-------IPISAQHKANID 191 (415)
T ss_pred cCCCce-------eeehhhhccCHH
Confidence 122344 789999988876
No 214
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.83 E-value=9.4e-09 Score=117.95 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=35.9
Q ss_pred HhhhcCcEEEEEECCCCC-chhH-HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 235 AMRLCDGVVLFVDAAEGV-MLNT-ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 235 a~~~~D~~l~vVD~~~g~-~~~~-~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
-++.+|.+++|+|+.+.. .... ...+..++..++|+++|+||+|+..
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 477899999999998876 3322 2344556778999999999999853
No 215
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.82 E-value=2e-09 Score=118.03 Aligned_cols=93 Identities=28% Similarity=0.549 Sum_probs=78.1
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
.+|++|||||+..|++.|...+.. ..+.++++++|++.+++|+.+|.. .+.+
T Consensus 79 ~~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~ 156 (210)
T TIGR01351 79 NGFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQ 156 (210)
T ss_pred CcEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcccc
Confidence 389999999999998877655432 245688999999999999998852 1236
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
|.||+++.+++|+..|...+.||+.+|..++++..++|.+.
T Consensus 157 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~ 197 (210)
T TIGR01351 157 REDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGP 197 (210)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCC
Confidence 99999999999999999999999999999888888888654
No 216
>PRK12288 GTPase RsgA; Reviewed
Probab=98.81 E-value=1.8e-08 Score=117.93 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=32.2
Q ss_pred hhhcCcEEEEEECCCCCchhH-HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 236 MRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 236 ~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+|.+++|.+........- ...+..+...++|+++|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 566899888888665444322 2223356677899999999999863
No 217
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=98.80 E-value=7.4e-09 Score=102.38 Aligned_cols=89 Identities=20% Similarity=0.321 Sum_probs=68.5
Q ss_pred eeeeeeccCCccee-eee---CCCCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEecc
Q psy15088 60 FCETVVETSSLKCF-AET---PNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGP 135 (1291)
Q Consensus 60 frETi~~~~~~~~~-~~s---~n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp 135 (1291)
|||||++.+..... .+. ...+++++++++|++++
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~------------------------------------------ 38 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERG------------------------------------------ 38 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCC------------------------------------------
Confidence 89999987642211 111 12348999999998643
Q ss_pred CCCCCeEEEcCCCCCcccccchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 136 EVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 136 ~~~g~Nil~~~t~~~~~~~~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
.+|.|++.+.+ ...+++++++|..||++|+..||||++|++|++|.|.++.+|..
T Consensus 39 ---~~~~~~~~~~~----~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~ 93 (116)
T cd01680 39 ---SGVRVVDPVDE----ELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG 93 (116)
T ss_pred ---CCcEEEEecCC----CcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC
Confidence 13677776543 23568999999999999999999999999999999999999876
No 218
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=1.7e-08 Score=116.51 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHhhhcCcEEEEEECCCCCch--hHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 233 TAAMRLCDGVVLFVDAAEGVML--NTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 233 ~~a~~~~D~~l~vVD~~~g~~~--~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
...++.+|.+++|+|+.+.... .....+..++..++|+++|+||+|+.
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 3458899999999999753221 11334445677899999999999985
No 219
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.78 E-value=1.8e-08 Score=125.25 Aligned_cols=125 Identities=21% Similarity=0.161 Sum_probs=86.5
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccc---cCCChhHHH
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLE---LKLPPQDAY 292 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~---~~~~~~~~~ 292 (1291)
.+.++|||||.+|...+..+++.+|++|||+|+.+|+.+|+.+++++++..++|+++++||+|+.... ......+.+
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 48899999999999988999999999999999999999999999999999999999999999986311 111111111
Q ss_pred --------HHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 293 --------YKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 293 --------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..+.+....+..-+...|+.........+++...++ ++.||.+|.|.+
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~i-------VpVSA~tGeGid 205 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAI-------IPISAITGEGIP 205 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceE-------EEeecCCCCChh
Confidence 112222222223345556543322222234444444 788999987775
No 220
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.78 E-value=1.1e-08 Score=128.93 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=64.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++|+|+|||||..|...+..+++.+|++|||||+.+|+.+||.++++.++..++|+|+|+||+|+..
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999864
No 221
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.78 E-value=1.9e-08 Score=130.58 Aligned_cols=160 Identities=20% Similarity=0.101 Sum_probs=105.0
Q ss_pred CCcccccceeEEecccccCCCccc--cc---cCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC
Q psy15088 178 CEEPIRNVKFKIREGNLNSSPSIY--CS---NKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252 (1291)
Q Consensus 178 ~~E~~~Gv~~~l~D~~lht~as~~--~~---~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~ 252 (1291)
++....|||-.+.-..+..+..-. .. ......+ -..++++|||||.+|...+..+.+.+|++++|||+.+|+
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~---~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi 563 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIK---IPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF 563 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCC---cCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC
Confidence 567788999988776554432110 00 0011111 124899999999999988888899999999999999999
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHH----HHHHHHHH-------HHHHHHHhcCCCCcCCcccc
Q psy15088 253 MLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYY----KIKHIIDE-------INGLLRYLLIDDDREDGDEE 321 (1291)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~----~~~~~~~~-------v~~~~~~~~~~~~~~~~~~~ 321 (1291)
++|+.++++.++..++|+|+|+||+|+...........+.. ..++..++ +..-+..+|+.........+
T Consensus 564 ~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d 643 (1049)
T PRK14845 564 KPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQD 643 (1049)
T ss_pred CHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhh
Confidence 99999999999999999999999999853111000011211 11222222 22235667765543333344
Q ss_pred ccccchhhcccCcccccCcccccCCC
Q psy15088 322 MGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 322 ~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
++...++ +++||.+|.|.+
T Consensus 644 ~~~~v~i-------VpVSA~tGeGId 662 (1049)
T PRK14845 644 FTRTVAI-------VPVSAKTGEGIP 662 (1049)
T ss_pred cCCCceE-------EEEEcCCCCCHH
Confidence 4555555 788999988875
No 222
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.78 E-value=2.1e-08 Score=120.71 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCCCcccccceeEEecccccCC--Cc----cccccCC-Cce---eeecCceeEEecCCCccccHHHHHHHhhhcCcEEEE
Q psy15088 176 PLCEEPIRNVKFKIREGNLNSS--PS----IYCSNKS-HSW---EIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLF 245 (1291)
Q Consensus 176 pL~~E~~~Gv~~~l~D~~lht~--as----~~~~~~~-~~~---~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~v 245 (1291)
-..+|..||+|+.+.-+.+.-. .. ..+.... ... .....+.++|+|||||.+|..++..++..+|++|+|
T Consensus 36 ~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llV 115 (411)
T PRK04000 36 RHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILV 115 (411)
T ss_pred cCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEE
Confidence 3457999999999765433211 00 0010000 000 000025799999999999999999999999999999
Q ss_pred EECCCCC-chhHHHHHHHHHHcCCc-EEEEEEccCccc
Q psy15088 246 VDAAEGV-MLNTERLLKHAVQEKMA-ITLCVNKIDRLM 281 (1291)
Q Consensus 246 VD~~~g~-~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~ 281 (1291)
||+.+|+ .+++.+++..++..+++ +++|+||+|...
T Consensus 116 VDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 116 IAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred EECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 9999998 89999999999888874 788899999864
No 223
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.76 E-value=1.8e-08 Score=99.47 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=71.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+|+|.+++|||||+|+|++.....+...+ +.|.......+.+ .+..+.++||||..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~-----------------~~T~~~~~~~~~~-----~~~~~~~vDtpG~~ 58 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIP-----------------GTTRDPVYGQFEY-----NNKKFILVDTPGIN 58 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSST-----------------TSSSSEEEEEEEE-----TTEEEEEEESSSCS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccc-----------------cceeeeeeeeeee-----ceeeEEEEeCCCCc
Confidence 4899999999999999999975433333332 6676664444445 67888999999983
Q ss_pred cc-----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 482 VT-----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 482 ~~-----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
.. ..+..+..+|++++|+|+......+.+.+.+... .++|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~ 112 (116)
T PF01926_consen 59 DGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIIL 112 (116)
T ss_dssp SSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEE
Confidence 21 2444556889999999987755666677777664 5566654
No 224
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.75 E-value=2.2e-08 Score=106.46 Aligned_cols=93 Identities=31% Similarity=0.405 Sum_probs=73.5
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
+..|+.+|+++......++-. ..... +..++++||||+.+|...+..+++.+|++|+|+|+..+...++
T Consensus 40 ~~~~~~~g~t~~~~~~~~~~~--------~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~ 108 (179)
T cd01890 40 MDLERERGITIKAQTVRLNYK--------AKDGQ---EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQT 108 (179)
T ss_pred ChhHHHCCCeEecceEEEEEe--------cCCCC---cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhh
Confidence 335677888886544332211 00001 4478899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
...+..+...++|+++|+||+|+.
T Consensus 109 ~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 109 LANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCC
Confidence 888888878899999999999985
No 225
>PRK14531 adenylate kinase; Provisional
Probab=98.75 E-value=4.5e-09 Score=112.65 Aligned_cols=90 Identities=30% Similarity=0.606 Sum_probs=76.7
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
+|++|||||+..|++.|...+... ...+.++++++|++.+.+|+..|+ |.||+++.+++|+..|...+.||+.+
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~-----r~dD~~e~i~~Rl~~y~~~~~pv~~~ 155 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG-----RADDNEAVIRNRLEVYREKTAPLIDH 155 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998887554432 234558899999999999999984 78999999999999999999999999
Q ss_pred ecchhhhhhhchhHHH
Q psy15088 696 FEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 696 sa~k~~~~~~~g~~~L 711 (1291)
|..++++..++|.+.+
T Consensus 156 y~~~~~~~~id~~~~~ 171 (183)
T PRK14531 156 YRQRGLLQSVEAQGSI 171 (183)
T ss_pred HHhcCCEEEEECCCCH
Confidence 9988888888887653
No 226
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.75 E-value=2e-08 Score=105.50 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=78.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|++........ .+++|+......+.+ ++..++++||||
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~iiDtpG 59 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-----------------IAGTTRDSIDVPFEY-----DGKKYTLIDTAG 59 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-----------------CCCCccCceeeEEEE-----CCeeEEEEECCC
Confidence 3589999999999999999998764333221 236676665555555 577899999999
Q ss_pred cccc-------------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVT-------------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~-------------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+... .++.....+|.+++|+|+..+...+...+...+...+.|.++ ++|
T Consensus 60 ~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~ii--v~n 121 (174)
T cd01895 60 IRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVI--VVN 121 (174)
T ss_pred CccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEE--EEe
Confidence 7321 123345578999999999998877787777777777777765 455
No 227
>KOG0466|consensus
Probab=98.74 E-value=1.8e-08 Score=109.36 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=80.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccc---c------------
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLP---D------------ 464 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~------------ 464 (1291)
..||+-+||+-|||||++.++.+-. +=..+.|.||.|||+..+..-... +
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~---------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVH---------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeecceeccccCcceeeeeeccce---------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 3599999999999999999875432 112456889999998765432211 0
Q ss_pred --------------cCC---CCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-cchhhHhhHHHHHhhcCccc
Q psy15088 465 --------------VKG---KNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-WDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 465 --------------~~~---~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-~~~qt~~~~~~~~~~~~~~~ 524 (1291)
.++ --+++.++|+|||.... +|.++...|.++++|.+.+. .++||-+++....-+.++++
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 000 01468899999997543 77777778999999988877 69999998877777777765
No 228
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.74 E-value=1.3e-08 Score=124.09 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=84.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+|+|++|+|||||+|+|++....++.... |+|++.......| .+..++++||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~-----------------g~t~d~~~~~~~~-----~~~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTP-----------------GVTRDRKYGDAEW-----GGREFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCC-----------------CcccCceEEEEEE-----CCeEEEEEECCCCC
Confidence 4899999999999999999977654444333 8888887777778 78899999999983
Q ss_pred cc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. ....++..+|++++|+|+..++...+..+.+...+.++|.++ ++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piil--VvN 115 (429)
T TIGR03594 59 EDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVIL--VAN 115 (429)
T ss_pred CcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEE--EEE
Confidence 21 144566788999999999999999998888888777888765 555
No 229
>KOG0461|consensus
Probab=98.74 E-value=3.8e-08 Score=108.62 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=99.7
Q ss_pred ccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEEC
Q psy15088 169 QWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDA 248 (1291)
Q Consensus 169 ~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~ 248 (1291)
-.|.+.-|-.-| ||+|.+|....+...+...... ++ .-.|+|||||||...+..++.+....|..++|||+
T Consensus 33 TaAFDk~pqS~e--RgiTLDLGFS~~~v~~parLpq----~e---~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv 103 (522)
T KOG0461|consen 33 TAAFDKHPQSTE--RGITLDLGFSTMTVLSPARLPQ----GE---QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDV 103 (522)
T ss_pred chhhccCCcccc--cceeEeecceeeecccccccCc----cc---cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEeh
Confidence 346666665444 9999999887776554332211 11 12789999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy15088 249 AEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLID 312 (1291)
Q Consensus 249 ~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 312 (1291)
..|.++||.+.+-......++.++|+||+|..-.. .-...+.+....+...+++-+|+
T Consensus 104 ~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~------qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 104 QKGKQTQTAECLIIGELLCKKLVVVINKIDVLPEN------QRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred hcccccccchhhhhhhhhccceEEEEeccccccch------hhhhHHHHHHHHHHHHHHhcCcC
Confidence 99999999999999888899999999999976311 11235666777788888877763
No 230
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.74 E-value=7.1e-09 Score=114.44 Aligned_cols=86 Identities=29% Similarity=0.558 Sum_probs=72.7
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc------------------------------
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA------------------------------ 665 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~------------------------------ 665 (1291)
.+|++|||||+..|+..+... ...+.+++++++++++++|+++|..
T Consensus 87 ~g~iLDGfPRt~~Qa~~l~~~----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~ 162 (229)
T PTZ00088 87 KGFILDGFPRNLKQCKELGKI----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCE 162 (229)
T ss_pred ceEEEecCCCCHHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccc
Confidence 389999999999998877532 2355678999999999999988741
Q ss_pred ------CCCCCCCCCHHHHHHHHhhccccccceEEeecchhh-hhhh
Q psy15088 666 ------EGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNL-VKRF 705 (1291)
Q Consensus 666 ------~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~-~~~~ 705 (1291)
.+.+|.||+++.+++||+.|..++.||+.+|..+++ +..+
T Consensus 163 ~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~ 209 (229)
T PTZ00088 163 GCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDF 209 (229)
T ss_pred ccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEE
Confidence 124799999999999999999999999999999998 7666
No 231
>PRK15494 era GTPase Era; Provisional
Probab=98.71 E-value=1.8e-08 Score=118.23 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=78.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++|+|||||+++|++....++++.. ++|++.....+.+ +++.++|+|||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~-----------------~tTr~~~~~~~~~-----~~~qi~~~DTp 108 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKV-----------------QTTRSIITGIITL-----KDTQVILYDTP 108 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCC-----------------CCccCcEEEEEEe-----CCeEEEEEECC
Confidence 4469999999999999999999977654444433 6666554444455 67889999999
Q ss_pred Cccc-cc---------ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPV-TL---------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~-~~---------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|... +. +...+..||++++|+|+..+++..+..+.......+.|.++ ++|
T Consensus 109 G~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~Il--ViN 168 (339)
T PRK15494 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIF--LLN 168 (339)
T ss_pred CcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEE--EEE
Confidence 9731 11 22345678999999999888877777777776666777764 566
No 232
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.70 E-value=2e-08 Score=103.92 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=73.5
Q ss_pred EEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcccc
Q psy15088 404 ALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVT 483 (1291)
Q Consensus 404 ~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~ 483 (1291)
+++|++|+|||||+++|+......... ..++|.+.......+ .++.+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-----------------~~~~t~~~~~~~~~~-----~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-----------------TPGVTRDRIYGEAEW-----GGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-----------------CCCceeCceeEEEEE-----CCeEEEEEECCCCCCc
Confidence 579999999999999998664222211 126666655555555 6789999999999653
Q ss_pred cc----------cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 484 LL----------LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 484 ~~----------l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. ......+|++++++|+..+++.++..+.......+.|.++ ++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piii--v~n 113 (157)
T cd01894 59 DEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVIL--VVN 113 (157)
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEE--EEE
Confidence 22 3345678999999999888777777777777667777765 555
No 233
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.70 E-value=5.3e-08 Score=104.13 Aligned_cols=68 Identities=40% Similarity=0.568 Sum_probs=63.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..++++||||+.++......+++.+|++++|+|+.++...++.+.+..+++.++|+++|+||+|...
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 34789999999999999999999999999999999999999999999999999999999999999864
No 234
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.68 E-value=3.2e-08 Score=112.89 Aligned_cols=104 Identities=14% Similarity=0.047 Sum_probs=71.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+++|++|+|||||+|+|++....++++.+ ++|++........ .+..+.|+||||+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~-----------------~TTr~~i~~i~~~-----~~~qii~vDTPG~~ 59 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKA-----------------QTTRNRISGIHTT-----GASQIIFIDTPGFH 59 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCC-----------------CcccCcEEEEEEc-----CCcEEEEEECcCCC
Confidence 6899999999999999999988655555544 6666543222222 45679999999973
Q ss_pred cc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. .....+..+|++++|+|+......+ ..+.......++|.++ ++|
T Consensus 60 ~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~il--V~N 115 (270)
T TIGR00436 60 EKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVL--TRN 115 (270)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEE--EEE
Confidence 21 1234567889999999998764433 4455555556667664 455
No 235
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.68 E-value=7.8e-08 Score=111.82 Aligned_cols=171 Identities=19% Similarity=0.181 Sum_probs=106.7
Q ss_pred EecCCCcc-ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHH
Q psy15088 219 KCLPPGHV-NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKH 297 (1291)
Q Consensus 219 liDtpG~~-~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~ 297 (1291)
+-+-|||. ++..++..-+..+|+++-||||++-.......+-+++. +++.++|+||+|.... .. ..+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~-------~~---~~~ 81 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPK-------EV---TKK 81 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCH-------HH---HHH
Confidence 34568986 47788999999999999999999999888888887765 4555999999998741 11 122
Q ss_pred HHHHHHHHHHHh-cCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccc
Q psy15088 298 IIDEINGLLRYL-LIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLK 376 (1291)
Q Consensus 298 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~ 376 (1291)
+.+ .+... +. +.++.++.++.+.. .+.. .+...
T Consensus 82 W~~----~~~~~~~~----------------------~~~~v~~~~~~~~~-----------~i~~-~~~~~-------- 115 (322)
T COG1161 82 WKK----YFKKEEGI----------------------KPIFVSAKSRQGGK-----------KIRK-ALEKL-------- 115 (322)
T ss_pred HHH----HHHhcCCC----------------------ccEEEEeecccCcc-----------chHH-HHHHH--------
Confidence 221 11111 11 01333444332221 0000 00000
Q ss_pred cccCCCcccchHHHhhhcC--CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceee
Q psy15088 377 EQDLPDTVYNMEFLADMMD--TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454 (1291)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~--~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~ 454 (1291)
..+.+..+.. ...+..++.|+|=||+|||||+|+|+++..+.+++.+ |+|..
T Consensus 116 ---------~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-----------------G~Tk~ 169 (322)
T COG1161 116 ---------SEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-----------------GTTKG 169 (322)
T ss_pred ---------HHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-----------------ceecc
Confidence 0011111111 1112246999999999999999999999887777666 88877
Q ss_pred eccceecccccCCCCeEEEEEeCCCcc
Q psy15088 455 ASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
...+.+. ..+.|+||||..
T Consensus 170 ~q~i~~~--------~~i~LlDtPGii 188 (322)
T COG1161 170 IQWIKLD--------DGIYLLDTPGII 188 (322)
T ss_pred eEEEEcC--------CCeEEecCCCcC
Confidence 6655443 348999999984
No 236
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.66 E-value=5.2e-08 Score=103.42 Aligned_cols=77 Identities=38% Similarity=0.714 Sum_probs=70.0
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
+|++|||||+..|+..+...+.+. ..++++.+++++++.++.|+..+.. |+||+++.+++|+..|+.++.|++.+
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R~~~y~~~~~pli~~ 155 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKRLKVYHEQTAPLIEY 155 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHHHHHHHhcccchhhh
Confidence 699999999999999888877763 4678899999999999999998865 89999999999999999999999999
Q ss_pred ec
Q psy15088 696 FE 697 (1291)
Q Consensus 696 sa 697 (1291)
|+
T Consensus 156 y~ 157 (178)
T COG0563 156 YS 157 (178)
T ss_pred he
Confidence 98
No 237
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.63 E-value=7.2e-08 Score=101.16 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=74.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+|+|++|+|||||+++|....-.. ...+++|.+.....+.+. ...++.++++||||+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~--~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA------------------GEAGGITQHIGAFEVPAE--VLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc------------------ccCCCeEEeeccEEEecc--cCCcceEEEEeCCCcH
Confidence 68999999999999999998543111 122355655443333331 0147889999999996
Q ss_pred cccc--cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+.. ......+|++++|+|+..+...++...+......++|.++ ++|
T Consensus 62 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~iv--v~N 110 (168)
T cd01887 62 AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIV--ALN 110 (168)
T ss_pred HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEE--EEE
Confidence 5432 2234578999999999988778888877777777888765 555
No 238
>PRK14527 adenylate kinase; Provisional
Probab=98.62 E-value=2.2e-08 Score=108.07 Aligned_cols=94 Identities=30% Similarity=0.666 Sum_probs=79.0
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
+|++||||++..|++.|...+... .....+++++++++++.+|+.+|+. ..+|.||+++.+++|+..|+..+.||+.+
T Consensus 85 ~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~-~~~r~dd~~~~~~~R~~~y~~~~~~v~~~ 163 (191)
T PRK14527 85 RVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR-QEGRSDDNEETVRRRQQVYREQTQPLVDY 163 (191)
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc-cCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 699999999999987776544332 2344578899999999999999874 45799999999999999999999999999
Q ss_pred ecchhhhhhhchhHHH
Q psy15088 696 FEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 696 sa~k~~~~~~~g~~~L 711 (1291)
|..++.+..++|.+++
T Consensus 164 y~~~~~~~~id~~~~~ 179 (191)
T PRK14527 164 YEARGHLKRVDGLGTP 179 (191)
T ss_pred HHhcCCEEEEECCCCH
Confidence 9999988889887654
No 239
>PRK14530 adenylate kinase; Provisional
Probab=98.62 E-value=2.6e-08 Score=109.68 Aligned_cols=91 Identities=29% Similarity=0.536 Sum_probs=75.9
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSGR 670 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~r 670 (1291)
+|++||||++..|++.+... ...+.+++++++.+.+++|+.+|.. ....|
T Consensus 84 ~~IldG~pr~~~q~~~l~~~----~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R 159 (215)
T PRK14530 84 GFVLDGYPRNLEQAEYLESI----TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR 159 (215)
T ss_pred CEEEcCCCCCHHHHHHHHHh----cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence 79999999998887765432 1345688999999999999988753 23579
Q ss_pred CCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHH
Q psy15088 671 ADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSL 711 (1291)
Q Consensus 671 ~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~L 711 (1291)
.||+++.+++||..|..++.||+.+|..++.+..++|.+++
T Consensus 160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~ 200 (215)
T PRK14530 160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTP 200 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCH
Confidence 99999999999999999999999999988888888887653
No 240
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.61 E-value=2.3e-08 Score=110.07 Aligned_cols=94 Identities=34% Similarity=0.605 Sum_probs=80.0
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
+|++||||++..|+..+.+.+... ...+.+++++++++.+++|+.+|.. ...+
T Consensus 80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~ 159 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQ 159 (215)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccC
Confidence 799999999999988887665432 2345688999999999999998852 2457
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
|.||+++.+++||..|...+.|++.+|..++.+..++|.+.
T Consensus 160 r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~ 200 (215)
T PRK00279 160 RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGS 200 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCC
Confidence 99999999999999999999999999999888888888765
No 241
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.60 E-value=7.5e-08 Score=118.38 Aligned_cols=108 Identities=11% Similarity=0.082 Sum_probs=81.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
.+.+|+|+|++|+|||||+++|++....++...+ |+|++.....+.| .++.++++|||
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~-----------------gvT~d~~~~~~~~-----~~~~~~l~DT~ 94 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVP-----------------GVTRDRVSYDAEW-----NGRRFTVVDTG 94 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCC-----------------CCCEeeEEEEEEE-----CCcEEEEEeCC
Confidence 3468999999999999999999976544433333 8888876666666 67889999999
Q ss_pred Ccccc--------c--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVT--------L--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~--------~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|+... . +...+..||++|+|+|+..+.+..+..+.......++|.++ ++|
T Consensus 95 G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piil--V~N 154 (472)
T PRK03003 95 GWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVIL--AAN 154 (472)
T ss_pred CcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 97521 1 23356688999999999998777777777777777778765 555
No 242
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.59 E-value=7.5e-08 Score=123.94 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=84.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
..++|+|+|++|+|||||+++|++....++...+ |+|++.......| .++.++++|||
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p-----------------GvT~d~~~~~~~~-----~~~~~~liDT~ 331 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTP-----------------GVTRDRVSYDAEW-----AGTDFKLVDTG 331 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCC-----------------CeeEEEEEEEEEE-----CCEEEEEEeCC
Confidence 3569999999999999999999976544444333 8888877666667 68899999999
Q ss_pred Cccc--------cc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPV--------TL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~--------~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|... +. +..++..||++|+|+|+..++.+.+..+.......++|.++ ++|
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIl--V~N 391 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVL--AVN 391 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEE--EEE
Confidence 9742 11 33456788999999999999988888888887778888875 555
No 243
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.59 E-value=6.9e-08 Score=117.95 Aligned_cols=106 Identities=14% Similarity=0.069 Sum_probs=81.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+|+|++|+|||||+++|++....++.... |+|++.....+.| .+..+.++||||+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~-----------------~~t~d~~~~~~~~-----~~~~~~liDT~G~ 59 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTP-----------------GVTRDRIYGEAEW-----LGREFILIDTGGI 59 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCC-----------------CCcccceEEEEEE-----CCcEEEEEECCCC
Confidence 37999999999999999999876544433322 7787776666667 6789999999999
Q ss_pred cc--------cc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PV--------TL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~--------~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. .+ ...++..+|++++|+|+..+++..+..+.......++|.++ ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piil--v~N 117 (435)
T PRK00093 60 EPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVIL--VVN 117 (435)
T ss_pred CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEE--EEE
Confidence 64 11 23456688999999999999888777777777777777765 555
No 244
>PRK14532 adenylate kinase; Provisional
Probab=98.58 E-value=3.2e-08 Score=106.57 Aligned_cols=94 Identities=24% Similarity=0.496 Sum_probs=77.5
Q ss_pred CceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEE
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIK 694 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~ 694 (1291)
.+|++|||||+..|++.+...+... ..++.+++|++|++.+.+|+.+|.. ..+|.|++.+.+++|+..|...+.|++.
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~-~~~r~dd~~~~~~~Rl~~~~~~~~~i~~ 157 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFE-EQGRPDDNPEVFVTRLDAYNAQTAPLLP 157 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcC-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999998887655432 3456789999999999999998853 2478999999999999999999999999
Q ss_pred eecchhhhhhhchhHH
Q psy15088 695 FFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 695 ~sa~k~~~~~~~g~~~ 710 (1291)
+|...+.+..++|.+.
T Consensus 158 ~y~~~~~~~~id~~~~ 173 (188)
T PRK14532 158 YYAGQGKLTEVDGMGS 173 (188)
T ss_pred HHHhcCCEEEEECCCC
Confidence 8887777777777543
No 245
>COG1159 Era GTPase [General function prediction only]
Probab=98.57 E-value=1.8e-07 Score=103.91 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=61.0
Q ss_pred CceeEEecCCCccc--------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVN--------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~--------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.+|||||+.. ...++..++..+|++|||||+.++..+.++.+++.+++.+.|+|+++||+|...
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 45788999999753 346689999999999999999999999999999999998899999999999875
No 246
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.56 E-value=2.6e-07 Score=96.86 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=61.8
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..++++||||+..|......++..+|++++|+|+.++...++.+.++.++..++|+++|+||+|..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 4578999999999888778888999999999999999999999999999999999999999999986
No 247
>PRK00089 era GTPase Era; Reviewed
Probab=98.55 E-value=1e-07 Score=110.10 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=71.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+-+.|+++|++|+|||||+|+|++....+++..+ ++|+......... .+..+.++|||
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~-----------------~tt~~~i~~i~~~-----~~~qi~~iDTP 61 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-----------------QTTRHRIRGIVTE-----DDAQIIFVDTP 61 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCC-----------------CcccccEEEEEEc-----CCceEEEEECC
Confidence 3468999999999999999999987654443332 3333322111111 45789999999
Q ss_pred Ccccc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 479 ASPVT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 479 Gh~~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
|+... .+...+..+|++++|+|+..+++.....+.......+.|.++
T Consensus 62 G~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvil 118 (292)
T PRK00089 62 GIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVIL 118 (292)
T ss_pred CCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEE
Confidence 97321 133456688999999999987776677666666555666654
No 248
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.53 E-value=1.4e-07 Score=114.21 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=80.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+|+|++|+|||||+|+|++..+.+++..+ |+|++.....+.+ +++.++++||||+
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p-----------------gtTrd~~~~~i~~-----~g~~v~l~DTaG~ 261 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK-----------------GTTRDVVEGDFEL-----NGILIKLLDTAGI 261 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-----------------CcEEEEEEEEEEE-----CCEEEEEeeCCCc
Confidence 48999999999999999999988766665555 8898877777777 6889999999998
Q ss_pred ccc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
..+ ++...+..+|++++|+|+..+.+.++. ++......++|.++ ++|
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIl--V~N 318 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFIL--VLN 318 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEE--EEE
Confidence 421 234556788999999999887655554 55555445666654 555
No 249
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.52 E-value=2.2e-07 Score=100.87 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=67.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+||+++|++|+|||||+|+|++........ ..+|.|.+.......+ .++.+++|||||.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~----------------~~~~~T~~~~~~~~~~-----~~~~i~viDTPG~ 59 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL----------------SASSVTKTCQKESAVW-----DGRRVNVIDTPGL 59 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc----------------CCCCcccccceeeEEE-----CCeEEEEEECcCC
Confidence 589999999999999999999875432211 1237777776666666 7899999999998
Q ss_pred cccc-------------ccccccccceEEEEecCCCccchhhHhhHHHHH
Q psy15088 481 PVTL-------------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAA 517 (1291)
Q Consensus 481 ~~~~-------------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~ 517 (1291)
.+.. .......+|++++|+++.. +...++...+...
T Consensus 60 ~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~ 108 (196)
T cd01852 60 FDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQ 108 (196)
T ss_pred CCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHH
Confidence 4321 1112346688899998876 7776766655543
No 250
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.51 E-value=1.7e-07 Score=114.20 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=77.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||+|+|++....++...+ |+|++.....+.+ +++.++++||||+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-----------------gtT~d~~~~~i~~-----~g~~i~l~DT~G~ 273 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIA-----------------GTTRDVIEEHINL-----DGIPLRLIDTAGI 273 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-----------------CcccccEEEEEEE-----CCeEEEEEeCCCC
Confidence 38999999999999999999987655544443 8888877666666 6788999999998
Q ss_pred ccc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
..+ +++..+..||++++|+|+..+.+.+...++.. ..++|.++ ++|
T Consensus 274 ~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piii--V~N 329 (449)
T PRK05291 274 RETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIV--VLN 329 (449)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEE--EEE
Confidence 432 24455678999999999988776666666554 34556654 555
No 251
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.50 E-value=1.6e-07 Score=84.83 Aligned_cols=73 Identities=29% Similarity=0.448 Sum_probs=61.2
Q ss_pred eEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccccceee
Q psy15088 809 FQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTIT 885 (1291)
Q Consensus 809 ~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~ 885 (1291)
.++++|||||+|++||+|++++ +.+.. .....+|++|+.+++...+++..+.||+++++.|+++.+..++||+
T Consensus 2 ~v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 2 RVATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred EEEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 4899999999999999999977 43211 1245899999999999999999999999999999998555677774
No 252
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.50 E-value=2.5e-07 Score=95.52 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=69.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++|.+........ ..|+|.+.....+.+ .+..++++||||+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~i~DtpG~~ 60 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD-----------------IAGTTRDVIEESIDI-----GGIPVRLIDTAGIR 60 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC-----------------CCCCccceEEEEEEe-----CCEEEEEEECCCcC
Confidence 79999999999999999998764322221 126666655555555 57889999999985
Q ss_pred ccc----------ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VTL----------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~----------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
... .......+|++++++|+.........+.+.. ..+.|.++ ++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~--v~n 115 (157)
T cd04164 61 ETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIV--VLN 115 (157)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEE--EEE
Confidence 332 2234457899999999997654444444433 34455554 455
No 253
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=98.49 E-value=2.4e-07 Score=91.31 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=68.5
Q ss_pred eeeeeeeeccCCcceeeeeCCC--CeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEecc
Q psy15088 58 VAFCETVVETSSLKCFAETPNK--RNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGP 135 (1291)
Q Consensus 58 V~frETi~~~~~~~~~~~s~n~--~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp 135 (1291)
|.|||||+++.......++... ..++.++++|++.+-
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g~----------------------------------------- 39 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGS----------------------------------------- 39 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCCC-----------------------------------------
Confidence 7899999987664333344333 479999999986530
Q ss_pred CCCCCeEEEcCCCCCcccccchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCC
Q psy15088 136 EVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSP 198 (1291)
Q Consensus 136 ~~~g~Nil~~~t~~~~~~~~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~a 198 (1291)
.+.|.+.+.+ ...+++|.++|.+||+.|+..||| +.|+.++++.|.++.+|...
T Consensus 40 ----g~~f~~~~~~----~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ 93 (115)
T cd01684 40 ----GLQYESEVSL----GSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPV 93 (115)
T ss_pred ----CcEEEEEecC----CcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCC
Confidence 0233343322 235689999999999999999999 99999999999999999763
No 254
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.48 E-value=6.5e-08 Score=103.59 Aligned_cols=93 Identities=59% Similarity=1.037 Sum_probs=77.6
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
+|++||||++..|+..|...+......+.++++++|.+.+++|+..|+.. .+|.|++.+.+++|+..|...+.|++.+|
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~-~~r~dd~~e~~~~r~~~y~~~~~~i~~~~ 156 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS-SGRVDDNIESIKKRFRTYNEQTLPVIEHY 156 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888776543334556889999999999999998754 57888999999999999999999999988
Q ss_pred cchhhhhhhchhHH
Q psy15088 697 EAKNLVKRFNAEKS 710 (1291)
Q Consensus 697 a~k~~~~~~~g~~~ 710 (1291)
+..+.+..+++.++
T Consensus 157 ~~~~~~~~Id~~~~ 170 (183)
T TIGR01359 157 ENKGKVKEINAEGS 170 (183)
T ss_pred HhCCCEEEEECCCC
Confidence 87776677777644
No 255
>PLN02200 adenylate kinase family protein
Probab=98.48 E-value=8e-08 Score=106.79 Aligned_cols=89 Identities=43% Similarity=0.795 Sum_probs=75.4
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
+|++||||++..|+..|...+. ...+.+++++++++++.+|+.+|+. +|.||+.+.+++|++.|...+.|++.+|
T Consensus 122 ~~ILDG~Prt~~q~~~l~~~~~--~~pd~vi~Ld~~~e~~~~Rl~~R~~---~r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 122 KFLIDGFPRTEENRIAFERIIG--AEPNVVLFFDCPEEEMVKRVLNRNQ---GRVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred eEEecCCcccHHHHHHHHHHhc--cCCCEEEEEECCHHHHHHHHHcCcC---CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999988877765432 2356788999999999999999863 6889999999999999999999999999
Q ss_pred cchhhhhhhchhHH
Q psy15088 697 EAKNLVKRFNAEKS 710 (1291)
Q Consensus 697 a~k~~~~~~~g~~~ 710 (1291)
..++.+..++|.+.
T Consensus 197 ~~~~~~~~IDa~~~ 210 (234)
T PLN02200 197 SKKGKLYTINAVGT 210 (234)
T ss_pred HhcCCEEEEECCCC
Confidence 88887788887654
No 256
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.47 E-value=3.9e-07 Score=94.44 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred EEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccccc
Q psy15088 405 LVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTL 484 (1291)
Q Consensus 405 iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~ 484 (1291)
++|+.|+|||||++++.+.. .... ...|+|++.....+.+ .++.++++||||+..+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~-----------------~~~~~t~~~~~~~~~~-----~~~~~~liDtpG~~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVG-----------------NWPGVTVEKKEGRFKL-----GGKEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-cccc-----------------CCCCcccccceEEEee-----CCeEEEEEECCCccccC
Confidence 57999999999999997653 1111 1238888877777777 56889999999986433
Q ss_pred cc--------ccc--cccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 485 LL--------PDV--KGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 485 ~l--------~~~--~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. ..+ +.+|++++|+|+... .+...+...+...++|.++ ++|
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~ii--v~N 109 (158)
T cd01879 58 PYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVV--ALN 109 (158)
T ss_pred CCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEE--EEe
Confidence 21 111 478999999998763 2233444455556777765 666
No 257
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.47 E-value=4.8e-07 Score=93.50 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=60.3
Q ss_pred CceeEEecCCCccccHH--------HHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSD--------EVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~--------~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+.++||||+.++.. +....++.+|++++|+|+..+....+..+.+++++.++|+++|+||+|...
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 56899999999988543 556788999999999999999989999999999999999999999999864
No 258
>PRK09866 hypothetical protein; Provisional
Probab=98.47 E-value=5.5e-07 Score=109.15 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=59.2
Q ss_pred CceeEEecCCCccc-----cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC--cEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVN-----FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM--AITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~-----~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~--~~ilvvNKiD~~ 280 (1291)
...+.+|||||... +...+..++..||++|||||+..+....++.+++.+++.++ |+++|+||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 45788999999853 34567889999999999999999999999999999999885 999999999985
No 259
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.47 E-value=2.6e-07 Score=98.63 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=72.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcC-CcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTH-PGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~-~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
.+..+|+|+|+.++|||||+++|.+... ..+... .|.|.+... +.+ + ..+.++|
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~-----------------~~~t~~~~~--~~~-----~-~~~~liD 70 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT-----------------PGRTQLINF--FEV-----N-DGFRLVD 70 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-----------------CCcceEEEE--EEe-----C-CcEEEEe
Confidence 4567999999999999999999987631 111111 255554331 222 1 2689999
Q ss_pred CCCccc----------c-----cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 477 TPASPV----------T-----LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 477 TpGh~~----------~-----~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||+.. + ..++..+.++++++|+|+..++..++..+++.+...++|.++ ++|
T Consensus 71 tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pvii--v~n 137 (179)
T TIGR03598 71 LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLI--VLT 137 (179)
T ss_pred CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 999731 1 112333456789999999988988888888888777888765 556
No 260
>PRK01889 GTPase RsgA; Reviewed
Probab=98.46 E-value=4.1e-07 Score=107.39 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=39.5
Q ss_pred hhhcCcEEEEEECCCCCch-hHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 236 MRLCDGVVLFVDAAEGVML-NTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 236 ~~~~D~~l~vVD~~~g~~~-~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+|.+++|+++..++.+ ....++..++..++++++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 5678999999999877777 666777888899999999999999863
No 261
>KOG2423|consensus
Probab=98.45 E-value=7.8e-07 Score=100.16 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=100.5
Q ss_pred cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC--CcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHH
Q psy15088 228 FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK--MAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGL 305 (1291)
Q Consensus 228 ~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~--~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (1291)
...+....+..+|++|-|+||++.+......+-++++++. +-.|+|+||||+.- ..+- +.++..+...
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVP-------twvt---~~Wv~~lSke 272 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVP-------TWVT---AKWVRHLSKE 272 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeecccccc-------HHHH---HHHHHHHhhh
Confidence 4457778889999999999999999999999999999874 56888999999863 1121 1222221111
Q ss_pred HHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCccc
Q psy15088 306 LRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVY 385 (1291)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 385 (1291)
.-.+ . +-+|-.+.||.+ .+ |+-
T Consensus 273 yPTi-------------------A------fHAsi~nsfGKg-----------al----I~l------------------ 294 (572)
T KOG2423|consen 273 YPTI-------------------A------FHASINNSFGKG-----------AL----IQL------------------ 294 (572)
T ss_pred Ccce-------------------e------eehhhcCccchh-----------HH----HHH------------------
Confidence 1111 1 334555556654 10 100
Q ss_pred chHHHhhh--cCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccc
Q psy15088 386 NMEFLADM--MDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 386 ~~~~~~~~--~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
+.++ +.....-..|+|||-||+|||+++|.|-.+.-..+.+++ |-|--=..+++
T Consensus 295 ----lRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-----------------GETKVWQYItL--- 350 (572)
T KOG2423|consen 295 ----LRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-----------------GETKVWQYITL--- 350 (572)
T ss_pred ----HHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCC-----------------CcchHHHHHHH---
Confidence 0010 001112247999999999999999999888776666666 55432222222
Q ss_pred ccCCCCeEEEEEeCCCcc
Q psy15088 464 DVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~ 481 (1291)
-++|.||||||..
T Consensus 351 -----mkrIfLIDcPGvV 363 (572)
T KOG2423|consen 351 -----MKRIFLIDCPGVV 363 (572)
T ss_pred -----HhceeEecCCCcc
Confidence 3578999999984
No 262
>PRK02496 adk adenylate kinase; Provisional
Probab=98.44 E-value=9.4e-08 Score=102.58 Aligned_cols=89 Identities=30% Similarity=0.599 Sum_probs=73.7
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
+|++|||||+..|+..+...+... ...+.+++++++++.+.+|+..|+ |.||+++.+++|+..|...+.||+.+
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~-----~~dd~~~~~~~r~~~y~~~~~~v~~~ 155 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG-----RKDDTEEVIRRRLEVYREQTAPLIDY 155 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987766444321 235678899999999999999884 56889999999999999999999999
Q ss_pred ecchhhhhhhchhHH
Q psy15088 696 FEAKNLVKRFNAEKS 710 (1291)
Q Consensus 696 sa~k~~~~~~~g~~~ 710 (1291)
|..++.+..++|.++
T Consensus 156 ~~~~~~~~~Ida~~~ 170 (184)
T PRK02496 156 YRDRQKLLTIDGNQS 170 (184)
T ss_pred HHhcCCEEEEECCCC
Confidence 988777778887654
No 263
>KOG1144|consensus
Probab=98.44 E-value=2.2e-06 Score=102.98 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=75.9
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc-----------C--C
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV-----------K--G 467 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-----------~--~ 467 (1291)
.-+||+||+|.|||-|.+.+-+.+ +.- +. .-|||.+.....|...+. + .
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tN-Vqe--ge---------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTN-VQE--GE---------------AGGITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccc-ccc--cc---------------ccceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 468999999999999999986543 211 11 116666655554443210 0 1
Q ss_pred CCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 468 KNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+---+.+||||||..|- .-++...+|.+|+|+|...|+++||..-++.....+.| ||..+|
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp--FivALN 600 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP--FIVALN 600 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC--eEEeeh
Confidence 22358899999997554 44567788999999999999999998887777665544 334555
No 264
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.43 E-value=3.7e-07 Score=96.02 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=53.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCe-EEEEEeCCCc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNY-LMNIFDTPAS 480 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~-~~~liDTpGh 480 (1291)
||+|+|++|+|||||+++|.+... .+...+ ++|++.....+.+ .++ .++|+||||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~-----------------~~t~~~~~~~~~~-----~~~~~~~l~DtpG~ 58 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYP-----------------FTTLVPNLGVVRV-----DDGRSFVVADIPGL 58 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCC-----------------ccccCCcceEEEc-----CCCCeEEEEecCcc
Confidence 799999999999999999986432 111111 4454444333444 344 8999999997
Q ss_pred ccc---------cccccccccceEEEEecCCCc
Q psy15088 481 PVT---------LLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~---------~~l~~~~~ad~~v~vida~~g 504 (1291)
... ..++.+..+|++++|+|+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~ 91 (170)
T cd01898 59 IEGASEGKGLGHRFLRHIERTRLLLHVIDLSGD 91 (170)
T ss_pred cCcccccCCchHHHHHHHHhCCEEEEEEecCCC
Confidence 311 122334568999999999865
No 265
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=98.40 Aligned_cols=146 Identities=22% Similarity=0.184 Sum_probs=84.8
Q ss_pred cCcEEEEEECCCCC--chhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcC
Q psy15088 239 CDGVVLFVDAAEGV--MLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDRE 316 (1291)
Q Consensus 239 ~D~~l~vVD~~~g~--~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 316 (1291)
.|-+++||.+.+.- ..+-.+.+-.+...|+.+++++||+|+...+ +... ++......++|..
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~------~~~~------~~~~~~y~~~gy~---- 143 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE------EAAV------KELLREYEDIGYP---- 143 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch------HHHH------HHHHHHHHhCCee----
Confidence 67888899887642 1222334455677899999999999997521 2211 2333344445531
Q ss_pred CccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCC
Q psy15088 317 DGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDT 396 (1291)
Q Consensus 317 ~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1291)
+ +..|+.++.|.. .+ .+.++
T Consensus 144 -----------v-------~~~s~~~~~~~~-----------~l-~~~l~------------------------------ 163 (301)
T COG1162 144 -----------V-------LFVSAKNGDGLE-----------EL-AELLA------------------------------ 163 (301)
T ss_pred -----------E-------EEecCcCcccHH-----------HH-HHHhc------------------------------
Confidence 1 445555432221 11 00110
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
-+..+++|+.++|||||+|+|+.+...-+...+ ....+-|-||..+....|.. .+ .+||
T Consensus 164 ---~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS----------~~~~rGkHTTt~~~l~~l~~-----gG---~iiD 222 (301)
T COG1162 164 ---GKITVLLGQSGVGKSTLINALLPELNQKTGEIS----------EKLGRGRHTTTHVELFPLPG-----GG---WIID 222 (301)
T ss_pred ---CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhc----------ccCCCCCCccceEEEEEcCC-----CC---EEEe
Confidence 125689999999999999999976543332222 11234456776666555432 22 4899
Q ss_pred CCCcc
Q psy15088 477 TPASP 481 (1291)
Q Consensus 477 TpGh~ 481 (1291)
|||.+
T Consensus 223 TPGf~ 227 (301)
T COG1162 223 TPGFR 227 (301)
T ss_pred CCCCC
Confidence 99976
No 266
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.38 E-value=5.4e-07 Score=99.89 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=74.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.+.|+|+|++|+|||||+++|+........ ....|. + ++.. .++..++++||||
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~----------------~~~~g~-i-----~i~~----~~~~~i~~vDtPg 92 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNI----------------SDIKGP-I-----TVVT----GKKRRLTFIECPN 92 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcc----------------cccccc-E-----EEEe----cCCceEEEEeCCc
Confidence 358999999999999999999876321100 011242 1 1111 1578899999999
Q ss_pred cccccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+. ..++..+..+|++++++|+..++..++..++..+...|+|.++ .++|
T Consensus 93 ~~-~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi-~Vvn 141 (225)
T cd01882 93 DI-NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVM-GVLT 141 (225)
T ss_pred hH-HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEE-EEEe
Confidence 75 3445566788999999999999999999999988888888753 2444
No 267
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.38 E-value=1.9e-07 Score=100.85 Aligned_cols=94 Identities=31% Similarity=0.596 Sum_probs=77.3
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccC------------------CCCCCCCCHHH
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAE------------------GSGRADDNEES 677 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~------------------~~~r~dd~~e~ 677 (1291)
.+|++||||++..|++.|...+........+++++++++++.+|+..|... ..+|.||+++.
T Consensus 78 ~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~ 157 (194)
T cd01428 78 KGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEET 157 (194)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHH
Confidence 379999999999888887765542223456789999999999999998643 24688999999
Q ss_pred HHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 678 LKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 678 i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
+++|+..|...+.|++.+|...+.+..++|.+
T Consensus 158 i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~ 189 (194)
T cd01428 158 IKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSG 189 (194)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCCEEEEECCC
Confidence 99999999999999999999888777777753
No 268
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=98.38 E-value=6.2e-07 Score=88.66 Aligned_cols=89 Identities=18% Similarity=0.368 Sum_probs=67.0
Q ss_pred eeeeeeccCCcceeee--e-CCCC-eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEecc
Q psy15088 60 FCETVVETSSLKCFAE--T-PNKR-NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGP 135 (1291)
Q Consensus 60 frETi~~~~~~~~~~~--s-~n~~-~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp 135 (1291)
|||||+++.+.....+ + ..+| .+++++++|++.+
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g------------------------------------------ 38 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRG------------------------------------------ 38 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCC------------------------------------------
Confidence 8999998755222222 1 1222 7888899887542
Q ss_pred CCCCCeEEEcCCCCCcccccchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 136 EVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 136 ~~~g~Nil~~~t~~~~~~~~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
..|.++|.+.+ ..+++++.++|.+||++|+..|||+++|++|++|.|.++.+|..
T Consensus 39 ---~g~~~~~~~~~----~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~ 93 (116)
T cd01434 39 ---SGFEFVNKIVG----GAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDV 93 (116)
T ss_pred ---CCCEEEEeccC----CccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecC
Confidence 02456665533 34679999999999999999999999999999999999999875
No 269
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.37 E-value=8.2e-07 Score=92.25 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=68.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+.|+++|.+|+|||||++++++..-....... ++|.......+.. .+..+.++||||+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~liDtpG~ 61 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-----------------QTTRNRIRGIYTD-----DDAQIIFVDTPGI 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCC-----------------CceeceEEEEEEc-----CCeEEEEEECCCC
Confidence 48999999999999999999865322211111 1222211111112 4678999999998
Q ss_pred ccc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
... .....+..+|.+++++|+...+...+..+.......+.|.+| ++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ii--v~n 119 (168)
T cd04163 62 HKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVIL--VLN 119 (168)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEE--EEE
Confidence 522 123345677999999999887655666666666666667665 455
No 270
>KOG2484|consensus
Probab=98.35 E-value=2.4e-06 Score=97.40 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=47.7
Q ss_pred ecCCCcc-ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHH-HcC-CcEEEEEEccCccc
Q psy15088 220 CLPPGHV-NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAV-QEK-MAITLCVNKIDRLM 281 (1291)
Q Consensus 220 iDtpG~~-~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~-~~~-~~~ilvvNKiD~~~ 281 (1291)
.|-+++. -|.++....+..+|++|=|+||++.+.....++=+++. ..| ++.|||+||+|..-
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred ccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCC
Confidence 4455543 46778899999999999999999988666666655554 334 88999999999864
No 271
>KOG1424|consensus
Probab=98.33 E-value=1.8e-06 Score=101.23 Aligned_cols=55 Identities=25% Similarity=0.210 Sum_probs=46.4
Q ss_pred ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 227 NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 227 ~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
++-.|..+.+.-+|++|.+|||+..+--....+-+++... .|..+|+|||.|+..
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~ 219 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLP 219 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCC
Confidence 4678899999999999999999999877667777777664 467899999999975
No 272
>KOG0052|consensus
Probab=98.33 E-value=2.8e-07 Score=105.50 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=88.9
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCc-------------cccccccccccccccccCceeeeccceecccccCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------------EEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKG 467 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~ 467 (1291)
+||+++||+|+||||++. +..+.+..+.. ....++.+|.+..|++||++|+.+.- ..++
T Consensus 8 ~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~-----~~~t 79 (391)
T KOG0052|consen 8 INIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW-----KFET 79 (391)
T ss_pred cceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEee-----cccc
Confidence 599999999999999988 43443322211 01235789999999999999776643 3445
Q ss_pred CCeEEEEEeCCCccccc--ccccccccceEEEEecC-CCcc------chhhHhhHHHHHhhcCccch
Q psy15088 468 KNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDT-PGMW------DIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida-~~g~------~~qt~~~~~~~~~~~~~~~f 525 (1291)
..+.+++||.|||.++. +..+..+||++++++.+ .++| ..|+++++..+...|...++
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qli 146 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 146 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeee
Confidence 88999999999998765 77778899999999988 3333 78999999888877765544
No 273
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.32 E-value=7.8e-07 Score=91.19 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=62.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.||+++|++++|||||+++|+... ... +..+++|.+.....+.+. +..+.+.++||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT-----------------EYKPGTTRNYVTTVIEED---GKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC-----------------cCCCCceeeeeEEEEEEC---CEEEEEEEEECCCc
Confidence 489999999999999999998664 221 122366666555444441 12388999999999
Q ss_pred cccc---------ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVTL---------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~~---------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
..+. +...+..+|.++.|+++......+...+...+.. +.|.++ ++|
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~iv--v~n 116 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIIL--VGN 116 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEE--EEE
Confidence 6543 2222223344444444444433444444444432 566654 444
No 274
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.30 E-value=4.2e-06 Score=87.72 Aligned_cols=68 Identities=24% Similarity=0.238 Sum_probs=57.5
Q ss_pred CceeEEecCCCccccH-----------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFS-----------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~-----------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..++++||||+.+.. .+...+++.+|++++|+|+..+...++..+++++...++|+++++||+|+..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 4578999999975431 2345678899999999999999999998999998888999999999999864
No 275
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.30 E-value=2.6e-06 Score=97.20 Aligned_cols=66 Identities=21% Similarity=0.133 Sum_probs=54.1
Q ss_pred CceeEEecCCCcccc--------HHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNF--------SDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~--------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+.++.++||||+.+. ...+..+++.+|++++|+|+..+...+ +.++..+++.++|+++|+||+|..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 346889999998542 234567899999999999999876554 677888888899999999999985
No 276
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.29 E-value=8.7e-07 Score=104.38 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=61.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
....|+|+|++|+|||||+|+|++.. .++.... |+|++.....+.++ .+..+.|+|||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~-----------------~tT~d~~~~~i~~~----~~~~i~l~DT~ 245 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQL-----------------FATLDPTTRRLDLP----DGGEVLLTDTV 245 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCC-----------------ccccCCEEEEEEeC----CCceEEEEecC
Confidence 34589999999999999999998764 3322222 66666655555553 46789999999
Q ss_pred Cc-c---------cccccccccccceEEEEecCCCcc
Q psy15088 479 AS-P---------VTLLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 479 Gh-~---------~~~~l~~~~~ad~~v~vida~~g~ 505 (1291)
|. . +..++..+..||++++|+|+....
T Consensus 246 G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~ 282 (351)
T TIGR03156 246 GFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPD 282 (351)
T ss_pred cccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCc
Confidence 97 1 122445567899999999998764
No 277
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.29 E-value=1.6e-06 Score=91.00 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=52.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
|+|+++|++|+|||||+++|....... .. ..++|.......+.+ ++..++|+||||+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-~~-----------------~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~ 57 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-AP-----------------YPFTTKSLFVGHFDY-----KYLRWQVIDTPGL 57 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-CC-----------------CCCcccceeEEEEcc-----CceEEEEEECCCc
Confidence 589999999999999999998653210 00 114444333223333 5789999999998
Q ss_pred ccc----------cccccc-cccceEEEEecCCCc
Q psy15088 481 PVT----------LLLPDV-KGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~----------~~l~~~-~~ad~~v~vida~~g 504 (1291)
... .++.+. ..+|++++|+|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~ 92 (168)
T cd01897 58 LDRPLEERNTIEMQAITALAHLRAAVLFLFDPSET 92 (168)
T ss_pred CCccccCCchHHHHHHHHHHhccCcEEEEEeCCcc
Confidence 421 112111 135788999998764
No 278
>KOG1143|consensus
Probab=98.28 E-value=1.2e-05 Score=90.09 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=77.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccc-cccccccccccCceeeeccceecccc----------------
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLR-YTDTLFTEQERGVSIKASPVTLLLPD---------------- 464 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~-~~D~~~~E~erGiTi~~~~~~~~~~~---------------- 464 (1291)
++|++|..|+|||||.+-|....-.. ..+.++ -+=.++.|..-|-|-..+.-.+-+.+
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDn-----G~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDN-----GNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccC-----CCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 89999999999999998876443110 111122 12335566666765332222222211
Q ss_pred cCCCCeEEEEEeCCCccccc--cccccc--ccceEEEEecCCCccchhhHhhHHHHHhhcCccc
Q psy15088 465 VKGKNYLMNIFDTPASPVTL--LLPDVK--GKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 465 ~~~~~~~~~liDTpGh~~~~--~l~~~~--~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
.+..++.++|||-+||.-+. ++.++. --+.+++|+.|..|+...|++++..+...++|-.
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfF 307 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFF 307 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeE
Confidence 23467899999999996433 233222 2378999999999999999999999988887764
No 279
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.27 E-value=1e-06 Score=92.38 Aligned_cols=84 Identities=13% Similarity=0.066 Sum_probs=55.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+++|+.|+|||||+++|....... .+. . ..+...|+......+.+ .+..+.++|||||.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--~~~----------~--~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--KGL----------P--PSKITPTVGLNIGTIEV-----GNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--cCC----------c--ccccCCccccceEEEEE-----CCEEEEEEECCCCh
Confidence 68999999999999999998653210 000 0 00112333333334555 57899999999997
Q ss_pred cccc--cccccccceEEEEecCCCc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.. ......+|++++|+|+...
T Consensus 62 ~~~~~~~~~~~~~~~~v~vvd~~~~ 86 (167)
T cd04160 62 SLRSLWDKYYAECHAIIYVIDSTDR 86 (167)
T ss_pred hhHHHHHHHhCCCCEEEEEEECchH
Confidence 5442 2345578999999998754
No 280
>KOG1423|consensus
Probab=98.26 E-value=1.4e-06 Score=95.84 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=63.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
.+..+||++|.||+|||||+|.+++..-..++... .+|+..+...+.- +.+.+.|.||
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~-----------------~TTr~~ilgi~ts-----~eTQlvf~DT 127 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKV-----------------HTTRHRILGIITS-----GETQLVFYDT 127 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccc-----------------cceeeeeeEEEec-----CceEEEEecC
Confidence 45779999999999999999999987655554443 5666665555544 7899999999
Q ss_pred CCcccc--------------cccccccccceEEEEecCCC
Q psy15088 478 PASPVT--------------LLLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 478 pGh~~~--------------~~l~~~~~ad~~v~vida~~ 503 (1291)
||.... ..-.+++.||++++++|+..
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred CcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC
Confidence 997311 12346678999999999984
No 281
>PRK04213 GTP-binding protein; Provisional
Probab=98.25 E-value=2.4e-06 Score=92.83 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=66.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|++|+|||||+++|.+.. ... ....|+|++.. .+.+ . .++++|||
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~-----------------~~~~~~t~~~~--~~~~-----~--~~~l~Dt~ 60 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRV-----------------GKRPGVTRKPN--HYDW-----G--DFILTDLP 60 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Ccc-----------------CCCCceeeCce--EEee-----c--ceEEEeCC
Confidence 34589999999999999999997543 111 12337777643 2333 2 58999999
Q ss_pred Ccccc-----------cc-----c-ccccccceEEEEecCCCcc-----------chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVT-----------LL-----L-PDVKGKNYLMNIFDTPGMW-----------DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~-----------~~-----l-~~~~~ad~~v~vida~~g~-----------~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|+... +. + ..++.++++++|+|+.... ..++..+...+...++|.++ ++|
T Consensus 61 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ii--v~N 138 (201)
T PRK04213 61 GFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIV--AVN 138 (201)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEE--EEE
Confidence 96321 11 1 2455678889999885421 22445566666667788865 666
No 282
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.25 E-value=5.4e-06 Score=88.50 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=52.4
Q ss_pred eeEEecCCCccc----------cHHHHHHHh---hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVN----------FSDEVTAAM---RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~----------~~~~~~~a~---~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
.+.++||||+.. |...+...+ ..+|++++|+|+..++..++..+++++...++|+++|+||+|..
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 578999999632 222222233 35689999999999999999999999999999999999999985
No 283
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.23 E-value=5.1e-06 Score=92.14 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=57.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEE-EEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITL-CVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~il-vvNKiD~~ 280 (1291)
+.+++++||||+. ..+..+++.+|+++||+|+..|+..++..++..++..++|.++ |+||+|..
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 5689999999965 6778889999999999999999999999999999999999654 99999986
No 284
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.23 E-value=3e-06 Score=91.55 Aligned_cols=103 Identities=12% Similarity=0.054 Sum_probs=65.9
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhc-CCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQT-HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~-~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
+..++|+++|++++|||||+++|++.. ...+.. ..|.|+..... . .+..+.|+|
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~t~~~~~~--~------~~~~l~l~D 76 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSK-----------------TPGRTQLINFF--E------VNDKLRLVD 76 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-----------------CCCceeEEEEE--e------cCCeEEEeC
Confidence 456799999999999999999998753 111111 12555443221 1 136799999
Q ss_pred CCCcccc---------------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 477 TPASPVT---------------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 477 TpGh~~~---------------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
|||+... ..+...+.++++++++|+..++...+..+.......++|.++
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~ii 140 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLI 140 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 9997311 123334455678888898877766665566665556666554
No 285
>PLN02842 nucleotide kinase
Probab=98.23 E-value=7.1e-07 Score=107.57 Aligned_cols=88 Identities=24% Similarity=0.551 Sum_probs=70.2
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc----------------------CCCCCCCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA----------------------EGSGRADD 673 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~----------------------~~~~r~dd 673 (1291)
.+|++|||||+..|++.+... ....+.+++|+++++.+++|+.+|.. .+.+|.||
T Consensus 77 ~G~ILDGfPRt~~Qa~~Le~~---~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD 153 (505)
T PLN02842 77 KGWLLDGYPRSFAQAQSLEKL---KIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDD 153 (505)
T ss_pred CcEEEeCCCCcHHHHHHHHhc---CCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCC
Confidence 379999999998887665432 12456789999999999999988742 23579999
Q ss_pred CHHHHHHHHhhccccccceEEeecchhhhhhhchh
Q psy15088 674 NEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAE 708 (1291)
Q Consensus 674 ~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~ 708 (1291)
+++.+++||..|...+.|++.+|.. .+..++|.
T Consensus 154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAs 186 (505)
T PLN02842 154 TEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGN 186 (505)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECC
Confidence 9999999999999999999998854 35556663
No 286
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.16 E-value=1.1e-05 Score=83.32 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=62.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC-CcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK-MAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~-~~~ilvvNKiD~~~ 281 (1291)
++.+.|+|||||..|..-.....+.++++|++||+..+..-..+++++++...+ +|+++++||.|+..
T Consensus 67 ~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~ 135 (187)
T COG2229 67 DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFD 135 (187)
T ss_pred cceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCC
Confidence 468899999999999998999999999999999999998888889999998888 89999999999985
No 287
>KOG0463|consensus
Probab=98.14 E-value=2.5e-05 Score=87.51 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=75.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccc-cccccccccccCceeeec-------------------cceec
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLR-YTDTLFTEQERGVSIKAS-------------------PVTLL 461 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~-~~D~~~~E~erGiTi~~~-------------------~~~~~ 461 (1291)
+||++|.+|+|||||.+-|....-.. +. +.++ -+=.++.|.|-|.|-... ..++.
T Consensus 135 RVAVVGNVDAGKSTLLGVLTHgeLDn---GR--G~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLTHGELDN---GR--GAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred EEEEEecccCCcceeEeeeeeccccc---Cc--cHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 89999999999999998875432110 00 0011 122345566656553221 11222
Q ss_pred ccc-cCCCCeEEEEEeCCCcccccc-----cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 462 LPD-VKGKNYLMNIFDTPASPVTLL-----LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 462 ~~~-~~~~~~~~~liDTpGh~~~~~-----l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
|-. -+...+.++|||-+||.-+.+ +.+- .-|.++++|-+..|+-.-|++++..+....+|..+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH-~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfv 278 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGH-MPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFV 278 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccC-CCCceEEEecccccceeccHHhhhhhhhhcCcEEE
Confidence 311 123567899999999964331 1111 23789999999999988999999999888888754
No 288
>PRK11058 GTPase HflX; Provisional
Probab=98.13 E-value=3.3e-06 Score=101.90 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
+..|+|+|.+|+|||||+|+|.+.... +.... |+|++.....+.++ ....+.++||||
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~-----------------~tTld~~~~~i~l~----~~~~~~l~DTaG 254 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQL-----------------FATLDPTLRRIDVA----DVGETVLADTVG 254 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccCC-----------------CCCcCCceEEEEeC----CCCeEEEEecCc
Confidence 347999999999999999999865432 22222 66777665556552 334789999999
Q ss_pred c-c---------cccccccccccceEEEEecCCCcc
Q psy15088 480 S-P---------VTLLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h-~---------~~~~l~~~~~ad~~v~vida~~g~ 505 (1291)
. . +..++..+..||++++|+|+...-
T Consensus 255 ~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~ 290 (426)
T PRK11058 255 FIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVR 290 (426)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCcc
Confidence 7 2 223555567899999999998763
No 289
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.12 E-value=5e-06 Score=85.20 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=68.1
Q ss_pred EEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccccc
Q psy15088 405 LVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTL 484 (1291)
Q Consensus 405 iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~ 484 (1291)
|+|++++|||||+++|.+....... ..+++|.......+.+. ....+.++||||+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-----------------PVPGTTTDPVEYVWELG----PLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-----------------CCCCcEECCeEEEEEec----CCCcEEEEECCCCCccc
Confidence 5799999999999999876433211 12255555443333331 27789999999986432
Q ss_pred ---------ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 485 ---------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 485 ---------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.......+|.+++++|+..........+.......+.|.++ ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~iv--v~n 112 (163)
T cd00880 60 GLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLL--VLN 112 (163)
T ss_pred cchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEE--EEE
Confidence 22345678999999999988766555545555556667654 555
No 290
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.12 E-value=5.6e-06 Score=86.85 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=51.0
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch-hHHHHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML-NTERLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~-~~~~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.+|.......++.+|+++||+|+.+.-.. .....+..+. ..++|+++++||+|+..
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 45889999999999988888899999999999999764211 1122222222 24799999999999864
No 291
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.09 E-value=5e-06 Score=99.13 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=59.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|||+|.+|+|||||+|+|.... .+++..+ ++|+......+.+. ++..|.|+||||+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p-----------------~TT~~p~~Giv~~~----~~~~i~~vDtPGi~ 218 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYP-----------------FTTLVPNLGVVRVD----DERSFVVADIPGLI 218 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCC-----------------CCccCcEEEEEEeC----CCcEEEEEeCCCcc
Confidence 69999999999999999998654 3444444 77877766666552 34579999999973
Q ss_pred c---------ccccccccccceEEEEecCC
Q psy15088 482 V---------TLLLPDVKGKNYLMNIFDTP 502 (1291)
Q Consensus 482 ~---------~~~l~~~~~ad~~v~vida~ 502 (1291)
. ...++.+..+|+++.|+|+.
T Consensus 219 ~~a~~~~~Lg~~~l~~i~radvlL~VVD~s 248 (390)
T PRK12298 219 EGASEGAGLGIRFLKHLERCRVLLHLIDIA 248 (390)
T ss_pred ccccchhhHHHHHHHHHHhCCEEEEEeccC
Confidence 1 12455677889999999976
No 292
>PRK00089 era GTPase Era; Reviewed
Probab=98.09 E-value=1.3e-05 Score=92.61 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=57.9
Q ss_pred CceeEEecCCCcccc--------HHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNF--------SDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~--------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..+.++||||+.+. ...+..++..+|++++|+|+..+.+..+..+++.++..++|+++|+||+|..
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 357899999998653 3446678899999999999999888889999999988889999999999986
No 293
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.08 E-value=5.1e-06 Score=90.55 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=53.8
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
+.+|+|+|++|+|||||+++|+..... .... -+.|++.....+.+. +.+.+.++||||
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~-----------------~~~t~~~~~~~~~~~----~~~~~~i~Dt~G 98 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQ-----------------LFATLDPTTRRLRLP----DGREVLLTDTVG 98 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCc-----------------cceeccceeEEEEec----CCceEEEeCCCc
Confidence 459999999999999999999876311 1000 033433333333332 234899999999
Q ss_pred cccc---------c-ccccccccceEEEEecCCCcc
Q psy15088 480 SPVT---------L-LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~---------~-~l~~~~~ad~~v~vida~~g~ 505 (1291)
+... . .+.....+|++++|+|+...-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 134 (204)
T cd01878 99 FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPD 134 (204)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCC
Confidence 8321 1 222234679999999998663
No 294
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.05 E-value=9.9e-06 Score=83.78 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=75.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+|+|..++||||++.++..+...++....... +.+. .|-+|+-....++.+. +++.+.|.|||||.
T Consensus 12 KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~------s~k~--kr~tTva~D~g~~~~~----~~~~v~LfgtPGq~ 79 (187)
T COG2229 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSV------SGKG--KRPTTVAMDFGSIELD----EDTGVHLFGTPGQE 79 (187)
T ss_pred eEEEEcccccchhhHHHHhhccccceeecccccc------cccc--ccceeEeecccceEEc----CcceEEEecCCCcH
Confidence 8999999999999999999888654432211110 0110 4456655544444442 45899999999997
Q ss_pred ccc-ccc-cccccceEEEEecCCCccchhhHhhHHHHHhhc-Cccchhhhhh
Q psy15088 482 VTL-LLP-DVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHAS-AQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~-~l~-~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~-~~~~fv~fil 530 (1291)
-|. ++. ....++++|+++|...+.+-..+++........ +|. |.++|
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~--vVa~N 129 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPV--VVAIN 129 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCE--EEEee
Confidence 433 222 223578999999999886656666766665555 444 44887
No 295
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=98.05 E-value=1e-05 Score=80.59 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=39.4
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
.+.+|.++|.+|++.|+..|||++.|+.+++|.|.++.+|..
T Consensus 57 ~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~ 98 (120)
T cd01693 57 LLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPG 98 (120)
T ss_pred ChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCC
Confidence 457899999999999999999999999999999999999855
No 296
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.5e-05 Score=95.67 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=71.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.||++|.||+|||||.|+|.+..- .+.+=+ |.|++-....+.+ +++.|.++|.||.-
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q-~VgNwp-----------------GvTVEkkeg~~~~-----~~~~i~ivDLPG~Y 61 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQ-KVGNWP-----------------GVTVEKKEGKLKY-----KGHEIEIVDLPGTY 61 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCc-eecCCC-----------------CeeEEEEEEEEEe-----cCceEEEEeCCCcC
Confidence 599999999999999999987643 333334 9999988888888 88999999999971
Q ss_pred -------c---ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 482 -------V---TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 482 -------~---~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
+ .+..-.-+..|++|.|+||..= ..+..+.-+..+.|+|.++
T Consensus 62 SL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~il 113 (653)
T COG0370 62 SLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMIL 113 (653)
T ss_pred CCCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEE
Confidence 1 1111112356899999998742 2334455566778888653
No 297
>PRK15494 era GTPase Era; Provisional
Probab=98.03 E-value=1.1e-05 Score=94.89 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=56.6
Q ss_pred CceeEEecCCCcccc--------HHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNF--------SDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~--------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+.+++++||||+.+. ......+++.||++|||||+..+....++.++..++..++|+|+|+||+|+.
T Consensus 99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 567899999998532 2334567899999999999999998888888888888899999999999985
No 298
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.03 E-value=9e-06 Score=85.46 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=55.5
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCce--eeeccceecccccCCCCeEEEE
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVS--IKASPVTLLLPDVKGKNYLMNI 474 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiT--i~~~~~~~~~~~~~~~~~~~~l 474 (1291)
....++|+++|+.++|||||+++|+... .... .+.| ++.....+.+ .+....+.+
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~---~~~~-----------------~~~t~~~~~~~~~~~~---~~~~~~~~~ 60 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGL---FPPG-----------------QGATIGVDFMIKTVEI---KGEKIKLQI 60 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCC---CCCC-----------------CCCceeeEEEEEEEEE---CCEEEEEEE
Confidence 3456799999999999999999997432 1110 1222 2232223333 223466888
Q ss_pred EeCCCcccccc--cccccccceEEEEecCCCc
Q psy15088 475 FDTPASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 475 iDTpGh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.||||+..+.. ......+|++++++|+..+
T Consensus 61 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (169)
T cd04114 61 WDTAGQERFRSITQSYYRSANALILTYDITCE 92 (169)
T ss_pred EECCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence 99999965442 2345578999999998765
No 299
>KOG2485|consensus
Probab=98.03 E-value=1.7e-05 Score=88.40 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=49.5
Q ss_pred cCCCccc-cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 221 LPPGHVN-FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 221 DtpG~~~-~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+=|||-. -.+.+..-+...|.+|=|=||+-.++...+.+-+++. .+|.|+|.||||+..
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad 87 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLAD 87 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccC
Confidence 4588843 3456777888999999999999999998888888876 889999999999975
No 300
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=84.82 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcC-CcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTH-PGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~-~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.-||++|+.|+|||||+|+|.+... +-++..+ |.|+.... |.+ .+ .+.|+|-||
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP-----------------GrTq~iNf--f~~-----~~-~~~lVDlPG 79 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTP-----------------GRTQLINF--FEV-----DD-ELRLVDLPG 79 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCC-----------------CccceeEE--EEe-----cC-cEEEEeCCC
Confidence 4799999999999999999998543 3344444 88887653 333 22 288999999
Q ss_pred ccc-----------------ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 480 SPV-----------------TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 480 h~~-----------------~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
..+ +..-+. .-..+++++|+..+....++++...+...++|.++
T Consensus 80 YGyAkv~k~~~e~w~~~i~~YL~~R~--~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~v 140 (200)
T COG0218 80 YGYAKVPKEVKEKWKKLIEEYLEKRA--NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIV 140 (200)
T ss_pred cccccCCHHHHHHHHHHHHHHHhhch--hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE
Confidence 832 111111 12467888999999999999999999999999875
No 301
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.98 E-value=1.2e-05 Score=83.24 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=50.1
Q ss_pred CceeEEecCCCccccHHH------HHHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDE------VTAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~------~~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..++++||||+.++... ....+ ..+|++|+|+|+... .+....+.++.+.++|+++|+||+|...
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 457899999999876531 23333 489999999999873 3344556677778999999999999864
No 302
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.98 E-value=1.4e-05 Score=83.15 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=54.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++|++..-.. +...+++++.....+.+. +....++++||||+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN------------------QYQATIGIDFLSKTMYLE---DKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc------------------cCCCceeeeEEEEEEEEC---CEEEEEEEEECCCcH
Confidence 79999999999999999998664321 111244444433334341 234679999999986
Q ss_pred cccc--cccccccceEEEEecCCCc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.. ...+..+|++++|+|+...
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~ 85 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNR 85 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCH
Confidence 4432 2234567899999998765
No 303
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.98 E-value=1.5e-05 Score=86.98 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=51.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|.++|+.++|||||+.+|........ + .|+......+... ...++..+.++|||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t----------~-----------~s~~~~~~~~~~~-~~~~~~~~~l~D~pG~ 58 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST----------V-----------TSIEPNVATFILN-SEGKGKKFRLVDVPGH 58 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc----------c-----------CcEeecceEEEee-cCCCCceEEEEECCCC
Confidence 3799999999999999999986531110 0 1111111111110 0125678999999999
Q ss_pred ccccc--ccccccc-ceEEEEecCCCc
Q psy15088 481 PVTLL--LPDVKGK-NYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~--l~~~~~a-d~~v~vida~~g 504 (1291)
..++. ......+ +++|+|+|+...
T Consensus 59 ~~~~~~~~~~~~~~~~~vV~VvD~~~~ 85 (203)
T cd04105 59 PKLRDKLLETLKNSAKGIVFVVDSATF 85 (203)
T ss_pred HHHHHHHHHHHhccCCEEEEEEECccc
Confidence 75442 2223444 899999999875
No 304
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.97 E-value=1.5e-05 Score=83.61 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=53.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.++|+++|+.++|||||+++|+...-. .. .....|+ +.....+.+ .+....+++.||||
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~---~~-------------~~~t~~~--~~~~~~~~~---~~~~~~l~i~D~~G 61 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS---ER-------------QGNTIGV--DFTMKTLEI---EGKRVKLQIWDTAG 61 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc---cc-------------CCCccce--EEEEEEEEE---CCEEEEEEEEECCC
Confidence 469999999999999999998743210 00 0011122 222223333 12346789999999
Q ss_pred cccccc--cccccccceEEEEecCCCcc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
+..+.. ......+|++++++|+...-
T Consensus 62 ~~~~~~~~~~~~~~~d~~llv~d~~~~~ 89 (165)
T cd01864 62 QERFRTITQSYYRSANGAIIAYDITRRS 89 (165)
T ss_pred hHHHHHHHHHHhccCCEEEEEEECcCHH
Confidence 965442 22344679999999998753
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.97 E-value=1.6e-05 Score=92.24 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=99.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCc-cccccccccccccccccCceeeeccceec------ccccCCCCeEEE
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-EEKNLRYTDTLFTEQERGVSIKASPVTLL------LPDVKGKNYLMN 473 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-~~~~~~~~D~~~~E~erGiTi~~~~~~~~------~~~~~~~~~~~~ 473 (1291)
.-||++|++++|||||++++....- ....+ .....|..|-++.... |-||-++.--|. ..-.++-...+.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~V--lP~i~~~~~k~Ra~DELpqs~~-GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLV--LPNISNEYDKERAQDELPQSAA-GKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhc--cccccchhHHhHHHhccCcCCC-CCCcccCCCccccCcceEEeccCCCcccEE
Confidence 3799999999999999999997731 11111 2234455565655555 844444333331 111233457899
Q ss_pred EEeCCCcccc---------c----------------------cccccc-ccceEEEEe-cCC------CccchhhHhhHH
Q psy15088 474 IFDTPASPVT---------L----------------------LLPDVK-GKNYLMNIF-DTP------GMWDIHVRKFSK 514 (1291)
Q Consensus 474 liDTpGh~~~---------~----------------------~l~~~~-~ad~~v~vi-da~------~g~~~qt~~~~~ 514 (1291)
||||+|..+. . +..++. .++++|+|. |+. ++|..-..++..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999998321 1 344555 889999998 875 556666777778
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCC---cChhhhh-cCchHHHHHHHh
Q psy15088 515 KAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIH---MNKEESK-INIRPLLRLVYK 577 (1291)
Q Consensus 515 ~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~---l~~~~~~-~~~~~~l~~i~~ 577 (1291)
...+.++|-++ .+| + .|.....-.+...++..++++. ++..+++ .+...+|+.++-
T Consensus 175 eLk~~~kPfii--vlN----~-~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 175 ELKELNKPFII--LLN----S-THPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHhcCCCEEE--EEE----C-cCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 88888888765 555 2 1100011111123555666653 3444444 467777776654
No 306
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.96 E-value=1.4e-05 Score=84.35 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=53.0
Q ss_pred EEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCC-CeEEEEEeCCCccc-
Q psy15088 405 LVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK-NYLMNIFDTPASPV- 482 (1291)
Q Consensus 405 iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~-~~~~~liDTpGh~~- 482 (1291)
|+|++|+|||||+++|.+... .+... .++|++.....+.+ + ++.+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~-----------------~~~t~~~~~~~~~~-----~~~~~~~i~DtpG~~~~ 57 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANY-----------------PFTTLEPNLGVVEV-----PDGARIQVADIPGLIEG 57 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCC-----------------CceeecCcceEEEc-----CCCCeEEEEeccccchh
Confidence 579999999999999987642 11111 25666554444445 4 78899999999831
Q ss_pred ---cc-----ccccccccceEEEEecCCCc
Q psy15088 483 ---TL-----LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 483 ---~~-----~l~~~~~ad~~v~vida~~g 504 (1291)
.. .+..+..+|++++|+|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 87 (176)
T cd01881 58 ASEGRGLGNQFLAHIRRADAILHVVDASED 87 (176)
T ss_pred hhcCCCccHHHHHHHhccCEEEEEEeccCC
Confidence 11 12345578999999999865
No 307
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.94 E-value=3.9e-05 Score=83.74 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=50.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhc-CcEEEEEECCCCCchhHHHHHHHH-------H--HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLC-DGVVLFVDAAEGVMLNTERLLKHA-------V--QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~-D~~l~vVD~~~g~~~~~~~~~~~l-------~--~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.|+|||||..+.......++.+ +++|||||+..... .-..++.++ . +.++|+++|.||+|...
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 45788999999999988888889998 99999999988631 111222221 1 24899999999999864
No 308
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.93 E-value=2.8e-05 Score=97.82 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred cccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccccccc
Q psy15088 407 GHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLL 486 (1291)
Q Consensus 407 G~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~~l 486 (1291)
|.+|+|||||.|+|.+... .+.. ..|+|++.....+.+ +++.++++||||+..+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n-----------------~pG~Tv~~~~~~i~~-----~~~~i~lvDtPG~~~~~~~ 57 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGN-----------------WPGVTVEKKEGKLGF-----QGEDIEIVDLPGIYSLTTF 57 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecC-----------------CCCeEEEEEEEEEEE-----CCeEEEEEECCCccccCcc
Confidence 7899999999999986531 2222 238998887777777 6788999999998543221
Q ss_pred ----------ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhC-CccCcHHHHHHHh
Q psy15088 487 ----------PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVG-DVDSSLPAVLDQL 555 (1291)
Q Consensus 487 ----------~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~-~~~~~l~~i~~~l 555 (1291)
-....+|+++.|+|+... .+......+..+.++|.++ ++| | +|.... .......++.+++
T Consensus 58 s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiII--VlN----K-~Dl~~~~~i~~d~~~L~~~l 128 (591)
T TIGR00437 58 SLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMIL--ALN----L-VDEAEKKGIRIDEEKLEERL 128 (591)
T ss_pred chHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEE--EEe----h-hHHHHhCCChhhHHHHHHHc
Confidence 122367999999998762 2233444455567778765 555 4 554322 1222345556666
Q ss_pred CCC
Q psy15088 556 GIH 558 (1291)
Q Consensus 556 g~~ 558 (1291)
|+.
T Consensus 129 g~p 131 (591)
T TIGR00437 129 GVP 131 (591)
T ss_pred CCC
Confidence 654
No 309
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.93 E-value=1.5e-05 Score=85.69 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=57.5
Q ss_pred hhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCe
Q psy15088 391 ADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNY 470 (1291)
Q Consensus 391 ~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~ 470 (1291)
++.|....+-.+|+|+|+.|+|||||+++|....-... ..|+......+.+ .+.
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~---------------------~~T~~~~~~~i~~-----~~~ 63 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQH---------------------VPTLHPTSEELTI-----GNI 63 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCccc---------------------CCccCcceEEEEE-----CCE
Confidence 33444445567899999999999999999975421100 0111112223444 568
Q ss_pred EEEEEeCCCcccccc--cccccccceEEEEecCCCc
Q psy15088 471 LMNIFDTPASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 471 ~~~liDTpGh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.++||||+..+.. ......+|.+++|+|+...
T Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~ 99 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADP 99 (190)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcH
Confidence 899999999965432 2334567899999998754
No 310
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.92 E-value=1.7e-05 Score=82.74 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=52.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++|+...-.... . ..-|+...+..+.+ .+....+++.|||||.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-~---------------~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-Q---------------HTIGVEFGSKIIRV-----GGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-C---------------CceeeeEEEEEEEE-----CCEEEEEEEEECcchH
Confidence 7999999999999999999855321100 0 00011111111111 1245788999999996
Q ss_pred cccc--cccccccceEEEEecCCCcc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
.+.. ......+|++++++|+...-
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~ 86 (161)
T cd04113 61 RFRSVTRSYYRGAAGALLVYDITNRT 86 (161)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHH
Confidence 5432 22234678999999998763
No 311
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.92 E-value=2.8e-05 Score=81.39 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=53.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++++...-.. .. ....+.++....+.+ .++...+++.||||+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~-----~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP---QQ-------------LSTYALTLYKHNAKF-----EGKTILVDFWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---Cc-------------CCceeeEEEEEEEEE-----CCEEEEEEEEeCCCch
Confidence 79999999999999999998543110 00 000122221111111 2356789999999997
Q ss_pred cccccc--cccccceEEEEecCCCccc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGMWD 506 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g~~ 506 (1291)
.+..+. ....+|++++|+|+....+
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s 87 (161)
T cd04124 61 RFQTMHASYYHKAHACILVFDVTRKIT 87 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHH
Confidence 654332 3557899999999887643
No 312
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.92 E-value=1.5e-05 Score=82.71 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=52.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||++++.+..-... ...-|++. .++.+ .+..+.+.||||+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~-----------------~~t~~~~~----~~~~~-----~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT-----------------IPTIGFNV----ETVEY-----KNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------CCCcCcce----EEEEE-----CCEEEEEEECCCCh
Confidence 589999999999999999986641100 00002222 22333 57889999999996
Q ss_pred ccc--ccccccccceEEEEecCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
.+. ....+..+|++++|+|+...
T Consensus 55 ~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 55 KIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred hhHHHHHHHhccCCEEEEEEECCCH
Confidence 543 12234567899999999875
No 313
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.92 E-value=9.1e-06 Score=85.01 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=49.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+++|++|+|||||+++|.+.... +.+. ....|. .. +++||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~-------------------------~~~~--~~v~~~---~~----~~iDtpG~ 47 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL-------------------------ARKT--QAVEFN---DK----GDIDTPGE 47 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc-------------------------Cccc--eEEEEC---CC----CcccCCcc
Confidence 48999999999999999998754210 0011 111221 01 37999996
Q ss_pred c-----ccc-ccccccccceEEEEecCCCccchhhH
Q psy15088 481 P-----VTL-LLPDVKGKNYLMNIFDTPGMWDIHVR 510 (1291)
Q Consensus 481 ~-----~~~-~l~~~~~ad~~v~vida~~g~~~qt~ 510 (1291)
. ..+ .+.++..||++++|+|+..+.+..+.
T Consensus 48 ~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~ 83 (158)
T PRK15467 48 YFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPA 83 (158)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCH
Confidence 2 111 34456788999999999877544343
No 314
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.90 E-value=2.6e-05 Score=76.90 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=52.5
Q ss_pred CceeEEecCCCccc---------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEc
Q psy15088 214 TRNNNKCLPPGHVN---------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNK 276 (1291)
Q Consensus 214 ~~~~~liDtpG~~~---------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNK 276 (1291)
+..|.++||||..+ ...+....+..+|++++|||+......++..++++++ .++|+++|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 56788999999864 2335677789999999999998866777889999997 89999999998
No 315
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.90 E-value=3.8e-05 Score=80.55 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=51.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.++++||||+..|.......++.+|++++|+|+......+.. ..+..+.. .++|+++|+||+|+..
T Consensus 53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 678999999999988888889999999999999876543332 22233332 4688999999999864
No 316
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.90 E-value=3e-05 Score=83.17 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=56.0
Q ss_pred hcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEE
Q psy15088 393 MMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLM 472 (1291)
Q Consensus 393 ~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~ 472 (1291)
++..+.+-.+|+++|..++|||||+++|....-..+ . ..++.++ ..+.+ ++..+
T Consensus 10 ~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~--~---------------~t~~~~~----~~~~~-----~~~~~ 63 (184)
T smart00178 10 SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQH--Q---------------PTQHPTS----EELAI-----GNIKF 63 (184)
T ss_pred HhccccccCEEEEECCCCCCHHHHHHHHhcCCCccc--C---------------Cccccce----EEEEE-----CCEEE
Confidence 343445567999999999999999999985421110 0 0112222 22233 57889
Q ss_pred EEEeCCCcccccc--cccccccceEEEEecCCCc
Q psy15088 473 NIFDTPASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 473 ~liDTpGh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.++||||+..++. -.....+|++++|+|+...
T Consensus 64 ~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~ 97 (184)
T smart00178 64 TTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDK 97 (184)
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcH
Confidence 9999999864331 1233567999999998764
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.89 E-value=2.6e-05 Score=86.57 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=57.0
Q ss_pred ceeEEecCCCcccc-------------HHHHHHHhh-hcCcEEEEEECCCCCchhH-HHHHHHHHHcCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVNF-------------SDEVTAAMR-LCDGVVLFVDAAEGVMLNT-ERLLKHAVQEKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~~-------------~~~~~~a~~-~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~~~~~ilvvNKiD~ 279 (1291)
..|+||||||+... ..++..+++ ..+.+|+||||+.++.+++ .++++++++.++|+++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 37999999999632 134677888 5679999999999999988 69999999999999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 205 ~~ 206 (240)
T smart00053 205 MD 206 (240)
T ss_pred CC
Confidence 74
No 318
>KOG3078|consensus
Probab=97.89 E-value=2.3e-06 Score=92.85 Aligned_cols=91 Identities=30% Similarity=0.552 Sum_probs=77.1
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
.+|++|||||+..|++.+.. ....++.+++|++|++.+.+|+..|.. .+.+
T Consensus 94 ~~~ildg~Prt~~qa~~l~~---~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~q 170 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLD---RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQ 170 (235)
T ss_pred cccccCCCCcchHHHHHHHH---ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhc
Confidence 48999999999988776222 123577899999999999999888731 2468
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
|.||+++.++.||..|..++.||+.||+.++.+..+.|.+
T Consensus 171 r~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~ 210 (235)
T KOG3078|consen 171 REDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK 210 (235)
T ss_pred CccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc
Confidence 9999999999999999999999999999999888888765
No 319
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.88 E-value=2.4e-05 Score=82.86 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=52.9
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|.+..-... +...|..+. .+.+ +++.+.++||||
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----------------~~t~g~~~~----~~~~-----~~~~l~l~D~~G 67 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTI-----------------SPTLGFQIK----TLEY-----EGYKLNIWDVGG 67 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----------------CCccccceE----EEEE-----CCEEEEEEECCC
Confidence 45899999999999999999986521100 011132221 2223 468899999999
Q ss_pred cccccc--cccccccceEEEEecCCCc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
+..++. ......+|++++|+|+...
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (173)
T cd04154 68 QKTLRPYWRNYFESTDALIWVVDSSDR 94 (173)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEECCCH
Confidence 964432 2234567999999998876
No 320
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.88 E-value=4.9e-05 Score=86.66 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=57.8
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
....+|+++|+.|+||||++|+|+++....++... +.|......+..+ .++.+++|||
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-----------------s~t~~~~~~~~~~-----~G~~l~VIDT 93 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-----------------SEGLRPMMVSRTR-----AGFTLNIIDT 93 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-----------------CcceeEEEEEEEE-----CCeEEEEEEC
Confidence 34569999999999999999999987543332111 1122222222223 6889999999
Q ss_pred CCccccc-----cccc------ccccceEEEEecCCC-ccchhhHhhHHHH
Q psy15088 478 PASPVTL-----LLPD------VKGKNYLMNIFDTPG-MWDIHVRKFSKKA 516 (1291)
Q Consensus 478 pGh~~~~-----~l~~------~~~ad~~v~vida~~-g~~~qt~~~~~~~ 516 (1291)
||..+.. .+.. ....|++++|.++.. .++..++.+.+..
T Consensus 94 PGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~I 144 (313)
T TIGR00991 94 PGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAI 144 (313)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHH
Confidence 9984210 1111 114678888854432 2555555554443
No 321
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.87 E-value=2.4e-05 Score=81.44 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=50.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++|...... .. ...-|.++ ..+.+ .+..+.++||||+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~---------------~~t~~~~~----~~~~~-----~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TT---------------IPTIGFNV----ETVTY-----KNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--Cc---------------CCccCcCe----EEEEE-----CCEEEEEEECCCCH
Confidence 5899999999999999999643211 00 00012211 12223 57889999999996
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++|+|+...
T Consensus 55 ~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 55 SIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCH
Confidence 54422 234568999999998764
No 322
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.87 E-value=6.5e-06 Score=88.41 Aligned_cols=89 Identities=43% Similarity=0.808 Sum_probs=69.4
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
+|++||||++..|+..+...+. ..+.+++++++.+.+.+|+.+|+. ...|.|++++.+.+|+..|...+.|++.+|
T Consensus 84 ~~i~dg~~~~~~q~~~~~~~~~---~~~~vi~l~~~~~~~~~Rl~~R~~-~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y 159 (188)
T TIGR01360 84 GFLIDGYPREVKQGEEFERRIG---PPTLVLYFDCSEDTMVKRLLKRAE-TSGRVDDNEKTIKKRLETYYKATEPVIAYY 159 (188)
T ss_pred eEEEeCCCCCHHHHHHHHHcCC---CCCEEEEEECCHHHHHHHHHcccc-cCCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 7899999998877766554332 245688999999999999998863 245889999999999999988999998887
Q ss_pred cchhhhhhhchhH
Q psy15088 697 EAKNLVKRFNAEK 709 (1291)
Q Consensus 697 a~k~~~~~~~g~~ 709 (1291)
..++.+..+++..
T Consensus 160 ~~~~~~~~id~~~ 172 (188)
T TIGR01360 160 ETKGKLRKINAEG 172 (188)
T ss_pred HhCCCEEEEECCC
Confidence 6655555555543
No 323
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.87 E-value=3e-05 Score=81.73 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=52.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++++...-..... ..-|.+.....+. . .+....+++.||||+.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~----------------~t~~~~~~~~~~~--~---~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD----------------LTIGVEFGARMIT--I---DGKQIKLQIWDTAGQE 64 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC----------------CccceeEEEEEEE--E---CCEEEEEEEEECCCcH
Confidence 89999999999999999998553211100 0013322222222 2 1245689999999986
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++++|+...
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~ 89 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRR 89 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCH
Confidence 54432 334577999999998854
No 324
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.86 E-value=2.9e-05 Score=91.43 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=75.3
Q ss_pred ccccCCCccccccCCCceeeecCceeEEecCCCccc---cH-----HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHH
Q psy15088 192 GNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVN---FS-----DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHA 263 (1291)
Q Consensus 192 ~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~---~~-----~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l 263 (1291)
+.+..-++.|||+-...+++- |..+.|+||.|..+ .. +....++..||.+|+|+|+..++..++..++. +
T Consensus 243 AIVTdI~GTTRDviee~i~i~-G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~ 320 (454)
T COG0486 243 AIVTDIAGTTRDVIEEDINLN-GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-L 320 (454)
T ss_pred eEecCCCCCccceEEEEEEEC-CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-h
Confidence 344577899999999999975 99999999999853 33 33578999999999999999999999999888 5
Q ss_pred HHcCCcEEEEEEccCccc
Q psy15088 264 VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 264 ~~~~~~~ilvvNKiD~~~ 281 (1291)
...++|+++|+||+|+..
T Consensus 321 ~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 321 LPKKKPIIVVLNKADLVS 338 (454)
T ss_pred cccCCCEEEEEechhccc
Confidence 667899999999999875
No 325
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.85 E-value=2.6e-05 Score=87.56 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=45.3
Q ss_pred CCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEE
Q psy15088 395 DTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNI 474 (1291)
Q Consensus 395 ~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~l 474 (1291)
+......||+++|+.|+|||||+|+|++.....+.... +.|.+.......+ ++..+++
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~-----------------~~T~~~~~~~~~~-----~g~~i~v 83 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQ-----------------SETLRVREVSGTV-----DGFKLNI 83 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-----------------CceEEEEEEEEEE-----CCeEEEE
Confidence 33445569999999999999999999987543322111 3344433333344 6789999
Q ss_pred EeCCCcc
Q psy15088 475 FDTPASP 481 (1291)
Q Consensus 475 iDTpGh~ 481 (1291)
|||||..
T Consensus 84 IDTPGl~ 90 (249)
T cd01853 84 IDTPGLL 90 (249)
T ss_pred EECCCcC
Confidence 9999975
No 326
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.85 E-value=3.7e-05 Score=90.05 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=58.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-.|+|+|.+|+|||||+++|.... ..+...+ ++|+......+.+. ++..|.++||||.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~yp-----------------fTT~~p~~G~v~~~----~~~~~~i~D~PGl 216 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYP-----------------FTTLHPNLGVVRVD----DYKSFVIADIPGL 216 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCC-----------------CceeCceEEEEEeC----CCcEEEEEeCCCc
Confidence 389999999999999999998642 2222222 66776665555552 4578999999997
Q ss_pred cc---------ccccccccccceEEEEecCCCc
Q psy15088 481 PV---------TLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~---------~~~l~~~~~ad~~v~vida~~g 504 (1291)
.. ...++-+..++++++|+|+...
T Consensus 217 i~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~ 249 (335)
T PRK12299 217 IEGASEGAGLGHRFLKHIERTRLLLHLVDIEAV 249 (335)
T ss_pred cCCCCccccHHHHHHHHhhhcCEEEEEEcCCCC
Confidence 31 1134456678999999998753
No 327
>KOG0052|consensus
Probab=97.84 E-value=9.3e-06 Score=93.31 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=91.7
Q ss_pred hhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHh
Q psy15088 157 LGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAM 236 (1291)
Q Consensus 157 ~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~ 236 (1291)
-++-..-....|++|+..|=+..|+.||++++..-+.+.+. .+.+++||.|||.||..+|+.+.
T Consensus 40 ~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~----------------k~~i~iid~pgh~d~~k~mitg~ 103 (391)
T KOG0052|consen 40 EKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS----------------KYYVTIIDAPGHRDFIKNMITGT 103 (391)
T ss_pred chHHHhhccceeeeeeeechhhhccccceEEEEEeecccce----------------eEEEEEecCCCCCceeeeEEeeE
Confidence 34445555667999999999999999999988777777766 45789999999999999999999
Q ss_pred hhcCcEEEEEECCCC-------CchhHHHHHHHHHHcCCc-EEEEEEccCccc
Q psy15088 237 RLCDGVVLFVDAAEG-------VMLNTERLLKHAVQEKMA-ITLCVNKIDRLM 281 (1291)
Q Consensus 237 ~~~D~~l~vVD~~~g-------~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~ 281 (1291)
..||.++++|.+..| ...|+++++-.+..+++. .++-+||||...
T Consensus 104 sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 104 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred eeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 999999999998433 378999999999999876 555599999864
No 328
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.84 E-value=3.4e-05 Score=80.44 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=51.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+|+|||||++++++..- ..... +++.+.....+.+ .+....++++||||+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF--VTDYD-----------------PTIEDSYTKQCEI---DGQWAILDILDTAGQE 61 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CcccC-----------------CCccceEEEEEEE---CCEEEEEEEEECCCCc
Confidence 899999999999999999986531 11100 1111110111112 1245678999999997
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++|+|+...
T Consensus 62 ~~~~~~~~~~~~~~~~ilv~d~~~~ 86 (164)
T cd04145 62 EFSAMREQYMRTGEGFLLVFSVTDR 86 (164)
T ss_pred chhHHHHHHHhhCCEEEEEEECCCH
Confidence 55422 234467899999998764
No 329
>PTZ00258 GTP-binding protein; Provisional
Probab=97.83 E-value=1.9e-05 Score=93.29 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=61.7
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC----------
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK---------- 466 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~---------- 466 (1291)
+.+-..|+|+|.||+|||||.|+|.+.. ..+..-+ ++|++.....+.+++..
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~p-----------------ftTi~p~~g~v~~~d~r~~~l~~~~~~ 79 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFP-----------------FCTIDPNTARVNVPDERFDWLCKHFKP 79 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCC-----------------CCcccceEEEEecccchhhHHHHHcCC
Confidence 3444589999999999999999996553 3443333 77777666555553211
Q ss_pred --CCCeEEEEEeCCCccc---------ccccccccccceEEEEecCCCc
Q psy15088 467 --GKNYLMNIFDTPASPV---------TLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 467 --~~~~~~~liDTpGh~~---------~~~l~~~~~ad~~v~vida~~g 504 (1291)
.-...+.++||||... ...+..+..+|+++.|+|+.++
T Consensus 80 ~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d 128 (390)
T PTZ00258 80 KSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFED 128 (390)
T ss_pred cccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 1134589999999741 1245556789999999998654
No 330
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.83 E-value=1.7e-05 Score=82.08 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=48.6
Q ss_pred CceeEEecCCCccccH----HH-H-HHH--hhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFS----DE-V-TAA--MRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~----~~-~-~~a--~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.+||+||..++. .+ + ... ....|++++|+||.. ..++..+..++.+.++|+++++||+|...
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 5689999999965432 11 1 223 368999999999987 45777888999999999999999999864
No 331
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.81 E-value=4e-05 Score=79.82 Aligned_cols=82 Identities=21% Similarity=0.309 Sum_probs=52.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++|+....... .+..-|.+.....+. + .+....+.++||||+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD----------------LAATIGVDFKVKTLT--V---DGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc----------------cCCcccceEEEEEEE--E---CCEEEEEEEEECCCch
Confidence 799999999999999999986532110 011113332222221 2 1245789999999986
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ ..+..+|++++++|+...
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (161)
T cd01863 61 RFRTLTSSYYRGAQGVILVYDVTRR 85 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCH
Confidence 44322 234567999999998754
No 332
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.81 E-value=2.9e-05 Score=94.34 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=58.7
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-.|+|+|.+|+|||||+++|.... ..+...+ ++|+......+.+ .+..|.++||||.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadyp-----------------fTTl~P~lGvv~~-----~~~~f~laDtPGl 216 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYP-----------------FTTLVPNLGVVQA-----GDTRFTVADVPGL 216 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccC-----------------cccccceEEEEEE-----CCeEEEEEECCCC
Confidence 489999999999999999998652 2222222 7777766555666 6788999999996
Q ss_pred cc---------ccccccccccceEEEEecCCC
Q psy15088 481 PV---------TLLLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~---------~~~l~~~~~ad~~v~vida~~ 503 (1291)
.. ...++.+..+|++|+|+|+..
T Consensus 217 iegas~g~gLg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 217 IPGASEGKGLGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred ccccchhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence 21 113455678899999999864
No 333
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.80 E-value=4e-05 Score=79.92 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=52.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||+++|+...-... .....|.+.....+.+. +.+..+.++||||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~v~~~-----~~~~~~~i~D~~G~~ 61 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN----------------QESTIGAAFLTQTVNLD-----DTTVKFEIWDTAGQE 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceeEEEEEEEEC-----CEEEEEEEEeCCchH
Confidence 799999999999999999986642110 01111322222222222 256789999999996
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++++|+...
T Consensus 62 ~~~~~~~~~~~~~~~~i~v~d~~~~ 86 (163)
T cd01860 62 RYRSLAPMYYRGAAAAIVVYDITSE 86 (163)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCH
Confidence 443222 23467899999998754
No 334
>KOG0466|consensus
Probab=97.80 E-value=3.4e-05 Score=84.51 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=65.9
Q ss_pred cccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCC-CCchhHHHHHHHHHHcCCc-EEEEEEcc
Q psy15088 200 IYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAE-GVMLNTERLLKHAVQEKMA-ITLCVNKI 277 (1291)
Q Consensus 200 ~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~-g~~~~~~~~~~~l~~~~~~-~ilvvNKi 277 (1291)
..++.-+..+.+-.-+++.++|||||.-....|..+....|++++++.+.+ -.+|||.+++....-.+.+ ++++-||+
T Consensus 110 ~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKi 189 (466)
T KOG0466|consen 110 PPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKI 189 (466)
T ss_pred CCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechh
Confidence 344444544333224789999999999999999999999999999999887 4689999999888888876 55669999
Q ss_pred Cccc
Q psy15088 278 DRLM 281 (1291)
Q Consensus 278 D~~~ 281 (1291)
|+..
T Consensus 190 Dli~ 193 (466)
T KOG0466|consen 190 DLIK 193 (466)
T ss_pred hhhh
Confidence 9875
No 335
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.78 E-value=4.7e-05 Score=81.62 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||++++....... ..+ ..|.+.... .+.+ ..+.+..+++.||||+.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~--~~~---------------t~~~~~~~~--~~~~--~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN--TVP---------------TKGFNTEKI--KVSL--GNSKGITFHFWDVGGQE 63 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC--cCC---------------ccccceeEE--Eeec--cCCCceEEEEEECCCcH
Confidence 79999999999999999997543210 000 012222221 1111 12256889999999996
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++|+|+...
T Consensus 64 ~~~~~~~~~~~~~d~ii~v~D~~~~ 88 (183)
T cd04152 64 KLRPLWKSYTRCTDGIVFVVDSVDV 88 (183)
T ss_pred hHHHHHHHHhccCCEEEEEEECCCH
Confidence 544221 24468999999998765
No 336
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.77 E-value=1.8e-05 Score=80.84 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=50.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++|+|||||+++|.+..... ..|+ ...| .+ .++||||..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~----------------------~~t~-----~~~~-----~~---~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY----------------------KKTQ-----AVEY-----ND---GAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc----------------------ccce-----eEEE-----cC---eeecCchhh
Confidence 79999999999999999997553100 0111 1223 12 689999982
Q ss_pred -----ccc-ccccccccceEEEEecCCCccchhhHhh
Q psy15088 482 -----VTL-LLPDVKGKNYLMNIFDTPGMWDIHVRKF 512 (1291)
Q Consensus 482 -----~~~-~l~~~~~ad~~v~vida~~g~~~qt~~~ 512 (1291)
.+. ..+....+|++++|+|+....+.++..+
T Consensus 47 ~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~ 83 (142)
T TIGR02528 47 VENRRLYSALIVTAADADVIALVQSATDPESRFPPGF 83 (142)
T ss_pred hhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhH
Confidence 222 2245678899999999987765554444
No 337
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.77 E-value=3.7e-05 Score=92.31 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=56.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
--|+++|.+|+|||||+++|....-. +..-+ ++|+......+.+. .+..|.++||||.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~yp-----------------fTTl~PnlG~v~~~----~~~~~~laD~PGl 216 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYH-----------------FTTLVPNLGVVETD----DGRSFVMADIPGL 216 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCC-----------------cceeceEEEEEEEe----CCceEEEEECCCC
Confidence 37999999999999999999865322 12222 56666554444442 2678999999997
Q ss_pred cc---------ccccccccccceEEEEecCCC
Q psy15088 481 PV---------TLLLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~---------~~~l~~~~~ad~~v~vida~~ 503 (1291)
.. ..-++.+..++++++|+|+..
T Consensus 217 iega~~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 217 IEGASEGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred cccccccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 31 113445667899999999864
No 338
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.77 E-value=3.3e-05 Score=82.28 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+++|++|+|||||+++++....... .. .++.......+.+ .+.++.+.++||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~-~~------------------~t~~~~~~~~~~~---~~~~~~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVES-YY------------------PTIENTFSKIIRY---KGQDYHLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc-cC------------------cchhhhEEEEEEE---CCEEEEEEEEECCCh
Confidence 5899999999999999999985532110 00 1111100111122 224577899999999
Q ss_pred ccccccc--cccccceEEEEecCCCcc
Q psy15088 481 PVTLLLP--DVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 481 ~~~~~l~--~~~~ad~~v~vida~~g~ 505 (1291)
..+..+. ....+|.+++++|.....
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~ 86 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRK 86 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHH
Confidence 7554332 333578899999988753
No 339
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.77 E-value=8.2e-05 Score=78.17 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=51.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++|+...-. .... .+..+.....+.+ .+....+.++||||+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~------------------~~~~~~~~~~~~~---~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYV------------------PTVFDNYSATVTV---DGKQVNLGLWDTAGQE 59 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCC------------------CceeeeeEEEEEE---CCEEEEEEEEeCCCcc
Confidence 7999999999999999999866421 0000 1111111111111 1356789999999997
Q ss_pred ccccccc--ccccceEEEEecCCCc
Q psy15088 482 VTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
.+..+.. ...+|++++++|....
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~ 84 (171)
T cd00157 60 EYDRLRPLSYPNTDVFLICFSVDSP 84 (171)
T ss_pred cccccchhhcCCCCEEEEEEECCCH
Confidence 5443322 3468999999998763
No 340
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.76 E-value=0.00012 Score=66.41 Aligned_cols=71 Identities=28% Similarity=0.206 Sum_probs=55.9
Q ss_pred EEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEcc
Q psy15088 794 MVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEG 873 (1291)
Q Consensus 794 ~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~G 873 (1291)
.++|++++.+++.+ .++++||++|+|++||.+++.+.+ .....+|.+|+... .+++++.||+++++.+
T Consensus 2 ~~~v~~~~~~~~~g-~v~~~rv~~G~l~~g~~v~~~~~~-------~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGRG-TVATGRVESGTLKKGDKVRVGPGG-------GGVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCce-EEEEEEEeeCEEecCCEEEEecCC-------ceeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 46788888777654 599999999999999999987631 23457788887664 6789999999999987
Q ss_pred CCC
Q psy15088 874 IDQ 876 (1291)
Q Consensus 874 l~~ 876 (1291)
.+.
T Consensus 70 ~~~ 72 (83)
T cd01342 70 KDK 72 (83)
T ss_pred ccc
Confidence 653
No 341
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.76 E-value=3.5e-05 Score=79.24 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=52.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++|......... ....|.+... ..+.. .+....++++||||+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~--~~~~~---~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKS--KTIEI---DGKTVKLQIWDTAGQE 60 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEE--EEEEE---CCEEEEEEEEecCChH
Confidence 7999999999999999999855422110 0011222222 22222 1256789999999996
Q ss_pred ccc--ccccccccceEEEEecCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
.+. ....+..+|++++++|+...
T Consensus 61 ~~~~~~~~~~~~~d~ii~v~d~~~~ 85 (159)
T cd00154 61 RFRSITPSYYRGAHGAILVYDITNR 85 (159)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCH
Confidence 543 23344567999999998763
No 342
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.76 E-value=4.1e-05 Score=83.18 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||+++++...-. .. .+.++.+.....+.+ .+....++|+||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~-----------------~~~t~~~~~~~~~~~---~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PK-----------------YRRTVEEMHRKEYEV---GGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cc-----------------CCCchhhheeEEEEE---CCEEEEEEEEECCCch
Confidence 4899999999999999999865311 00 001111111112223 1234688999999997
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++|+|+...
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~ 83 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDP 83 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCH
Confidence 655332 34578999999998765
No 343
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.76 E-value=4.6e-05 Score=79.61 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=50.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|.+++|||||+++++...-.... . .+..|.. ...+.. .+....+.++||||+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--~----~t~~~~~-------------~~~~~~---~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--D----PTIEDSY-------------RKQIEI---DGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc--C----CchhhhE-------------EEEEEE---CCEEEEEEEEECCCcc
Confidence 7999999999999999999865321100 0 0111110 011111 1245788899999997
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++++|+...
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~ 84 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDR 84 (164)
T ss_pred cchHHHHHHHhhCCEEEEEEECCCH
Confidence 654332 23467899999998764
No 344
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.75 E-value=4.6e-05 Score=80.20 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCccc------ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 468 KNYLMNIFDTPASPV------TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~------~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
....+.||||||... .....-+..+|++++|+++...+..++...+........++++ |||
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i--~V~ 165 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTI--FVL 165 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEE--EEE
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEE--EEE
Confidence 345689999999942 1133334678999999999998877777777776666666655 665
No 345
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.75 E-value=0.00016 Score=66.91 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=53.2
Q ss_pred CeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEE
Q psy15088 792 RLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI 871 (1291)
Q Consensus 792 pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I 871 (1291)
|+.++|..++..+ .+ .+..|||.+|++++||+|++.+. ....+|++|.. ...++++|.||+.+++
T Consensus 1 p~r~~V~~v~~~~-~g-~vv~G~v~~G~i~~Gd~v~i~P~---------~~~~~V~si~~----~~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GG-TVVSGKVESGSIQKGDTLLVMPS---------KESVEVKSIYV----DDEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CC-cEEEEEEeeeEEeCCCEEEEeCC---------CcEEEEEEEEE----CCeECCEECCCCEEEE
Confidence 5778888888766 44 58999999999999999999873 24678888763 3578999999999985
No 346
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.75 E-value=7.4e-05 Score=78.90 Aligned_cols=89 Identities=16% Similarity=0.270 Sum_probs=55.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.++|||||+++++...-. . +....++.+.....+.+ .+..+.++++||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~---~---------------~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP---E---------------RTEATIGVDFRERTVEI---DGERIKVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC---C---------------ccccceeEEEEEEEEEE---CCeEEEEEEEeCCC
Confidence 458999999999999999999753210 0 00001111111112222 22567899999999
Q ss_pred ccccc-cc--ccccccceEEEEecCCCccchhh
Q psy15088 480 SPVTL-LL--PDVKGKNYLMNIFDTPGMWDIHV 509 (1291)
Q Consensus 480 h~~~~-~l--~~~~~ad~~v~vida~~g~~~qt 509 (1291)
+..++ .+ .....+|++++|+|+...-+-+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 93 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHS 93 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHh
Confidence 87543 22 22457799999999986643333
No 347
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.75 E-value=5e-05 Score=79.05 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=51.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch--hHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML--NTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~--~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.......++.+|++|+|+|+.+.-.. ..+.+...++. .++|+++|+||+|+..
T Consensus 42 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 42 NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 45789999999998887778889999999999998874322 12333333332 3789999999999863
No 348
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.75 E-value=2.2e-05 Score=88.94 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=55.9
Q ss_pred EEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC------------CCCe
Q psy15088 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK------------GKNY 470 (1291)
Q Consensus 403 I~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~------------~~~~ 470 (1291)
|||+|.||+|||||.|+|.+... .+..-+ ++|++.....+.+++.. .-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~p-----------------ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYP-----------------FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-cccccc-----------------ccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 58999999999999999987653 322222 66666555444443210 0123
Q ss_pred EEEEEeCCCcccc---------cccccccccceEEEEecCCCc
Q psy15088 471 LMNIFDTPASPVT---------LLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 471 ~~~liDTpGh~~~---------~~l~~~~~ad~~v~vida~~g 504 (1291)
.+.++||||...- ..+..+..+|+++.|+|+.++
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~d 105 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFED 105 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcCC
Confidence 5999999997311 234446688999999998765
No 349
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.73 E-value=7.3e-05 Score=84.09 Aligned_cols=94 Identities=10% Similarity=0.111 Sum_probs=56.6
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.+.|.|+|+||+|||||+.++....-.+. +-+ =||-.....+|.+ +...|.+|||||
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA-~YP-----------------FTTK~i~vGhfe~-----~~~R~QvIDTPG 224 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVA-PYP-----------------FTTKGIHVGHFER-----GYLRIQVIDTPG 224 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccC-CCC-----------------ccccceeEeeeec-----CCceEEEecCCc
Confidence 56999999999999999999975532221 111 1121222234444 778999999999
Q ss_pred ccc-------c---ccccccc-ccceEEEEecCCC--cc--chhhHhhHHHHH
Q psy15088 480 SPV-------T---LLLPDVK-GKNYLMNIFDTPG--MW--DIHVRKFSKKAA 517 (1291)
Q Consensus 480 h~~-------~---~~l~~~~-~ad~~v~vida~~--g~--~~qt~~~~~~~~ 517 (1291)
.-+ . .++.++. -++++++++|+++ || +.|- +++..+.
T Consensus 225 lLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk 276 (346)
T COG1084 225 LLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIK 276 (346)
T ss_pred ccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHH
Confidence 821 1 1222222 3367888999875 56 3444 3344443
No 350
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.73 E-value=6.9e-05 Score=83.59 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=55.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++|.+.... +..-. ++|++.....+.+ ++..+.++||||+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~-----------------~tT~~~~~g~~~~-----~~~~i~l~DtpG~~ 58 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYE-----------------FTTLTCVPGVLEY-----KGAKIQLLDLPGII 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCC-----------------CccccceEEEEEE-----CCeEEEEEECCCcc
Confidence 6899999999999999999865311 11111 5555554445555 67899999999983
Q ss_pred cc---------cccccccccceEEEEecCCCc
Q psy15088 482 VT---------LLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~---------~~l~~~~~ad~~v~vida~~g 504 (1291)
.. ..+.....+|.+++|+|+...
T Consensus 59 ~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 59 EGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred cccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 21 123456678999999998653
No 351
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.73 E-value=6.8e-05 Score=79.62 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=53.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.++|||||+++|........ ..|+......+.+ ++..+.++||||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~---------------------~~t~~~~~~~~~~-----~~~~~~l~D~~G 68 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT---------------------SPTIGSNVEEIVY-----KNIRFLMWDIGG 68 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc---------------------CCccccceEEEEE-----CCeEEEEEECCC
Confidence 45899999999999999999975421100 1111111123334 578899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~V~D~s~~ 95 (174)
T cd04153 69 QESLRSSWNTYYTNTDAVILVIDSTDR 95 (174)
T ss_pred CHHHHHHHHHHhhcCCEEEEEEECCCH
Confidence 8644321 234577999999998765
No 352
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.73 E-value=4.4e-05 Score=79.44 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=51.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+++|.+++|||||+++|......... +. ..-|.++. .+.+ .+..++++||||+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---------~~------~t~g~~~~----~~~~-----~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---------IV------PTVGFNVE----SFEK-----GNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---------ec------CccccceE----EEEE-----CCEEEEEEECCCCH
Confidence 5899999999999999999864211100 00 01132221 1223 67899999999996
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.++.+ .....+|++++|+|+...
T Consensus 57 ~~~~~~~~~~~~~d~ii~v~D~~~~ 81 (162)
T cd04157 57 KYRGLWEHYYKNIQGIIFVIDSSDR 81 (162)
T ss_pred hhHHHHHHHHccCCEEEEEEeCCcH
Confidence 54422 223567999999998865
No 353
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.72 E-value=4.7e-05 Score=79.26 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=51.0
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh-HHHHHHHH-H-----HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-TERLLKHA-V-----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~-~~~~~~~l-~-----~~~~~~ilvvNKiD~~~ 281 (1291)
+.+++++||||+..|.......++.+|++|||+|+.++.... ....++.+ + ..++|+++|+||+|...
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 447899999999999888888899999999999998764321 11112222 1 24799999999999863
No 354
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.72 E-value=9.7e-05 Score=77.80 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=52.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++++...-.. . +. ..-|+.+. ...+.. +++...+.+.||||+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~--~--------~~------~t~~~~~~--~~~~~~---~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEK--K--------YV------ATLGVEVH--PLDFHT---NRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--C--------CC------CceeeEEE--EEEEEE---CCEEEEEEEEECCCCh
Confidence 79999999999999999998542110 0 00 00022211 111221 2356789999999997
Q ss_pred cccccc--cccccceEEEEecCCCcc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g~ 505 (1291)
.+..+. ....+|++|+|+|+...-
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~ 86 (166)
T cd00877 61 KFGGLRDGYYIGGQCAIIMFDVTSRV 86 (166)
T ss_pred hhccccHHHhcCCCEEEEEEECCCHH
Confidence 554332 234679999999998763
No 355
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.72 E-value=8e-05 Score=78.30 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=51.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||+++|+...-.. ... . ..+ ..|+. . ...+.+..++++||||+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~----~-~~~--------~~~~~-----~---~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVP----R-VLP--------EITIP-----A---DVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCC----C-ccc--------ceEee-----e---eecCCeEEEEEEeCCCch
Confidence 78999999999999999998653210 000 0 000 11111 1 112367889999999996
Q ss_pred ccc--ccccccccceEEEEecCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
.+. ....+..+|++++|+|+...
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~ 83 (166)
T cd01893 59 QDRANLAAEIRKANVICLVYSVDRP 83 (166)
T ss_pred hhhHHHhhhcccCCEEEEEEECCCH
Confidence 432 23334678999999998765
No 356
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.71 E-value=4e-05 Score=78.37 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=47.7
Q ss_pred ceeEEecCCCccccH-------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFS-------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~-------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++. .++...+..+|.+++|+|+..+...+...+.+.+.. +.|+++++||+|...
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 478899999998884 344455555666666666666665666666666544 889999999999864
No 357
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.71 E-value=9.6e-05 Score=75.62 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=57.0
Q ss_pred ceeEEecCCCccccH-------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFS-------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~-------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++. ..+...++.+|++++|+|+..+....+..+.......++|+++|+||+|...
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 478999999987754 3456688999999999999999888887767777788999999999999864
No 358
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.70 E-value=9.9e-05 Score=78.15 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=47.9
Q ss_pred CceeEEecCCCccccHHHHHHH---hhhcCcEEEEEECCCCCchhHHHHHHHHH---------HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAA---MRLCDGVVLFVDAAEGVMLNTERLLKHAV---------QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a---~~~~D~~l~vVD~~~g~~~~~~~~~~~l~---------~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.+||+|||.....+.... +..+-++|||||+.. ...+-.+++++|. +.+.|++++.||.|...
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 4578999999999887777665 889999999999874 3334444555442 35678888999999874
No 359
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.70 E-value=4.1e-05 Score=89.50 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=57.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc------------CCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV------------KGKN 469 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------------~~~~ 469 (1291)
.|+|+|.||+|||||.|+|.+.. ..+..-+ ++|++.....+.+++. +.-.
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~-~~v~nyp-----------------ftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~ 65 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG-AEAANYP-----------------FCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVP 65 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-Ceecccc-----------------cccccceEEEEEeccccchhhHHhcCCccccC
Confidence 79999999999999999998765 3333222 6666655444444321 0112
Q ss_pred eEEEEEeCCCccc---------ccccccccccceEEEEecCCCc
Q psy15088 470 YLMNIFDTPASPV---------TLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 470 ~~~~liDTpGh~~---------~~~l~~~~~ad~~v~vida~~g 504 (1291)
..+.++||||... ...+..+..+|+++.|+|+..+
T Consensus 66 a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~d 109 (364)
T PRK09601 66 ATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFED 109 (364)
T ss_pred ceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCcc
Confidence 3689999999731 1244556788999999998654
No 360
>PLN03118 Rab family protein; Provisional
Probab=97.70 E-value=5.9e-05 Score=82.79 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=51.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|+.++|||||+++|+...-....+ .-|.+.... .+.+ .+..+.+.|+||||+.
T Consensus 16 kv~ivG~~~vGKTsli~~l~~~~~~~~~~-----------------t~~~~~~~~--~~~~---~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSFISSSVEDLAP-----------------TIGVDFKIK--QLTV---GGKRLKLTIWDTAGQE 73 (211)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCC-----------------CceeEEEEE--EEEE---CCEEEEEEEEECCCch
Confidence 89999999999999999998653211100 002222111 2222 1245788999999986
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++|+|+|+...
T Consensus 74 ~~~~~~~~~~~~~d~~vlv~D~~~~ 98 (211)
T PLN03118 74 RFRTLTSSYYRNAQGIILVYDVTRR 98 (211)
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCH
Confidence 54432 234467899999998753
No 361
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.69 E-value=6.7e-05 Score=78.15 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=51.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++|+|||||+++|++..-... ..+.++.+.....+.+ .+....++++||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQ------------------YKSTIGVDFKTKTIEV---DGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCceeeEEEEEEEEE---CCEEEEEEEEECCChH
Confidence 799999999999999999985531100 0011222211222222 1234688999999996
Q ss_pred ccc--ccccccccceEEEEecCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
.+. ....+..+|++++++|+...
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~ 85 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNR 85 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCH
Confidence 433 12233467999999998764
No 362
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.69 E-value=0.00012 Score=79.52 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=50.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|.+|+|||||+++++...-.... .+ .++.+.....+.+ .+..+.++|+||||+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-~p-----------------t~~~~~~~~~i~~---~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-IP-----------------TEHRRLYRPAVVL---SGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCccc-CC-----------------ccccccceeEEEE---CCEEEEEEEEeCCCcc
Confidence 7999999999999999999865321100 00 1111111111222 1244788999999974
Q ss_pred ccc----------ccccccccceEEEEecCCCc
Q psy15088 482 VTL----------LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~----------~l~~~~~ad~~v~vida~~g 504 (1291)
.+. ....+..+|++|+|+|+...
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~ 93 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSP 93 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCH
Confidence 321 22335678999999999765
No 363
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.69 E-value=9.1e-05 Score=77.92 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=52.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+++|||||++++....-.. ...+ .-|++.... .+.+ .+....+.+.||||
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~---------------t~~~~~~~~--~~~~---~~~~~~l~l~D~~g 61 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFIS---------------TIGIDFKIR--TIEL---DGKKIKLQIWDTAG 61 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-cccc---------------CccceEEEE--EEEE---CCEEEEEEEEeCCc
Confidence 4589999999999999999998542100 0000 002222111 1222 12456889999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ ..+..||++++++|+...
T Consensus 62 ~~~~~~~~~~~~~~ad~~i~v~d~~~~ 88 (167)
T cd01867 62 QERFRTITTAYYRGAMGIILVYDITDE 88 (167)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence 8654322 234578999999998764
No 364
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.68 E-value=6.9e-05 Score=79.02 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=51.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|.+...... ...-|.++ .++.+ ++..++++||||+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~-----------------~~t~g~~~----~~~~~-----~~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKV-----------------APTVGFTP----TKLRL-----DKYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccc-----------------cCcccceE----EEEEE-----CCEEEEEEECCCcH
Confidence 489999999999999999975411000 00113322 22333 67899999999996
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.++.+ .....+|++|+|+|+...
T Consensus 55 ~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 55 NFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCch
Confidence 54422 334577999999998864
No 365
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.68 E-value=8.9e-05 Score=76.37 Aligned_cols=66 Identities=21% Similarity=0.195 Sum_probs=52.9
Q ss_pred CceeEEecCCCccccHH--------HHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSD--------EVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~--------~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+.+++++||||+.++.. .+...+..+|++++|+|+...........+.. ..++|+++|+||+|...
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 45789999999977642 34567889999999999998777766666554 56899999999999864
No 366
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.68 E-value=0.00016 Score=82.60 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=66.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+++|+.++|||||+|+|+........... +....+..+.+++......+.. ++....++++||||..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~--------~~~~~~~~~T~~i~~~~~~i~~---~g~~~~l~iiDTpGfg 74 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPP--------DPAEEHIDKTVEIKSSKAEIEE---NGVKLKLTVIDTPGFG 74 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCC--------CccccccCCceEEEEEEEEEEE---CCEEEEEEEEecCCcc
Confidence 8999999999999999999866432211000 0011122333344444444443 1233679999999963
Q ss_pred ccc--------------------------ccc--cc--cccceEEEEecCCC-ccchhhHhhHHHHHhhcCccc
Q psy15088 482 VTL--------------------------LLP--DV--KGKNYLMNIFDTPG-MWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 482 ~~~--------------------------~l~--~~--~~ad~~v~vida~~-g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
+.. ..+ .+ .++++++.+++..+ ++.+.+..+.+.... +++.+
T Consensus 75 d~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi 147 (276)
T cd01850 75 DNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNII 147 (276)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEE
Confidence 211 011 11 16788888888775 677777777777654 45544
No 367
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.68 E-value=8.9e-05 Score=90.11 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=60.5
Q ss_pred CccccccCCCceeeecCceeEEecCCCccccHH--------HHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc
Q psy15088 198 PSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSD--------EVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA 269 (1291)
Q Consensus 198 as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~--------~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~ 269 (1291)
++.|++.....+.+ ++..++++||||+.++.. .....++.+|++|+|+|+..+.+.++. .+..+...++|
T Consensus 235 pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p 312 (442)
T TIGR00450 235 KGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP 312 (442)
T ss_pred CCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC
Confidence 44455544444444 367899999999865432 234678899999999999988776665 56666667899
Q ss_pred EEEEEEccCccc
Q psy15088 270 ITLCVNKIDRLM 281 (1291)
Q Consensus 270 ~ilvvNKiD~~~ 281 (1291)
+|+|+||+|+..
T Consensus 313 iIlV~NK~Dl~~ 324 (442)
T TIGR00450 313 FILVLNKIDLKI 324 (442)
T ss_pred EEEEEECccCCC
Confidence 999999999853
No 368
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.68 E-value=9.4e-05 Score=95.39 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=50.7
Q ss_pred CceeEEecCCCccccHH--------HHHH----HhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSD--------EVTA----AMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~--------~~~~----a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++++||||+.++.. +... ....+|++++|||+..... ...++.++++.++|+++|+||+|...
T Consensus 49 ~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE 126 (772)
T ss_pred ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh
Confidence 56899999999987642 1111 1247999999999988543 34567788899999999999999863
No 369
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.67 E-value=8.2e-05 Score=78.53 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=52.2
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+|+|+.++|||||+++|.+...... ....|.++.. +.+ .+..+.++|||
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----------------~~t~g~~~~~----i~~-----~~~~~~~~D~~ 66 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-----------------TPTQGFNIKT----VQS-----DGFKLNVWDIG 66 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-----------------CCCCCcceEE----EEE-----CCEEEEEEECC
Confidence 356899999999999999999976421110 0112433322 223 57889999999
Q ss_pred Cccccccc--ccccccceEEEEecCCC
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~ 503 (1291)
|+..+... ..+..+|++++|+|+..
T Consensus 67 G~~~~~~~~~~~~~~~~~ii~v~D~~~ 93 (173)
T cd04155 67 GQRAIRPYWRNYFENTDCLIYVIDSAD 93 (173)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEEeCCC
Confidence 98543211 22356788999999875
No 370
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.67 E-value=0.00012 Score=77.23 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=50.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||++++....-. ... + .+..+.-...+.. .+..+.+.++||||+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~--------~---------~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEY--------V---------PTVFDHYAVSVTV---GGKQYLLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCC--------C---------CceeeeeEEEEEE---CCEEEEEEEEeCCCcc
Confidence 7999999999999999999865311 000 0 0000110111112 1245778999999997
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..++ ....+|++++++|....
T Consensus 60 ~~~~~~~~~~~~~~~~ilv~~~~~~ 84 (174)
T cd04135 60 DYDRLRPLSYPMTDVFLICFSVVNP 84 (174)
T ss_pred cccccccccCCCCCEEEEEEECCCH
Confidence 654333 23467899999987754
No 371
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.67 E-value=7.2e-05 Score=78.00 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=50.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-----HHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-----RLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-----~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+++++||||+.+|..-....++.+|++++|+|+.+.-+-+.. .+.+.....++|+++|+||+|+..
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 3688999999999988888889999999999999874322221 122222234789999999999864
No 372
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.67 E-value=9.8e-05 Score=77.74 Aligned_cols=81 Identities=10% Similarity=0.175 Sum_probs=50.8
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++++...-. .... .++.+....++.+ .+.+..+.++||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~--~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYD-----------------PTIEDSYRKQVEI---DGRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccC-----------------CcchheEEEEEEE---CCEEEEEEEEeCCCcc
Confidence 7999999999999999999744311 0000 0111111111122 1245788999999997
Q ss_pred cccccccc--cccceEEEEecCCCc
Q psy15088 482 VTLLLPDV--KGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~~~--~~ad~~v~vida~~g 504 (1291)
.+..+... ..++.+++++|....
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~ 85 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSE 85 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCH
Confidence 66544332 367889999988765
No 373
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.66 E-value=9.9e-05 Score=77.25 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=51.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|.+++|||||+++|+...-.... ...++.+.....+.. .+....+.+.||||+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 62 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDS------------------KSTIGVEFATRSIQI---DGKTIKAQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEE---CCEEEEEEEEeCCCh
Confidence 38999999999999999999855311100 001112222222222 124467899999998
Q ss_pred ccccccc--cccccceEEEEecCCCc
Q psy15088 481 PVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
..+..+. ....++++|+|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (165)
T cd01868 63 ERYRAITSAYYRGAVGALLVYDITKK 88 (165)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECcCH
Confidence 6543222 23467889999998754
No 374
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.66 E-value=0.00012 Score=76.23 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEEcccCCChhHHHHHHH-hhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 403 VALVGHLHHGKTTMIDCLI-RQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 403 I~iiG~~~~GKsTl~~~ll-~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
|+++|+.++|||||++.|. ........... |.|.......+.. .+.++||||+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~--------~~~~~D~~g~~ 56 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP-----------------GKTQLINFFNVND--------KFRLVDLPGYG 56 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCC-----------------CcceeEEEEEccC--------eEEEecCCCcc
Q ss_pred cccc---------------cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchh
Q psy15088 482 VTLL---------------LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFV 526 (1291)
Q Consensus 482 ~~~~---------------l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv 526 (1291)
.... +...+.++.+++++|...........+.+.....+.|.++|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v 116 (170)
T cd01876 57 YAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVV 116 (170)
T ss_pred ccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEE
No 375
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.65 E-value=8.9e-05 Score=76.89 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=49.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+|+|||||+++|+...-. .... .++.+.-...+.. .+....+.++||||+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV--DEYD-----------------PTIEDSYRKQVVI---DGETCLLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--CCcC-----------------CcchheEEEEEEE---CCEEEEEEEEECCCCc
Confidence 7999999999999999999865311 0000 0000000011111 1234668899999997
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++++|....
T Consensus 61 ~~~~l~~~~~~~~~~~i~v~~~~~~ 85 (162)
T cd04138 61 EYSAMRDQYMRTGEGFLCVFAINSR 85 (162)
T ss_pred chHHHHHHHHhcCCEEEEEEECCCH
Confidence 554322 23457889999888754
No 376
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.65 E-value=0.0002 Score=74.52 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=50.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHH----HHcCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHA----VQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l----~~~~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+..|.......++.+|++|+|+|....-+.+....+ ..+ ...++|+++|+||+|+.
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 3688999999988887777888999999999998865443332222 222 23578899999999987
No 377
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.64 E-value=3.6e-06 Score=87.25 Aligned_cols=75 Identities=31% Similarity=0.714 Sum_probs=62.0
Q ss_pred CceeecCCCCccCccchHHHHHHH-HHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEE
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIK 694 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e-~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~ 694 (1291)
.+|++|||||+..|+..|...+.. ...+..+++|+++++.+.+|+.+ |+.+.+++|+..|...+.|++.
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~----------d~~~~i~~Rl~~y~~~~~~i~~ 144 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ----------DNEEVIKKRLEEYRENTEPILD 144 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT----------GSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc----------CCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998875542 23466788999999999999887 7889999999999999999999
Q ss_pred eecchh
Q psy15088 695 FFEAKN 700 (1291)
Q Consensus 695 ~sa~k~ 700 (1291)
+|..+|
T Consensus 145 ~y~~~g 150 (151)
T PF00406_consen 145 YYKEQG 150 (151)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 988766
No 378
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.64 E-value=8.7e-05 Score=77.78 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=49.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++++... .... +..+. + ++....+. + .++...+.++||||+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~--------~~~t~------~-~~~~~~~~--~---~~~~~~~~i~D~~g~~ 58 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGE--------YDPNL------E-SLYSRQVT--I---DGEQVSLEILDTAGQQ 58 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccc--------cCCCh------H-HhceEEEE--E---CCEEEEEEEEECCCCc
Confidence 58999999999999999998432 1100 00000 0 01111111 1 1245678999999997
Q ss_pred c-c--cccccccccceEEEEecCCCc
Q psy15088 482 V-T--LLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~-~--~~l~~~~~ad~~v~vida~~g 504 (1291)
. + .....+..+|++++++|+...
T Consensus 59 ~~~~~~~~~~~~~~d~~i~v~d~~~~ 84 (165)
T cd04146 59 QADTEQLERSIRWADGFVLVYSITDR 84 (165)
T ss_pred ccccchHHHHHHhCCEEEEEEECCCH
Confidence 3 1 233445678999999999866
No 379
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.64 E-value=0.00015 Score=79.80 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=53.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.||.++|..++||||++|.|++....-.... ....|......+..+ .+..+++|||||.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~----------------~~~~t~~~~~~~~~~-----~g~~v~VIDTPGl 59 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSS----------------AKSVTQECQKYSGEV-----DGRQVTVIDTPGL 59 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TT----------------TSS--SS-EEEEEEE-----TTEEEEEEE--SS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccc----------------cCCcccccceeeeee-----cceEEEEEeCCCC
Confidence 3899999999999999999998864221110 012333333333344 7899999999997
Q ss_pred cccc------------ccc-cccccceEEEEecCCCccchhhHhhHHHH
Q psy15088 481 PVTL------------LLP-DVKGKNYLMNIFDTPGMWDIHVRKFSKKA 516 (1291)
Q Consensus 481 ~~~~------------~l~-~~~~ad~~v~vida~~g~~~qt~~~~~~~ 516 (1291)
.+.. .+. .....+++++|+.+. .++..++..+...
T Consensus 60 ~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l 107 (212)
T PF04548_consen 60 FDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELL 107 (212)
T ss_dssp EETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHH
Confidence 3210 000 112457788888777 6766666655543
No 380
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.63 E-value=0.00015 Score=75.17 Aligned_cols=66 Identities=26% Similarity=0.238 Sum_probs=55.8
Q ss_pred ceeEEecCCCccccH--------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFS--------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~--------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+.+.. ......+..+|++++|+|+.......+..+++.+...+.|+++|+||+|..
T Consensus 51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 51 AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred eEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 478899999986532 234566899999999999999877788888888888899999999999986
No 381
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.62 E-value=8.6e-05 Score=77.54 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=51.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++|....-.. ...+ +. |.+.....+.+ .+....+++.||||+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~-----t~----------~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLP-----TI----------GIDYGVKKVSV-----RNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-----cc----------ceeEEEEEEEE-----CCeEEEEEEEECCccH
Confidence 79999999999999999998654210 0000 00 11111111111 1256889999999986
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++|+++|+...
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~D~~~~ 85 (168)
T cd04119 61 EYLEVRNEFYKDTQGVLLVYDVTDR 85 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCH
Confidence 443222 23467899999997754
No 382
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.62 E-value=0.00013 Score=75.99 Aligned_cols=84 Identities=15% Similarity=0.277 Sum_probs=51.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|....-. . +....+..+.....+.+. ..+....+++.||||+.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-----~-------------~~~~t~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-----K-------------DYKKTIGVDFLEKQIFLR-QSDEDVRLMLWDTAGQE 62 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----C-------------CCCCcEEEEEEEEEEEEc-CCCCEEEEEEeeCCchH
Confidence 7999999999999999999854211 0 000011111111112221 11356789999999986
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~v~v~d~~~~ 87 (162)
T cd04106 63 EFDAITKAYYRGAQACILVFSTTDR 87 (162)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCH
Confidence 44322 234467899999998764
No 383
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.62 E-value=9.2e-05 Score=86.64 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=54.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-.|+|+|.+|+|||||+++|....- .+...+ ++|+......+.+. +...|.++||||+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~-----------------fTT~~p~ig~v~~~----~~~~~~i~D~PGl 215 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYP-----------------FTTLVPNLGVVRVD----DGRSFVIADIPGL 215 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCC-----------------CCccCCEEEEEEeC----CceEEEEEeCCCc
Confidence 3899999999999999999976531 111111 44444433334441 3488999999998
Q ss_pred ccc---------cccccccccceEEEEecCCC
Q psy15088 481 PVT---------LLLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~---------~~l~~~~~ad~~v~vida~~ 503 (1291)
... ..++.+..++++++|+|+..
T Consensus 216 i~~a~~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 216 IEGASEGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred ccCCcccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 311 12444567899999999875
No 384
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.62 E-value=0.00016 Score=76.70 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=51.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc--hhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM--LNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~--~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++|||+|+.++-. ....++.+.++. .++|+++++||+|...
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 3478899999999888888888999999999999987522 222233334332 3589999999999863
No 385
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.61 E-value=9.7e-05 Score=79.17 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=50.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-----HHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-----ERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-----~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..+++.||||+..|.......++.||++|+|+|+...-..+. .++.+.....++|+++|+||+|..
T Consensus 51 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 51 GITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred ceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 3478999999998887766777889999999999887532222 223333344689999999999975
No 386
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.61 E-value=0.00033 Score=72.92 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=50.9
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.++++||||+..|.......++.+|++++|+|+...-+.+...-| ..+.+ .++|+++|+||+|...
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 688999999999888888899999999999999875444333222 22222 4689999999999764
No 387
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.61 E-value=0.00013 Score=79.35 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=50.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-----HHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-----RLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-----~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+++++||||+..|.......+..+|++|||+|+.++-.-+.. .+.+.....++|+++|+||+|+..
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 3788999999999887677789999999999999875333322 222222235799999999999864
No 388
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.61 E-value=0.00026 Score=80.39 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=76.8
Q ss_pred CceeEEecCCCccccHHHHHHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHH
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDA 291 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~ 291 (1291)
++-+.++||.||+.+...+++++ +..|..++||-|.+|++-.|++++-.+...+.|+|++++|+|....
T Consensus 200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d--------- 270 (527)
T COG5258 200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPD--------- 270 (527)
T ss_pred ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcH---------
Confidence 56789999999999999998887 5689999999999999999999999999999999999999998641
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy15088 292 YYKIKHIIDEINGLLRYLL 310 (1291)
Q Consensus 292 ~~~~~~~~~~v~~~~~~~~ 310 (1291)
.+++.+.+++.++++..+
T Consensus 271 -dr~~~v~~ei~~~Lk~v~ 288 (527)
T COG5258 271 -DRFQGVVEEISALLKRVG 288 (527)
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 467788888888887644
No 389
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.61 E-value=0.00014 Score=76.24 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=50.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++++...-.. ...+ +.. ....+ .+.+.. +...+.+.||||..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~-----t~~---------~~~~~--~~~~~~-----~~~~l~i~Dt~G~~ 60 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRE-SYIP-----TIE---------DTYRQ--VISCSK-----NICTLQITDTTGSH 60 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCC-----cch---------heEEE--EEEECC-----EEEEEEEEECCCCC
Confidence 69999999999999999998543110 0000 000 01111 111111 46789999999997
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++|+|+|....
T Consensus 61 ~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (165)
T cd04140 61 QFPAMQRLSISKGHAFILVYSVTSK 85 (165)
T ss_pred cchHHHHHHhhcCCEEEEEEECCCH
Confidence 655332 23467899999998765
No 390
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.61 E-value=0.00011 Score=76.95 Aligned_cols=81 Identities=11% Similarity=0.177 Sum_probs=50.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+|+|||||+++++... ...... .++.+.....+.. .+..+.+++.||||+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~--~~~~~~-----------------~t~~~~~~~~~~~---~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGI--FVEKYD-----------------PTIEDSYRKQVEV---DGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCcccC-----------------CcchheEEEEEEE---CCEEEEEEEEECCCcc
Confidence 79999999999999999998432 111000 1111111111222 2246778899999997
Q ss_pred ccccccc--ccccceEEEEecCCCc
Q psy15088 482 VTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
.+..+.. ...+|++++++|....
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~ 85 (164)
T cd04175 61 QFTAMRDLYMKNGQGFVLVYSITAQ 85 (164)
T ss_pred cchhHHHHHHhhCCEEEEEEECCCH
Confidence 5553332 3467899999998654
No 391
>PTZ00369 Ras-like protein; Provisional
Probab=97.60 E-value=0.00011 Score=79.24 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=51.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|..|+|||||+++++...-.- .. ..+. |.+.. ..+.+ .+....+++.||||+.
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~----~~t~----------~~~~~-~~~~~-----~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQNHFID--EY----DPTI----------EDSYR-KQCVI-----DEETCLLDILDTAGQE 64 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--Cc----CCch----------hhEEE-EEEEE-----CCEEEEEEEEeCCCCc
Confidence 89999999999999999998643110 00 0000 11110 11111 1256788999999998
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++|+|+...
T Consensus 65 ~~~~l~~~~~~~~d~iilv~D~s~~ 89 (189)
T PTZ00369 65 EYSAMRDQYMRTGQGFLCVYSITSR 89 (189)
T ss_pred cchhhHHHHhhcCCEEEEEEECCCH
Confidence 665433 34467899999998765
No 392
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.59 E-value=0.00027 Score=73.61 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=49.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch-hHHHHHHHHHHc---CCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML-NTERLLKHAVQE---KMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~-~~~~~~~~l~~~---~~~~ilvvNKiD~~ 280 (1291)
.++.++||||+..+.......++.+|++|||+|+...-.- +....+..++.. +.|+++++||+|..
T Consensus 50 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 50 VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 3788999999988887777788999999999999864221 223333444433 47899999999976
No 393
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.59 E-value=0.00011 Score=89.79 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCccccccCCCceeeecCceeEEecCCCccccHH--------HHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC
Q psy15088 197 SPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSD--------EVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM 268 (1291)
Q Consensus 197 ~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~--------~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~ 268 (1291)
.++.|+++....+.+ ++..++++||||+.++.. .+...++.||++|+|+|+..+...++..++.. ..++
T Consensus 246 ~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~ 322 (449)
T PRK05291 246 IAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDK 322 (449)
T ss_pred CCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCC
Confidence 344455554444444 367899999999976532 24457889999999999998887776666654 4578
Q ss_pred cEEEEEEccCccc
Q psy15088 269 AITLCVNKIDRLM 281 (1291)
Q Consensus 269 ~~ilvvNKiD~~~ 281 (1291)
|+++|+||+|...
T Consensus 323 piiiV~NK~DL~~ 335 (449)
T PRK05291 323 PVIVVLNKADLTG 335 (449)
T ss_pred CcEEEEEhhhccc
Confidence 9999999999853
No 394
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.58 E-value=0.00031 Score=84.06 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=50.0
Q ss_pred ceeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCC----CCchhHHHHHHHHHHc-----CCcEEEEEEccC
Q psy15088 215 RNNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAE----GVMLNTERLLKHAVQE-----KMAITLCVNKID 278 (1291)
Q Consensus 215 ~~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~----g~~~~~~~~~~~l~~~-----~~~~ilvvNKiD 278 (1291)
..|.++||||+.. ....+...++.+|++|+|||+.. ....+...+.+.+.+. ++|+++|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 4699999999864 34567788999999999999862 2333445566666653 689999999999
Q ss_pred cc
Q psy15088 279 RL 280 (1291)
Q Consensus 279 ~~ 280 (1291)
..
T Consensus 287 l~ 288 (390)
T PRK12298 287 LL 288 (390)
T ss_pred cC
Confidence 75
No 395
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.58 E-value=0.00011 Score=77.31 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=50.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++|+...-.... . .+ .|.+ -....+.+ .+....++++||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~-----~-~t----------~~~~--~~~~~~~~---~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY-----K-AT----------IGAD--FLTKEVTV---DDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-----C-Cc----------cceE--EEEEEEEE---CCEEEEEEEEeCCChH
Confidence 7999999999999999999865311000 0 00 0111 11111222 1245678899999997
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ ..+..+|++|+++|+...
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNP 85 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCH
Confidence 54422 344567999999998754
No 396
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.57 E-value=0.00012 Score=76.62 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=53.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHHc--CCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQE--KMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~~--~~~~ilvvNKiD~~ 280 (1291)
..+++.||||+..|.......++.+|++|+|+|+..+...++. ..+..+++. ++|+++|.||+|..
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 3688999999999988888899999999999999876654443 333445443 78999999999974
No 397
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.57 E-value=0.00017 Score=77.39 Aligned_cols=67 Identities=18% Similarity=0.086 Sum_probs=49.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC--chhHHHHHHHHH---HcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV--MLNTERLLKHAV---QEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~--~~~~~~~~~~l~---~~~~~~ilvvNKiD~~ 280 (1291)
+.++.++||||+..+.......++.+|++|+|+|+.+.- ......+.+.++ ..++|+++|+||+|..
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 457889999999888777778889999999999997642 111112222222 2578999999999985
No 398
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.57 E-value=9.3e-05 Score=77.40 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=48.1
Q ss_pred EecCCCc----cccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 219 KCLPPGH----VNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 219 liDtpG~----~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
++||||. .++..++..+++.||++|||+|+.++....+..+++. ..++|+++++||+|..
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 5899996 4577778888999999999999998876655544443 2478999999999975
No 399
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.57 E-value=0.00012 Score=77.19 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=50.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|....- ... ..|+......+.+ .+..+.++||||+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~-------------------~~T~~~~~~~~~~-----~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQP-------------------IPTIGFNVETVEY-----KNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCc-------------------CCcCceeEEEEEE-----CCEEEEEEECCCCh
Confidence 478999999999999999975421 000 1111111112233 67899999999986
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++|+|+...
T Consensus 55 ~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 55 KLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred hcchHHHHHhccCCEEEEEEeCCcH
Confidence 54422 334577999999998753
No 400
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.55 E-value=0.00011 Score=76.21 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=50.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC-chhHHHHH----HHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV-MLNTERLL----KHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~-~~~~~~~~----~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..+.......+..+|++++|+|+..+- .......+ +.+...+.|+++|+||+|+..
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 43 VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred EEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 47889999999988877788889999999999998752 11122222 222245889999999999864
No 401
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.55 E-value=0.00014 Score=76.36 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=51.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+|+|..++|||||+++++...-... ... .-|++.... .+.. .+....+.++||||+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~---------------t~~~~~~~~--~~~~---~~~~~~~~i~D~~G~ 61 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES-YIS---------------TIGVDFKIR--TIEL---DGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-CCC---------------ccceeEEEE--EEEE---CCEEEEEEEEECCCc
Confidence 3899999999999999999985431110 000 002222222 2222 224568899999999
Q ss_pred cccccc--ccccccceEEEEecCCC
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~ 503 (1291)
..+..+ .....+|++++|+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 62 ERFRTITSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred HhHHHHHHHHhCcCCEEEEEEECcC
Confidence 755432 22346799999999875
No 402
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.55 E-value=0.00013 Score=77.24 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=50.1
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh--HHHHHHHH---HHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN--TERLLKHA---VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~--~~~~~~~l---~~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++++|+|+...-.-. ...+..++ ...++|+++|+||+|...
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 347899999999988777778899999999999998752211 11122222 225789999999999864
No 403
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.54 E-value=0.00018 Score=75.76 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=51.1
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh-HHHHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-TERLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~-~~~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
+.+++++||||+..|.......++.||++|+|+|+...-..+ ....+..+.+ .++|+++|+||+|+..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 457899999999888877788899999999999988642221 2223333322 4789999999999864
No 404
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.53 E-value=0.00021 Score=75.45 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=49.5
Q ss_pred EEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccc
Q psy15088 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV 482 (1291)
Q Consensus 403 I~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~ 482 (1291)
|+|+|..++|||||+++++...-... +.. +..+.-...+.. .++...+.+.||||...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~----------~~~---------~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED----------YVP---------TVFENYSADVEV---DGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC----------CCC---------cEEeeeeEEEEE---CCEEEEEEEEECCCCcc
Confidence 57999999999999999986431100 000 000000001111 22456789999999976
Q ss_pred cccccc--ccccceEEEEecCCCc
Q psy15088 483 TLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 483 ~~~l~~--~~~ad~~v~vida~~g 504 (1291)
+..+.. ...+|++|+++|+...
T Consensus 59 ~~~~~~~~~~~~d~~ilv~d~~~~ 82 (174)
T smart00174 59 YDRLRPLSYPDTDVFLICFSVDSP 82 (174)
T ss_pred cchhchhhcCCCCEEEEEEECCCH
Confidence 553333 3478999999998754
No 405
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.53 E-value=0.00016 Score=75.20 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=50.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.|+|+|.+++|||||+++|....-... .+ ..|.++.. +.++ ..+.+.+.||||+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~---------------t~~~~~~~----~~~~----~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP---------------TVGFNVEM----LQLE----KHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC---------------ccCcceEE----EEeC----CceEEEEEECCCCH
Confidence 378999999999999999986532110 00 11222221 1111 46789999999986
Q ss_pred cccc--cccccccceEEEEecCCCc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.. ......+|++|+|+|+...
T Consensus 56 ~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 56 KMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred hHHHHHHHHhccCCEEEEEEECCcH
Confidence 4432 1234567899999999875
No 406
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.53 E-value=0.00015 Score=76.66 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=51.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|+.++|||||+++|....-... .+ .-|.++. .+.+ .+..+.+.||||+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~---------------t~g~~~~----~~~~-----~~~~~~l~Dt~G~ 63 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSVTT--IP---------------TVGFNVE----TVTY-----KNVKFNVWDVGGQ 63 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCccc--cC---------------CcccceE----EEEE-----CCEEEEEEECCCC
Confidence 3899999999999999999974321100 00 0022221 1222 5788999999999
Q ss_pred cccccc--ccccccceEEEEecCCCc
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
..+..+ .....+|++|+|+|+...
T Consensus 64 ~~~~~~~~~~~~~a~~ii~v~D~t~~ 89 (168)
T cd04149 64 DKIRPLWRHYYTGTQGLIFVVDSADR 89 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCch
Confidence 654422 234578999999998764
No 407
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.52 E-value=0.00041 Score=65.47 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeE
Q psy15088 790 EGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWV 869 (1291)
Q Consensus 790 ~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv 869 (1291)
+.|+.++|.++|...+.| .+..|||.+|+++.||+|++++. ....+|++|... ..++++|.||+.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g-~vv~G~v~~G~i~~gd~v~i~P~---------~~~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIG-TVPVGRVETGVLKPGMVVTFAPA---------GVTGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCce-EEEEEEEecceeecCCEEEECCC---------CcEEEEEEEEEC----CcCcCEECCCCEE
Confidence 358999999999876655 48999999999999999999873 246788888633 5678999999999
Q ss_pred EE
Q psy15088 870 LI 871 (1291)
Q Consensus 870 ~I 871 (1291)
+|
T Consensus 68 ~i 69 (91)
T cd03693 68 GF 69 (91)
T ss_pred EE
Confidence 87
No 408
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.51 E-value=0.00018 Score=78.17 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=59.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|+.|+|||||+|+|++...... +. ..++.. .+|+... .+..+ ....+.++||||..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~--~~-----~~~~~~------~~t~~~~--~~~~~----~~~~l~l~DtpG~~ 63 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEE--GA-----APTGVV------ETTMKRT--PYPHP----KFPNVTLWDLPGIG 63 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCC--Cc-----cccCcc------ccccCce--eeecC----CCCCceEEeCCCCC
Confidence 799999999999999999987532110 00 000100 1121111 11111 23468999999984
Q ss_pred c-------ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 482 V-------TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 482 ~-------~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
. +........+|+++++. .+.++..+..+.......+.+.++
T Consensus 64 ~~~~~~~~~l~~~~~~~~d~~l~v~--~~~~~~~d~~~~~~l~~~~~~~il 112 (197)
T cd04104 64 STAFPPDDYLEEMKFSEYDFFIIIS--STRFSSNDVKLAKAIQCMGKKFYF 112 (197)
T ss_pred cccCCHHHHHHHhCccCcCEEEEEe--CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 2 11112234567777664 355777777888877777766654
No 409
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.51 E-value=8.9e-05 Score=74.84 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=53.2
Q ss_pred EEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccccc
Q psy15088 405 LVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTL 484 (1291)
Q Consensus 405 iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~ 484 (1291)
|+|++++|||||++++.+..... .++..|. ........ .....+..+.++||||+....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-------------------~~~~~t~-~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~ 59 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-------------------EEYETTI-IDFYSKTI-EVDGKKVKLQIWDTAGQERFR 59 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-------------------cccccch-hheeeEEE-EECCEEEEEEEEecCChHHHH
Confidence 57999999999999998765310 0111221 11111111 111247889999999986443
Q ss_pred c--cccccccceEEEEecCCCccchhhHh
Q psy15088 485 L--LPDVKGKNYLMNIFDTPGMWDIHVRK 511 (1291)
Q Consensus 485 ~--l~~~~~ad~~v~vida~~g~~~qt~~ 511 (1291)
. ......+|++++|+|+..+...++..
T Consensus 60 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 88 (157)
T cd00882 60 SLRRLYYRGADGIILVYDVTDRESFENVK 88 (157)
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 2 23445678999999999886544443
No 410
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.50 E-value=0.00018 Score=75.69 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=52.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
+.+++++||||+..+.......++.+|+++||+|+...-+-+.. .....++. .++|+++|+||+|+..
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 34789999999988877777888999999999998876555442 22233443 3789999999999864
No 411
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.50 E-value=0.0003 Score=74.32 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+|+|..++|||||+.+|+...-.... . .+. +... ...+.+ .++...+.+.||||+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~-~-----~t~----------~~~~---~~~~~~---~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-V-----PTV----------FENY---VADIEV---DGKQVELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-C-----Ccc----------ccce---EEEEEE---CCEEEEEEEEeCCCc
Confidence 48999999999999999999865321000 0 000 0000 011112 224567899999999
Q ss_pred cccccc--ccccccceEEEEecCCC
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~ 503 (1291)
..+..+ .....+|++++++|...
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~~~~~ 84 (175)
T cd01870 60 EDYDRLRPLSYPDTDVILMCFSIDS 84 (175)
T ss_pred hhhhhccccccCCCCEEEEEEECCC
Confidence 755433 23457789998888764
No 412
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.50 E-value=0.00022 Score=74.89 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=46.4
Q ss_pred eeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCCC-CchhH-HHHHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAEG-VMLNT-ERLLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~g-~~~~~-~~~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
+++++||||+.+ +.......++.+|++++|+|+..+ -..+. ....+.+++ .++|+++|+||+|...
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 789999999742 334455667789999999999876 22222 233334433 3689999999999753
No 413
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.50 E-value=0.0003 Score=75.91 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=50.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|.+++|||||+++|+...-. ... +.. ..|.+..... +.. .+....+++.||||..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~--------~~~------t~~~~~~~~~--~~~---~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGP--------YQN------TIGAAFVAKR--MVV---GERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcC--------ccc------ceeeEEEEEE--EEE---CCEEEEEEEEECCCch
Confidence 7999999999999999999864311 000 000 0011111111 112 2245677899999986
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++|+|+...
T Consensus 62 ~~~~~~~~~~~~~d~iilv~d~~~~ 86 (193)
T cd04118 62 RYEAMSRIYYRGAKAAIVCYDLTDS 86 (193)
T ss_pred hhhhhhHhhcCCCCEEEEEEECCCH
Confidence 544332 23468999999998654
No 414
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.49 E-value=0.00017 Score=74.96 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=49.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+|+|||||+++|+...-. ... ..+..|.. .....+ .++...+.++||||+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~----~~~~~~~~-------------~~~~~~---~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDY----EPTKADSY-------------RKKVVL---DGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--ccc----CCcchhhE-------------EEEEEE---CCEEEEEEEEECCChh
Confidence 7999999999999999999854311 100 00011111 001111 2256789999999996
Q ss_pred cccc--cccccccceEEEEecCCCc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.. -.....+|++++++|....
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~ 84 (164)
T cd04139 60 DYAAIRDNYHRSGEGFLLVFSITDM 84 (164)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCH
Confidence 5432 2234456788888887653
No 415
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.48 E-value=0.0002 Score=74.48 Aligned_cols=103 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|.+|+|||||+++++...-....... ........+.+.- ....+.|.||||..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t-----------------~~~~~~~~~~~~~-----~~~~l~i~Dt~G~~ 60 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFVEKYDPT-----------------IEDSYRKQIEVDG-----QQCMLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCc-----------------hhhhEEEEEEECC-----EEEEEEEEECCCcc
Q ss_pred ccccccccc--ccceEEEEecCCCc-----cchhhHhhHHHHHhhcCccchh
Q psy15088 482 VTLLLPDVK--GKNYLMNIFDTPGM-----WDIHVRKFSKKAAHASAQRSFV 526 (1291)
Q Consensus 482 ~~~~l~~~~--~ad~~v~vida~~g-----~~~qt~~~~~~~~~~~~~~~fv 526 (1291)
.+..+...- .+|++++++|.... +..-...+.......++|.++|
T Consensus 61 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 112 (163)
T cd04136 61 QFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLV 112 (163)
T ss_pred ccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
No 416
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.48 E-value=0.0015 Score=74.83 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=59.4
Q ss_pred eeEEecCCCccccHHH---------------------HHHHhh-------hcCcEEEEEECC-CCCchhHHHHHHHHHHc
Q psy15088 216 NNNKCLPPGHVNFSDE---------------------VTAAMR-------LCDGVVLFVDAA-EGVMLNTERLLKHAVQE 266 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~---------------------~~~a~~-------~~D~~l~vVD~~-~g~~~~~~~~~~~l~~~ 266 (1291)
+++++||||+.++..+ .....+ .+|++|+++++. .|+.+.+.++++.+.+
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~- 142 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK- 142 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-
Confidence 7999999998765321 111112 478899999977 4899999999999986
Q ss_pred CCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhc
Q psy15088 267 KMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLL 310 (1291)
Q Consensus 267 ~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 310 (1291)
++|+|+|+||+|.... .+ +....+.+...+...+
T Consensus 143 ~v~vi~VinK~D~l~~------~e----~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 143 RVNIIPVIAKADTLTP------EE----LKEFKQRIMEDIEEHN 176 (276)
T ss_pred cCCEEEEEECCCcCCH------HH----HHHHHHHHHHHHHHcC
Confidence 8999999999998531 12 2234455666666555
No 417
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.48 E-value=0.00013 Score=75.42 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCC--CeEEEEEeCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK--NYLMNIFDTPA 479 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~--~~~~~liDTpG 479 (1291)
+|+|+|.+++|||||+++|+... ...... .++.+.....+.+ . .+.+.++||||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g 56 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYD-----------------PTIEDSYRKTIVV-----DGETYTLDILDTAG 56 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcC-----------------CChhHeEEEEEEE-----CCEEEEEEEEECCC
Q ss_pred ccccc--ccccccccceEEEEecCCC
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~ 503 (1291)
+..+. .......+|++++|+|...
T Consensus 57 ~~~~~~~~~~~~~~~~~~i~v~d~~~ 82 (160)
T cd00876 57 QEEFSAMRDLYIRQGDGFILVYSITD 82 (160)
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCC
No 418
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.47 E-value=0.00066 Score=70.54 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=50.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHH-HHHcC--CcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKH-AVQEK--MAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~-l~~~~--~~~ilvvNKiD~~ 280 (1291)
+++++||||+..+.......++.+|++++|+|....-+.+... .+.. .+..+ +|+++++||+|..
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 6889999999988887888899999999999998754433322 2222 23333 8999999999985
No 419
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.47 E-value=0.00038 Score=72.96 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=46.0
Q ss_pred CceeEEecCCCccccH--------HHHHHHh-hhcCcEEEEEECCCCCc---hhHHHHHHHHHHc--CCcEEEEEEccCc
Q psy15088 214 TRNNNKCLPPGHVNFS--------DEVTAAM-RLCDGVVLFVDAAEGVM---LNTERLLKHAVQE--KMAITLCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~--------~~~~~a~-~~~D~~l~vVD~~~g~~---~~~~~~~~~l~~~--~~~~ilvvNKiD~ 279 (1291)
+.+++++||||+.+.. .....++ ..+|++|+|+|+..... ......+..+++. ++|+++|+||+|.
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl 125 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDL 125 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcccc
Confidence 4589999999985311 1223333 34799999999986432 2223455666655 7999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 126 ~~ 127 (168)
T cd01897 126 LT 127 (168)
T ss_pred Cc
Confidence 63
No 420
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.47 E-value=0.00028 Score=73.14 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|+........... -+.+.....+.+.. ....++++||||+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHEST----------------TQASFFQKTVNIGG-----KRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc----------------cceeEEEEEEEECC-----EEEEEEEEECCchH
Q ss_pred ccccccccc--ccceEEEEecCCCccchhhHhhHHHHHhh----cCccchh
Q psy15088 482 VTLLLPDVK--GKNYLMNIFDTPGMWDIHVRKFSKKAAHA----SAQRSFV 526 (1291)
Q Consensus 482 ~~~~l~~~~--~ad~~v~vida~~g~~~qt~~~~~~~~~~----~~~~~fv 526 (1291)
.+..+...- .+|++++|+|+...-..+....+...... ++|.++|
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv 111 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIV 111 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
No 421
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.47 E-value=0.00039 Score=73.63 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=55.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+++++|..++|||||+.+++... ...... .++.+.-...+.. .+....+.++||||+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPTEYV-----------------PTAFDNFSVVVLV---DGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCC-----------------CceeeeeeEEEEE---CCEEEEEEEEECCCCh
Confidence 68999999999999999987532 110000 1111111111112 1245788999999996
Q ss_pred cccccc--cccccceEEEEecCCCc--cchhhHhhHHHH
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM--WDIHVRKFSKKA 516 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g--~~~qt~~~~~~~ 516 (1291)
.+..++ ....+|++|+++|.... ++.....+....
T Consensus 60 ~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~ 98 (173)
T cd04130 60 EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI 98 (173)
T ss_pred hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 554333 23578999999998764 433333444443
No 422
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.46 E-value=0.00024 Score=83.88 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=52.2
Q ss_pred ccccCCCceeeecCceeEEecCCCccc-c-------HHHHHHHhhhcCcEEEEEECCCCCchhHH----HHHHHHHHcCC
Q psy15088 201 YCSNKSHSWEIVCTRNNNKCLPPGHVN-F-------SDEVTAAMRLCDGVVLFVDAAEGVMLNTE----RLLKHAVQEKM 268 (1291)
Q Consensus 201 ~~~~~~~~~~ii~~~~~~liDtpG~~~-~-------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~----~~~~~l~~~~~ 268 (1291)
|++.....+.+.++..+.++||||+.. . ...+...+..||++|+|+|+......+.. .+++.+...++
T Consensus 223 T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~ 302 (351)
T TIGR03156 223 TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDI 302 (351)
T ss_pred ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCC
Confidence 333333333432356899999999832 1 12244568899999999999876554432 23333333478
Q ss_pred cEEEEEEccCcc
Q psy15088 269 AITLCVNKIDRL 280 (1291)
Q Consensus 269 ~~ilvvNKiD~~ 280 (1291)
|+++|+||+|..
T Consensus 303 piIlV~NK~Dl~ 314 (351)
T TIGR03156 303 PQLLVYNKIDLL 314 (351)
T ss_pred CEEEEEEeecCC
Confidence 999999999985
No 423
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.46 E-value=0.00017 Score=74.12 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=49.3
Q ss_pred EEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccc
Q psy15088 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV 482 (1291)
Q Consensus 403 I~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~ 482 (1291)
|+|+|+.++|||||+++|.+..-.. ++.+ .+..+. ..+.+ .+..+.++||||+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-------------~~~~-----t~~~~~--~~~~~-----~~~~~~~~D~~g~~~ 56 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-------------DTIP-----TVGFNM--RKVTK-----GNVTLKVWDLGGQPR 56 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-------------CccC-----CCCcce--EEEEE-----CCEEEEEEECCCCHh
Confidence 7899999999999999997653110 0000 111111 11222 458899999999965
Q ss_pred cccc--ccccccceEEEEecCCCc
Q psy15088 483 TLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 483 ~~~l--~~~~~ad~~v~vida~~g 504 (1291)
++.+ .....+|++++|+|+...
T Consensus 57 ~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 57 FRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCH
Confidence 4422 234567899999998753
No 424
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.00056 Score=72.62 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred ceeEEecCCCccc-------------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVN-------------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~-------------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.+||-||+-= +..+-+..=..-.+++++||++.++...|+++++++...++|+++++||+|...
T Consensus 70 ~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 70 DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK 149 (200)
T ss_pred CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 3588999999831 111222222335778999999999999999999999999999999999999875
No 425
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.44 E-value=0.00027 Score=74.28 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=50.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh-HHHHHH-HHHH-cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-TERLLK-HAVQ-EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~-~~~~~~-~l~~-~~~~~ilvvNKiD~~~ 281 (1291)
+.++.+.||||+..|.......++.||++|+|+|+.+..... .+..+. .++. .++|+++|.||+|+..
T Consensus 43 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 43 DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 347889999999999887888899999999999987743211 122222 3222 4789999999999864
No 426
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.44 E-value=0.00027 Score=89.10 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=49.3
Q ss_pred CceeEEecCCCccccHHH-----HH---HHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDE-----VT---AAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~-----~~---~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++++||||+.++... +. ...+.+|++++|+|+... ........++.+.++|+++|+||+|...
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 557899999999876431 22 233578999999999872 2344555677778999999999999853
No 427
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.43 E-value=0.00027 Score=74.50 Aligned_cols=68 Identities=22% Similarity=0.136 Sum_probs=46.9
Q ss_pred CceeEEecCCCcccc-------HHHHHHHhhhcCcEEEEEECCCCC-----chh--HHHHHHHHH----------HcCCc
Q psy15088 214 TRNNNKCLPPGHVNF-------SDEVTAAMRLCDGVVLFVDAAEGV-----MLN--TERLLKHAV----------QEKMA 269 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~-------~~~~~~a~~~~D~~l~vVD~~~g~-----~~~--~~~~~~~l~----------~~~~~ 269 (1291)
+.++.++||||+.+. ..+....++.+|++++|+|+.... .+. ...+...+. ..++|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 457899999998532 234566788999999999998763 221 112222222 14789
Q ss_pred EEEEEEccCccc
Q psy15088 270 ITLCVNKIDRLM 281 (1291)
Q Consensus 270 ~ilvvNKiD~~~ 281 (1291)
+++|+||+|...
T Consensus 123 ~ivv~NK~Dl~~ 134 (176)
T cd01881 123 VIYVLNKIDLDD 134 (176)
T ss_pred eEEEEEchhcCc
Confidence 999999999864
No 428
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.43 E-value=0.00029 Score=74.07 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=51.8
Q ss_pred EEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCccc
Q psy15088 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV 482 (1291)
Q Consensus 403 I~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~ 482 (1291)
|+++|..++|||||++++....-. .. ..+. -|.. ...+.+ ++..+.+.||||+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~------------~~pt---~g~~----~~~i~~-----~~~~l~i~Dt~G~~~ 56 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ES------------VVPT---TGFN----SVAIPT-----QDAIMELLEIGGSQN 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-cc------------cccc---CCcc----eEEEee-----CCeEEEEEECCCCcc
Confidence 789999999999999999855211 00 0000 0111 122223 678899999999976
Q ss_pred cccc--ccccccceEEEEecCCCc
Q psy15088 483 TLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 483 ~~~l--~~~~~ad~~v~vida~~g 504 (1291)
++.+ ..+..+|++|+|+|+...
T Consensus 57 ~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 57 LRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCH
Confidence 5533 345678999999998775
No 429
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.42 E-value=0.00054 Score=74.61 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=53.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHHH--cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAVQ--EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~~--~~~~~ilvvNKiD~~ 280 (1291)
.++.+.||||...|.......++.+|++|+|+|.....+.+....| ..+++ .++|++||.||+|+.
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 3788999999999988778889999999999999987655544333 22444 478999999999975
No 430
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.41 E-value=0.00086 Score=72.32 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=51.3
Q ss_pred ceeEEecCCCccc----------cHHHHH---HHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVN----------FSDEVT---AAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~----------~~~~~~---~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.|+||||+.. +..-+. .+...++++++|+|+..+....+.++.+++...++|+++++||+|...
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 3788999999632 222222 333445789999999988888888888888889999999999999853
No 431
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.41 E-value=0.00024 Score=76.65 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||++++....-......+ .+..+.....+.. .+....++|.||||+.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~ 61 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIA-----------------TVGIDFRNKVVTV---DGVKVKLQIWDTAGQE 61 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCC-----------------cccceeEEEEEEE---CCEEEEEEEEeCCCcH
Q ss_pred ccc--ccccccccceEEEEecCCC
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~ 503 (1291)
.+. ....+..+|++|+|+|+..
T Consensus 62 ~~~~~~~~~~~~ad~~i~v~D~~~ 85 (191)
T cd04112 62 RFRSVTHAYYRDAHALLLLYDITN 85 (191)
T ss_pred HHHHhhHHHccCCCEEEEEEECCC
No 432
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.39 E-value=0.00025 Score=74.35 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhc--CCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT--HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~--~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
+|+++|..++|||||+++|+... ....... |++.....+.... ....+.+.||||
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~------------------~~~~~~~~~~~~~-----~~~~~~l~Dt~g 59 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV------------------GIDFKVKTVFRND-----KRVKLQIWDTAG 59 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce------------------eeEEEEEEEEECC-----EEEEEEEEECCC
Q ss_pred ccccc--ccccccccceEEEEecCCC
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~ 503 (1291)
+..+. .......+|++++|+|...
T Consensus 60 ~~~~~~~~~~~~~~~~~~l~v~d~~~ 85 (165)
T cd01865 60 QERYRTITTAYYRGAMGFILMYDITN 85 (165)
T ss_pred hHHHHHHHHHHccCCcEEEEEEECCC
No 433
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.39 E-value=0.00054 Score=73.84 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=50.9
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+++|..++|||||+.+++...-... -..+..+.. ...+. . .+....++|.||||.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~------~~~t~~~~~-----------~~~i~--~---~~~~~~l~i~Dt~G~ 58 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV------YEPTVFENY-----------VHDIF--V---DGLHIELSLWDTAGQ 58 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc------cCCcceeee-----------EEEEE--E---CCEEEEEEEEECCCC
Confidence 4899999999999999999985431100 000110100 00011 1 124578999999999
Q ss_pred cccccccc--ccccceEEEEecCCCc
Q psy15088 481 PVTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
..+..++. ...+|++|+|+|...-
T Consensus 59 ~~~~~l~~~~~~~a~~~ilv~dv~~~ 84 (189)
T cd04134 59 EEFDRLRSLSYADTDVIMLCFSVDSP 84 (189)
T ss_pred hhccccccccccCCCEEEEEEECCCH
Confidence 76554433 3467899999887664
No 434
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00022 Score=83.61 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=76.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
-+|++|+++.|||||+.+|+...-.- .-.+..--||+-+ ++.++++++.|| -.
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~tk~---------------ti~~i~GPiTvvs-----------gK~RRiTflEcp-~D 123 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFTKQ---------------TIDEIRGPITVVS-----------GKTRRITFLECP-SD 123 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHHh---------------hhhccCCceEEee-----------cceeEEEEEeCh-HH
Confidence 57899999999999999998764211 1112222234332 388999999999 33
Q ss_pred cccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhh
Q psy15088 482 VTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFV 529 (1291)
Q Consensus 482 ~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fi 529 (1291)
...++..+.-||.++++||+.-||+..|..+++.+...|.|++....-
T Consensus 124 l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~T 171 (1077)
T COG5192 124 LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVT 171 (1077)
T ss_pred HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEe
Confidence 344666777789999999999999999999999999999999864433
No 435
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.39 E-value=0.00034 Score=72.75 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=49.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc--hhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM--LNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~--~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.+.||||+..+.......++.+|++|+|+|+.+.-. .....+.+.++. .++|+++|+||+|...
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 478899999998887777778999999999999987531 111222222221 5789999999999853
No 436
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.36 E-value=0.00019 Score=73.20 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=46.2
Q ss_pred EEecCCCcc----ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 218 NKCLPPGHV----NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 218 ~liDtpG~~----~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
.++||||.. .+...+..+++.||++|+|+|+.++.+.++..+... .++|+++|+||+|+.
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 468999973 334445567899999999999999887777554433 356999999999985
No 437
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.36 E-value=0.00027 Score=74.13 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHH-H---HHHHHcCCcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERL-L---KHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~---~~l~~~~~~~ilvvNKiD~~ 280 (1291)
.+.++||||+..|.......++.+|++|+|+|...+...+.... + +.+...++|+++|+||+|..
T Consensus 57 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 57 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 57789999999998888899999999999999987643322222 2 23333478899999999985
No 438
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.36 E-value=0.00034 Score=73.86 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=49.0
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC--chhHHHHHHHHHH---cCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV--MLNTERLLKHAVQ---EKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~--~~~~~~~~~~l~~---~~~~~ilvvNKiD~~ 280 (1291)
+.+|.+.||||+..|.......++.||++|||+|+.+.- ......+.+.+.. .++|++||.||+|..
T Consensus 52 ~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 347899999999888776677889999999999988732 2122222223322 368999999999975
No 439
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.35 E-value=0.0012 Score=69.78 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=50.5
Q ss_pred ceeEEecCCCccccHHH-HHHHhhhcCcEEEEEECCCCCchhHHHHHH-HHHH----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDE-VTAAMRLCDGVVLFVDAAEGVMLNTERLLK-HAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~-~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~-~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
..++++||||+.+|... ....++.+|++++|+|+...-..++..-|. .+++ .++|+++|.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 47889999999888644 455678999999999998766555554432 3333 3589999999999863
No 440
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.35 E-value=0.00025 Score=76.21 Aligned_cols=68 Identities=21% Similarity=0.142 Sum_probs=49.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch-hHHHHH-HHHH---HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML-NTERLL-KHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~-~~~~~~-~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+..+.......++.+|++++|+|+.+.-.- .....+ ..++ ..++|+++|+||+|+..
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 44788999999998877777888999999999999764211 112222 2222 24689999999999853
No 441
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.33 E-value=0.00032 Score=72.99 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=50.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc--hhHHHHHHHHH---HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM--LNTERLLKHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~--~~~~~~~~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++......+++.+|++++|+|....-+ ........+.+ ..++|+++|+||+|...
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 368899999999999999999999999999999875321 11111222222 25899999999999864
No 442
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.32 E-value=0.00041 Score=75.42 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=51.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|..++|||||+++|+...-. .... ...|+.... ..+.+ .+....+.|.||||
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~---------------~t~~~~~~~--~~~~~---~~~~~~l~l~D~~G 64 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYI---------------TTIGVDFKI--RTVEI---NGERVKLQIWDTAG 64 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcC---------------ccccceeEE--EEEEE---CCEEEEEEEEeCCC
Confidence 458999999999999999999854210 0000 000211111 11222 12456789999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 65 ~~~~~~~~~~~~~~a~~iilv~D~~~~ 91 (199)
T cd04110 65 QERFRTITSTYYRGTHGVIVVYDVTNG 91 (199)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCCH
Confidence 9654422 233467889999998654
No 443
>PRK11058 GTPase HflX; Provisional
Probab=97.32 E-value=0.00052 Score=83.06 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=53.7
Q ss_pred cccccCCCceeeecCceeEEecCCCcccc--------HHHHHHHhhhcCcEEEEEECCCCCchhHH----HHHHHHHHcC
Q psy15088 200 IYCSNKSHSWEIVCTRNNNKCLPPGHVNF--------SDEVTAAMRLCDGVVLFVDAAEGVMLNTE----RLLKHAVQEK 267 (1291)
Q Consensus 200 ~~~~~~~~~~~ii~~~~~~liDtpG~~~~--------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~----~~~~~l~~~~ 267 (1291)
.|++.....+.+.++..+.++||||+... ...+...++.||++|+|+|+.+....... .++..+...+
T Consensus 230 tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~ 309 (426)
T PRK11058 230 ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE 309 (426)
T ss_pred CCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC
Confidence 34444333444432247899999998432 12345667899999999999886544432 3344444457
Q ss_pred CcEEEEEEccCcc
Q psy15088 268 MAITLCVNKIDRL 280 (1291)
Q Consensus 268 ~~~ilvvNKiD~~ 280 (1291)
+|+++|+||+|..
T Consensus 310 ~pvIiV~NKiDL~ 322 (426)
T PRK11058 310 IPTLLVMNKIDML 322 (426)
T ss_pred CCEEEEEEcccCC
Confidence 9999999999985
No 444
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.32 E-value=0.00037 Score=72.55 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=50.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHHH--cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
.+++++||||+.+|.......++.+|++++|+|+.+.-..+...-| ..+++ .++|+++|+||+|...
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 3789999999999988888899999999999998764333222222 12222 3789999999999864
No 445
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.31 E-value=0.00036 Score=73.66 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=49.0
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC--CchhHHHHHHHHHH---cCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG--VMLNTERLLKHAVQ---EKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g--~~~~~~~~~~~l~~---~~~~~ilvvNKiD~~ 280 (1291)
+.++.++||||+..+.......++.+|+++||+|+.+. +......+...++. .++|+++|.||+|+.
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 34789999999988887777889999999999998763 22222222223322 247899999999985
No 446
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.31 E-value=0.00041 Score=71.20 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=51.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHHc---CCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQE---KMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~---~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+..+.......++.+|++++|+|+.+.-.... ...+..+... ++|+++++||+|..
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 49 VKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 478899999999998888999999999999999987332222 2233344443 48999999999985
No 447
>PRK13768 GTPase; Provisional
Probab=97.31 E-value=0.00057 Score=77.21 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=52.1
Q ss_pred ceeEEecCCCccccHH------HHHHHhhh--cCcEEEEEECCCCCchhHHHHHHHHH-----HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSD------EVTAAMRL--CDGVVLFVDAAEGVMLNTERLLKHAV-----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~------~~~~a~~~--~D~~l~vVD~~~g~~~~~~~~~~~l~-----~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||..++.. .....+.. ++++++|+|++.+.++.+.....++. +.++|+++|+||+|...
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3678999999866431 22333333 89999999999999998887776664 67999999999999874
No 448
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.31 E-value=0.00057 Score=73.18 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=48.8
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh--HHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN--TERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~--~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.+.||||+..|......-++.+|++|||+|+.+.-.-. ..++.+.+.. .++|++||.||+|...
T Consensus 60 ~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 347899999999888776677789999999999988632111 1122222221 3689999999999864
No 449
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.31 E-value=0.0004 Score=72.51 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=49.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-----HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-----ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-----~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+.+|.......++.+|++++|+|+...-+-+. ..+.+.....++|+++|.||+|...
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 368899999999998888888999999999999886422111 1122222224689999999999863
No 450
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.31 E-value=0.00022 Score=72.37 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.++|.++|++++|||||+++|.+.. ..-.+.-.+.+.- ++|||||
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~-------------------------~~~~KTq~i~~~~----------~~IDTPG 45 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEE-------------------------IRYKKTQAIEYYD----------NTIDTPG 45 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCC-------------------------CCcCccceeEecc----------cEEECCh
Q ss_pred c-----cccccccccc-ccceEEEEecCCCccc
Q psy15088 480 S-----PVTLLLPDVK-GKNYLMNIFDTPGMWD 506 (1291)
Q Consensus 480 h-----~~~~~l~~~~-~ad~~v~vida~~g~~ 506 (1291)
- .++.+|-... .||+++++.|+....+
T Consensus 46 EyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~ 78 (143)
T PF10662_consen 46 EYIENPRFYHALIVTAQDADVVLLLQDATEPRS 78 (143)
T ss_pred hheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc
No 451
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.30 E-value=0.00063 Score=72.89 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+++|+...-.-. ..+.-............++...+.+.||||+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~---------------------~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE---------------------YVPTVFENYVTNIQGPNGKIIELALWDTAGQ 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC---------------------CCCeeeeeeEEEEEecCCcEEEEEEEECCCc
Q ss_pred cccccccccc--ccceEEEEecCCCc--cchhhHhhHHHHHh--hcCccchh
Q psy15088 481 PVTLLLPDVK--GKNYLMNIFDTPGM--WDIHVRKFSKKAAH--ASAQRSFV 526 (1291)
Q Consensus 481 ~~~~~l~~~~--~ad~~v~vida~~g--~~~qt~~~~~~~~~--~~~~~~fv 526 (1291)
..+..+.... .+|++++|+|+... ++.-...+...... .+.|.++|
T Consensus 60 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 111 (187)
T cd04132 60 EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLV 111 (187)
T ss_pred hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
No 452
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.30 E-value=0.00045 Score=72.07 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++++...-.-..... ........+.+.- ....+.|.||||+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t-----------------~~~~~~~~~~~~~-----~~~~l~i~Dt~G~~ 60 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPT-----------------IEDFYRKEIEVDS-----SPSVLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-----------------hhheEEEEEEECC-----EEEEEEEEECCCcc
Q ss_pred cccccccc--cccceEEEEecCCC
Q psy15088 482 VTLLLPDV--KGKNYLMNIFDTPG 503 (1291)
Q Consensus 482 ~~~~l~~~--~~ad~~v~vida~~ 503 (1291)
.+..+... ..+|++++++|+..
T Consensus 61 ~~~~~~~~~~~~ad~~i~v~d~~~ 84 (163)
T cd04176 61 QFASMRDLYIKNGQGFIVVYSLVN 84 (163)
T ss_pred cccchHHHHHhhCCEEEEEEECCC
No 453
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.29 E-value=0.00036 Score=74.78 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=49.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC--CchhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG--VMLNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g--~~~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+..+.......++.+|++|||+|+.+- +......+.+.++. .++|++||.||.|...
T Consensus 60 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 60 NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 44789999999988887778889999999999998642 22222223333322 3578999999999753
No 454
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.29 E-value=0.00037 Score=70.28 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=55.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-----HHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-----KHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-----~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.++.......++.+|++++|+|+..+....+...+ ......++|+++|+||+|...
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 34789999999998887778899999999999999987666655533 334556899999999999864
No 455
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.28 E-value=0.00036 Score=72.69 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=52.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHH---HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|..++.+.+...-+ ..++ ..++|++++.||+|...
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 3788999999999988888889999999999999986554443222 2222 34789999999999863
No 456
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.28 E-value=0.00062 Score=71.06 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=51.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|............ ...|...... .+.. ..+....+.+.||||+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~--------------~t~~~~~~~~--~~~~--~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYL--------------MTTGCDFVVK--EVPV--DTDNTVELFIFDSAGQE 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCC--------------CceEEEEEEE--EEEe--CCCCEEEEEEEECCCHH
Confidence 7999999999999999999853211100000 0001111111 1111 12356889999999986
Q ss_pred cccc--cccccccceEEEEecCCCc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.. -..+..+|++++|+|+...
T Consensus 64 ~~~~~~~~~~~~~d~ii~v~d~~~~ 88 (164)
T cd04101 64 LYSDMVSNYWESPSVFILVYDVSNK 88 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCH
Confidence 4332 2334578999999998765
No 457
>PTZ00369 Ras-like protein; Provisional
Probab=97.28 E-value=0.00036 Score=75.14 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=49.0
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHH----HHcCCcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHA----VQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l----~~~~~~~ilvvNKiD~~ 280 (1291)
.++++||||+.+|..-....++.+|++|+|+|..+.-+-+.. ..+..+ ...+.|+++|.||+|..
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 688899999999988888889999999999998875331111 112222 22378999999999975
No 458
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.28 E-value=0.00043 Score=72.67 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhc-CCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT-HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~-~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+|+++|+.++|||||+++|.... ........ |.+.....+.+.- ....+.+.||||+
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~-----~~~~l~i~Dt~G~ 61 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI-----------------GVEFGTRIIEVNG-----QKIKLQIWDTAGQ 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCccc-----------------ceeEEEEEEEECC-----EEEEEEEEECCCc
Q ss_pred cccc--ccccccccceEEEEecCCC
Q psy15088 481 PVTL--LLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~~--~l~~~~~ad~~v~vida~~ 503 (1291)
..+. .......+|++|+|+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~ilv~d~~~ 86 (166)
T cd04122 62 ERFRAVTRSYYRGAAGALMVYDITR 86 (166)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCC
No 459
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.28 E-value=0.0014 Score=60.55 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=51.2
Q ss_pred CeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEE
Q psy15088 792 RLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLI 871 (1291)
Q Consensus 792 pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I 871 (1291)
|+.+.|..++... + .+..|||.+|++++||+|++.+. ....+|+++.. ...++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g-~vv~G~v~~G~i~~G~~v~i~P~---------~~~~~V~si~~----~~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--G-TVVLGKVESGTIKKGDKLLVMPN---------KTQVEVLSIYN----EDVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--C-EEEEEEEeeeEEecCCEEEEeCC---------CcEEEEEEEEE----CCEECCEECCCCEEEE
Confidence 5677788777653 3 48999999999999999999863 24677888763 2468999999999988
No 460
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.27 E-value=0.00074 Score=71.77 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC-------CCC
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK-------GKN 469 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~-------~~~ 469 (1291)
++...+|+++|..++|||||++++.... ......+ .++.+.....+.+.... +..
T Consensus 1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (180)
T cd04127 1 YDYLIKFLALGDSGVGKTSFLYQYTDNK-FNPKFIT-----------------TVGIDFREKRVVYNSSGPGGTLGRGQR 62 (180)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCC-CCccCCC-----------------ccceEEEEEEEEEcCccccccccCCCE
Q ss_pred eEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhh-----cCccchh
Q psy15088 470 YLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHA-----SAQRSFV 526 (1291)
Q Consensus 470 ~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~-----~~~~~fv 526 (1291)
..+.|.||||+..+. .-.....+|++++|+|+...-+-+..+-|...... +.|.++|
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv 126 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLC 126 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
No 461
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.26 E-value=0.00062 Score=74.21 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=46.4
Q ss_pred eeEEecCCCcccc--------HHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNF--------SDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~--------~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+. ...+...+..+|++++|+|+..+...... .+.++++. .++|+++|+||+|...
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 6889999998431 11233456789999999999987655443 23334433 3689999999999864
No 462
>PRK04213 GTP-binding protein; Provisional
Probab=97.26 E-value=0.00054 Score=74.42 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=48.7
Q ss_pred eeEEecCCCccc-----------cHHH----HHHHhhhcCcEEEEEECCC-----------CCchhHHHHHHHHHHcCCc
Q psy15088 216 NNNKCLPPGHVN-----------FSDE----VTAAMRLCDGVVLFVDAAE-----------GVMLNTERLLKHAVQEKMA 269 (1291)
Q Consensus 216 ~~~liDtpG~~~-----------~~~~----~~~a~~~~D~~l~vVD~~~-----------g~~~~~~~~~~~l~~~~~~ 269 (1291)
.++++||||+.. |... ...++..+|++++|+|+.. |..+++.++++.+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 578899999632 2111 1225567899999999964 2345677888888888999
Q ss_pred EEEEEEccCccc
Q psy15088 270 ITLCVNKIDRLM 281 (1291)
Q Consensus 270 ~ilvvNKiD~~~ 281 (1291)
+++|+||+|...
T Consensus 133 ~iiv~NK~Dl~~ 144 (201)
T PRK04213 133 PIVAVNKMDKIK 144 (201)
T ss_pred eEEEEECccccC
Confidence 999999999853
No 463
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.24 E-value=0.00039 Score=74.94 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|.+++|||||+++|....-....... ........+.+.- ....+.|+||||+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t-----------------~~~~~~~~~~~~~-----~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT-----------------IEDSYRKQVVVDG-----QPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc-----------------hHhhEEEEEEECC-----EEEEEEEEECCCch
Q ss_pred ccccccc--ccccceEEEEecCCC
Q psy15088 482 VTLLLPD--VKGKNYLMNIFDTPG 503 (1291)
Q Consensus 482 ~~~~l~~--~~~ad~~v~vida~~ 503 (1291)
.+..++. ...+|++++|+|...
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~ 82 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITS 82 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCC
No 464
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.24 E-value=0.00053 Score=67.58 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCC---cccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHP---GYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~---i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+|.++|..++|||||+++|+..... ...... +.++......... ....+.+.|++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~~~d~~ 58 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETS-----------------EITIGVDVIVVDG-----DRQSLQFWDFG 58 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SST-----------------TSCEEEEEEEETT-----EEEEEEEEEES
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccC-----------------CCcEEEEEEEecC-----CceEEEEEecC
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhh----HhhHHHHHh--hcCccchh
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHV----RKFSKKAAH--ASAQRSFV 526 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt----~~~~~~~~~--~~~~~~fv 526 (1291)
|...+. .-..+..+|++++|+|+...-+-+. .++...... ..+|.++|
T Consensus 59 g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv 114 (119)
T PF08477_consen 59 GQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILV 114 (119)
T ss_dssp SSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred ccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEE
No 465
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.24 E-value=0.00069 Score=71.06 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=52.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH------cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ------EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~------~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|..-...+++.+|++|+|.|....-+... ...+..+++ .++|+++|.||+|...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred EEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 378899999999998777788999999999999887554332 333444443 4689999999999853
No 466
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.23 E-value=0.00086 Score=74.14 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=53.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+++++...-... + ...-|.+.... ++.. ..+...+.+.||||.
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~----------~------~~tig~~~~~~--~~~~---~~~~~~l~i~Dt~G~ 72 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK----------Y------EPTIGVEVHPL--DFFT---NCGKIRFYCWDTAGQ 72 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCc----------c------CCccceeEEEE--EEEE---CCeEEEEEEEECCCc
Confidence 4899999999999999999875421100 0 00113332222 2211 124678999999999
Q ss_pred cccccccc--ccccceEEEEecCCCc
Q psy15088 481 PVTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
..+..+.. ...+|++|+|+|....
T Consensus 73 ~~~~~~~~~~~~~~~~~ilvfD~~~~ 98 (219)
T PLN03071 73 EKFGGLRDGYYIHGQCAIIMFDVTAR 98 (219)
T ss_pred hhhhhhhHHHcccccEEEEEEeCCCH
Confidence 76654433 3577899999998876
No 467
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.22 E-value=0.00049 Score=73.71 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=50.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+.++....-. .. +...|.... .+.. .+..+.+.||||+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~--~~---------------~~T~~~~~~----~~~~-----~~~~~~l~D~~G~ 71 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV--TT---------------IPTIGFNVE----TVEY-----KNLKFTMWDVGGQ 71 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cc---------------CCccccceE----EEEE-----CCEEEEEEECCCC
Confidence 47999999999999999999532111 00 001122211 1222 5789999999999
Q ss_pred cccccc--ccccccceEEEEecCCC
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~ 503 (1291)
..+..+ .-...+|++|+|+|+..
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~ 96 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSND 96 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 654422 23457799999999864
No 468
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.22 E-value=0.00091 Score=70.42 Aligned_cols=66 Identities=24% Similarity=0.190 Sum_probs=49.7
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHH-HHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERL-LKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.++++||||+..|.......++.+|++|||+|+...-.-++... +..+++ .++|+++|.||+|...
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 68899999999888878888999999999999886433332221 222333 3688999999999863
No 469
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.22 E-value=0.00062 Score=74.08 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhc-CCcccCCccccccccccccccccccCceeeeccceec-ccccCCCCeEEEEEeCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT-HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLL-LPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~-~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~~~~~~~~liDTpG 479 (1291)
+|+++|.+++|||||+++|+... .....+.. |.......+.+. . ....+.+.||||
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~-----------------~~d~~~~~v~~~~~-----~~~~l~l~Dt~G 59 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI-----------------GVDFALKVIEWDPN-----TVVRLQLWDIAG 59 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-----------------eEEEEEEEEEECCC-----CEEEEEEEECCC
Q ss_pred cccccccccc--cccceEEEEecCCC
Q psy15088 480 SPVTLLLPDV--KGKNYLMNIFDTPG 503 (1291)
Q Consensus 480 h~~~~~l~~~--~~ad~~v~vida~~ 503 (1291)
+..+..+... ..+|++|+|+|+..
T Consensus 60 ~~~~~~~~~~~~~~a~~~ilv~D~t~ 85 (201)
T cd04107 60 QERFGGMTRVYYRGAVGAIIVFDVTR 85 (201)
T ss_pred chhhhhhHHHHhCCCCEEEEEEECCC
No 470
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.22 E-value=0.00053 Score=73.66 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=51.2
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|+...-... . ...-|.+.....+.+ .++...+.+.||||+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~-~---------------~~t~~~~~~~~~~~~-----~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSES-T---------------KSTIGVDFKIKTVYI-----ENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-C---------------CCceeeEEEEEEEEE-----CCEEEEEEEEECCCcH
Confidence 799999999999999999985431100 0 001122222222221 1245678999999986
Q ss_pred ccc--ccccccccceEEEEecCCCc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
.+. ....+..+|++++|+|....
T Consensus 61 ~~~~~~~~~~~~~d~iilv~d~~~~ 85 (188)
T cd04125 61 RFRSLNNSYYRGAHGYLLVYDVTDQ 85 (188)
T ss_pred HHHhhHHHHccCCCEEEEEEECcCH
Confidence 543 22344578999999998653
No 471
>PTZ00099 rab6; Provisional
Probab=97.22 E-value=0.00063 Score=72.53 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=49.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHH--cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQ--EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~--~~~~~ilvvNKiD~~ 280 (1291)
.++.+.||||+..|..-....++.||++|||+|....-+-+. ..+....+. .+.|++||.||+|+.
T Consensus 29 v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 378899999999988877888999999999999887433222 222222232 356789999999985
No 472
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.22 E-value=0.0013 Score=68.85 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=49.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+..|.......++.+|++|+|+|+.+.-.-.. ...+..+++ .++|++++.||+|...
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 368899999999998888888999999999999976321111 112222222 3689999999999753
No 473
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.21 E-value=0.00056 Score=71.49 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=49.6
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+.+|.... ... +.+ .-|..+. .+.+ ....+.+.||||+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~--~~~------------~~p---t~g~~~~----~~~~-----~~~~~~l~D~~G~~ 55 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE--IVT------------TIP---TIGFNVE----TVEY-----KNISFTVWDVGGQD 55 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--Ccc------------cCC---CCCcceE----EEEE-----CCEEEEEEECCCCH
Confidence 68999999999999999986331 110 000 0122111 1222 57889999999996
Q ss_pred ccccc--ccccccceEEEEecCCC
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~ 503 (1291)
.+..+ .....+|++|+|+|+..
T Consensus 56 ~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 56 KIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCC
Confidence 44322 23467899999999875
No 474
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.20 E-value=0.00064 Score=71.05 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=48.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC--CchhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG--VMLNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g--~~~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.+.||||+..|.......++.||++|||+|+.+- +....+.+.+.++. .+.|++|+.||+|+..
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 4789999999988877777789999999999998753 22222222222222 3589999999999853
No 475
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.19 E-value=0.0007 Score=74.79 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=50.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|..++|||||+++++...-. .. -.|+........+ ..+.+.|.||||+.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~-------------------~~Tig~~~~~~~~-----~~~~l~iwDt~G~e 55 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DT-------------------VSTVGGAFYLKQW-----GPYNISIWDTAGRE 55 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CC-------------------CCccceEEEEEEe-----eEEEEEEEeCCCcc
Confidence 7899999999999999999854310 00 0111111111122 46789999999996
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. -...+|++|+|+|+...
T Consensus 56 ~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 56 QFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred cchhhHHHHhccCCEEEEEEECCCH
Confidence 544322 24578999999998865
No 476
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.19 E-value=0.00055 Score=72.02 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=50.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-----HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-----ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-----~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|+++||+|....-.-+. ..+.+.....++|++++.||+|...
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 378899999999999888888999999999999876432222 2222222234789999999999853
No 477
>PLN03108 Rab family protein; Provisional
Probab=97.19 E-value=0.00069 Score=74.35 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=52.0
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+|+|..++|||||+++|+...-.... .. .-|.+.....+ .+ .+....+++.|||
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~---------------ti~~~~~~~~i--~~---~~~~i~l~l~Dt~ 63 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DL---------------TIGVEFGARMI--TI---DNKPIKLQIWDTA 63 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CC---------------CccceEEEEEE--EE---CCEEEEEEEEeCC
Confidence 3458999999999999999999865321100 00 00221111111 12 1245678899999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++|+|+|+...
T Consensus 64 G~~~~~~~~~~~~~~ad~~vlv~D~~~~ 91 (210)
T PLN03108 64 GQESFRSITRSYYRGAAGALLVYDITRR 91 (210)
T ss_pred CcHHHHHHHHHHhccCCEEEEEEECCcH
Confidence 99654432 233467899999998653
No 478
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.0012 Score=74.24 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=61.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
.++++|.|++|||||+++|.+..-.. -|+- =+|....+.-+.| ++-.|.|+|+||..
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~sev------------a~y~------FTTl~~VPG~l~Y-----~ga~IQild~Pgii 121 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEV------------ADYP------FTTLEPVPGMLEY-----KGAQIQLLDLPGII 121 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccc------------cccC------ceecccccceEee-----cCceEEEEcCcccc
Confidence 89999999999999999997553211 0111 2566677777777 89999999999983
Q ss_pred ----cc-----cccccccccceEEEEecCCCcc
Q psy15088 482 ----VT-----LLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 482 ----~~-----~~l~~~~~ad~~v~vida~~g~ 505 (1291)
.- ..+.++..||.+++|+|+..+-
T Consensus 122 ~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 122 EGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred cCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 11 2566777899999999998774
No 479
>PLN03118 Rab family protein; Provisional
Probab=97.18 E-value=0.0011 Score=72.88 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=50.4
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHH-HHH----HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLK-HAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~-~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
..+.|+||||+..|.......++.+|++|||+|+...-..+... .|. .+. ..+.|+++|+||+|+..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 37889999999999888888899999999999998754333332 222 222 13578999999999863
No 480
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.18 E-value=0.0014 Score=80.08 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=46.5
Q ss_pred CceeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCC---CCchh-H-----HHHHHHH----------HHcC
Q psy15088 214 TRNNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAE---GVMLN-T-----ERLLKHA----------VQEK 267 (1291)
Q Consensus 214 ~~~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~---g~~~~-~-----~~~~~~l----------~~~~ 267 (1291)
+.+|.++||||+.. ...+....++.||++|+|||+.. +-.+. + .++..+. ...+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 55899999999753 22345677889999999999864 21111 1 1233333 2347
Q ss_pred CcEEEEEEccCccc
Q psy15088 268 MAITLCVNKIDRLM 281 (1291)
Q Consensus 268 ~~~ilvvNKiD~~~ 281 (1291)
+|+|+|+||+|.+.
T Consensus 285 kP~IVVlNKiDL~d 298 (500)
T PRK12296 285 RPRLVVLNKIDVPD 298 (500)
T ss_pred CCEEEEEECccchh
Confidence 89999999999863
No 481
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.18 E-value=0.0008 Score=69.14 Aligned_cols=67 Identities=19% Similarity=0.098 Sum_probs=49.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc-hhHHHHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM-LNTERLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~-~~~~~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++++|+|+...-. .+....+..+. ..++|+++|+||+|...
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 368899999999998888899999999999999876321 12222222222 24789999999999753
No 482
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.17 E-value=0.0011 Score=70.47 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=48.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc-hhHHHHHHHH-HH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM-LNTERLLKHA-VQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~-~~~~~~~~~l-~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.+.||||+..|......-++.||++|||+|+.+--. ....+.+..+ +. .++|++||.||+|+..
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 478899999998887766677899999999999875311 1122233333 22 3579999999999853
No 483
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.17 E-value=0.00064 Score=70.90 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=48.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH--------cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ--------EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~--------~~~~~ilvvNKiD~~ 280 (1291)
..++++||||+..|.......++.+|++|+|+|....-.-+... .+..+.+ .+.|+++|+||+|..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 47899999999888877777889999999999988643222111 1122221 357899999999986
No 484
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.17 E-value=0.00081 Score=70.74 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCc-ccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPG-YRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i-~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+|+++|.+++|||||+++++...-.- ..+.. |.......+.+.- +...+.|.||||+
T Consensus 7 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~l~i~D~~G~ 64 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-----------------GVEFLNKDLEVDG-----HFVTLQIWDTAGQ 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcCcCCce-----------------eeEEEEEEEEECC-----eEEEEEEEeCCCh
Q ss_pred cccccccccc--ccceEEEEecCCCccchhhHhhHHH
Q psy15088 481 PVTLLLPDVK--GKNYLMNIFDTPGMWDIHVRKFSKK 515 (1291)
Q Consensus 481 ~~~~~l~~~~--~ad~~v~vida~~g~~~qt~~~~~~ 515 (1291)
..+..+...- .+|++++++|....-+-+...-|..
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 101 (170)
T cd04116 65 ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKK 101 (170)
T ss_pred HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHH
No 485
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.17 E-value=0.00062 Score=72.17 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=51.1
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHH----HcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
.++++||||..+|..-....++.+|++|+|+|..+.-+.++.. .+..++ ..++|+++|.||+|...
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 6889999999998877788899999999999998765554433 122222 24689999999999753
No 486
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.16 E-value=0.0024 Score=69.49 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=49.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
.+.|+||||+..|.......++.+|++|+|+|+.+.-+-+.. ..+..++. ...|+++|+||+|+..
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred EEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 678999999998888788889999999999999764332221 22233333 2578999999999864
No 487
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.16 E-value=0.00095 Score=73.90 Aligned_cols=83 Identities=8% Similarity=0.109 Sum_probs=49.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++++...-.. ... +..-|.......+.+ .+....++++||||..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~-~~~--------------~~t~~~~~~~~~i~~-----~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDD-HAY--------------DASGDDDTYERTVSV-----DGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCc-cCc--------------CCCccccceEEEEEE-----CCEEEEEEEEeCCCcc
Confidence 69999999999999999997432100 000 000010000111111 1256789999999997
Q ss_pred ccccccccc-ccceEEEEecCCCc
Q psy15088 482 VTLLLPDVK-GKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~~~~-~ad~~v~vida~~g 504 (1291)
....-.... .+|++++|+|+...
T Consensus 62 ~~~~~~~~~~~ad~iilV~d~td~ 85 (221)
T cd04148 62 MWTEDSCMQYQGDAFVVVYSVTDR 85 (221)
T ss_pred hHHHhHHhhcCCCEEEEEEECCCH
Confidence 222112223 67999999998865
No 488
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.16 E-value=0.00075 Score=70.89 Aligned_cols=66 Identities=21% Similarity=0.116 Sum_probs=49.4
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-----HHHH---HcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-----KHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-----~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
.++++||||+..|.......++.+|++|+|+|+....+.+...-| ..+. ..++|+++|+||+|...
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 678999999998888788889999999999999875432222211 1111 12789999999999863
No 489
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.15 E-value=0.00077 Score=69.83 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=49.0
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-----HHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-----RLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-----~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+..|..-....++.+|++++|+|....-..+.. .+.+.....++|+++|.||+|...
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 578899999999988788889999999999998764322221 122222234789999999999864
No 490
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.15 E-value=0.0006 Score=72.53 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=50.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHH-HHHH----HHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERL-LKHA----VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~~~l----~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......+..+|++++|+|...+-..+...- ++.+ ...++|+++|+||+|...
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 467899999999988777788999999999999887543332221 1222 234679999999999863
No 491
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.14 E-value=0.0018 Score=70.26 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=53.3
Q ss_pred CceeEEecCCCccccH-------HHHH----HHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc-C----CcEEEEEEcc
Q psy15088 214 TRNNNKCLPPGHVNFS-------DEVT----AAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE-K----MAITLCVNKI 277 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~-------~~~~----~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~-~----~~~ilvvNKi 277 (1291)
++++++|||||+.+.. .++. .+....|++|||+|+.. .+..++.+++.+++. | .+++++++|.
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 7799999999997652 2222 23456799999999988 999999999998874 3 6789999999
Q ss_pred Cccc
Q psy15088 278 DRLM 281 (1291)
Q Consensus 278 D~~~ 281 (1291)
|...
T Consensus 127 d~l~ 130 (196)
T cd01852 127 DDLE 130 (196)
T ss_pred cccC
Confidence 9764
No 492
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.14 E-value=0.00039 Score=73.43 Aligned_cols=66 Identities=8% Similarity=0.041 Sum_probs=49.6
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|..+.-.-+.. .....+++ .++|+++|.||+|+..
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 578999999998877677788899999999998875433322 22333333 5789999999999753
No 493
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.13 E-value=0.00046 Score=73.13 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=46.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+.|.|+|..|+|||+|...|.+....-+ -+|+... +.+.. ...++..+.+||+|||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T---------------------~tS~e~n-~~~~~--~~~~~~~~~lvD~PGH 59 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPT---------------------VTSMENN-IAYNV--NNSKGKKLRLVDIPGH 59 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B------------------------SSEE-EECCG--SSTCGTCECEEEETT-
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCe---------------------eccccCC-ceEEe--ecCCCCEEEEEECCCc
Confidence 4789999999999999999987632111 1112111 11111 1225678999999999
Q ss_pred cccc--ccc---cccccceEEEEecCCC
Q psy15088 481 PVTL--LLP---DVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~~--~l~---~~~~ad~~v~vida~~ 503 (1291)
.-.+ .+. -...+.++|+|||+..
T Consensus 60 ~rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 60 PRLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred HHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 6433 112 2445678999999874
No 494
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.13 E-value=0.002 Score=67.22 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=49.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.+.||||+..+..-....++.+|++++|+|....-.... +..+..+++. ++|+++|+||+|...
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 378899999998887777888999999999999876432221 2222333333 589999999999853
No 495
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.13 E-value=0.0008 Score=73.94 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=50.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++|+...-.... . ..++++.....+.+. .+....+++.||||+.
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~-----------------~ti~~d~~~~~i~~~--~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVS-D-----------------PTVGVDFFSRLIEIE--PGVRIKLQLWDTAGQE 63 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-C-----------------ceeceEEEEEEEEEC--CCCEEEEEEEeCCcch
Confidence 8999999999999999999864311110 0 011111111111111 1245789999999996
Q ss_pred ccccc--ccccccceEEEEecCCC
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~ 503 (1291)
.+..+ .....+|++|+|+|+..
T Consensus 64 ~~~~~~~~~~~~~d~iilv~D~~~ 87 (211)
T cd04111 64 RFRSITRSYYRNSVGVLLVFDITN 87 (211)
T ss_pred hHHHHHHHHhcCCcEEEEEEECCC
Confidence 54422 23456789999999765
No 496
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.12 E-value=0.001 Score=70.51 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=51.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+.+++...-.. . ...+..+.. . ..+.. .+....++|+||||..
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~~--~----~~~t~~~~~----------~---~~~~~---~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFPD--Y----HDPTIEDAY----------K---QQARI---DNEPALLDILDTAGQA 61 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--C----cCCcccceE----------E---EEEEE---CCEEEEEEEEeCCCch
Confidence 79999999999999999998542110 0 000110100 0 01111 2245788999999986
Q ss_pred cccccc--cccccceEEEEecCCCccc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGMWD 506 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g~~ 506 (1291)
.+..+. ....+|++|+|+|....-+
T Consensus 62 ~~~~l~~~~~~~~d~~ilv~d~~~~~S 88 (172)
T cd04141 62 EFTAMRDQYMRCGEGFIICYSVTDRHS 88 (172)
T ss_pred hhHHHhHHHhhcCCEEEEEEECCchhH
Confidence 554332 2446789999999877643
No 497
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.08 E-value=0.0015 Score=68.66 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=49.6
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
++.+.||||+..|.......++.||++|||+|+.++-+-+. +..+..+++ .+.|+++|.||+|+..
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 68899999999988877888999999999999977543222 122222222 3679999999999864
No 498
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.08 E-value=0.00079 Score=72.08 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=51.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+.+|.... ..... ..-|.++. .+.+ ++..+++.||||+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~--~~~~~---------------pt~g~~~~----~~~~-----~~~~~~i~D~~Gq 71 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGE--IVTTI---------------PTIGFNVE----TVEY-----KNISFTVWDVGGQ 71 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCC--Ccccc---------------CCcceeEE----EEEE-----CCEEEEEEECCCC
Confidence 489999999999999999986321 11000 01122221 2233 6789999999999
Q ss_pred cccccc--ccccccceEEEEecCCCc
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
..++.+ .-...+|++|+|+|+...
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~ 97 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcH
Confidence 655432 124567999999998753
No 499
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.08 E-value=0.001 Score=69.67 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=48.0
Q ss_pred eeEEecCCCccc-cHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVN-FSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~-~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.. +.......++.+|++|+|+|+..+-.-+... .+..+.+ .++|+++|.||+|...
T Consensus 48 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 48 SLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred EEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 578999999985 4556777899999999999998764333221 2223332 3789999999999753
No 500
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.08 E-value=0.00085 Score=71.00 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=0.0
Q ss_pred eEEEEcccCCChhHHHHHHHhh-cCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQ-THPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~-~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+|+++|..++|||||+++++.. ...-..+.- |.......+.+.- ....+++.||||.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~-----------------~~~~~~~~~~~~~-----~~~~l~i~Dt~G~ 59 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATI-----------------GVDFEMERFEILG-----VPFSLQLWDTAGQ 59 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----------------eeEEEEEEEEECC-----EEEEEEEEeCCCh
Q ss_pred cccccccccc--ccceEEEEecCCC
Q psy15088 481 PVTLLLPDVK--GKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~~~~l~~~~--~ad~~v~vida~~ 503 (1291)
..+..+.... .+|++++|+|+..
T Consensus 60 ~~~~~~~~~~~~~ad~~ilv~d~~~ 84 (170)
T cd04108 60 ERFKCIASTYYRGAQAIIIVFDLTD 84 (170)
T ss_pred HHHHhhHHHHhcCCCEEEEEEECcC
Done!