Query psy15088
Match_columns 1291
No_of_seqs 645 out of 4846
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:14:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 4E-118 1E-122 1151.9 67.2 733 384-1274 3-841 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 7E-107 2E-111 1033.8 46.2 671 398-1230 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 2.4E-96 8E-101 931.9 58.8 669 396-1232 6-696 (704)
4 3j25_A Tetracycline resistance 100.0 4E-100 1E-104 959.0 12.9 630 399-1256 1-637 (638)
5 2xex_A Elongation factor G; GT 100.0 2.3E-95 8E-100 922.5 52.4 662 397-1231 7-683 (693)
6 1dar_A EF-G, elongation factor 100.0 5.7E-95 2E-99 918.6 42.0 662 396-1232 8-685 (691)
7 2dy1_A Elongation factor G; tr 100.0 2.2E-86 7.6E-91 837.7 51.0 636 398-1231 7-654 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 3.6E-67 1.2E-71 646.5 24.4 458 394-991 25-503 (548)
9 2ywe_A GTP-binding protein LEP 100.0 8.3E-62 2.8E-66 599.3 36.8 499 397-1258 3-522 (600)
10 3cb4_D GTP-binding protein LEP 100.0 3.5E-60 1.2E-64 586.4 35.2 495 398-1258 2-517 (599)
11 2h5e_A Peptide chain release f 100.0 4.4E-52 1.5E-56 510.2 31.7 452 398-988 11-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 4.4E-51 1.5E-55 500.7 29.4 451 398-987 11-475 (528)
13 1n0u_A EF-2, elongation factor 100.0 6.7E-36 2.3E-40 385.8 19.6 193 1-197 504-696 (842)
14 3e3x_A BIPA; MCSG,PSI2, struct 100.0 2E-32 6.7E-37 308.7 20.1 198 870-1233 2-210 (332)
15 2rdo_7 EF-G, elongation factor 99.9 3.6E-24 1.2E-28 271.6 16.5 150 1-197 431-586 (704)
16 4fn5_A EF-G 1, elongation fact 99.9 2.6E-24 9.1E-29 274.0 11.0 157 1-198 434-593 (709)
17 2xex_A Elongation factor G; GT 99.9 1.1E-23 3.7E-28 267.0 15.4 147 1-197 423-574 (693)
18 2hjg_A GTP-binding protein ENG 99.9 1.4E-23 4.8E-28 253.5 8.8 224 214-530 50-294 (436)
19 1dar_A EF-G, elongation factor 99.9 2.4E-23 8E-28 263.8 8.9 147 1-197 424-575 (691)
20 1d2e_A Elongation factor TU (E 99.9 4E-22 1.4E-26 237.8 19.0 275 401-886 4-288 (397)
21 3j2k_7 ERF3, eukaryotic polype 99.9 5.6E-22 1.9E-26 239.0 19.9 125 400-530 17-163 (439)
22 1g7s_A Translation initiation 99.9 1E-21 3.4E-26 243.6 19.6 337 399-929 4-373 (594)
23 2c78_A Elongation factor TU-A; 99.9 1.2E-21 4.3E-26 234.3 19.1 125 399-530 10-136 (405)
24 4dcu_A GTP-binding protein ENG 99.9 3.7E-22 1.3E-26 242.4 10.2 224 214-530 70-314 (456)
25 3mca_A HBS1, elongation factor 99.9 9.8E-22 3.4E-26 244.6 14.2 128 397-530 174-323 (592)
26 1jny_A EF-1-alpha, elongation 99.9 2.4E-21 8.2E-26 233.7 15.4 126 399-530 5-152 (435)
27 2dy1_A Elongation factor G; tr 99.8 1.7E-21 5.9E-26 246.0 13.8 143 1-197 398-545 (665)
28 2elf_A Protein translation elo 99.8 1.2E-20 4.1E-25 222.0 16.8 91 402-524 23-115 (370)
29 3avx_A Elongation factor TS, e 99.8 1.4E-20 4.9E-25 240.6 18.1 278 398-886 294-579 (1289)
30 1mky_A Probable GTP-binding pr 99.8 6.4E-21 2.2E-25 230.4 13.8 247 196-530 31-300 (439)
31 1f60_A Elongation factor EEF1A 99.8 7.9E-20 2.7E-24 221.5 18.1 126 399-530 6-153 (458)
32 1zun_B Sulfate adenylate trans 99.8 4.7E-20 1.6E-24 222.5 16.0 126 399-530 23-165 (434)
33 1r5b_A Eukaryotic peptide chai 99.8 6.1E-20 2.1E-24 223.0 16.9 127 398-530 41-189 (467)
34 3p26_A Elongation factor 1 alp 99.8 7.2E-20 2.5E-24 223.7 17.6 126 399-530 32-179 (483)
35 1kk1_A EIF2gamma; initiation o 99.8 4E-19 1.4E-23 212.9 21.3 116 399-530 9-145 (410)
36 3izq_1 HBS1P, elongation facto 99.8 2.9E-19 9.9E-24 222.9 19.1 128 397-530 164-313 (611)
37 3j25_A Tetracycline resistance 99.8 1.5E-20 5.2E-25 236.3 3.5 146 1-197 360-508 (638)
38 1s0u_A EIF-2-gamma, translatio 99.8 1.9E-18 6.4E-23 206.8 18.6 115 400-530 8-143 (408)
39 1zo1_I IF2, translation initia 99.8 1.6E-19 5.5E-24 218.4 6.8 107 399-530 3-111 (501)
40 3izy_P Translation initiation 99.7 2E-18 7E-23 210.5 12.3 254 400-888 4-259 (537)
41 1wb1_A Translation elongation 99.7 6.5E-19 2.2E-23 214.5 7.7 113 400-530 19-133 (482)
42 3sjy_A Translation initiation 99.7 2.8E-17 9.4E-22 196.4 21.3 127 400-530 8-137 (403)
43 3vqt_A RF-3, peptide chain rel 99.6 3.5E-16 1.2E-20 192.8 9.2 93 173-281 74-166 (548)
44 3j2k_7 ERF3, eukaryotic polype 99.4 3.6E-13 1.2E-17 162.2 12.5 150 160-347 56-213 (439)
45 1puj_A YLQF, conserved hypothe 99.3 2.3E-12 7.9E-17 145.9 10.7 171 221-481 5-176 (282)
46 1r5b_A Eukaryotic peptide chai 99.3 3.8E-12 1.3E-16 154.5 9.2 144 166-347 88-240 (467)
47 3p26_A Elongation factor 1 alp 99.2 1.9E-11 6.6E-16 149.2 12.6 142 165-347 77-226 (483)
48 1zun_B Sulfate adenylate trans 99.2 1.3E-11 4.5E-16 148.6 9.4 139 168-347 73-212 (434)
49 3sr0_A Adenylate kinase; phosp 99.2 4.4E-12 1.5E-16 136.7 3.0 95 616-710 76-190 (206)
50 1d2e_A Elongation factor TU (E 99.2 3.6E-11 1.2E-15 143.1 10.0 113 174-311 41-154 (397)
51 1f60_A Elongation factor EEF1A 99.2 1.2E-11 4.2E-16 149.7 5.7 138 169-347 55-200 (458)
52 3mca_A HBS1, elongation factor 99.2 3.3E-12 1.1E-16 158.9 0.5 141 166-347 222-371 (592)
53 1jny_A EF-1-alpha, elongation 99.2 2.4E-11 8.3E-16 146.3 7.9 122 168-311 53-182 (435)
54 2ywe_A GTP-binding protein LEP 99.2 4.3E-11 1.5E-15 147.9 9.8 97 174-281 43-139 (600)
55 1wb1_A Translation elongation 99.1 5.7E-11 2E-15 144.6 10.4 127 175-346 49-176 (482)
56 2c78_A Elongation factor TU-A; 99.1 5.1E-11 1.7E-15 142.3 9.7 113 174-311 50-163 (405)
57 3ec1_A YQEH GTPase; atnos1, at 99.1 6.8E-11 2.3E-15 139.1 10.6 166 219-481 53-223 (369)
58 3cb4_D GTP-binding protein LEP 99.1 1.6E-10 5.3E-15 143.3 12.6 97 174-281 41-137 (599)
59 2elf_A Protein translation elo 99.1 1.7E-10 5.7E-15 135.6 11.3 81 182-279 43-125 (370)
60 3umf_A Adenylate kinase; rossm 99.1 1E-11 3.4E-16 134.6 0.6 91 616-710 109-199 (217)
61 3izq_1 HBS1P, elongation facto 99.1 4.2E-11 1.4E-15 149.5 5.6 140 167-347 213-360 (611)
62 3cnl_A YLQF, putative uncharac 99.1 1.2E-10 4.1E-15 130.4 7.9 55 223-281 5-60 (262)
63 3avx_A Elongation factor TS, e 99.1 2E-10 6.7E-15 147.9 10.2 113 174-311 334-447 (1289)
64 3gmt_A Adenylate kinase; ssgci 99.0 2.6E-11 8.8E-16 131.8 -0.5 92 616-710 87-215 (230)
65 3h2y_A GTPase family protein; 99.0 3.4E-10 1.2E-14 133.0 8.4 164 226-481 57-222 (368)
66 3tr5_A RF-3, peptide chain rel 99.0 4.5E-10 1.5E-14 137.7 8.3 87 179-281 62-148 (528)
67 1kk1_A EIF2gamma; initiation o 99.0 7.4E-10 2.5E-14 132.4 9.9 67 215-281 83-151 (410)
68 1wf3_A GTP-binding protein; GT 99.0 7.2E-10 2.5E-14 126.7 9.2 109 398-530 5-125 (301)
69 1g7s_A Translation initiation 99.0 4.7E-10 1.6E-14 139.2 8.3 125 216-347 71-206 (594)
70 2h5e_A Peptide chain release f 99.0 6.3E-10 2.2E-14 136.5 8.6 89 177-281 60-148 (529)
71 3iev_A GTP-binding protein ERA 99.0 1.3E-09 4.3E-14 125.2 10.5 110 397-530 7-130 (308)
72 1ega_A Protein (GTP-binding pr 98.9 1.3E-09 4.5E-14 124.6 8.6 107 399-530 7-124 (301)
73 3e3x_A BIPA; MCSG,PSI2, struct 98.9 1.2E-09 4.1E-14 123.6 7.2 61 1-63 58-119 (332)
74 3sjy_A Translation initiation 98.9 4.1E-09 1.4E-13 125.6 12.0 68 214-281 74-143 (403)
75 2xtp_A GTPase IMAP family memb 98.8 5.7E-09 2E-13 116.6 9.9 105 399-525 21-143 (260)
76 1s0u_A EIF-2-gamma, translatio 98.8 1.6E-09 5.6E-14 129.3 5.4 104 176-281 35-149 (408)
77 3i8s_A Ferrous iron transport 98.8 1.5E-08 5.3E-13 114.2 12.7 103 401-530 4-120 (274)
78 3qq5_A Small GTP-binding prote 98.8 1.1E-09 3.7E-14 130.5 2.6 108 398-530 32-148 (423)
79 1zo1_I IF2, translation initia 98.8 1.9E-09 6.6E-14 130.5 4.1 68 214-281 50-117 (501)
80 3izy_P Translation initiation 98.7 2.1E-09 7.1E-14 131.3 2.9 68 214-281 51-118 (537)
81 1mky_A Probable GTP-binding pr 98.7 1.1E-08 3.7E-13 123.4 8.0 106 401-530 2-118 (439)
82 1t9h_A YLOQ, probable GTPase E 98.7 2.5E-08 8.5E-13 113.6 9.6 46 235-281 83-131 (307)
83 3iby_A Ferrous iron transport 98.7 3.4E-08 1.2E-12 110.1 10.2 145 401-577 2-163 (256)
84 2lkc_A Translation initiation 98.7 5.7E-08 1.9E-12 101.0 10.9 108 398-530 6-115 (178)
85 3k53_A Ferrous iron transport 98.7 2.9E-08 9.9E-13 111.7 8.9 128 400-559 3-142 (271)
86 4dhe_A Probable GTP-binding pr 98.7 2.1E-08 7.2E-13 108.8 7.4 109 399-530 28-152 (223)
87 2hjg_A GTP-binding protein ENG 98.6 1.1E-08 3.9E-13 123.1 4.4 106 401-530 4-119 (436)
88 3lxw_A GTPase IMAP family memb 98.6 3.5E-08 1.2E-12 109.5 7.8 106 401-530 22-147 (247)
89 2dyk_A GTP-binding protein; GT 98.6 5.6E-08 1.9E-12 99.1 7.9 103 401-525 2-113 (161)
90 4dcu_A GTP-binding protein ENG 98.6 1.8E-08 6E-13 122.2 4.4 107 400-530 23-139 (456)
91 2yv5_A YJEQ protein; hydrolase 98.5 1.7E-07 5.9E-12 107.0 10.9 47 235-281 76-124 (302)
92 1u0l_A Probable GTPase ENGC; p 98.5 5.7E-08 1.9E-12 111.0 6.7 64 216-281 64-129 (301)
93 3geh_A MNME, tRNA modification 98.5 7.6E-08 2.6E-12 116.0 7.6 103 402-530 226-338 (462)
94 3a1s_A Iron(II) transport prot 98.5 1.7E-07 5.9E-12 104.6 9.8 128 399-558 4-142 (258)
95 1xzp_A Probable tRNA modificat 98.5 6E-08 2E-12 117.5 6.5 104 401-530 244-358 (482)
96 3gee_A MNME, tRNA modification 98.5 8.6E-08 2.9E-12 116.0 7.0 103 402-530 235-351 (476)
97 4dhe_A Probable GTP-binding pr 98.4 5.2E-07 1.8E-11 97.7 10.3 68 214-281 78-158 (223)
98 2gj8_A MNME, tRNA modification 98.4 2.5E-07 8.4E-12 96.4 7.1 105 402-530 6-123 (172)
99 3def_A T7I23.11 protein; chlor 98.4 4.2E-07 1.4E-11 101.6 9.4 98 399-518 35-144 (262)
100 1wf3_A GTP-binding protein; GT 98.4 3.6E-07 1.2E-11 104.3 8.5 68 214-281 54-131 (301)
101 1h65_A Chloroplast outer envel 98.4 6.1E-07 2.1E-11 100.8 10.3 97 400-518 39-147 (270)
102 3tlx_A Adenylate kinase 2; str 98.4 6.5E-08 2.2E-12 107.0 1.6 94 616-709 108-228 (243)
103 3lxx_A GTPase IMAP family memb 98.3 4.8E-07 1.6E-11 99.5 7.5 96 398-515 27-135 (239)
104 3tw8_B RAS-related protein RAB 98.3 8.2E-07 2.8E-11 92.2 8.5 90 395-505 4-95 (181)
105 2wji_A Ferrous iron transport 98.3 1.9E-06 6.5E-11 88.8 11.2 126 401-558 4-140 (165)
106 3t5d_A Septin-7; GTP-binding p 98.3 1.1E-06 3.8E-11 98.9 9.1 114 401-530 9-152 (274)
107 1vg8_A RAS-related protein RAB 98.3 1.7E-06 5.7E-11 92.3 10.0 88 397-505 5-94 (207)
108 1upt_A ARL1, ADP-ribosylation 98.3 1.5E-06 5.2E-11 89.3 9.3 79 400-504 7-87 (171)
109 2wjg_A FEOB, ferrous iron tran 98.3 1.7E-06 5.8E-11 90.7 9.8 104 400-530 7-120 (188)
110 3t1o_A Gliding protein MGLA; G 98.3 1.5E-06 5.3E-11 91.5 9.3 104 398-511 12-117 (198)
111 2g6b_A RAS-related protein RAB 98.3 2.1E-06 7.2E-11 89.2 10.0 88 398-505 8-97 (180)
112 3iev_A GTP-binding protein ERA 98.3 1E-06 3.6E-11 100.9 7.9 67 214-280 58-135 (308)
113 1jwy_B Dynamin A GTPase domain 98.3 5.2E-07 1.8E-11 103.5 5.4 61 468-530 129-206 (315)
114 3b1v_A Ferrous iron uptake tra 98.3 2E-06 6.8E-11 96.6 10.0 144 401-577 4-160 (272)
115 1ega_A Protein (GTP-binding pr 98.2 4E-07 1.4E-11 104.0 4.2 67 214-281 55-130 (301)
116 1svi_A GTP-binding protein YSX 98.2 9.9E-07 3.4E-11 93.1 6.8 105 399-530 22-142 (195)
117 1z0j_A RAB-22, RAS-related pro 98.2 1.6E-06 5.4E-11 89.0 8.1 85 400-505 6-92 (170)
118 3gj0_A GTP-binding nuclear pro 98.2 8.6E-07 2.9E-11 96.0 6.3 108 399-530 14-127 (221)
119 2gf9_A RAS-related protein RAB 98.2 2.6E-06 9E-11 89.6 9.9 85 399-504 21-107 (189)
120 3pqc_A Probable GTP-binding pr 98.2 1.5E-06 5E-11 91.5 7.9 105 399-530 22-141 (195)
121 2bme_A RAB4A, RAS-related prot 98.2 2.2E-06 7.5E-11 89.6 8.8 87 398-505 8-96 (186)
122 2fg5_A RAB-22B, RAS-related pr 98.2 2.2E-06 7.5E-11 90.6 8.8 83 400-504 23-108 (192)
123 3tkl_A RAS-related protein RAB 98.2 2.1E-06 7.2E-11 90.6 8.6 88 396-504 12-101 (196)
124 1m2o_B GTP-binding protein SAR 98.2 2.3E-06 7.9E-11 90.4 8.6 79 400-504 23-103 (190)
125 2efe_B Small GTP-binding prote 98.2 2.4E-06 8.2E-11 88.8 8.3 86 399-505 11-98 (181)
126 1r2q_A RAS-related protein RAB 98.2 2.1E-06 7E-11 88.0 7.6 84 400-504 6-91 (170)
127 1wms_A RAB-9, RAB9, RAS-relate 98.2 3.4E-06 1.2E-10 87.3 9.2 88 397-505 4-93 (177)
128 2h57_A ADP-ribosylation factor 98.2 2.6E-06 9E-11 89.7 8.4 81 400-504 21-103 (190)
129 3clv_A RAB5 protein, putative; 98.2 3.4E-06 1.2E-10 89.1 9.3 36 470-505 93-130 (208)
130 1z0f_A RAB14, member RAS oncog 98.2 2.7E-06 9.4E-11 88.0 8.2 87 398-505 13-101 (179)
131 1f6b_A SAR1; gtpases, N-termin 98.2 3.2E-06 1.1E-10 90.1 8.8 80 399-504 24-105 (198)
132 2p5s_A RAS and EF-hand domain 98.2 1.7E-06 5.7E-11 92.1 6.5 86 399-505 27-114 (199)
133 4bas_A ADP-ribosylation factor 98.2 4E-06 1.4E-10 88.6 9.4 83 398-504 15-99 (199)
134 2qu8_A Putative nucleolar GTP- 98.1 2.5E-06 8.4E-11 93.0 7.7 104 399-525 28-147 (228)
135 2fn4_A P23, RAS-related protei 98.1 2.9E-06 9.8E-11 88.0 7.8 86 397-504 6-93 (181)
136 1ky3_A GTP-binding protein YPT 98.1 4.3E-06 1.5E-10 86.8 9.1 89 397-505 5-95 (182)
137 1zbd_A Rabphilin-3A; G protein 98.1 3.8E-06 1.3E-10 89.4 8.9 85 399-504 7-93 (203)
138 2dyk_A GTP-binding protein; GT 98.1 4E-06 1.4E-10 85.2 8.6 68 214-281 48-122 (161)
139 3t5g_A GTP-binding protein RHE 98.1 4E-06 1.4E-10 87.3 8.8 84 399-504 5-90 (181)
140 2lkc_A Translation initiation 98.1 1.3E-06 4.3E-11 90.7 4.9 68 214-281 54-121 (178)
141 3pqc_A Probable GTP-binding pr 98.1 5.6E-06 1.9E-10 87.0 10.0 68 214-281 67-147 (195)
142 2h17_A ADP-ribosylation factor 98.1 3.4E-06 1.2E-10 88.2 8.2 79 400-504 21-101 (181)
143 2oil_A CATX-8, RAS-related pro 98.1 3.1E-06 1.1E-10 89.3 8.0 87 398-505 23-111 (193)
144 2x77_A ADP-ribosylation factor 98.1 2.9E-06 1E-10 89.1 7.5 79 400-504 22-102 (189)
145 1ksh_A ARF-like protein 2; sma 98.1 3.6E-06 1.2E-10 88.2 8.0 80 399-504 17-98 (186)
146 1r8s_A ADP-ribosylation factor 98.1 3.8E-06 1.3E-10 85.7 8.0 77 402-504 2-80 (164)
147 3dl0_A Adenylate kinase; phosp 98.1 3.9E-07 1.3E-11 98.6 0.4 93 617-709 80-199 (216)
148 1zj6_A ADP-ribosylation factor 98.1 3.3E-06 1.1E-10 88.6 7.6 79 400-504 16-96 (187)
149 1ek0_A Protein (GTP-binding pr 98.1 4.1E-06 1.4E-10 85.7 8.0 82 402-504 5-88 (170)
150 2aka_B Dynamin-1; fusion prote 98.1 2.4E-06 8.3E-11 97.0 6.7 124 401-530 27-200 (299)
151 1kao_A RAP2A; GTP-binding prot 98.1 3.5E-06 1.2E-10 85.9 7.3 81 402-504 5-87 (167)
152 4a9a_A Ribosome-interacting GT 98.1 1.4E-06 4.7E-11 101.8 4.7 81 402-505 74-163 (376)
153 4djt_A GTP-binding nuclear pro 98.1 1.8E-06 6.1E-11 93.1 5.2 92 398-509 9-102 (218)
154 3bc1_A RAS-related protein RAB 98.1 5.5E-06 1.9E-10 86.8 8.9 92 398-506 9-108 (195)
155 2y8e_A RAB-protein 6, GH09086P 98.1 4.9E-06 1.7E-10 86.1 8.3 85 399-504 13-99 (179)
156 1fzq_A ADP-ribosylation factor 98.1 3.6E-06 1.2E-10 88.2 7.3 83 396-504 12-96 (181)
157 2fu5_C RAS-related protein RAB 98.1 2.7E-06 9.4E-11 88.7 6.4 86 398-504 6-93 (183)
158 1x3s_A RAS-related protein RAB 98.1 4E-06 1.4E-10 88.2 7.7 85 400-505 15-101 (195)
159 1moz_A ARL1, ADP-ribosylation 98.1 2.7E-06 9.1E-11 88.7 6.2 81 398-504 16-98 (183)
160 1svi_A GTP-binding protein YSX 98.1 5.7E-06 1.9E-10 87.2 8.8 68 214-281 68-148 (195)
161 1mh1_A RAC1; GTP-binding, GTPa 98.1 7.2E-06 2.5E-10 85.4 9.5 106 401-530 6-117 (186)
162 3cph_A RAS-related protein SEC 98.1 5.3E-06 1.8E-10 88.8 8.6 84 400-504 20-105 (213)
163 1g16_A RAS-related protein SEC 98.1 4.5E-06 1.5E-10 85.5 7.7 85 400-505 3-89 (170)
164 2fh5_B SR-beta, signal recogni 98.1 3.7E-06 1.3E-10 90.4 7.2 83 398-503 5-90 (214)
165 2nzj_A GTP-binding protein REM 98.1 5.1E-06 1.7E-10 85.7 7.8 82 401-504 5-90 (175)
166 1z2a_A RAS-related protein RAB 98.1 6.2E-06 2.1E-10 84.3 8.4 85 399-504 4-90 (168)
167 1zd9_A ADP-ribosylation factor 98.1 4.2E-06 1.4E-10 88.1 7.2 79 401-504 23-103 (188)
168 3llu_A RAS-related GTP-binding 98.1 6E-06 2E-10 87.6 8.4 93 399-512 19-116 (196)
169 3oes_A GTPase rhebl1; small GT 98.1 5.4E-06 1.8E-10 88.3 7.8 84 399-504 23-108 (201)
170 3t1o_A Gliding protein MGLA; G 98.1 6.1E-06 2.1E-10 86.8 8.2 67 215-281 74-149 (198)
171 3cpj_B GTP-binding protein YPT 98.0 8.2E-06 2.8E-10 88.5 8.9 87 398-505 11-99 (223)
172 2fv8_A H6, RHO-related GTP-bin 98.0 8.3E-06 2.8E-10 87.3 8.8 104 400-525 25-134 (207)
173 2bcg_Y Protein YP2, GTP-bindin 98.0 9.8E-06 3.4E-10 86.4 9.3 86 398-504 6-93 (206)
174 2atx_A Small GTP binding prote 98.0 1.1E-05 3.9E-10 85.0 9.5 84 399-504 17-102 (194)
175 2rcn_A Probable GTPase ENGC; Y 98.0 7.6E-06 2.6E-10 94.9 8.7 47 233-281 125-174 (358)
176 2gco_A H9, RHO-related GTP-bin 98.0 1.1E-05 3.7E-10 86.0 9.3 103 401-525 26-134 (201)
177 3r7w_A Gtpase1, GTP-binding pr 98.0 6E-06 2.1E-10 94.5 7.8 88 401-509 4-98 (307)
178 2hxs_A RAB-26, RAS-related pro 98.0 7.1E-06 2.4E-10 85.0 7.5 86 400-505 6-93 (178)
179 2ew1_A RAS-related protein RAB 98.0 1.1E-05 3.9E-10 86.1 9.3 88 396-504 22-111 (201)
180 3kkq_A RAS-related protein M-R 98.0 8.7E-06 3E-10 84.9 8.1 83 400-504 18-102 (183)
181 2a5j_A RAS-related protein RAB 98.0 8E-06 2.7E-10 86.1 7.9 85 400-505 21-107 (191)
182 3qq5_A Small GTP-binding prote 98.0 4.8E-06 1.6E-10 99.1 6.8 64 216-281 84-154 (423)
183 3l0i_B RAS-related protein RAB 98.0 2.5E-06 8.5E-11 90.7 3.9 87 398-505 31-119 (199)
184 4dsu_A GTPase KRAS, isoform 2B 98.0 1E-05 3.4E-10 84.6 8.5 82 401-504 5-88 (189)
185 4gzl_A RAS-related C3 botulinu 98.0 1.3E-05 4.3E-10 85.8 9.4 107 400-530 30-142 (204)
186 2b6h_A ADP-ribosylation factor 98.0 6E-06 2E-10 87.4 6.7 79 400-504 29-109 (192)
187 3reg_A RHO-like small GTPase; 98.0 1.3E-05 4.3E-10 84.7 9.1 85 399-505 22-108 (194)
188 1z06_A RAS-related protein RAB 98.0 6.9E-06 2.4E-10 86.4 7.0 85 399-504 19-106 (189)
189 1c1y_A RAS-related protein RAP 98.0 9.2E-06 3.2E-10 82.9 7.7 82 401-504 4-87 (167)
190 2xtp_A GTPase IMAP family memb 98.0 8.1E-06 2.8E-10 90.9 7.8 67 214-281 70-153 (260)
191 1u8z_A RAS-related protein RAL 98.0 7.9E-06 2.7E-10 83.3 7.1 82 401-504 5-88 (168)
192 1z08_A RAS-related protein RAB 98.0 1.8E-05 6E-10 81.2 9.6 84 400-504 6-91 (170)
193 3q72_A GTP-binding protein RAD 98.0 4.9E-06 1.7E-10 85.1 5.3 80 402-504 4-85 (166)
194 3lxw_A GTPase IMAP family memb 98.0 1E-05 3.5E-10 89.5 8.2 67 214-281 69-153 (247)
195 2a9k_A RAS-related protein RAL 98.0 8.9E-06 3E-10 84.7 7.3 84 399-504 17-102 (187)
196 2qpt_A EH domain-containing pr 98.0 6E-06 2E-10 101.9 6.9 125 399-530 64-226 (550)
197 3dz8_A RAS-related protein RAB 98.0 3.6E-06 1.2E-10 88.8 4.1 85 399-504 22-108 (191)
198 2erx_A GTP-binding protein DI- 98.0 1.1E-05 3.8E-10 82.7 7.7 81 402-504 5-87 (172)
199 2o52_A RAS-related protein RAB 98.0 7.3E-06 2.5E-10 87.2 6.5 86 399-505 24-111 (200)
200 2il1_A RAB12; G-protein, GDP, 97.9 6E-06 2.1E-10 87.3 5.7 86 400-506 26-113 (192)
201 2qtf_A Protein HFLX, GTP-bindi 97.9 9.5E-06 3.2E-10 94.9 7.9 82 400-504 179-270 (364)
202 3fb4_A Adenylate kinase; psych 97.9 1.1E-06 3.9E-11 94.8 -0.1 93 617-709 80-199 (216)
203 3bwd_D RAC-like GTP-binding pr 97.9 1.4E-05 4.6E-10 83.1 8.0 83 400-504 8-92 (182)
204 2j69_A Bacterial dynamin-like 97.9 5.6E-06 1.9E-10 105.0 5.9 59 470-530 174-238 (695)
205 2j0v_A RAC-like GTP-binding pr 97.9 2.7E-05 9.2E-10 83.4 10.2 83 400-504 9-93 (212)
206 3con_A GTPase NRAS; structural 97.9 2.2E-05 7.5E-10 82.4 9.2 83 401-505 22-106 (190)
207 2q3h_A RAS homolog gene family 97.9 2.1E-05 7.2E-10 83.4 9.1 83 400-504 20-104 (201)
208 1m7b_A RND3/RHOE small GTP-bin 97.9 2.6E-05 8.9E-10 81.6 9.6 84 399-504 6-91 (184)
209 1jwy_B Dynamin A GTPase domain 97.9 1.2E-05 4.1E-10 92.1 7.4 68 214-281 130-212 (315)
210 3q85_A GTP-binding protein REM 97.9 1.4E-05 4.8E-10 81.9 6.9 83 401-504 3-88 (169)
211 2ce2_X GTPase HRAS; signaling 97.9 2E-05 7E-10 79.9 8.1 81 402-504 5-87 (166)
212 2cxx_A Probable GTP-binding pr 97.9 7.7E-06 2.6E-10 85.6 5.0 23 401-423 2-24 (190)
213 2yc2_C IFT27, small RAB-relate 97.9 8.3E-06 2.8E-10 86.7 5.2 86 401-505 21-110 (208)
214 3lvq_E ARF-GAP with SH3 domain 97.9 1.9E-05 6.4E-10 96.6 9.0 80 399-504 321-402 (497)
215 1wxq_A GTP-binding protein; st 97.9 1.2E-05 4E-10 95.2 6.8 85 402-504 2-114 (397)
216 3o47_A ADP-ribosylation factor 97.9 8.9E-06 3.1E-10 94.0 5.7 89 401-515 166-258 (329)
217 2bov_A RAla, RAS-related prote 97.9 2.1E-05 7.1E-10 83.6 8.1 84 399-504 13-98 (206)
218 2gf0_A GTP-binding protein DI- 97.9 1.9E-05 6.6E-10 83.3 7.7 83 400-504 8-92 (199)
219 2qpt_A EH domain-containing pr 97.9 2.6E-05 8.9E-10 96.1 9.9 67 215-281 154-232 (550)
220 3be4_A Adenylate kinase; malar 97.8 6.4E-06 2.2E-10 89.2 3.7 93 617-709 85-204 (217)
221 2atv_A RERG, RAS-like estrogen 97.8 2.4E-05 8.1E-10 82.8 7.8 83 400-504 28-111 (196)
222 1r8s_A ADP-ribosylation factor 97.8 2.4E-05 8.3E-10 79.7 7.6 68 214-281 43-115 (164)
223 2f7s_A C25KG, RAS-related prot 97.8 8.5E-06 2.9E-10 87.7 4.3 90 398-505 23-121 (217)
224 2x2e_A Dynamin-1; nitration, h 97.8 1.4E-05 4.8E-10 93.3 6.3 124 401-530 32-205 (353)
225 2hup_A RAS-related protein RAB 97.8 2.1E-05 7.2E-10 83.8 7.2 85 399-504 28-114 (201)
226 2il1_A RAB12; G-protein, GDP, 97.8 2.1E-05 7E-10 83.1 7.0 67 215-281 75-145 (192)
227 3q3j_B RHO-related GTP-binding 97.8 4.5E-05 1.5E-09 82.1 9.8 83 401-505 28-112 (214)
228 2fh5_B SR-beta, signal recogni 97.8 5.8E-05 2E-09 80.9 10.6 66 215-281 54-129 (214)
229 3t5d_A Septin-7; GTP-binding p 97.8 0.00013 4.5E-09 81.8 13.9 65 216-281 66-158 (274)
230 2j1l_A RHO-related GTP-binding 97.8 2.6E-05 9.1E-10 83.9 7.8 83 400-504 34-118 (214)
231 2efe_B Small GTP-binding prote 97.8 2.2E-05 7.5E-10 81.4 6.8 67 215-281 61-131 (181)
232 3i8s_A Ferrous iron transport 97.8 2E-05 6.9E-10 88.6 7.0 66 214-281 49-126 (274)
233 1nrj_B SR-beta, signal recogni 97.8 7.4E-05 2.5E-09 80.3 11.2 68 214-281 54-134 (218)
234 1gwn_A RHO-related GTP-binding 97.8 4.9E-05 1.7E-09 81.4 9.5 84 399-504 27-112 (205)
235 1jal_A YCHF protein; nucleotid 97.8 2.3E-05 7.7E-10 91.1 7.1 85 402-504 4-109 (363)
236 2gj8_A MNME, tRNA modification 97.8 2.9E-05 1E-09 80.5 7.2 67 214-280 51-128 (172)
237 1z0f_A RAB14, member RAS oncog 97.8 4.1E-05 1.4E-09 79.0 8.4 67 215-281 64-134 (179)
238 3llu_A RAS-related GTP-binding 97.8 7.2E-05 2.5E-09 79.1 10.1 67 215-281 69-143 (196)
239 1upt_A ARL1, ADP-ribosylation 97.8 1.4E-05 4.7E-10 82.1 4.3 68 214-281 50-122 (171)
240 1f5n_A Interferon-induced guan 97.8 3.4E-05 1.2E-09 95.0 8.4 101 396-518 34-147 (592)
241 2p5s_A RAS and EF-hand domain 97.8 2.8E-05 9.4E-10 82.6 6.7 67 215-281 77-147 (199)
242 3ihw_A Centg3; RAS, centaurin, 97.7 4.2E-05 1.4E-09 80.3 8.0 79 401-505 21-99 (184)
243 1xzp_A Probable tRNA modificat 97.7 5E-05 1.7E-09 91.9 9.6 83 196-281 273-364 (482)
244 1z06_A RAS-related protein RAB 97.7 3.6E-05 1.2E-09 80.8 7.4 67 215-281 69-141 (189)
245 3clv_A RAB5 protein, putative; 97.7 4.4E-05 1.5E-09 80.4 8.1 64 215-278 93-158 (208)
246 1kao_A RAP2A; GTP-binding prot 97.7 3E-05 1E-09 78.8 6.6 67 215-281 51-122 (167)
247 3bc1_A RAS-related protein RAB 97.7 2.8E-05 9.5E-10 81.4 6.3 67 215-281 70-141 (195)
248 1ak2_A Adenylate kinase isoenz 97.7 6E-06 2E-10 90.5 1.1 92 617-708 96-214 (233)
249 3iby_A Ferrous iron transport 97.7 2.6E-05 8.8E-10 86.8 6.1 66 214-281 47-124 (256)
250 1nrj_B SR-beta, signal recogni 97.7 3E-05 1E-09 83.4 6.4 77 399-502 11-93 (218)
251 1zj6_A ADP-ribosylation factor 97.7 2.7E-05 9.1E-10 81.7 5.8 68 214-281 59-131 (187)
252 1zd9_A ADP-ribosylation factor 97.7 2.3E-05 7.9E-10 82.3 5.2 68 214-281 66-138 (188)
253 1r2q_A RAS-related protein RAB 97.7 4.1E-05 1.4E-09 78.2 6.9 68 214-281 54-125 (170)
254 4bas_A ADP-ribosylation factor 97.7 2.5E-05 8.4E-10 82.5 5.2 68 214-281 62-141 (199)
255 2e87_A Hypothetical protein PH 97.7 8.3E-05 2.8E-09 86.9 10.1 82 399-503 166-258 (357)
256 1ek0_A Protein (GTP-binding pr 97.7 7.7E-05 2.6E-09 76.1 8.6 67 215-281 52-122 (170)
257 2bme_A RAB4A, RAS-related prot 97.7 5.1E-05 1.7E-09 79.1 7.0 67 215-281 59-129 (186)
258 1z0j_A RAB-22, RAS-related pro 97.7 4.7E-05 1.6E-09 77.8 6.6 67 215-281 55-125 (170)
259 2h57_A ADP-ribosylation factor 97.7 2.5E-05 8.6E-10 82.1 4.6 68 214-281 66-140 (190)
260 2b6h_A ADP-ribosylation factor 97.7 3.6E-05 1.2E-09 81.3 5.8 68 214-281 72-144 (192)
261 3gee_A MNME, tRNA modification 97.7 2.6E-05 9.1E-10 94.3 5.3 82 197-281 264-357 (476)
262 3reg_A RHO-like small GTPase; 97.7 3.8E-05 1.3E-09 81.0 5.9 66 216-281 72-141 (194)
263 2h17_A ADP-ribosylation factor 97.6 2.4E-05 8.1E-10 81.7 4.1 68 214-281 64-136 (181)
264 3lxx_A GTPase IMAP family memb 97.6 8E-05 2.7E-09 81.6 8.5 67 214-281 77-159 (239)
265 1u8z_A RAS-related protein RAL 97.6 5.2E-05 1.8E-09 77.1 6.5 67 215-281 52-123 (168)
266 2fg5_A RAB-22B, RAS-related pr 97.6 7E-05 2.4E-09 78.9 7.6 68 214-281 71-142 (192)
267 1zbd_A Rabphilin-3A; G protein 97.6 6E-05 2.1E-09 80.0 7.1 67 215-281 57-127 (203)
268 1aky_A Adenylate kinase; ATP:A 97.6 1.1E-05 3.9E-10 87.3 1.4 92 617-708 85-203 (220)
269 3kkq_A RAS-related protein M-R 97.6 4E-05 1.4E-09 79.8 5.5 66 216-281 67-137 (183)
270 2ged_A SR-beta, signal recogni 97.6 8.1E-05 2.8E-09 78.2 7.9 68 214-281 90-170 (193)
271 2erx_A GTP-binding protein DI- 97.6 7.1E-05 2.4E-09 76.5 7.3 67 215-281 51-123 (172)
272 2g6b_A RAS-related protein RAB 97.6 4.9E-05 1.7E-09 78.7 6.1 66 216-281 61-130 (180)
273 1pui_A ENGB, probable GTP-bind 97.6 3.1E-05 1.1E-09 82.7 4.7 99 402-525 28-142 (210)
274 3c5c_A RAS-like protein 12; GD 97.6 9.7E-05 3.3E-09 77.6 8.4 83 400-504 21-104 (187)
275 2a9k_A RAS-related protein RAL 97.6 5.9E-05 2E-09 78.4 6.7 66 216-281 67-137 (187)
276 2fu5_C RAS-related protein RAB 97.6 5.3E-05 1.8E-09 78.8 6.3 67 215-281 57-127 (183)
277 1lnz_A SPO0B-associated GTP-bi 97.6 2.5E-05 8.6E-10 90.4 4.2 82 400-503 158-248 (342)
278 2y8e_A RAB-protein 6, GH09086P 97.6 9E-05 3.1E-09 76.4 7.9 67 215-281 63-133 (179)
279 1c1y_A RAS-related protein RAP 97.6 5.4E-05 1.9E-09 77.1 6.1 67 215-281 51-122 (167)
280 2aka_B Dynamin-1; fusion prote 97.6 7.6E-05 2.6E-09 84.6 7.9 67 215-281 125-206 (299)
281 3tkl_A RAS-related protein RAB 97.6 9.9E-05 3.4E-09 77.6 8.0 67 215-281 65-135 (196)
282 1fzq_A ADP-ribosylation factor 97.6 8E-05 2.7E-09 77.8 7.2 68 214-281 59-131 (181)
283 3dpu_A RAB family protein; roc 97.6 9E-05 3.1E-09 91.4 8.6 112 398-530 39-158 (535)
284 3geh_A MNME, tRNA modification 97.6 3.6E-05 1.2E-09 92.7 4.8 82 197-281 255-344 (462)
285 3th5_A RAS-related C3 botulinu 96.7 1E-05 3.5E-10 86.3 0.0 66 216-281 79-148 (204)
286 3cph_A RAS-related protein SEC 97.6 8.5E-05 2.9E-09 79.3 7.1 66 215-280 69-138 (213)
287 2oil_A CATX-8, RAS-related pro 97.6 6.9E-05 2.4E-09 78.8 6.2 68 214-281 73-144 (193)
288 3th5_A RAS-related C3 botulinu 96.7 1.1E-05 3.8E-10 86.0 0.0 83 400-504 30-114 (204)
289 1x3s_A RAS-related protein RAB 97.6 6.3E-05 2.2E-09 78.9 5.9 66 215-280 64-134 (195)
290 3r7w_A Gtpase1, GTP-binding pr 97.6 0.00018 6.2E-09 82.1 10.1 91 215-311 52-153 (307)
291 2a5j_A RAS-related protein RAB 97.6 5E-05 1.7E-09 79.9 5.1 67 215-281 70-140 (191)
292 2wkq_A NPH1-1, RAS-related C3 97.6 0.00016 5.4E-09 83.0 9.7 107 400-530 155-267 (332)
293 1h65_A Chloroplast outer envel 97.5 0.00026 8.7E-09 79.2 11.1 68 214-281 86-168 (270)
294 2x77_A ADP-ribosylation factor 97.5 2E-05 7E-10 82.6 1.9 68 214-281 65-137 (189)
295 1g16_A RAS-related protein SEC 97.5 5.6E-05 1.9E-09 77.2 5.1 66 215-280 52-121 (170)
296 1ksh_A ARF-like protein 2; sma 97.5 3.3E-05 1.1E-09 80.7 3.5 68 214-281 61-133 (186)
297 2gf9_A RAS-related protein RAB 97.5 4.6E-05 1.6E-09 80.0 4.5 67 215-281 71-141 (189)
298 1ky3_A GTP-binding protein YPT 97.5 0.00012 4.1E-09 75.6 7.6 67 215-281 58-132 (182)
299 3k53_A Ferrous iron transport 97.5 9E-05 3.1E-09 83.0 7.1 66 214-281 49-123 (271)
300 2ce2_X GTPase HRAS; signaling 97.5 0.00011 3.6E-09 74.5 7.0 67 215-281 51-122 (166)
301 3o47_A ADP-ribosylation factor 97.5 4.9E-05 1.7E-09 87.8 4.9 68 214-281 208-280 (329)
302 2ohf_A Protein OLA1, GTP-bindi 97.5 5.2E-05 1.8E-09 88.9 5.1 86 401-504 23-129 (396)
303 3a1s_A Iron(II) transport prot 97.5 8.9E-05 3E-09 82.5 6.8 66 214-281 51-124 (258)
304 2wsm_A Hydrogenase expression/ 97.5 7.8E-05 2.7E-09 80.4 6.1 105 398-505 28-143 (221)
305 1mh1_A RAC1; GTP-binding, GTPa 97.5 4E-05 1.4E-09 79.7 3.4 66 216-281 54-123 (186)
306 2fn4_A P23, RAS-related protei 97.5 6.3E-05 2.1E-09 77.7 4.9 67 215-281 57-128 (181)
307 1m2o_B GTP-binding protein SAR 97.5 3.7E-05 1.3E-09 81.1 3.1 68 214-281 66-138 (190)
308 3dz8_A RAS-related protein RAB 97.5 8.3E-05 2.8E-09 78.2 5.8 68 214-281 71-142 (191)
309 1wms_A RAB-9, RAB9, RAS-relate 97.5 0.00013 4.6E-09 75.1 7.2 65 216-280 57-129 (177)
310 3gj0_A GTP-binding nuclear pro 97.5 6.7E-05 2.3E-09 80.9 5.1 67 215-281 64-133 (221)
311 4djt_A GTP-binding nuclear pro 97.5 4.9E-05 1.7E-09 81.7 3.9 67 215-281 61-131 (218)
312 3t34_A Dynamin-related protein 97.5 8.9E-05 3.1E-09 86.7 6.4 61 468-530 134-211 (360)
313 1z08_A RAS-related protein RAB 97.5 0.00014 4.6E-09 74.4 7.1 66 216-281 56-125 (170)
314 1vg8_A RAS-related protein RAB 97.5 8.3E-05 2.8E-09 79.0 5.6 66 215-280 57-130 (207)
315 3tw8_B RAS-related protein RAB 97.5 5.4E-05 1.9E-09 78.2 4.1 67 215-281 58-127 (181)
316 2hup_A RAS-related protein RAB 97.5 0.00017 5.8E-09 76.7 8.1 67 215-281 78-148 (201)
317 1z2a_A RAS-related protein RAB 97.5 8.8E-05 3E-09 75.6 5.6 67 215-281 54-123 (168)
318 2yc2_C IFT27, small RAB-relate 97.5 6.3E-05 2.1E-09 79.8 4.5 66 216-281 74-146 (208)
319 2dby_A GTP-binding protein; GD 97.5 6.6E-05 2.2E-09 87.7 5.0 86 401-504 2-112 (368)
320 4dsu_A GTPase KRAS, isoform 2B 97.5 7.8E-05 2.7E-09 77.7 5.0 66 216-281 53-123 (189)
321 1f6b_A SAR1; gtpases, N-termin 97.5 5.2E-05 1.8E-09 80.6 3.6 68 214-281 68-140 (198)
322 3t5g_A GTP-binding protein RHE 97.4 3.5E-05 1.2E-09 80.0 2.1 67 215-281 54-125 (181)
323 2f7s_A C25KG, RAS-related prot 97.4 7.1E-05 2.4E-09 80.4 4.5 65 215-281 84-155 (217)
324 3zvr_A Dynamin-1; hydrolase, D 97.4 9.5E-05 3.3E-09 93.3 6.2 124 401-530 52-225 (772)
325 2hxs_A RAB-26, RAS-related pro 97.4 0.0001 3.5E-09 76.0 5.6 67 215-281 56-129 (178)
326 2iwr_A Centaurin gamma 1; ANK 97.4 0.00016 5.5E-09 74.7 7.0 78 401-504 8-85 (178)
327 2atx_A Small GTP binding prote 97.4 5.8E-05 2E-09 79.5 3.6 67 215-281 66-136 (194)
328 1e4v_A Adenylate kinase; trans 97.4 5.2E-05 1.8E-09 81.7 3.3 91 617-710 80-201 (214)
329 2bov_A RAla, RAS-related prote 97.4 0.00014 4.9E-09 77.0 6.7 66 216-281 63-133 (206)
330 2qag_A Septin-2, protein NEDD5 97.4 0.00014 4.8E-09 85.0 7.2 115 401-530 38-182 (361)
331 3bwd_D RAC-like GTP-binding pr 97.4 5.6E-05 1.9E-09 78.4 3.3 67 215-281 56-126 (182)
332 2wji_A Ferrous iron transport 97.4 0.00021 7.1E-09 73.3 7.4 66 214-281 49-122 (165)
333 4gzl_A RAS-related C3 botulinu 97.4 4.1E-05 1.4E-09 81.7 2.2 66 216-281 79-148 (204)
334 2bcg_Y Protein YP2, GTP-bindin 97.4 6.5E-05 2.2E-09 80.0 3.7 67 215-281 57-127 (206)
335 3cbq_A GTP-binding protein REM 97.4 0.00014 4.8E-09 77.0 6.3 84 400-504 23-109 (195)
336 2gco_A H9, RHO-related GTP-bin 97.4 6.8E-05 2.3E-09 79.7 3.7 67 215-281 73-143 (201)
337 2ew1_A RAS-related protein RAB 97.4 0.00013 4.3E-09 77.9 5.8 67 215-281 75-145 (201)
338 2ged_A SR-beta, signal recogni 97.4 7.3E-05 2.5E-09 78.6 3.8 77 399-502 47-129 (193)
339 2gf0_A GTP-binding protein DI- 97.4 0.00017 5.6E-09 76.0 6.3 67 215-281 56-128 (199)
340 1moz_A ARL1, ADP-ribosylation 97.4 5.5E-05 1.9E-09 78.6 2.4 68 214-281 61-133 (183)
341 3def_A T7I23.11 protein; chlor 97.4 0.00027 9.4E-09 78.7 8.2 67 214-280 83-164 (262)
342 3con_A GTPase NRAS; structural 97.4 0.00015 5.2E-09 75.9 5.7 67 215-281 69-140 (190)
343 2qu8_A Putative nucleolar GTP- 97.3 0.00033 1.1E-08 76.0 8.4 68 214-281 75-156 (228)
344 2f9l_A RAB11B, member RAS onco 97.3 0.00031 1.1E-08 74.4 7.9 84 400-504 5-90 (199)
345 2j69_A Bacterial dynamin-like 97.3 0.00016 5.6E-09 91.6 6.7 67 215-281 174-244 (695)
346 2atv_A RERG, RAS-like estrogen 97.3 0.00026 9E-09 74.6 7.2 66 215-281 76-146 (196)
347 3oes_A GTPase rhebl1; small GT 97.3 4.7E-05 1.6E-09 80.9 1.2 68 214-281 71-143 (201)
348 3zvr_A Dynamin-1; hydrolase, D 97.3 0.00023 7.8E-09 89.9 7.5 67 215-281 150-231 (772)
349 2fv8_A H6, RHO-related GTP-bin 97.3 9.2E-05 3.1E-09 79.0 3.5 67 215-281 73-143 (207)
350 1ni3_A YCHF GTPase, YCHF GTP-b 97.3 0.00027 9.2E-09 83.0 7.5 88 400-504 20-128 (392)
351 2j0v_A RAC-like GTP-binding pr 97.3 8E-05 2.7E-09 79.6 2.7 67 215-281 57-127 (212)
352 2j1l_A RHO-related GTP-binding 97.3 0.00016 5.5E-09 77.7 5.0 66 216-281 83-152 (214)
353 2o52_A RAS-related protein RAB 97.3 0.00013 4.4E-09 77.5 4.1 67 215-281 74-144 (200)
354 3t34_A Dynamin-related protein 97.3 0.00025 8.5E-09 82.9 6.9 67 215-281 136-217 (360)
355 3cpj_B GTP-binding protein YPT 97.3 8.5E-05 2.9E-09 80.4 2.6 67 215-281 62-132 (223)
356 2q3h_A RAS homolog gene family 97.2 0.00014 4.8E-09 77.0 3.7 66 216-281 69-138 (201)
357 2p67_A LAO/AO transport system 97.2 8E-05 2.7E-09 86.4 1.9 101 398-504 54-182 (341)
358 3q85_A GTP-binding protein REM 97.2 0.00042 1.4E-08 70.7 7.2 67 215-281 51-123 (169)
359 3q72_A GTP-binding protein RAD 97.2 0.00015 5.1E-09 73.9 3.6 67 215-281 49-120 (166)
360 2zej_A Dardarin, leucine-rich 97.2 0.00019 6.4E-09 75.1 4.3 87 402-504 4-92 (184)
361 3q3j_B RHO-related GTP-binding 97.2 0.00015 5E-09 78.1 3.6 67 215-281 75-145 (214)
362 3e1y_E Eukaryotic peptide chai 97.2 0.00047 1.6E-08 73.7 7.4 82 790-887 4-88 (204)
363 1m7b_A RND3/RHOE small GTP-bin 97.2 0.00013 4.6E-09 76.1 3.0 67 215-281 55-125 (184)
364 3l0i_B RAS-related protein RAB 97.2 0.00011 3.9E-09 77.7 2.4 67 215-281 82-152 (199)
365 2wjg_A FEOB, ferrous iron tran 97.2 0.00041 1.4E-08 72.3 6.5 66 214-281 53-126 (188)
366 3b1v_A Ferrous iron uptake tra 97.2 0.00031 1.1E-08 78.7 5.9 65 215-281 49-121 (272)
367 2p67_A LAO/AO transport system 97.2 0.00019 6.3E-09 83.3 4.0 61 214-281 148-208 (341)
368 1yrb_A ATP(GTP)binding protein 97.2 0.00074 2.5E-08 74.7 8.8 66 215-281 109-185 (262)
369 2nzj_A GTP-binding protein REM 97.1 0.0005 1.7E-08 70.5 6.8 66 216-281 53-125 (175)
370 3lvq_E ARF-GAP with SH3 domain 97.1 0.00023 7.8E-09 87.0 4.3 68 214-281 365-437 (497)
371 2cjw_A GTP-binding protein GEM 97.1 0.00061 2.1E-08 71.9 7.0 83 401-503 7-92 (192)
372 1gwn_A RHO-related GTP-binding 97.1 0.00021 7.3E-09 76.3 3.0 67 215-281 76-146 (205)
373 3ihw_A Centg3; RAS, centaurin, 97.0 0.0011 3.7E-08 69.4 8.2 60 216-280 68-132 (184)
374 2cxx_A Probable GTP-binding pr 97.0 0.001 3.4E-08 69.3 7.4 66 216-281 45-136 (190)
375 2x2e_A Dynamin-1; nitration, h 97.0 0.00079 2.7E-08 78.4 7.3 67 215-281 130-211 (353)
376 2www_A Methylmalonic aciduria 97.0 0.00027 9.3E-09 82.1 3.2 37 468-505 165-201 (349)
377 2g3y_A GTP-binding protein GEM 97.0 0.00067 2.3E-08 73.0 6.0 84 400-503 37-123 (211)
378 1zd8_A GTP:AMP phosphotransfer 97.0 0.00015 5.2E-09 78.8 0.8 87 617-707 86-198 (227)
379 3c5c_A RAS-like protein 12; GD 96.9 0.00067 2.3E-08 71.1 5.1 66 215-281 69-141 (187)
380 3p32_A Probable GTPase RV1496/ 96.9 0.00039 1.3E-08 81.1 3.6 28 397-424 76-103 (355)
381 2iwr_A Centaurin gamma 1; ANK 96.8 0.0013 4.5E-08 67.7 6.8 60 216-280 55-121 (178)
382 2j37_W Signal recognition part 96.8 0.00043 1.5E-08 83.9 3.3 104 398-506 99-228 (504)
383 1oix_A RAS-related protein RAB 96.8 0.0022 7.6E-08 67.4 8.5 84 400-504 29-114 (191)
384 3p32_A Probable GTPase RV1496/ 96.8 0.001 3.4E-08 77.6 6.0 61 214-281 171-231 (355)
385 2wkq_A NPH1-1, RAS-related C3 96.8 0.00037 1.3E-08 79.8 2.3 66 216-281 204-273 (332)
386 2c95_A Adenylate kinase 1; tra 96.8 0.00029 9.9E-09 74.2 1.0 77 617-697 90-166 (196)
387 3cbq_A GTP-binding protein REM 96.8 0.0034 1.2E-07 66.2 9.2 66 216-281 73-144 (195)
388 1lnz_A SPO0B-associated GTP-bi 96.7 0.00084 2.9E-08 77.6 4.6 67 215-281 206-288 (342)
389 4dkx_A RAS-related protein RAB 96.7 0.0024 8.1E-08 68.9 7.4 82 402-504 15-98 (216)
390 1ukz_A Uridylate kinase; trans 96.7 0.00047 1.6E-08 73.2 1.8 77 617-697 98-174 (203)
391 3dpu_A RAB family protein; roc 96.6 0.0011 3.7E-08 81.7 5.0 66 214-281 97-164 (535)
392 2qm8_A GTPase/ATPase; G protei 96.6 0.0006 2.1E-08 78.8 2.3 23 401-423 56-78 (337)
393 1wxq_A GTP-binding protein; st 96.6 0.00089 3E-08 79.1 3.7 36 216-251 72-114 (397)
394 2cdn_A Adenylate kinase; phosp 96.6 0.00085 2.9E-08 71.2 3.2 75 617-696 100-175 (201)
395 3sop_A Neuronal-specific septi 96.5 0.0029 1E-07 70.6 6.8 110 402-524 4-144 (270)
396 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0046 1.6E-07 72.1 8.3 68 214-281 225-306 (364)
397 2qag_A Septin-2, protein NEDD5 96.4 0.0034 1.2E-07 73.2 7.1 65 216-281 96-188 (361)
398 2e87_A Hypothetical protein PH 96.4 0.0062 2.1E-07 70.9 9.3 68 214-281 213-294 (357)
399 1udx_A The GTP-binding protein 96.4 0.0031 1.1E-07 74.7 6.8 80 401-502 158-246 (416)
400 1pui_A ENGB, probable GTP-bind 96.4 0.0048 1.7E-07 65.4 7.7 66 216-281 73-151 (210)
401 3c5h_A Glucocorticoid receptor 96.4 0.004 1.4E-07 68.8 6.9 23 401-423 20-51 (255)
402 2v3c_C SRP54, signal recogniti 96.3 0.0042 1.5E-07 74.0 7.0 26 399-424 98-123 (432)
403 2zej_A Dardarin, leucine-rich 96.1 0.0034 1.2E-07 65.3 4.4 67 215-281 56-126 (184)
404 2qag_B Septin-6, protein NEDD5 96.1 0.0078 2.7E-07 71.2 7.8 107 400-524 42-180 (427)
405 2j37_W Signal recognition part 96.1 0.0046 1.6E-07 74.9 6.0 65 214-281 183-254 (504)
406 4a9a_A Ribosome-interacting GT 96.0 0.0076 2.6E-07 70.3 7.1 67 214-281 118-196 (376)
407 3r7w_B Gtpase2, GTP-binding pr 96.0 0.0051 1.7E-07 70.2 5.4 65 216-281 47-120 (331)
408 1yrb_A ATP(GTP)binding protein 96.0 0.0031 1.1E-07 69.6 3.6 24 400-423 14-37 (262)
409 2qag_C Septin-7; cell cycle, c 96.0 0.014 4.9E-07 69.0 9.4 23 402-424 33-55 (418)
410 3q5d_A Atlastin-1; G protein, 95.9 0.0097 3.3E-07 70.9 7.3 27 397-423 64-90 (447)
411 4dkx_A RAS-related protein RAB 95.8 0.013 4.6E-07 63.0 7.4 66 216-281 63-132 (216)
412 2xb4_A Adenylate kinase; ATP-b 95.6 0.0008 2.7E-08 72.9 -3.5 93 617-709 79-209 (223)
413 1vi7_A Hypothetical protein YI 95.5 0.025 8.4E-07 60.1 7.9 110 1101-1216 93-202 (217)
414 1cip_A Protein (guanine nucleo 95.5 0.0053 1.8E-07 71.2 2.9 67 215-281 193-274 (353)
415 3r7w_B Gtpase2, GTP-binding pr 95.5 0.027 9.2E-07 64.2 8.6 81 402-505 1-86 (331)
416 1tq4_A IIGP1, interferon-induc 95.4 0.042 1.4E-06 64.9 10.3 120 401-543 70-196 (413)
417 2f9l_A RAB11B, member RAS onco 95.4 0.015 5E-07 61.3 5.8 66 216-281 55-124 (199)
418 1zcb_A G alpha I/13; GTP-bindi 95.2 0.0071 2.4E-07 70.4 2.7 68 214-281 200-282 (362)
419 2xxa_A Signal recognition part 95.1 0.01 3.4E-07 70.8 3.9 27 398-424 98-124 (433)
420 4fid_A G protein alpha subunit 95.0 0.016 5.4E-07 66.6 5.0 67 215-281 161-242 (340)
421 2cve_A Hypothetical protein TT 95.0 0.035 1.2E-06 57.7 7.0 110 1100-1216 80-190 (191)
422 3dm5_A SRP54, signal recogniti 94.5 0.021 7.1E-07 67.9 4.3 26 399-424 99-124 (443)
423 1j8m_F SRP54, signal recogniti 94.5 0.068 2.3E-06 60.4 8.2 64 214-280 180-252 (297)
424 2wsm_A Hydrogenase expression/ 94.3 0.015 5.3E-07 62.1 2.3 61 214-281 108-168 (221)
425 2www_A Methylmalonic aciduria 94.2 0.027 9.4E-07 65.2 4.5 60 214-280 166-225 (349)
426 1azs_C GS-alpha; complex (lyas 94.1 0.025 8.6E-07 66.5 3.9 68 214-281 216-298 (402)
427 2g3y_A GTP-binding protein GEM 93.8 0.053 1.8E-06 58.0 5.4 66 216-281 88-159 (211)
428 2v3c_C SRP54, signal recogniti 93.8 0.094 3.2E-06 62.4 8.1 64 214-280 180-251 (432)
429 3dm5_A SRP54, signal recogniti 93.7 0.1 3.5E-06 61.9 8.0 66 214-281 182-253 (443)
430 2xtz_A Guanine nucleotide-bind 93.7 0.025 8.6E-07 65.5 2.7 67 215-281 183-264 (354)
431 4dzz_A Plasmid partitioning pr 93.5 0.11 3.7E-06 54.6 7.2 64 214-280 75-143 (206)
432 2ph1_A Nucleotide-binding prot 93.5 0.1 3.6E-06 57.5 7.3 66 214-279 128-194 (262)
433 3ohm_A Guanine nucleotide-bind 93.4 0.039 1.3E-06 63.0 3.7 67 215-281 167-248 (327)
434 1udx_A The GTP-binding protein 93.3 0.2 6.8E-06 59.2 9.6 67 215-281 205-283 (416)
435 1xe1_A Hypothetical protein PF 93.3 0.17 5.9E-06 48.0 7.2 48 809-872 49-97 (116)
436 2qag_C Septin-7; cell cycle, c 93.3 0.23 7.8E-06 58.8 10.1 62 239-311 139-201 (418)
437 3kl4_A SRP54, signal recogniti 93.2 0.11 3.7E-06 61.7 7.2 66 214-281 179-252 (433)
438 3c5h_A Glucocorticoid receptor 93.1 0.022 7.5E-07 62.9 1.0 43 238-280 162-211 (255)
439 3kl4_A SRP54, signal recogniti 92.9 0.041 1.4E-06 65.3 3.0 25 400-424 97-121 (433)
440 1oix_A RAS-related protein RAB 92.9 0.093 3.2E-06 54.7 5.4 66 216-281 79-148 (191)
441 2qag_B Septin-6, protein NEDD5 92.9 0.18 6.2E-06 59.5 8.4 40 241-281 151-190 (427)
442 1tev_A UMP-CMP kinase; ploop, 92.8 0.0054 1.8E-07 64.1 -4.4 90 617-707 88-177 (196)
443 2cjw_A GTP-binding protein GEM 92.5 0.074 2.5E-06 55.6 4.0 66 216-281 57-128 (192)
444 2qnr_A Septin-2, protein NEDD5 92.3 0.097 3.3E-06 59.2 4.9 22 402-423 20-41 (301)
445 2dby_A GTP-binding protein; GD 91.6 0.22 7.7E-06 57.8 6.9 37 214-250 68-111 (368)
446 1j8m_F SRP54, signal recogniti 91.4 0.088 3E-06 59.4 3.1 25 400-424 98-122 (297)
447 3bfv_A CAPA1, CAPB2, membrane 91.3 0.29 9.9E-06 54.4 7.2 66 215-281 192-258 (271)
448 2xxa_A Signal recognition part 91.2 0.23 7.9E-06 59.0 6.7 64 214-280 183-253 (433)
449 1hyq_A MIND, cell division inh 91.0 0.23 7.9E-06 54.5 6.0 65 214-280 110-175 (263)
450 2qnr_A Septin-2, protein NEDD5 90.6 0.65 2.2E-05 52.3 9.5 39 242-281 130-169 (301)
451 3cwq_A Para family chromosome 90.4 0.21 7E-06 53.2 4.8 65 214-280 67-133 (209)
452 1g3q_A MIND ATPase, cell divis 89.7 0.36 1.2E-05 51.9 6.1 66 214-281 111-177 (237)
453 3lh2_S 4E10_1VI7A_S0_002_N (T8 89.1 0.36 1.2E-05 42.6 4.4 62 1152-1216 9-70 (76)
454 3cio_A ETK, tyrosine-protein k 89.0 0.57 2E-05 52.8 7.3 66 215-281 214-280 (299)
455 1qf9_A UMP/CMP kinase, protein 88.9 0.025 8.6E-07 58.8 -3.8 79 617-696 85-163 (194)
456 2hf9_A Probable hydrogenase ni 88.5 0.21 7.3E-06 53.2 3.2 26 399-424 37-62 (226)
457 3ney_A 55 kDa erythrocyte memb 88.4 0.23 7.7E-06 52.5 3.2 26 400-425 19-44 (197)
458 3q9l_A Septum site-determining 88.4 0.39 1.3E-05 52.4 5.3 64 215-280 114-186 (260)
459 3kjh_A CO dehydrogenase/acetyl 88.3 0.27 9.2E-06 53.2 3.9 64 214-279 131-195 (254)
460 3ec1_A YQEH GTPase; atnos1, at 88.3 0.038 1.3E-06 64.5 -3.2 68 214-281 211-288 (369)
461 3k9g_A PF-32 protein; ssgcid, 88.2 0.64 2.2E-05 51.1 6.9 65 214-280 144-210 (267)
462 1wcv_1 SOJ, segregation protei 88.2 0.7 2.4E-05 50.6 7.1 65 214-280 111-182 (257)
463 2oze_A ORF delta'; para, walke 88.2 1.1 3.7E-05 50.1 8.8 65 214-280 154-225 (298)
464 1jal_A YCHF protein; nucleotid 88.0 0.28 9.7E-06 56.7 4.0 51 214-280 65-122 (363)
465 1ye8_A Protein THEP1, hypothet 87.6 0.27 9.1E-06 51.0 3.1 24 402-425 2-25 (178)
466 3la6_A Tyrosine-protein kinase 87.0 0.87 3E-05 50.9 7.1 66 215-281 202-268 (286)
467 3szr_A Interferon-induced GTP- 87.0 0.74 2.5E-05 57.2 7.1 124 399-526 44-220 (608)
468 2yhs_A FTSY, cell division pro 86.1 0.33 1.1E-05 58.2 3.1 24 401-424 294-317 (503)
469 1lvg_A Guanylate kinase, GMP k 85.6 0.37 1.3E-05 50.7 2.9 24 401-424 5-28 (198)
470 3l2o_B F-box only protein 4; s 85.6 1.6 5.3E-05 48.6 7.9 124 157-281 111-262 (312)
471 2qm8_A GTPase/ATPase; G protei 85.5 0.36 1.2E-05 55.4 3.0 60 214-280 147-206 (337)
472 3l82_B F-box only protein 4; T 85.5 1.4 4.9E-05 46.7 7.2 121 159-280 28-176 (227)
473 3ea0_A ATPase, para family; al 85.5 0.56 1.9E-05 50.6 4.4 66 214-281 118-186 (245)
474 4eun_A Thermoresistant glucoki 85.0 0.44 1.5E-05 50.0 3.1 26 400-425 29-54 (200)
475 1knq_A Gluconate kinase; ALFA/ 84.9 0.51 1.8E-05 48.1 3.5 25 401-425 9-33 (175)
476 2ffh_A Protein (FFH); SRP54, s 84.8 1.2 4E-05 52.7 7.0 64 214-280 180-250 (425)
477 2ffh_A Protein (FFH); SRP54, s 84.7 0.43 1.5E-05 56.5 3.2 25 400-424 98-122 (425)
478 1zp6_A Hypothetical protein AT 84.7 0.49 1.7E-05 49.0 3.3 23 401-423 10-32 (191)
479 3kb2_A SPBC2 prophage-derived 84.7 0.47 1.6E-05 48.0 3.1 24 401-424 2-25 (173)
480 3c8u_A Fructokinase; YP_612366 84.5 0.42 1.4E-05 50.6 2.8 24 401-424 23-46 (208)
481 1kag_A SKI, shikimate kinase I 84.4 0.48 1.7E-05 48.1 3.1 24 401-424 5-28 (173)
482 3sop_A Neuronal-specific septi 84.4 1.2 4.2E-05 49.2 6.6 62 239-311 112-174 (270)
483 1zu4_A FTSY; GTPase, signal re 84.4 1.5 5.1E-05 49.9 7.4 62 214-280 191-267 (320)
484 4ido_A Atlastin-1; GTPase, GTP 84.2 1.9 6.4E-05 51.1 8.3 81 397-480 64-150 (457)
485 3a00_A Guanylate kinase, GMP k 84.2 0.48 1.6E-05 49.2 2.9 24 401-424 2-25 (186)
486 3cm0_A Adenylate kinase; ATP-b 84.2 0.061 2.1E-06 55.7 -4.0 81 617-698 79-160 (186)
487 1kgd_A CASK, peripheral plasma 84.2 0.54 1.8E-05 48.5 3.3 24 401-424 6-29 (180)
488 1zak_A Adenylate kinase; ATP:A 84.1 0.069 2.3E-06 57.3 -3.7 79 616-697 85-185 (222)
489 4dzz_A Plasmid partitioning pr 84.1 0.78 2.7E-05 47.9 4.6 50 468-518 74-123 (206)
490 3tr0_A Guanylate kinase, GMP k 84.0 0.47 1.6E-05 49.7 2.8 23 402-424 9-31 (205)
491 3kjh_A CO dehydrogenase/acetyl 83.7 0.57 2E-05 50.5 3.4 57 468-524 130-186 (254)
492 3h2y_A GTPase family protein; 83.6 0.13 4.3E-06 60.0 -2.1 67 215-281 211-287 (368)
493 2bwj_A Adenylate kinase 5; pho 83.2 0.046 1.6E-06 57.2 -5.5 98 616-717 92-189 (199)
494 3end_A Light-independent proto 83.1 0.64 2.2E-05 52.3 3.7 65 214-279 156-225 (307)
495 1znw_A Guanylate kinase, GMP k 82.8 0.56 1.9E-05 49.5 2.9 23 402-424 22-44 (207)
496 1cke_A CK, MSSA, protein (cyti 82.6 0.68 2.3E-05 49.3 3.5 25 401-425 6-30 (227)
497 3asz_A Uridine kinase; cytidin 82.4 0.59 2E-05 49.3 2.8 24 401-424 7-30 (211)
498 3lw7_A Adenylate kinase relate 82.4 0.66 2.3E-05 46.7 3.1 59 617-682 80-138 (179)
499 2bbw_A Adenylate kinase 4, AK4 82.2 0.73 2.5E-05 50.0 3.6 89 617-709 106-220 (246)
500 1htw_A HI0065; nucleotide-bind 82.1 0.65 2.2E-05 47.1 2.9 23 402-424 35-57 (158)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=3.5e-118 Score=1151.89 Aligned_cols=733 Identities=34% Similarity=0.600 Sum_probs=595.0
Q ss_pred ccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccc
Q psy15088 384 VYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 384 ~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
.|+.+++.++|..++++|||+|+||+|||||||+++|++.++.+.+.. .++.+++|++++|++||+||+++.+++.|.
T Consensus 3 ~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 3 AFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEE
T ss_pred ccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEec
Confidence 578899999999999999999999999999999999999988776544 456789999999999999999999988884
Q ss_pred c-----------cCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 464 D-----------VKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 464 ~-----------~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
. ..++++.++|+|||||.++. ....+..+|++|+|+|+..|++.|+.++|..+...++|+++ ++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~il--viN 158 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVV--VIN 158 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEE--EEE
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEE--EEE
Confidence 1 23458999999999998765 34455677999999999999999999999998888888876 666
Q ss_pred hHHHHHHHHhhCC-----------ccCcHH--------------------------------------------------
Q psy15088 531 EPVYKLVAQVVGD-----------VDSSLP-------------------------------------------------- 549 (1291)
Q Consensus 531 ~~i~k~~d~~~~~-----------~~~~l~-------------------------------------------------- 549 (1291)
| +|....+ +...+.
T Consensus 159 ----K-~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~ 233 (842)
T 1n0u_A 159 ----K-VDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKF 233 (842)
T ss_dssp ----C-HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTT
T ss_pred ----C-CCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhc
Confidence 3 3433110 000011
Q ss_pred -----HHHHHh-C--------CC-----c------Chhhhh---cCc-hHHHHHHHhhccccccCCCccccccccccccc
Q psy15088 550 -----AVLDQL-G--------IH-----M------NKEESK---INI-RPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVK 600 (1291)
Q Consensus 550 -----~i~~~l-g--------~~-----l------~~~~~~---~~~-~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~ 600 (1291)
.+..++ | -. + .++.+. ..+ ..++.++..
T Consensus 234 ~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~----------------------- 290 (842)
T 1n0u_A 234 GVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMN----------------------- 290 (842)
T ss_dssp TSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHT-----------------------
T ss_pred CCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 111111 0 00 0 012221 111 123333322
Q ss_pred cCceEEcccccccccCceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhc-ccCCCCC-CCCCHHHH
Q psy15088 601 TSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKR-GAEGSGR-ADDNEESL 678 (1291)
Q Consensus 601 ~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~r-g~~~~~r-~dd~~e~i 678 (1291)
.++.+++++++. |.....+ .......|
T Consensus 291 ---------------------------------------------------~d~~~~e~~l~~~g~~l~~~e~~~~~~~l 319 (842)
T 1n0u_A 291 ---------------------------------------------------FKKDEIPVLLEKLEIVLKGDEKDLEGKAL 319 (842)
T ss_dssp ---------------------------------------------------TCTTHHHHHHHHTTCCCCGGGGGCCHHHH
T ss_pred ---------------------------------------------------cCHHHHHHHHHHcCCCCCHHHHhhhhHHH
Confidence 001122222221 1000000 00011222
Q ss_pred HHHHhhccccccceEEeecchhhhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCccccccc
Q psy15088 679 KKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVH 758 (1291)
Q Consensus 679 ~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 758 (1291)
++.+ .+. +++.++.|||+|++++|||.+++++|...+|.|+.
T Consensus 320 ~~~~---~~~---------------~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~-------------------- 361 (842)
T 1n0u_A 320 LKVV---MRK---------------FLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPA-------------------- 361 (842)
T ss_dssp HHHH---HHH---------------HSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCT--------------------
T ss_pred HHHH---Hhh---------------ccchHHHHHHHHHHhCCChhHhcccccccccCCcc--------------------
Confidence 2222 112 23447999999999999999998888888888753
Q ss_pred ccccccccccccccCCCCCchhhhhhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCc
Q psy15088 759 SSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDE 838 (1291)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~ 838 (1291)
+++....+..||+++|++++|||+..+++.|++++|+|||||+|++||+|++++++|++...
T Consensus 362 ------------------~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~ 423 (842)
T 1n0u_A 362 ------------------DDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKK 423 (842)
T ss_dssp ------------------TSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSC
T ss_pred ------------------cccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCC
Confidence 23334566789999999999999999998887899999999999999999999999876544
Q ss_pred ccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCC
Q psy15088 839 EDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSE 918 (1291)
Q Consensus 839 ~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d 918 (1291)
.+...++|++|++++|++++++++|+|||||+|.|++++.++++|+++. ..+.+|.++.++.+|+++++|||+++.|
T Consensus 424 ~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~---~~~~~l~~~~~~~~Pv~~~avep~~~~d 500 (842)
T 1n0u_A 424 DDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTS---ETAHNMKVMKFSVSPVVQVAVEVKNAND 500 (842)
T ss_dssp TTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESC---TTCCCBCCCCCCCSCCEEEEEEESSGGG
T ss_pred cccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCC---CCccccccCCCCCCceEEEEEEECCHHH
Confidence 3334789999999999999999999999999999999988888899874 2456788888876799999999999999
Q ss_pred hhHHHHHHHHHHHhCCceeEEECcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecC
Q psy15088 919 LPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETP 998 (1291)
Q Consensus 919 ~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~ 998 (1291)
++||.+||++|+++||++++..+||||++|+||||||||||++||+++|+|+++++|+|+|+|||||++++...++.+++
T Consensus 501 ~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~~~~~~~~~~~~~ 580 (842)
T 1n0u_A 501 LPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSP 580 (842)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEESSCCSSCEEEECT
T ss_pred HHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeeccccccceeeccC
Confidence 99999999999999999999988999999999999999999999999997799999999999999999999888889999
Q ss_pred CcceEEEEEEeecCcccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhh
Q psy15088 999 NKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLL 1078 (1291)
Q Consensus 999 nk~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~ 1078 (1291)
++|++++++++|+++++...++.+.+...++.+.+++.|.++|+||.+.+++||+|||+..|+|+|+|.+.+. .++
T Consensus 581 ~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~~~~g~----~~~ 656 (842)
T 1n0u_A 581 NKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAV----QYL 656 (842)
T ss_dssp TSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEECCCCC----TTH
T ss_pred CcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEecCCCc----ccc
Confidence 9999999999999998888888887777778888899999999999999999999999999999999987654 378
Q ss_pred hhHHHHHHHHHHHhhhcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEec
Q psy15088 1079 GSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAP 1158 (1291)
Q Consensus 1079 ~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p 1158 (1291)
++++++|.+||+||+++||||||||+||+|+|.|+++|.+..|+++||+++|+++||++|+++|+|+||||||.|+|+||
T Consensus 657 ~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP 736 (842)
T 1n0u_A 657 HEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCP 736 (842)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEeeEEEEEEEcc
Confidence 89999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccC
Q psy15088 1159 ADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIR 1238 (1291)
Q Consensus 1159 ~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~ 1238 (1291)
++++|+||++|++|||+|+++++..|+++++|+|++|++|||||+++||++|+|+|+|+|.|+||+++|+||++.+
T Consensus 737 ~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~~~~~---- 812 (842)
T 1n0u_A 737 EQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPT---- 812 (842)
T ss_dssp GGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCTTCTT----
T ss_pred HHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCccchh----
Confidence 9999999999999999999988877878999999999999999999999999999999999999999999999753
Q ss_pred CCCCCCcccHHHHHHHHHhhccCCCCCC-CccccCCH
Q psy15088 1239 PLEPQPATHLAREFMIKTRRRKGLSEDV-SINKFFDD 1274 (1291)
Q Consensus 1239 ~~~~~~~~~~a~~~~~~iR~rKGl~~~~-~~~~~~d~ 1274 (1291)
|+|++||++|||||||++++ ++++|+|+
T Consensus 813 --------~~a~~~~~~~R~rKGl~~~~p~~~~~~d~ 841 (842)
T 1n0u_A 813 --------SKAGEIVLAARKRHGMKEEVPGWQEYYDK 841 (842)
T ss_dssp --------SHHHHHHHHHHHHTTCCSSCCCGGGGCCC
T ss_pred --------hHHHHHHHHHHHhCCCCCCCCCHHHhccC
Confidence 99999999999999999999 79999995
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.6e-107 Score=1033.82 Aligned_cols=671 Identities=20% Similarity=0.281 Sum_probs=515.0
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccC--CCCeEEEEE
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK--GKNYLMNIF 475 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~--~~~~~~~li 475 (1291)
++||||||+||+|||||||+++||+.+|.+...+.++++.++||++++||+|||||+++.++|.|.... .++|.||||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 789999999999999999999999999988777788899999999999999999999999999996443 358999999
Q ss_pred eCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHH
Q psy15088 476 DTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLD 553 (1291)
Q Consensus 476 DTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~ 553 (1291)
|||||.+|. .-+++..+|+||+|||+.+|+++||+++|+++...++|+++ ||| | +|+...+++..+.++..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~--~iN----K-iDr~~a~~~~~~~ei~~ 163 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIV--YVN----K-MDRQGANFLRVVEQIKK 163 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEE--EEE----C-SSSTTCCHHHHHHHHHH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEE--EEc----c-ccccCccHHHHHHHhhh
Confidence 999998774 23333344799999999999999999999999999999987 998 6 78887777777777777
Q ss_pred HhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccC------ceeecCCCCcc
Q psy15088 554 QLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSN------KFLIDGFPRNQ 627 (1291)
Q Consensus 554 ~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~------~~liDGfPr~~ 627 (1291)
+++.... .-++|++.+..| .+++|+++++.+.|. .|-...+|...
T Consensus 164 ~l~~~~~-------------------~~~~pi~~~~~~----------~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~ 214 (709)
T 4fn5_A 164 RLGHTPV-------------------PVQLAIGAEENF----------VGQVDLIKMKAIYWNDDDKGMTYREEEIPAEL 214 (709)
T ss_dssp HHCSCEE-------------------ESEEEESSSTTC----------CEEEETTTTEEEEEEC--CCCEEEECCCCHHH
T ss_pred hccccee-------------------eeecccCchhcc----------ceEEEEeeeeEEEeecccCCceeccccccHHH
Confidence 7654211 235677766544 467888888665432 12222333221
Q ss_pred -CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhh
Q psy15088 628 -NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKR 704 (1291)
Q Consensus 628 -~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~ 704 (1291)
..+..|+..+.+.+ .+ .++.+++++++.+ +.+.+.++..+ ......+.||+++++.++
T Consensus 215 ~~~~~~~~~~~~e~~-------~~-~d~~l~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~---- 275 (709)
T 4fn5_A 215 KDLAEEWRSSMVEAA-------AE-ANEELMNKYLEEG-------ELSEAEIKEGLRLRTLACEIVPAVCGSSFKN---- 275 (709)
T ss_dssp HHHHHHHHHHHHHHH-------HT-SSHHHHHHHHHHS-------CCCHHHHHHHHHHHHHTTSCEEEEECBTTTT----
T ss_pred HHHHHHHHHHHHHHH-------Hh-ccHHHHHHHHhcC-------CccHHHHHHHHHHhhhhceeeeeeeeecccC----
Confidence 22344555444432 22 3456777777654 35666777655 557789999999999999
Q ss_pred hchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhh
Q psy15088 705 FNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDM 784 (1291)
Q Consensus 705 ~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1291)
.|++.|||+|++++|+|.+++..+. +.. +++.....
T Consensus 276 -~gv~~lLd~i~~~lPsP~~~~~~~~-----~~~--------------------------------------~~~~~~~~ 311 (709)
T 4fn5_A 276 -KGVPLVLDAVIDYLPAPTEIPAIKG-----VSP--------------------------------------DDETVEDE 311 (709)
T ss_dssp -BTHHHHHHHHHHHSCCTTSSCCEEC-----BCC--------------------------------------C-CCSCCE
T ss_pred -CchHHHHHHHHhhCCCCcccccccc-----cCC--------------------------------------cccccccc
Confidence 8999999999999999998664331 111 12223455
Q ss_pred hccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceee
Q psy15088 785 KACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVP 864 (1291)
Q Consensus 785 ~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~ 864 (1291)
.+||+++|++++|||+..+++.|+ ++|+|||||+|++||+|++..+ ++.++|++++.++|++++++++|+
T Consensus 312 ~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sGtl~~G~~v~~~~~---------~~~~~v~~l~~~~g~~~~~v~~~~ 381 (709)
T 4fn5_A 312 RHADDNEPFSSLAFKIATDPFVGT-LTFARVYSGVLSSGDSVLNSVK---------GKKERVGRMVQMHANQREEIKEVR 381 (709)
T ss_dssp ECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEESCEETTCBCBCTTT---------CCCCBCCCEECCCSSCCCEESEEC
T ss_pred ccCCccCcceEEEEEeecccCCCc-eEEEeccCCCCCCCCEEEEecC---------CcEEeecceeEeecceeeEeeeec
Confidence 779999999999999999998764 9999999999999999987653 345789999999999999999999
Q ss_pred CCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcC
Q psy15088 865 AGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EES 943 (1291)
Q Consensus 865 aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~et 943 (1291)
|||||+|.|+++.. +++|+++.. ....+.+++++ +|+++++|||.+++|++||.+||++|+++||+++++. ++|
T Consensus 382 aGdIv~i~Gl~~~~-~gdTl~~~~---~~~~~~~~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eet 456 (709)
T 4fn5_A 382 AGDIAALIGMKDVT-TGDTLCSIE---KPIILERMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEES 456 (709)
T ss_dssp TTCEEEECSCSSCC-TTCEEECSS---SCCBCC----C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTT
T ss_pred CCCeeeecCCCcCc-cCCEecCCC---ccccCCCCCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCC
Confidence 99999999998854 588998752 34566777885 8999999999999999999999999999999999986 899
Q ss_pred CcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccc---eeeeecCC--cceEEEEEEeecCcccccc
Q psy15088 944 GEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSL---KCFAETPN--KRNKITMIAEPLEKGLAED 1018 (1291)
Q Consensus 944 Ge~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~---~~~~~s~n--k~~~i~~~~ePl~~~~~~~ 1018 (1291)
||++|+|+||||||||++||+++| |+++++|+|+|+|||||++.+.. ++..++.+ +++.+++.
T Consensus 457 ge~vi~g~GELHLei~l~rLr~e~-gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~----------- 524 (709)
T 4fn5_A 457 GQTIISGMGELHLDIIVDRMKREF-GVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIR----------- 524 (709)
T ss_dssp TEEEEEESCHHHHHHHHHHHHTTT-CCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEE-----------
T ss_pred CcEEEEEECHHHHHHHHHHHHHHh-CceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEE-----------
Confidence 999999999999999999999999 79999999999999999875432 12222222 12344444
Q ss_pred cccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCcc
Q psy15088 1019 IENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPL 1098 (1291)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL 1098 (1291)
+....+|.+||... .+.|.|.+.... +.+++.++|.+||+||+++|||
T Consensus 525 ---------------------------~~~~~~~e~g~~~~-~~~f~~~~~~~~----~p~~~~~~v~~g~~~a~~~G~l 572 (709)
T 4fn5_A 525 ---------------------------FSAADVDEKGNITE-GLVFENEVVGGV----VPKEYIPAIQKGIEEQMKNGVV 572 (709)
T ss_dssp ---------------------------EECCCBC-CCCBCC-EEEEEECC-CCS----SCGGGHHHHHHHHHHHHHHCSS
T ss_pred ---------------------------EeeccccccCCCcC-ceEEeccccccc----CCHHHHHHHHHHHHHHHhcCcc
Confidence 44455677776543 355555543332 2345567899999999999999
Q ss_pred CCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEee
Q psy15088 1099 CEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQ 1178 (1291)
Q Consensus 1099 ~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~ 1178 (1291)
|||||+||+|+|.|+.+|.++.+++..| .++++||++|+++|+|+||||||.|+|+||++++|.||++|++|||+|++
T Consensus 573 ~g~pv~~v~v~l~dg~~h~~~s~~~~f~--~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~ 650 (709)
T 4fn5_A 573 AGYPLIGLKATVFDGSYHDVDSNEMAFK--IAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQG 650 (709)
T ss_dssp SSCCBSEEEEEEEECCCCTTTBCHHHHH--HHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEE
T ss_pred cCCceeeeEEEEEEccccCCCCChHHHH--HHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEec
Confidence 9999999999999999998876654444 46899999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCC
Q psy15088 1179 DAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDP 1230 (1291)
Q Consensus 1179 ~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp 1230 (1291)
+++.. +..+|+|++|++|||||+++||++|+|+|+|+|.|+||++||+|+
T Consensus 651 ~~~~~--~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~ 700 (709)
T 4fn5_A 651 MEDTV--SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNI 700 (709)
T ss_dssp EEECS--SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHH
T ss_pred eEecC--CCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCH
Confidence 77654 467899999999999999999999999999999999999999753
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.4e-96 Score=931.92 Aligned_cols=669 Identities=20% Similarity=0.283 Sum_probs=538.3
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc--cCCCCeEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD--VKGKNYLMN 473 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~~~~~~~~ 473 (1291)
.++++|||+|+||+|||||||+++|++.++.+...+.++.+.+++|+++.|++||+|+++...++.|.+ ..++.+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 457889999999999999999999999888776666666778999999999999999999999999843 233459999
Q ss_pred EEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHH
Q psy15088 474 IFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAV 551 (1291)
Q Consensus 474 liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i 551 (1291)
|||||||.+|. ..+++..+|++|+|+|+..|+..|+.++|+.+...++|.++ |+| | +|....+.+..+.++
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~il--viN----K-iD~~~~~~~~~~~~l 158 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIA--FVN----K-MDRMGANFLKVVNQI 158 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEE--EEe----C-CCcccccHHHHHHHH
Confidence 99999998654 34455677999999999999999999999999888999876 777 5 676555555555555
Q ss_pred HHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc------eeecCCCC
Q psy15088 552 LDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK------FLIDGFPR 625 (1291)
Q Consensus 552 ~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~------~liDGfPr 625 (1291)
...++.. .+ +.|+|++....| .+++|++.++.+.|.. |-....|.
T Consensus 159 ~~~l~~~-----------~~--------~~~~Pi~~~~~f----------~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~ 209 (704)
T 2rdo_7 159 KTRLGAN-----------PV--------PLQLAIGAEEHF----------TGVVDLVKMKAINWNDADQGVTFEYEDIPA 209 (704)
T ss_pred HHHhCCC-----------ce--------eEEccccccccc----------cceeehhhhhhhcccCccCCcceEEecCCH
Confidence 5554421 11 236788765544 4789999887654321 11111222
Q ss_pred cc-CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhh
Q psy15088 626 NQ-NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLV 702 (1291)
Q Consensus 626 ~~-~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~ 702 (1291)
.. ..+..++..+.+. ..+. ++.+++++++.. +.+.+.+++.+ ....+...||+|+|+.++
T Consensus 210 ~~~~~~~~~~~~l~e~-------~ae~-dd~l~e~~l~~~-------~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~-- 272 (704)
T 2rdo_7 210 DMVELANEWHQNLIES-------AAEA-SEELMEKYLGGE-------ELTEAEIKGALRQRVLNNEIILVTCGSAFKN-- 272 (704)
T ss_pred HHHHHHHHHHHHHHHH-------HHhc-CHHHHHHHhcCC-------CCCHHHHHHHHHHHHHhCCeeEEEEeecccC--
Confidence 11 1223334333332 2333 456777888632 46677777766 445678999999999999
Q ss_pred hhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhh
Q psy15088 703 KRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVAR 782 (1291)
Q Consensus 703 ~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1291)
.|++.|||+|++++|+|.++++++. + ++. .+. ..
T Consensus 273 ---~Gv~~LLd~i~~~lPsP~~~~~~~~---~-~~~--------------------------------------~~~-~~ 306 (704)
T 2rdo_7 273 ---KGVQAMLDAVIDYLPSPVDVPAING---I-LDD--------------------------------------GKD-TP 306 (704)
T ss_pred ---ccHHHHHHHHHHHCCChhhcccccc---c-CCc--------------------------------------ccc-cc
Confidence 8999999999999999998765432 1 100 000 12
Q ss_pred hhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeece
Q psy15088 783 DMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNR 862 (1291)
Q Consensus 783 ~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~ 862 (1291)
....||+++|++++|||++.+++.|+ ++|+|||||+|++||+|++.+ .++.++|++|+.++|++.+++++
T Consensus 307 ~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV~sG~l~~g~~v~~~~---------~~~~~~v~~l~~~~g~~~~~v~~ 376 (704)
T 2rdo_7 307 AERHASDDEPFSALAFKIATDPFVGN-LTFFRVYSGVVNSGDTVLNSV---------KAARERFGRIVQMHANKREEIKE 376 (704)
T ss_pred cccccCCCCceEEEEEEEEEcCCCce-EEEEEEEeeeecCCCEEEeCC---------CCcEEEeceEEEEeCCCceEcce
Confidence 34568899999999999999998766 899999999999999999765 24678999999999999999999
Q ss_pred eeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-C
Q psy15088 863 VPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-E 941 (1291)
Q Consensus 863 a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~ 941 (1291)
|+|||||+|.|++++ .+++||++. ..+.+|.++.++ +|+++++|+|++++|++||.+||++|+++||++++.. +
T Consensus 377 ~~aGdIv~i~gl~~~-~~GdTl~~~---~~~~~l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~ 451 (704)
T 2rdo_7 377 VRAGDIAAAIGLKDV-TTGDTLCDP---DAPIILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDE 451 (704)
T ss_pred eCCCCEEEEeCcccC-ccCCEEeCC---CcccccCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcC
Confidence 999999999999987 447899875 235578888885 8999999999999999999999999999999999998 8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecc-cceee--eec--CCcceEEEEEEeec---Cc
Q psy15088 942 ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETS-SLKCF--AET--PNKRNKITMIAEPL---EK 1013 (1291)
Q Consensus 942 etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~-~~~~~--~~s--~nk~~~i~~~~ePl---~~ 1013 (1291)
||||++|+||||||||||++||+++| ++++++++|+|+|||||++++ +.... .++ .+++++++++++|+ ++
T Consensus 452 etge~il~g~GelhLei~~~rL~~~f-~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~ 530 (704)
T 2rdo_7 452 ESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSN 530 (704)
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCC
Confidence 99999999999999999999999999 799999999999999999776 54332 233 34568999999999 55
Q ss_pred ccccccccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhh
Q psy15088 1014 GLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGT 1093 (1291)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~ 1093 (1291)
+.+ |.|+|.+.... +.++++++|.+||+||+
T Consensus 531 g~g---------------------------------------------~~f~~~~~g~~----~p~~~~~~v~~g~~~a~ 561 (704)
T 2rdo_7 531 PKG---------------------------------------------YEFINDIKGGV----IPGEYIPAVDKGIQEQL 561 (704)
T ss_pred CCC---------------------------------------------cEEEEeccCCc----CcHHHHHHHHHHHHHHH
Confidence 432 22222221111 23457789999999999
Q ss_pred hcCccCCCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccC
Q psy15088 1094 REGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRR 1173 (1291)
Q Consensus 1094 ~~GPL~~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RR 1173 (1291)
++||||||||+||+|+|.|+.+|.++ .+.+++..|+++||++|+++|+|+||||||.|+|+||++++|.||++|++||
T Consensus 562 ~~G~l~g~pv~~v~v~l~dg~~h~~d--s~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rr 639 (704)
T 2rdo_7 562 KAGPLAGYPVVDMGIRLHFGSYHDVD--SSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRR 639 (704)
T ss_pred hcCCcCCCceeeEEEEEEeccccCCC--CcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCC
Confidence 99999999999999999999999754 3456789999999999999999999999999999999999999999999999
Q ss_pred cEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcC
Q psy15088 1174 GHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 1232 (1291)
Q Consensus 1174 G~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~ 1232 (1291)
|+|+++++.. +.++|+|++|++|+|||+++||+.|+|+|+|+|.|+||+++|+++++
T Consensus 640 G~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~ 696 (704)
T 2rdo_7 640 GMLKGQESEV--TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQ 696 (704)
T ss_pred ceEeCceecC--CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHH
Confidence 9999988765 47999999999999999999999999999999999999999987653
No 4
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=3.7e-100 Score=959.03 Aligned_cols=630 Identities=19% Similarity=0.266 Sum_probs=512.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+||||||+||+|||||||+++||+.+|.+...+.+++++++||++++||+|||||+++.++|.| +++.|||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-----~~~~iNlIDTP 75 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-----ENTKVNIIDTP 75 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-----SSCBCCCEECC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-----CCEEEEEEECC
Confidence 6899999999999999999999999999988888999999999999999999999999999999 89999999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhC
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLG 556 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg 556 (1291)
||.+|. ..+++..+|+||+|+||.+|+++||+++|+++...++|+++ ||| | +|+...+++..+.++.++|+
T Consensus 76 GH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~--~IN----K-mDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 76 GHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIF--FIN----K-IDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp CSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEE--CCE----E-CCSSSCCSHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEE--EEe----c-cccccCCHHHHHHHHHHHhC
Confidence 998775 34444455899999999999999999999999999999987 898 6 78888887777777777665
Q ss_pred CCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHH
Q psy15088 557 IHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKE 636 (1291)
Q Consensus 557 ~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~ 636 (1291)
..+... + .+++... .....+.+ . ...+.
T Consensus 149 ~~~~~~-------------------~---------------------~~~~~~~-------~~~~~~~~----~-~~~e~ 176 (638)
T 3j25_A 149 AEIVIK-------------------Q---------------------KVELYPN-------VCVTNFTE----S-EQWDT 176 (638)
T ss_dssp CCCCCC-------------------C---------------------CCCSCGG-------GCCCCCCC----H-HHHHH
T ss_pred CCcccc-------------------c---------------------eeEeecc-------ccccccch----h-hhhhh
Confidence 421100 0 0000000 00011111 1 11122
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHH--HHhhccccccceEEeecchhhhhhhchhHHHHHH
Q psy15088 637 MADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKK--RISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714 (1291)
Q Consensus 637 l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~--rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~ 714 (1291)
+.+. ++.++++++.... .....+.. +.......+.||+|+|+.++ .|++.|||+
T Consensus 177 ~~e~------------~d~l~e~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~-----~Gv~~LLd~ 232 (638)
T 3j25_A 177 VIEG------------NDDLLEKYMSGKS-------LEALELEQEESIRFQNCSLFPLYHGSAKSN-----IGIDNLIEV 232 (638)
T ss_dssp HHHH------------HCHHHHHHHHHCC-------CCSHHHHHHHHHHHHHTSCCCCCCCCSTTC-----CSHHHHHHH
T ss_pred hhcc------------cHHHHhhhccCCc-------cchHHHHHHHhhhhcccccccccccccccC-----CCchhHhhh
Confidence 2221 1234555554321 22223333 23445678899999999999 899999999
Q ss_pred HHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeE
Q psy15088 715 CVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLM 794 (1291)
Q Consensus 715 Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~ 794 (1291)
|++++|+|... +.+|+.
T Consensus 233 i~~~~p~p~~~---------------------------------------------------------------~~~~~~ 249 (638)
T 3j25_A 233 ITNKFYSSTHR---------------------------------------------------------------GPSELC 249 (638)
T ss_dssp HHHSCCCSGGG---------------------------------------------------------------SCCCCC
T ss_pred hhccccCcccc---------------------------------------------------------------hhhhhc
Confidence 99999999642 124788
Q ss_pred EEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccC
Q psy15088 795 VHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGI 874 (1291)
Q Consensus 795 ~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl 874 (1291)
++|||+..+++.|+ ++|+|||||+|++||+|++.+. ...+|.+++.++|++++++++|+|||||++.|.
T Consensus 250 ~~Vfk~~~d~~~G~-la~~RV~sG~l~~g~~v~~~~~----------~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~ 318 (638)
T 3j25_A 250 GNVFKIEYTKKRQR-LAYIRLYSGVLHLRDSVRVSEK----------EKIKVTEMYTSINGELCKIDRAYSGEIVILQNE 318 (638)
T ss_dssp BEEBCCCCCSTTCC-CCBCCBSSBCCCSCCCSSSCCC----------CCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSS
T ss_pred ceeeeeeeeccCce-EEEEEEEcCcccCCCccccccC----------cceeEEeeecccccccccccccccceEEEEecc
Confidence 99999999998765 9999999999999999987542 235789999999999999999999999999883
Q ss_pred CCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCcEEEEecch
Q psy15088 875 DQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGE 953 (1291)
Q Consensus 875 ~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe~ii~g~GE 953 (1291)
.. ..++|+++. ...+.+.++.+ ++|+++++|+|.+++|++||.+||++|+++||+++++. ++|||++|+||||
T Consensus 319 ~~--~~~~tl~d~---~~~~~~~~i~~-p~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~Ge 392 (638)
T 3j25_A 319 FL--KLNSVLGDT---KLLPQRKKIEN-PHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGK 392 (638)
T ss_dssp SC--SSEECSSSS---SSGGGCSCCCC-CCCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSH
T ss_pred cc--ccCceecCC---CCcccccCccC-CCccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccH
Confidence 22 224455543 23445555666 48999999999999999999999999999999999987 7899999999999
Q ss_pred hHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCC--cceEEEEEEeecCcccccccccceeccccchh
Q psy15088 954 LYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPN--KRNKITMIAEPLEKGLAEDIENQIVHIAWNKK 1031 (1291)
Q Consensus 954 LHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~n--k~~~i~~~~ePl~~~~~~~~~~~~~~~~~~~~ 1031 (1291)
|||||+++||+++| |+++++|+|+|+|||||++.++.++..++++ .++++++.++|++.+.+..+++.+.
T Consensus 393 LHLei~~~rL~~ef-gvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~~~~~------- 464 (638)
T 3j25_A 393 VQMEVISALLQEKY-HVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVS------- 464 (638)
T ss_dssp HHHHHHHHHHTTTT-CCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSSCCCCCCCCCC-------
T ss_pred HHHHHHHHHHHHHh-CCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCCCCcEEEeeee-------
Confidence 99999999999999 8999999999999999999887766555543 4589999999999887665543221
Q ss_pred HHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceeeEEEEE
Q psy15088 1032 RLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIL 1111 (1291)
Q Consensus 1032 ~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv~~~l~ 1111 (1291)
.+.+|+ ++.++|.+||+||+++| |||+||+||+|+|.
T Consensus 465 ----------------------------------~~~~~~--------~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~ 501 (638)
T 3j25_A 465 ----------------------------------LGYLNQ--------SFQNAVMEGIRYGCEQG-LYGWNVTDCKICFK 501 (638)
T ss_dssp ----------------------------------SSSTTH--------HHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCC
T ss_pred ----------------------------------cccchh--------hhhhHHhhhHHHHHhcc-ccCCcccceEEEEE
Confidence 123343 45578999999999999 99999999999999
Q ss_pred EeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEE
Q psy15088 1112 DAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIK 1191 (1291)
Q Consensus 1112 d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~ 1191 (1291)
|+.+|.. +++.+++..++++||++|+++|+|+||||||.|+|+||++++|.|+++|++|||+|+++++.. +.++|+
T Consensus 502 dg~~h~~--~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~ 577 (638)
T 3j25_A 502 YGLYYSP--VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILS 577 (638)
T ss_dssp CCCCSSC--SCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEE
T ss_pred ECcccCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEE
Confidence 9999965 456778999999999999999999999999999999999999999999999999999877643 579999
Q ss_pred EecccccccCchHHHhhccccceEeeecccceeecCCCCcCcccccCCCCCCCcccHHHHHHHHH
Q psy15088 1192 AFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKT 1256 (1291)
Q Consensus 1192 a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~~~~~~~~~~~~~~~~~a~~~~~~i 1256 (1291)
|++|++|||||+++||++|+|+|+|+|.|+||+++|+||++++ .++.+..+.+|-++.||
T Consensus 578 a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~~~~-----~~~~~~~d~~~~~~~k~ 637 (638)
T 3j25_A 578 GEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQP-----RRPNSRIDKVRYMFNKI 637 (638)
T ss_dssp CCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCSCCC-----CCCCCCHHHHHHHHHHH
T ss_pred EEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCccccc-----cCCCChhhHHHHHHhcc
Confidence 9999999999999999999999999999999999999999875 34455567777777665
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-95 Score=922.47 Aligned_cols=662 Identities=21% Similarity=0.303 Sum_probs=509.4
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
++++|||+|+||+|+|||||+++|++..+.+...+.+..+.+++|+.+.|++||+|+.+...++.| +++.++|+|
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-----~~~~i~liD 81 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-----EGHRVNIID 81 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-----TTEEEEEEC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-----CCeeEEEEE
Confidence 467899999999999999999999988777655555566788999999999999999999999998 789999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHH
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ 554 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~ 554 (1291)
||||.++. ....+..+|++|+|+|+..+++.|+..+|..+...++|.++ ++| | +|....+....+..+...
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~il--viN----K-~Dl~~~~~~~~~~~l~~~ 154 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV--FVN----K-MDKLGANFEYSVSTLHDR 154 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE--EEE----C-TTSTTCCHHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEE--EEE----C-CCccccchHHHHHHHHHH
Confidence 99997654 34455668999999999999999999999999888999876 777 5 565443322233333333
Q ss_pred hCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccC-----ceeecCCCCcc-C
Q psy15088 555 LGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSN-----KFLIDGFPRNQ-N 628 (1291)
Q Consensus 555 lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~-----~~liDGfPr~~-~ 628 (1291)
++.. . -..++|++.+..+ .+++|++.+..+.|. .+.....|... .
T Consensus 155 l~~~---------~----------~~~~ipisa~~~~----------~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (693)
T 2xex_A 155 LQAN---------A----------APIQLPIGAEDEF----------EAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLD 205 (693)
T ss_dssp HCCC---------E----------EESEEEECCGGGC----------CEEEETTTTEEEECCSSSSCSCEEECCCGGGHH
T ss_pred hCCC---------c----------eeEEeecccCCCc----------ceeeeeecceeEEeccCCCceeEEecCCHHHHH
Confidence 3221 0 1235777765444 367888876544322 12222333221 1
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhc
Q psy15088 629 NLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFN 706 (1291)
Q Consensus 629 qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~ 706 (1291)
.++.++.++.+.+ .+ .++.+++++++.. ..+.+.+++.+ ......+.||+|+|+.++ .
T Consensus 206 ~~e~~r~~l~e~l-------~e-~dd~l~e~~l~~~-------~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~-----~ 265 (693)
T 2xex_A 206 RAEEARASLIEAV-------AE-TSDELMEKYLGDE-------EISVSELKEAIRQATTNVEFYPVLCGTAFKN-----K 265 (693)
T ss_dssp HHHHHHHHHHHHH-------HT-TCHHHHHHHHTTC-------CCCHHHHHHHHHHHHHTTSCEEEEECBTTTT-----B
T ss_pred HHHHHHHHHHHHH-------hh-CCHHHHHHHhcCC-------CCCHHHHHHHHHHHHHhCCeeeEEEeecccC-----c
Confidence 2344444444432 22 3456778888732 35667777655 446678999999999999 8
Q ss_pred hhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhc
Q psy15088 707 AEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKA 786 (1291)
Q Consensus 707 g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1291)
|++.|||+|++++|+|.++++++. + ++. ++ -...+..
T Consensus 266 Gv~~LLd~i~~~lPsP~~~~~~~~---~-~~~--------------------------------------~~-~~~~~~~ 302 (693)
T 2xex_A 266 GVQLMLDAVIDYLPSPLDVKPIIG---H-RAS--------------------------------------NP-EEEVIAK 302 (693)
T ss_dssp SHHHHHHHHHHHSCCGGGSCCEEE---E-ETT--------------------------------------EE-EEEEEEC
T ss_pred CHHHHHHHHHHHCCCchhcccccc---c-CCC--------------------------------------cc-ccceeec
Confidence 999999999999999998765432 1 111 00 0123567
Q ss_pred cCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCC
Q psy15088 787 CNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866 (1291)
Q Consensus 787 ~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aG 866 (1291)
||+++|++++|||++.+++.|+ ++|+|||||+|++||+|++.. .++.++|++|++++|++++++++|+||
T Consensus 303 ~~~~~p~~a~VfK~~~d~~~g~-~~~~RV~sG~l~~g~~v~~~~---------~~~~~~v~~l~~~~g~~~~~v~~~~aG 372 (693)
T 2xex_A 303 ADDSAEFAALAFKVMTDPYVGK-LTFFRVYSGTMTSGSYVKNST---------KGKRERVGRLLQMHANSRQEIDTVYSG 372 (693)
T ss_dssp SCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEEETTEEEEETT---------TTEEEEECCEEEECSSCEEECSEEETT
T ss_pred CCCCCceEEEEEEeeecCCCce-EEEEEEEeeeEecCCEEEecC---------CCceEEeceEEEEeCCCceEccccCcC
Confidence 8999999999999999998765 899999999999999999764 346789999999999999999999999
Q ss_pred CeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCc
Q psy15088 867 NWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGE 945 (1291)
Q Consensus 867 nIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe 945 (1291)
|||++.|++++.+ ++||++.. .+.+|.++.++ +|+++++|+|++++|++||.+||++|+++||++++.. +||||
T Consensus 373 dI~~i~gl~~~~~-GdTl~~~~---~~~~~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e 447 (693)
T 2xex_A 373 DIAAAVGLKDTGT-GDTLCGEK---NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQ 447 (693)
T ss_dssp CEEEEESCSSCCT-TCEEEETT---CCEECCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCC
T ss_pred CEEEEeCcccCcc-CCEEecCC---CccccCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCc
Confidence 9999999998754 78998752 35678889986 7999999999999999999999999999999999997 89999
Q ss_pred EEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceee--eecC--CcceEEEEEEeecCccccccccc
Q psy15088 946 HVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF--AETP--NKRNKITMIAEPLEKGLAEDIEN 1021 (1291)
Q Consensus 946 ~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~--~~s~--nk~~~i~~~~ePl~~~~~~~~~~ 1021 (1291)
++|+||||||||||++||+++| |+++++++|+|+|||||++++..... .++. +++++++++++|++++.+..+.+
T Consensus 448 ~il~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~ 526 (693)
T 2xex_A 448 VIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFEN 526 (693)
T ss_dssp EEEEESSHHHHHHHHHHHHHHS-CCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEe
Confidence 9999999999999999999999 79999999999999999987765332 2332 34589999999999865433322
Q ss_pred ceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCC
Q psy15088 1022 QIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 1101 (1291)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~e 1101 (1291)
.+ +.+.+| ++++++|.+||+||+++|||||+
T Consensus 527 ~~-----------------------------------------~g~~~p--------~~~~~~v~~g~~~a~~~G~l~g~ 557 (693)
T 2xex_A 527 AI-----------------------------------------VGGVVP--------REYIPSVEAGLKDAMENGVLAGY 557 (693)
T ss_dssp CC-----------------------------------------CTTSSC--------GGGHHHHHHHHHHHHHTCSSSSC
T ss_pred cC-----------------------------------------CCCcCC--------HHHHHHHHHHHHHHHhcCCccCC
Confidence 11 012233 34678899999999999999999
Q ss_pred CceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccc
Q psy15088 1102 PIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAP 1181 (1291)
Q Consensus 1102 pv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~ 1181 (1291)
||+||+|+|.|+.+|..+ .+.+++..|+++||++|+++|+|+||||||.|+|+||++++|.|+++|++|||+|+++++
T Consensus 558 pv~~v~v~l~dg~~h~vd--s~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~ 635 (693)
T 2xex_A 558 PLIDVKAKLYDGSYHDVD--SSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEP 635 (693)
T ss_dssp CBCSEEEEEEEEECCTTT--CCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred ceeeEEEEEEeccccCCC--CCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccc
Confidence 999999999999999753 244678899999999999999999999999999999999999999999999999999888
Q ss_pred cCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCc
Q psy15088 1182 VPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPL 1231 (1291)
Q Consensus 1182 ~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~ 1231 (1291)
.. +.++|+|++|++|+|||+++||+.|+|+|+|+|.|+||+++|++++
T Consensus 636 ~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 683 (693)
T 2xex_A 636 RG--NAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIA 683 (693)
T ss_dssp ET--TEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHH
T ss_pred cC--CeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHH
Confidence 65 4799999999999999999999999999999999999999997654
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=5.7e-95 Score=918.64 Aligned_cols=662 Identities=23% Similarity=0.334 Sum_probs=468.0
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
.++++|||+|+||+|||||||+++|+...+.+...+.++.+.+++|++..|++||+|+.+...++.| +++.++|+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-----~~~~i~li 82 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-----KDHRINII 82 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-----TTEEEEEE
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-----CCeEEEEE
Confidence 4578899999999999999999999988877655555667789999999999999999999999998 78999999
Q ss_pred eCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHH
Q psy15088 476 DTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLD 553 (1291)
Q Consensus 476 DTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~ 553 (1291)
|||||.++. ..+.+..+|++|+|+|+..+...|+.++|..+...++|.++ ++| | +|....+.+..+..+..
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~iv--viN----K-iD~~~~~~~~~~~~l~~ 155 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA--FAN----K-MDKTGADLWLVIRTMQE 155 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE--EEE----C-TTSTTCCHHHHHHHHHH
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEE--EEE----C-CCcccCCHHHHHHHHHH
Confidence 999997654 44455677999999999999999999999999888999876 777 6 56554433333344433
Q ss_pred HhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccC-----ceeecCCCCcc-
Q psy15088 554 QLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSN-----KFLIDGFPRNQ- 627 (1291)
Q Consensus 554 ~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~-----~~liDGfPr~~- 627 (1291)
.++.. . -..++|++.+..+ .+++|++.+..+.|. .+....+|...
T Consensus 156 ~l~~~---------~----------~~~~~Pi~~~~~~----------~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 206 (691)
T 1dar_A 156 RLGAR---------P----------VVMQLPIGREDTF----------SGIIDVLRMKAYTYGNDLGTDIREIPIPEEYL 206 (691)
T ss_dssp TTCCC---------E----------EECEEEESCGGGC----------CEEEETTTTEEEEECSTTSCCEEEECCCGGGH
T ss_pred HhCCC---------c----------cceeccccCCCcc----------cchhhhhcceeeEeccCCCceeEEecCCHHHH
Confidence 33221 0 0235787765544 467899887654332 12222334321
Q ss_pred CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhh
Q psy15088 628 NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRF 705 (1291)
Q Consensus 628 ~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~ 705 (1291)
..++.|+.++.+.+ .+ .++.+++++++.. +.+.+.+++.+ ....+.+.||+|+|+.++
T Consensus 207 ~~~~~~r~~l~e~~-------~e-~dd~l~e~~l~~~-------~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~----- 266 (691)
T 1dar_A 207 DQAREYHEKLVEVA-------AD-FDENIMLKYLEGE-------EPTEEELVAAIRKGTIDLKITPVFLGSALKN----- 266 (691)
T ss_dssp HHHHHHHHHHHHHH-------TT-TCHHHHHHHHHTC-------CCCHHHHHHHHHHHHHTTSCEEEEECBGGGT-----
T ss_pred HHHHHHHHHHHHHH-------hh-CCHHHHHHHHCCC-------CCCHHHHHHHHHHHHHhCcEeEEEEeecccC-----
Confidence 23445555554432 23 3456788888743 35667777665 345678999999999999
Q ss_pred chhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhh
Q psy15088 706 NAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMK 785 (1291)
Q Consensus 706 ~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1291)
.|++.|||+|++++|+|.++++++.. ++. .. ....
T Consensus 267 ~Gv~~LLd~i~~~lPsP~~~~~~~~~----~~~--------------------------------------~~---~~~~ 301 (691)
T 1dar_A 267 KGVQLLLDAVVDYLPSPLDIPPIKGT----TPE--------------------------------------GE---VVEI 301 (691)
T ss_dssp BSHHHHHHHHHHHSCCTTTSCCEEEE----CSS--------------------------------------SC---EEEE
T ss_pred cCHHHHHHHHHHhCCChhhccccccc----CCC--------------------------------------cc---cccc
Confidence 89999999999999999987654321 000 00 1245
Q ss_pred ccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeC
Q psy15088 786 ACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPA 865 (1291)
Q Consensus 786 ~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~a 865 (1291)
.||+++|++++|||++.+++.|+ ++|+|||||+|++||+|++.. ....++|++|+.++|++.+++++|+|
T Consensus 302 ~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV~sG~l~~g~~v~~~~---------~~~~~~v~~l~~~~g~~~~~v~~~~a 371 (691)
T 1dar_A 302 HPDPNGPLAALAFKIMADPYVGR-LTFIRVYSGTLTSGSYVYNTT---------KGRKERVARLLRMHANHREEVEELKA 371 (691)
T ss_dssp CCCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEEESSCEEEETT---------TTEEEECCEEEEECSSCEEEESEEET
T ss_pred ccCCCCCcEEEEEEEEEcCCCCc-EEEEEEeeeeEecCCEEEecC---------CCcEEEEceEEEEeCCCceEcceecC
Confidence 68899999999999999998765 899999999999999999764 34678999999999999999999999
Q ss_pred CCeEEEccCCCcccccceeeccccCCcc-ccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcC
Q psy15088 866 GNWVLIEGIDQPIVKTSTITDLITNEDM-YIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EES 943 (1291)
Q Consensus 866 GnIv~I~Gl~~~~~k~~Tl~~~~~~~~~-~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~et 943 (1291)
||||+|.|++++.+ ++||++.. .. .+|.++.++ +|+++++|+|++++|++||.+||++|+++||++++.. +||
T Consensus 372 GdI~~i~gl~~~~~-Gdtl~~~~---~~~~~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et 446 (691)
T 1dar_A 372 GDLGAVVGLKETIT-GDTLVGED---APRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPET 446 (691)
T ss_dssp TCEEEEECCSSCCT-TCEEEETT---CCCCBCC---------------------------------CCCCSCEEEC----
T ss_pred CCEEEEeCcccCcc-CCEEecCC---CcccccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCC
Confidence 99999999998754 78998753 33 578888886 7999999999999999999999999999999999997 899
Q ss_pred CcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceee--eecC--CcceEEEEEEeecCccccccc
Q psy15088 944 GEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF--AETP--NKRNKITMIAEPLEKGLAEDI 1019 (1291)
Q Consensus 944 Ge~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~--~~s~--nk~~~i~~~~ePl~~~~~~~~ 1019 (1291)
||++|+||||||||||++||+++| ++++++|+|+|+|||||++++..... .++. +++++++++++|++++.+..+
T Consensus 447 ~e~i~~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f 525 (691)
T 1dar_A 447 GQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525 (691)
T ss_dssp -CEEEEESCCC---------CCCE-EEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhh-CceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEE
Confidence 999999999999999999999999 79999999999999999987665332 2332 346899999999998754333
Q ss_pred ccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccC
Q psy15088 1020 ENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLC 1099 (1291)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~ 1099 (1291)
.+.+ +.+.+|+ +++++|.+||+||+++||||
T Consensus 526 ~~~~-----------------------------------------~g~~~p~--------~~~~~v~~g~~~a~~~G~l~ 556 (691)
T 1dar_A 526 VNAI-----------------------------------------VGGVIPK--------EYIPAVQKGIEEAMQSGPLI 556 (691)
T ss_dssp EECC-----------------------------------------CTTSSCT--------TTHHHHHHHHHHHTTSCTTT
T ss_pred eecc-----------------------------------------cCCcCcH--------HHHHHHHHHHHHHHhcCCcc
Confidence 2211 0122333 45678999999999999999
Q ss_pred CCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeec
Q psy15088 1100 EEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQD 1179 (1291)
Q Consensus 1100 ~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~ 1179 (1291)
|+||+||+|+|.|+.+|..+ .+.+++..|+++||++|+++|+|+||||||.|+|+||++++|.|+++|++|||+|+++
T Consensus 557 g~pv~~v~v~l~dg~~h~vd--s~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~ 634 (691)
T 1dar_A 557 GFPVVDIKVTLYDGSYHEVD--SSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGM 634 (691)
T ss_dssp SCCBCSEEEEEEEECCCTTT--BCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEE
T ss_pred CCceeeEEEEEEeeeccccC--cchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecc
Confidence 99999999999999999753 2345788999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCcC
Q psy15088 1180 APVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 1232 (1291)
Q Consensus 1180 ~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~~ 1232 (1291)
++.. +.++|+|++|++|+|||+++||+.|+|+|+|+|.|+||+++|+++++
T Consensus 635 ~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~ 685 (691)
T 1dar_A 635 EPRG--NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQE 685 (691)
T ss_dssp EEET--TEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHH
T ss_pred eecC--CeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHHH
Confidence 8865 47999999999999999999999999999999999999999977654
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2.2e-86 Score=837.66 Aligned_cols=636 Identities=19% Similarity=0.238 Sum_probs=511.0
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
++.+||+|+||.|||||||+++|++..+.+...+.+..+.+++|+.+.|++||+|+.+....+.| +++.+||+||
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-----~~~~~nliDT 81 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-----RGHRVFLLDA 81 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-----TTEEEEEEEC
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-----CCEEEEEEeC
Confidence 56789999999999999999999988776555555566788999999999999999999888888 7899999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHh
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|||..+. ....+..+|.+++|+|+..|++.|++++++.+...++|.++ ++| | +|.. ...+..+.++...+
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~il--v~N----K-iD~~-~~~~~~~~~l~~~l 153 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV--VVT----K-LDKG-GDYYALLEDLRSTL 153 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE--EEE----C-GGGC-CCHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEE--Eec----C-Cchh-hhHHHHHHHHHHHh
Confidence 9998754 44556678999999999999999999999999888999876 677 5 5655 43333344444433
Q ss_pred CCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccC--ceeecCCCCcc-Cccch
Q psy15088 556 GIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSN--KFLIDGFPRNQ-NNLDG 632 (1291)
Q Consensus 556 g~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~--~~liDGfPr~~-~qa~~ 632 (1291)
+ .. ...++|++.+..+ .+++|++.++.+.+. .|-....|... ..+..
T Consensus 154 ~-~~-------------------~~~~~Pi~~~~~~----------~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (665)
T 2dy1_A 154 G-PI-------------------LPIDLPLYEGGKW----------VGLIDVFHGKAYRYENGEEREAEVPPEERERVQR 203 (665)
T ss_dssp C-SE-------------------EECEEEEEETTEE----------EEEEETTTTEEEEEETTEEEEECCCGGGHHHHHH
T ss_pred C-Cc-------------------ceEEeeecCCCcc----------cchhhhhhhheeecCCCceeEecCCHHHHHHHHH
Confidence 2 10 1235677665444 356788777544221 11111222211 12233
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH--hhccccccceEEeecchhhhhhhchhHH
Q psy15088 633 WNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI--SVYNTETMPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 633 ~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl--~~~~~~~~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
++.++.+.+ .+ .++.+++++++.. +.+.+.++..+ ...++...|++++|+.++ .|++.
T Consensus 204 ~r~~l~e~~-------~~-~d~~l~e~~l~~~-------~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~-----~Gv~~ 263 (665)
T 2dy1_A 204 FRQEVLEAI-------VE-TDEGLLEKYLEGE-------EVTGEALEKAFHEAVRRGLLYPVALASGERE-----IGVLP 263 (665)
T ss_dssp HHHHHHHHH-------HT-TCHHHHHHHHHTC-------CCCHHHHHHHHHHHHHTTSCEEEEECBTTTT-----BSHHH
T ss_pred HHHHHHHHH-------Hh-CCHHHHHHHHCCC-------CCCHHHHHHHHHHHHHhCCeeEEEEeecccC-----cCHHH
Confidence 444444322 23 3456777888732 46677777765 345568899999999999 89999
Q ss_pred HHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCC
Q psy15088 711 LVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPE 790 (1291)
Q Consensus 711 LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 790 (1291)
|||++++++|+|.++. ++
T Consensus 264 Ll~~i~~~lp~p~~~~--------------------------------------------------------------~~ 281 (665)
T 2dy1_A 264 LLELILEALPSPTERF--------------------------------------------------------------GD 281 (665)
T ss_dssp HHHHHHHHSCCHHHHH--------------------------------------------------------------CS
T ss_pred HHHHHHHhCCCccccC--------------------------------------------------------------CC
Confidence 9999999999996420 23
Q ss_pred CCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEE
Q psy15088 791 GRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVL 870 (1291)
Q Consensus 791 ~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~ 870 (1291)
+|++++|||++.+++.|+ ++|+|||||+|++||+|++.+ ..++|++|+.++|++.+++++|.|||||+
T Consensus 282 ~p~~~~V~k~~~d~~~G~-~~~~rV~sG~l~~g~~v~~~~-----------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~ 349 (665)
T 2dy1_A 282 GPPLAKVFKVQVDPFMGQ-VAYLRLYRGRLKPGDSLQSEA-----------GQVRLPHLYVPMGKDLLEVEEAEAGFVLG 349 (665)
T ss_dssp CSCEEEEEEEEEETTTEE-EEEEEEEESEECTTEEEBCTT-----------SCEEESSEEEEETTEEEEESCEETTCEEE
T ss_pred CCeEEEEEEEEEcCCCCe-EEEEEEcccEEecCCEEEcCC-----------CeEEEeEEEEEeCCCeeECCEECCCCEEE
Confidence 589999999999988765 899999999999999998643 35789999999999999999999999999
Q ss_pred EccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-CcCCcEEEE
Q psy15088 871 IEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EESGEHVVL 949 (1291)
Q Consensus 871 I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~etGe~ii~ 949 (1291)
+.|+++.. +++||++... ....++.++.++ .|+++++|+|.+++|++||.+||++|+++||++++.. ++|||++|+
T Consensus 350 i~gl~~~~-~Gdtl~~~~~-~~~~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~ 426 (665)
T 2dy1_A 350 VPKAEGLH-RGMVLWQGEK-PESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLW 426 (665)
T ss_dssp ESSCTTCC-TTCEEESSSC-CCGGGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEE
T ss_pred EeCCccCc-cCCEEecCCC-ccccccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEE
Confidence 99999864 5789987531 111578888886 7999999999999999999999999999999999998 789999999
Q ss_pred ecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeeccccee--eeecCC--cceEEEEEEeecCcccccccccceec
Q psy15088 950 GTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC--FAETPN--KRNKITMIAEPLEKGLAEDIENQIVH 1025 (1291)
Q Consensus 950 g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~--~~~s~n--k~~~i~~~~ePl~~~~~~~~~~~~~~ 1025 (1291)
||||||||||++||+ +| ++++++++|+|+|||||++++.... ..++.. ++++++++++|++ +..+.+.+
T Consensus 427 g~Gelhlei~~~rl~-~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~---g~~f~~~~-- 499 (665)
T 2dy1_A 427 GHGELHLATAKERLQ-DY-GVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS---EYGFEWRI-- 499 (665)
T ss_dssp ESSHHHHHHHHHHHH-HT-TCCEEEECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS---SCEEEECC--
T ss_pred ecCHHHHHHHHHHHH-HC-CceEEEeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECC---CCEEeeec--
Confidence 999999999999999 99 8999999999999999998765432 233332 3478999999997 22222111
Q ss_pred cccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCcee
Q psy15088 1026 IAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRN 1105 (1291)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~g 1105 (1291)
+.+.+|+ ++.++|.+||+||+++|||||+||+|
T Consensus 500 ---------------------------------------~~g~~~~--------~~~~~v~~g~~~a~~~G~l~g~pv~~ 532 (665)
T 2dy1_A 500 ---------------------------------------TGGVIPS--------KYQEAIEEGIKEAAKKGVLAGFPVMG 532 (665)
T ss_dssp ---------------------------------------CTTSSCG--------GGHHHHHHHHHHHHTSCTTTSCCBCS
T ss_pred ---------------------------------------cCCcchH--------HHHHHHHHHHHHHHhcCCccCCceee
Confidence 1133443 33578999999999999999999999
Q ss_pred eEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCC
Q psy15088 1106 VKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185 (1291)
Q Consensus 1106 v~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt 1185 (1291)
|+|+|.|+.+|..+ ....++..|+++||++|+++|+|+||||||.|+|+||++++|.|+++|++|||+|+++++..
T Consensus 533 v~v~l~dg~~h~~d--s~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-- 608 (665)
T 2dy1_A 533 FKAIVYNGSYHEVD--SSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-- 608 (665)
T ss_dssp EEEEEEEEECCTTT--BCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--
T ss_pred EEEEEEeeeccCCC--CCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--
Confidence 99999999999643 23457889999999999999999999999999999999999999999999999999988754
Q ss_pred CcEEEEEecccccccCchHHHhhccccceEeeecccceeecCCCCc
Q psy15088 1186 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPL 1231 (1291)
Q Consensus 1186 ~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v~~dp~ 1231 (1291)
+.++|+|++|++|+|||+++||+.|+|+|+|+|.|+||+++|+++.
T Consensus 609 ~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 654 (665)
T 2dy1_A 609 ALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLA 654 (665)
T ss_dssp TEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHH
T ss_pred CeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHH
Confidence 5899999999999999999999999999999999999999997644
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.6e-67 Score=646.54 Aligned_cols=458 Identities=17% Similarity=0.176 Sum_probs=339.1
Q ss_pred cCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccc----cccccccccccccCceeeeccceecccccCCCC
Q psy15088 394 MDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKN----LRYTDTLFTEQERGVSIKASPVTLLLPDVKGKN 469 (1291)
Q Consensus 394 ~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~----~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~ 469 (1291)
....+++|||||+||+|||||||+++||+.+|.+...+.++++ +++||++++||+|||||+++.++|.| ++
T Consensus 25 ~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-----~~ 99 (548)
T 3vqt_A 25 EREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-----RD 99 (548)
T ss_dssp HHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-----TT
T ss_pred hhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-----CC
Confidence 3456789999999999999999999999999988776666443 58999999999999999999999999 89
Q ss_pred eEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCc
Q psy15088 470 YLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSS 547 (1291)
Q Consensus 470 ~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~ 547 (1291)
+.|||||||||.+|. ..+++..+|+||+||||.+|+++||+++|+++.+.++|+++ ||| | +|+..++++..
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~--fIN----K-~Dr~~ad~~~~ 172 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMT--FVN----K-MDREALHPLDV 172 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE--EEE----C-TTSCCCCHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEE--EEe----c-ccchhcchhHh
Confidence 999999999998775 33344445799999999999999999999999999999987 998 6 79888888888
Q ss_pred HHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCc----eeecCC
Q psy15088 548 LPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNK----FLIDGF 623 (1291)
Q Consensus 548 l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~----~liDGf 623 (1291)
+.++.++|+.... +-|+|++.+..| .+++|+++++.+.+.. ....+.
T Consensus 173 ~~~i~~~l~~~~~-------------------p~~~Pig~~~~f----------~g~vdl~~~~~~~~~~~~~~~~~~~~ 223 (548)
T 3vqt_A 173 MADIEQHLQIECA-------------------PMTWPIGMGSSF----------KGTYDLLHKQLHLFSATHGGRIQSGI 223 (548)
T ss_dssp HHHHHHHHTSEEE-------------------ESEEEESCGGGC----------CEEEETTTTEEEECC-------CCCE
T ss_pred hhhhhhhcCCceE-------------------eEEeeeecCCcc----------cceEeeeeeeeeecccccCCcccccc
Confidence 8888888765221 236898887766 4789999887654321 000000
Q ss_pred -CCcc--CccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchh
Q psy15088 624 -PRNQ--NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKN 700 (1291)
Q Consensus 624 -Pr~~--~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~ 700 (1291)
+... .+++.+.....+.......+ +...+. +...+ +...+.+.||+|+|+.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~------~~~~e------~~~~g~~~PV~~gSA~~~ 279 (548)
T 3vqt_A 224 VIHGADDPQLDEYLGDQAEQLRMDLAL------------LEEAGT------PFDEE------RYLKGELTPVFFGSAINN 279 (548)
T ss_dssp ECCSTTCTHHHHHHGGGHHHHHHHHHH------------HHHHCC------CCCHH------HHHTTSEEEEEECBGGGT
T ss_pred cccccchHHHHHHHHHHHHHhhhHHHH------------HhhccC------chhHH------HHHhCCcceeeecccccC
Confidence 0000 01111111111100000000 000000 01111 123468899999999999
Q ss_pred hhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchh
Q psy15088 701 LVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDV 780 (1291)
Q Consensus 701 ~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1291)
.|++.|||+|++++|+|.+.... .+
T Consensus 280 -----~Gv~~LLd~iv~~~PsP~~~~~~------~~-------------------------------------------- 304 (548)
T 3vqt_A 280 -----FGVREMLDMFVEFAPGPQPRPAA------TR-------------------------------------------- 304 (548)
T ss_dssp -----BSHHHHHHHHHHHSCCSCCEEBS------SS--------------------------------------------
T ss_pred -----cCHHHHHHHHHHhCCCCCCcccc------cc--------------------------------------------
Confidence 89999999999999999764210 00
Q ss_pred hhhhhccCCCCCeEEEEEeeccC---CCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCce
Q psy15088 781 ARDMKACNPEGRLMVHSSKMYPT---EECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYK 857 (1291)
Q Consensus 781 ~~~~~~~d~~~pl~~~V~K~~~~---~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~ 857 (1291)
...+.+.|+.++|||+..+ ++.|+ ++|+|||||+|++||+|++.+ .++.++|+++++++|+++
T Consensus 305 ----~~~~~~~p~~a~vfKi~~~~~~~~~Gr-la~~RV~sG~l~~g~~v~~~~---------~~~~~rv~~l~~~~g~~~ 370 (548)
T 3vqt_A 305 ----VVEPGEEAFTGVVFKIQANMDKAHRDR-MAFLRICSGTFTRGMRLKHHR---------TGKDVTVANATIFMAQDR 370 (548)
T ss_dssp ----EECTTCSSCEEEEEEEECC-------C-EEEEEEEESCEETTCEEEETT---------TTEEEECTTCEECCCSSC
T ss_pred ----ccCCCCcCceEEEEEEEccCCcCCCCe-EEEEEEecceecCCCEEEeec---------cccccccchhhhhccccc
Confidence 0012346899999999887 56554 999999999999999999876 346789999999999999
Q ss_pred eeeceeeCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCcee
Q psy15088 858 VEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLT 937 (1291)
Q Consensus 858 ~~v~~a~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~ 937 (1291)
+++++|.|||||+|.|++++.+ ++|+++.. ...++.++.+. +|+++++|+|+++.|.++|.+||++|+++||+..
T Consensus 371 ~~v~~a~AGdIvai~gl~~~~~-GDTl~~~~---~~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v 445 (548)
T 3vqt_A 371 TGVEEAFPGDIIGIPNHGTIKI-GDTFTESK---EVLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQL 445 (548)
T ss_dssp CSSCEECTTCEEEEECSSCCCT-TCEEESSS---SCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEE
T ss_pred cccCEEecCCEEEecCCccCcc-CCEecCCC---CccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeE
Confidence 9999999999999999998765 67998752 34567777774 8999999999999999999999999999999877
Q ss_pred EEECcCCcEEEEecchhHHHHHHHHHHhhhcceeEE-----EcCceEEEEEeeeecccc
Q psy15088 938 TKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIK-----VADPVVAFCETVVETSSL 991 (1291)
Q Consensus 938 v~~~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~-----vs~p~V~yrEti~~~~~~ 991 (1291)
++.++|||++|+|||||||||+++||+++| |+++. ++.|+|+|||||...++.
T Consensus 446 ~~~~et~e~il~g~GeLHLeI~~erL~~ey-~vev~~e~v~~~~P~V~YrEti~~~~~~ 503 (548)
T 3vqt_A 446 FRPLVNNDYILGAVGVLQFDVIVARLADEY-GVDAVYEGVSTHTARWVYCEDKKIFADF 503 (548)
T ss_dssp EEESSSCCCEEEESSTHHHHHHHHHHHHHH-CCCEEEEECSCCEEEEEECSCHHHHHHH
T ss_pred EEECCCCcEEEEEECHHHHHHHHHHHHHHh-CCCEEEeeccccCceEEecCCccchhhh
Confidence 777999999999999999999999999999 79865 688999999999876554
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=8.3e-62 Score=599.31 Aligned_cols=499 Identities=18% Similarity=0.242 Sum_probs=371.5
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
++++|||+|+||+|||||||+++|++.++.+.... .+.+++|++..|++||+|+++..+++.|....++++.++|+|
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 46789999999999999999999999887654332 357899999999999999999999998854455679999999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHH
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ 554 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~ 554 (1291)
||||.++. ..+.+..+|++|+|+|+..|++.||..+|..+...++|.++ ++| | +|....+ .......
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIv--viN----K-iDl~~a~----~~~v~~e 148 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIP--VIN----K-IDLPSAD----VDRVKKQ 148 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEE--EEE----C-TTSTTCC----HHHHHHH
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEE--EEe----c-cCccccC----HHHHHHH
Confidence 99998764 34455677999999999999999999999999889999765 777 5 4432111 1111110
Q ss_pred hCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHH
Q psy15088 555 LGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWN 634 (1291)
Q Consensus 555 lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~ 634 (1291)
+.+ .
T Consensus 149 --------------------l~~---------------------------------------~----------------- 152 (600)
T 2ywe_A 149 --------------------IEE---------------------------------------V----------------- 152 (600)
T ss_dssp --------------------HHH---------------------------------------T-----------------
T ss_pred --------------------HHH---------------------------------------h-----------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHH
Q psy15088 635 KEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714 (1291)
Q Consensus 635 ~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~ 714 (1291)
+.....++++.|+..+ .|+..|++.
T Consensus 153 --------------------------------------------------lg~~~~~vi~vSAktg-----~GI~~Lle~ 177 (600)
T 2ywe_A 153 --------------------------------------------------LGLDPEEAILASAKEG-----IGIEEILEA 177 (600)
T ss_dssp --------------------------------------------------SCCCGGGCEECBTTTT-----BSHHHHHHH
T ss_pred --------------------------------------------------hCCCcccEEEEEeecC-----CCchHHHHH
Confidence 0000124677888888 899999999
Q ss_pred HHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeE
Q psy15088 715 CVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLM 794 (1291)
Q Consensus 715 Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~ 794 (1291)
+++++|+|.. ++++|+.
T Consensus 178 I~~~lp~p~~---------------------------------------------------------------~~~~pl~ 194 (600)
T 2ywe_A 178 IVNRIPPPKG---------------------------------------------------------------DPQKPLK 194 (600)
T ss_dssp HHHHSCCCCC---------------------------------------------------------------CTTSCCE
T ss_pred HHHhcccccc---------------------------------------------------------------cccCCcc
Confidence 9999998852 1346889
Q ss_pred EEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc-c
Q psy15088 795 VHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE-G 873 (1291)
Q Consensus 795 ~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~-G 873 (1291)
++|+|.+.+++.|. ++++||++|++++||.|++.+. ....+|++++.+.+ ...+++++.||||+++. |
T Consensus 195 ~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~~---------~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~g 263 (600)
T 2ywe_A 195 ALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMST---------GKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAAS 263 (600)
T ss_dssp EEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETTT---------TEEEECCEEEEESS-SEEEESCEETTCEEEEESS
T ss_pred eeEEEEeecccceE-EEEEEEEeCEEecCCEEEeccc---------cceEeeecccccCC-CceECCEEecCceeeeecc
Confidence 99999999987654 9999999999999999998762 35788999998876 58899999999999884 6
Q ss_pred CC---CcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEe
Q psy15088 874 ID---QPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLG 950 (1291)
Q Consensus 874 l~---~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g 950 (1291)
+. +. ..++|+++... +...++.++++ ++|+++++|+|.+..|.++|.+||++|..+||++.+. .||+|.++.|
T Consensus 264 i~~~~~~-~~GDtl~~~~~-~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g 339 (600)
T 2ywe_A 264 IKDVRDI-RIGDTITHAKN-PTKEPVPGFQP-AKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMG 339 (600)
T ss_dssp CCCTTSS-CTTCEEEESSS-CCSSCCSCCCC-CCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEE
T ss_pred ccchhhc-cCCCEEEeCCC-ccccccCCCCC-CCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccc
Confidence 53 43 23678887532 11135667777 4899999999999999999999999999999999887 6788877777
Q ss_pred -----cchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceec
Q psy15088 951 -----TGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVH 1025 (1291)
Q Consensus 951 -----~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~ 1025 (1291)
|||||||++++||+++| |+++.+++|.|+||||+++.... +. +++
T Consensus 340 ~~~~~~G~lHlei~~erl~re~-~~~v~~~~P~V~yreti~~~g~~--------------~~-----------~~~---- 389 (600)
T 2ywe_A 340 FRVGFLGLLHMEIVQERLEREY-GVKIITTAPNVIYRVKKKFTDEV--------------IE-----------VRN---- 389 (600)
T ss_dssp EEEEESSHHHHHHHHHHHHHHS-CCCEEECCCEECEEEEETTCSSC--------------EE-----------ESS----
T ss_pred eEEEeccHHHHHHHHHHHHhhc-CceEEEEeeeEEEEEEecCCCcE--------------EE-----------EeC----
Confidence 99999999999999999 89999999999999998731000 00 000
Q ss_pred cccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCcee
Q psy15088 1026 IAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRN 1105 (1291)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~g 1105 (1291)
| .++|+.+
T Consensus 390 --------------------------------------------p----------------------------~~~p~~~ 397 (600)
T 2ywe_A 390 --------------------------------------------P----------------------------MDFPDNA 397 (600)
T ss_dssp --------------------------------------------G----------------------------GGSCSCG
T ss_pred --------------------------------------------h----------------------------hhCCCCC
Confidence 0 1123322
Q ss_pred eEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCC
Q psy15088 1106 VKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGS 1185 (1291)
Q Consensus 1106 v~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt 1185 (1291)
+ .-+.|+||||.++|.+|++++|.|+++|++|||++.++++..+
T Consensus 398 ----------~-------------------------~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~- 441 (600)
T 2ywe_A 398 ----------G-------------------------LIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP- 441 (600)
T ss_dssp ----------G-------------------------GEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-
T ss_pred ----------c-------------------------ccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-
Confidence 0 0037999999999999999999999999999999999887533
Q ss_pred CcEEEEEecccccc-cCchHHHhhccccceEeeecccceeec---------CCCCcCcccccCCCCCCCcccHHHHHHHH
Q psy15088 1186 PLYTIKAFIPAIDS-FGFETDLRTHTQGQAFCLSVFHHWQIV---------PGDPLDKSIVIRPLEPQPATHLAREFMIK 1255 (1291)
Q Consensus 1186 ~~~~I~a~lPv~es-fgf~~~LRs~T~G~a~~~~~f~~~~~v---------~~dp~~~~~~~~~~~~~~~~~~a~~~~~~ 1255 (1291)
+...|+|.+|++|+ |||.++|||.|+|+|+|.+.|+||+++ .++|.|.-+++-. ...+...+|+++.+
T Consensus 442 ~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~~~~~~~~--~~~~~~~~~~~~~~ 519 (600)
T 2ywe_A 442 NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKKPVDALSFIVH--ADRAQKFARRVAEK 519 (600)
T ss_dssp TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBCGGGCEEEE--GGGHHHHHHHHHHH
T ss_pred CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEccccccccccCCCEeccchhhhh--hHHHHHHHHHHHHH
Confidence 58999999999999 899999999999999999999999999 4555444332211 13456788999888
Q ss_pred Hhh
Q psy15088 1256 TRR 1258 (1291)
Q Consensus 1256 iR~ 1258 (1291)
+++
T Consensus 520 ~~~ 522 (600)
T 2ywe_A 520 LRE 522 (600)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.5e-60 Score=586.45 Aligned_cols=495 Identities=21% Similarity=0.282 Sum_probs=363.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+++|||+|+||+|||||||+++|++.++.+... ..+.+++|+++.|++||+|+++..+++.|....++++.++|+||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~---~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR---EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc---cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 468999999999999999999999988766433 23578999999999999999999999988544556799999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHh
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|||.++. ..+.+..+|++|+|+|+..|++.||..+|..+...++|.++ ++| | +|....+ ..+....+
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIv--ViN----K-iDl~~a~----~~~v~~ei 147 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVP--VLN----K-IDLPAAD----PERVAEEI 147 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEE--EEE----C-TTSTTCC----HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE--eee----c-cCccccc----HHHHHHHH
Confidence 9998764 34455677999999999999999999999999888998765 777 5 4432111 11111100
Q ss_pred CCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHH
Q psy15088 556 GIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNK 635 (1291)
Q Consensus 556 g~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~ 635 (1291)
.+
T Consensus 148 --------------------~~---------------------------------------------------------- 149 (599)
T 3cb4_D 148 --------------------ED---------------------------------------------------------- 149 (599)
T ss_dssp --------------------HH----------------------------------------------------------
T ss_pred --------------------HH----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHH
Q psy15088 636 EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMC 715 (1291)
Q Consensus 636 ~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~I 715 (1291)
. +.....++++.|+..+ .|++.|++.+
T Consensus 150 ---------------------------------------------~---lg~~~~~vi~vSAktg-----~GI~~Ll~~I 176 (599)
T 3cb4_D 150 ---------------------------------------------I---VGIDATDAVRCSAKTG-----VGVQDVLERL 176 (599)
T ss_dssp ---------------------------------------------H---TCCCCTTCEEECTTTC-----TTHHHHHHHH
T ss_pred ---------------------------------------------H---hCCCcceEEEeecccC-----CCchhHHHHH
Confidence 0 0000124677888888 8999999999
Q ss_pred HhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEE
Q psy15088 716 VKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMV 795 (1291)
Q Consensus 716 v~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~ 795 (1291)
++++|+|.. ++++|+.+
T Consensus 177 ~~~lp~p~~---------------------------------------------------------------~~~~p~~a 193 (599)
T 3cb4_D 177 VRDIPPPEG---------------------------------------------------------------DPEGPLQA 193 (599)
T ss_dssp HHHSCCCCC---------------------------------------------------------------CTTSCCEE
T ss_pred hhcCCCccc---------------------------------------------------------------cccCCcee
Confidence 999998852 13468999
Q ss_pred EEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc-cC
Q psy15088 796 HSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE-GI 874 (1291)
Q Consensus 796 ~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~-Gl 874 (1291)
+|++.+.+++.|. ++++||++|+|++||+|++.+. ....+|.+++.+.+. ..+++++.||||+++. |+
T Consensus 194 lI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~~---------~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi 262 (599)
T 3cb4_D 194 LIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMST---------GQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAI 262 (599)
T ss_dssp EEEEEEEETTTEE-EEEEEEEESCEESSCEEEETTT---------CCEEECCEEEEESSS-EEECSEECTTCEEEEECCC
T ss_pred eeeeccccccccE-EEEEEEEeCEEecCCEEEeccc---------cceeEEeeeeeccCC-ceECCEEcCCCeeEeeccc
Confidence 9999999888765 9999999999999999998763 356789999988865 8899999999999884 65
Q ss_pred C---CcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcCCcEEEEe-
Q psy15088 875 D---QPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLG- 950 (1291)
Q Consensus 875 ~---~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~etGe~ii~g- 950 (1291)
+ +.. .++|+++... +...++.++++ ++|+++++++|.+..|.++|.++|++|.++||++.+. ++|+|.++.|
T Consensus 263 ~~~~~~~-~GDtl~~~~~-~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gf 338 (599)
T 3cb4_D 263 KDIHGAP-VGDTLTLARN-PAEKALPGFKK-VKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGF 338 (599)
T ss_dssp SSGGGSC-TTCEEEESSS-CCSSCCTTCCC-CCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEE
T ss_pred cccccCc-cCCEeeecCC-ccccccccccC-CCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccce
Confidence 4 332 3678887532 22245666776 4899999999999999999999999999999999887 7788888777
Q ss_pred ----cchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCcccccccccceecc
Q psy15088 951 ----TGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHI 1026 (1291)
Q Consensus 951 ----~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~~~~~~~~ 1026 (1291)
|||||||++++||+++| |+++.+++|.|+||||++..+.. .+.+
T Consensus 339 r~g~lG~lhlei~~erl~~e~-~~~~~~~~P~V~yreti~~g~~~--------------------------~~~~----- 386 (599)
T 3cb4_D 339 RCGFLGLLHMEIIQERLEREY-DLDLITTAPTVVYEVETTSREVI--------------------------YVDS----- 386 (599)
T ss_dssp EEEESSHHHHHHHHHHHHHTS-CCCEEECCCEECEEEEESSSCEE--------------------------EESS-----
T ss_pred EEEeccHHHHHHHHHHHHHHc-CceEEEEeeeEEEEEEecCCceE--------------------------EecC-----
Confidence 99999999999999999 89999999999999998742110 0000
Q ss_pred ccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccCCCCceee
Q psy15088 1027 AWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNV 1106 (1291)
Q Consensus 1027 ~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~~epv~gv 1106 (1291)
|.. ++.+ |+
T Consensus 387 -------------------------------------------p~~-----~p~~--------------~~--------- 395 (599)
T 3cb4_D 387 -------------------------------------------PSK-----LPAV--------------NN--------- 395 (599)
T ss_dssp -------------------------------------------GGG-----SCCG--------------GG---------
T ss_pred -------------------------------------------hhh-----CCCc--------------cc---------
Confidence 110 0000 00
Q ss_pred EEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeeccccCCCC
Q psy15088 1107 KFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSP 1186 (1291)
Q Consensus 1107 ~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~ 1186 (1291)
-+.|+||||.++|.+|++++|.|+++|++|||+++++++. + +
T Consensus 396 ------------------------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~-~-~ 437 (599)
T 3cb4_D 396 ------------------------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYH-G-N 437 (599)
T ss_dssp ------------------------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECC-T-T
T ss_pred ------------------------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEec-C-C
Confidence 0279999999999999999999999999999999998875 3 4
Q ss_pred cEEEEEecccccc-cCchHHHhhccccceEeeecccceeec---------CCCCcCcccccCCCCCCCcccHHHHHHHHH
Q psy15088 1187 LYTIKAFIPAIDS-FGFETDLRTHTQGQAFCLSVFHHWQIV---------PGDPLDKSIVIRPLEPQPATHLAREFMIKT 1256 (1291)
Q Consensus 1187 ~~~I~a~lPv~es-fgf~~~LRs~T~G~a~~~~~f~~~~~v---------~~dp~~~~~~~~~~~~~~~~~~a~~~~~~i 1256 (1291)
...|+|.+|++|+ |||.++|||.|+|+|+|.+.|+||+++ .++|.|..+.+-- ...+...+|+++.++
T Consensus 438 ~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~ 515 (599)
T 3cb4_D 438 QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITH--RDNSQNRGRELVEKM 515 (599)
T ss_dssp EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEEEEEEEE--GGGHHHHHHHHHHHH
T ss_pred eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEecccceecc--HHHHHHHHHHHHHHH
Confidence 8999999999999 899999999999999999999999998 4444443322111 134567888898887
Q ss_pred hh
Q psy15088 1257 RR 1258 (1291)
Q Consensus 1257 R~ 1258 (1291)
++
T Consensus 516 ~~ 517 (599)
T 3cb4_D 516 KD 517 (599)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.4e-52 Score=510.24 Aligned_cols=452 Identities=16% Similarity=0.175 Sum_probs=304.6
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCcccc----ccccccccccccccCceeeeccceecccccCCCCeEEE
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEK----NLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMN 473 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~----~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~ 473 (1291)
+++|||+|+||+|||||||+++|++..+.+...+.... ..+++|+++.|++||+|+++..+.+.| +++.++
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~ 85 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-----HDCLVN 85 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-----TTEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-----CCeEEE
Confidence 56899999999999999999999988776544333322 267899999999999999999999998 789999
Q ss_pred EEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHH
Q psy15088 474 IFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAV 551 (1291)
Q Consensus 474 liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i 551 (1291)
|+|||||.++. +.+.+..+|++|+|+|+..++..|+++++..+...++|.++ |+| | +|....+..+.+.++
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiiv--viN----K-~Dl~~~~~~~~~~~i 158 (529)
T 2h5e_A 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILT--FMN----K-LDRDIRDPMELLDEV 158 (529)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEE--EEE----C-TTSCCSCHHHHHHHH
T ss_pred EEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEE--EEc----C-cCCccccHHHHHHHH
Confidence 99999998665 45566788999999999999999999999999888999765 777 5 565444333334555
Q ss_pred HHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCcc-Ccc
Q psy15088 552 LDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQ-NNL 630 (1291)
Q Consensus 552 ~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~-~qa 630 (1291)
...++... . ..++|++.... +.|+.|++.+....+.. .+|..... ...
T Consensus 159 ~~~l~~~~---------~----------~~~~pi~sa~~----------~~Gv~dl~~~~~~~~~~--~~g~~~~~~~~i 207 (529)
T 2h5e_A 159 ENELKIGC---------A----------PITWPIGCGKL----------FKGVYHLYKDETYLYQS--GKGHTIQEVRIV 207 (529)
T ss_dssp HHHHCCEE---------E----------ESEEEESCGGG----------CCEEEETTTTEEEECCT--TCCSSCCCCCEE
T ss_pred HHHhCCCc---------c----------ceecceecccC----------cceeeehhhhhHhhhcc--cCCCcccccccC
Confidence 55544311 0 12456544333 35778887765432210 00110000 000
Q ss_pred chHH-HHHHHHHHHHHhhhcCCCchHHHHHHhhcccC--CCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhch
Q psy15088 631 DGWN-KEMADKVELLYVLFFDCPEDVCVRRCLKRGAE--GSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNA 707 (1291)
Q Consensus 631 ~~~~-~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~--~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g 707 (1291)
..+. ..+.+.. ++.+.+++++.... .... +.. +-...++...||+++|+.+| .|
T Consensus 208 ~~~~~~~l~e~~-----------~~~~~~~~~e~~~l~~~~~~-~~~------~~~~~~~~~~Pv~~gSA~~~-----~G 264 (529)
T 2h5e_A 208 KGLNNPDLDAAV-----------GEDLAQQLRDELELVKGASN-EFD------KELFLAGEITPVFFGTALGN-----FG 264 (529)
T ss_dssp CCSSCHHHHHHH-----------CHHHHHHHHHHHHHHHHHSC-CCC------HHHHHTTSEEEEEECBTTTT-----BS
T ss_pred CCCCHHHHHHhh-----------CHHHHHHhhcccchhhhhhh-hhh------HHHHHhCceeEEEeeecccC-----CC
Confidence 0000 0111100 01111111111000 0000 000 01234568899999999999 89
Q ss_pred hHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhcc
Q psy15088 708 EKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKAC 787 (1291)
Q Consensus 708 ~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1291)
++.|||++++++|+|..++.. + ..+
T Consensus 265 v~~LLd~i~~~~P~P~~~~~~-------~------------------------------------------------~~~ 289 (529)
T 2h5e_A 265 VDHMLDGLVEWAPAPMPRQTD-------T------------------------------------------------RTV 289 (529)
T ss_dssp HHHHHHHHHHHSCSSCCEEBS-------S------------------------------------------------CEE
T ss_pred HHHHHHHHHHhCCCCCccccc-------c------------------------------------------------ccc
Confidence 999999999999999764310 0 011
Q ss_pred CC-CCCeEEEEEeecc--C-CCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeecee
Q psy15088 788 NP-EGRLMVHSSKMYP--T-EECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRV 863 (1291)
Q Consensus 788 d~-~~pl~~~V~K~~~--~-~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a 863 (1291)
++ ++|+.++|||+.. + ++.|+ ++|+|||||+|++||+|++.+. ++.++|++++.++|.+.+++++|
T Consensus 290 ~~~~~~~~~~vfKi~~~~d~~~~G~-i~~~RV~sG~l~~g~~v~~~~~---------~~~~~v~~i~~~~g~~~~~v~~a 359 (529)
T 2h5e_A 290 EASEDKFTGFVFKIQANMDPKHRDR-VAFMRVVSGKYEKGMKLRQVRT---------AKDVVISDALTFMAGDRSHVEEA 359 (529)
T ss_dssp CTTCCSCEEEEEEECSSCCSSSSCC-CEEEEEEESCEETTCEEEETTT---------TEEEECSCEECCCC-----CCEE
T ss_pred CCCCCCeEEEEEEEeeccCcCCCce-EEEEEEecCeEcCCCEEEEeeC---------CCEEEeceeeEEeCCCceEcceE
Confidence 22 5799999999976 2 44455 9999999999999999998763 45789999999999999999999
Q ss_pred eCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEE-Cc
Q psy15088 864 PAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKV-EE 942 (1291)
Q Consensus 864 ~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~-~e 942 (1291)
.|||||++.|++++.+ ++||++.. ...+.++.+. +|+++++|+|+++.|.+||.+||++|+++|| +++.. ++
T Consensus 360 ~aGdiv~i~~l~~~~~-Gdtl~~~~----~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~ 432 (529)
T 2h5e_A 360 YPGDILGLHNHGTIQI-GDTFTQGE----MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPIS 432 (529)
T ss_dssp CTTCEEEECCSSCCCT-TCEEESSC----CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETT
T ss_pred CCCCEEEEeccCCCcc-CCEeecCC----ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCC
Confidence 9999999999988765 78998742 2456777764 7999999999999999999999999999998 66665 89
Q ss_pred CCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeec
Q psy15088 943 SGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVET 988 (1291)
Q Consensus 943 tGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~ 988 (1291)
|||++|+|||||||||+++||+++| |+++.+++|.|+|||||...
T Consensus 433 t~~~il~~~Gelhlev~~~rl~~ey-~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 433 NNDLIVGAVGVLQFDVVVARLKSEY-NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp SCCEEEEESSTHHHHHHHHHHHHHS-SCCEEEECCCCSEEEEEECS
T ss_pred CCcEEEEEECHHHHHHHHHHHHHHh-CcEEEEecCceeEEEEEcCC
Confidence 9999999999999999999999999 89999999999999999643
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4.4e-51 Score=500.70 Aligned_cols=451 Identities=17% Similarity=0.144 Sum_probs=337.9
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccc----cccccccccccccccCceeeeccceecccccCCCCeEEE
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE----KNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMN 473 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~----~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~ 473 (1291)
+++|||+|+||+|+|||||+++|++..+.+...+.+. .+.+++|+.+.|++||+|+++....+.| +++.++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~i~ 85 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-----KDYLIN 85 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-----TTEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-----CCEEEE
Confidence 5689999999999999999999999888775444332 2466899999999999999999999999 799999
Q ss_pred EEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHH
Q psy15088 474 IFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAV 551 (1291)
Q Consensus 474 liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i 551 (1291)
|+|||||.++. ....+..+|++|+|+|+..+++.|+.++|..+...++|.++ |+| | +|....+....+.++
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiiv--viN----K-~Dl~~~~~~~~l~ei 158 (528)
T 3tr5_A 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMT--FIN----K-MDRDTRPSIELLDEI 158 (528)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEE--EEE----C-TTSCCSCHHHHHHHH
T ss_pred EEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEe----C-CCCccccHHHHHHHH
Confidence 99999998765 44556678999999999999999999999999999999876 777 6 566444444445555
Q ss_pred HHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCcee-----ecCCCCc
Q psy15088 552 LDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFL-----IDGFPRN 626 (1291)
Q Consensus 552 ~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~l-----iDGfPr~ 626 (1291)
.+.++... ...++|++.+..| .+++|+++++.+.+..-- ....|..
T Consensus 159 ~~~l~~~~-------------------~~~~~pig~~~~f----------~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~ 209 (528)
T 3tr5_A 159 ESILRIHC-------------------APVTWPIGMGKYF----------KGIYHLIEDAIYLYQPGKHERVGESERIEG 209 (528)
T ss_dssp HHHHCCEE-------------------EESEEEESCGGGC----------CEEEETTTTEEEECCTTSSSSTTCSCEEEC
T ss_pred HHhhCCCc-------------------eeeecccccCCce----------eEEEEeecCEEEEecCCCCCcccccccccc
Confidence 55554311 1235788777665 478999988765432100 0000111
Q ss_pred cCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhc
Q psy15088 627 QNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFN 706 (1291)
Q Consensus 627 ~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~ 706 (1291)
.+. ..+++.+.+.. ..+++ +.++.+.. +. +.. +-...++...||+++|+.+| .
T Consensus 210 ~~~-~~~~~~l~~~~----~~~~e--~~~l~~~~---~~------~~~------~~~~~~~~~~PV~~gSA~~~-----~ 262 (528)
T 3tr5_A 210 INN-PELDKKLGDLA----SELRN--EIELVKGA---SH------PFE------REGYLKGELTPIFFGSAINN-----F 262 (528)
T ss_dssp TTC-HHHHHHHTHHH----HHHHH--HHHHHHHH---SC------CCC------HHHHHTTSEEEEEECBGGGT-----B
T ss_pred cch-HHHHHHHHHHH----HHHhh--hcchhhhh---hh------HHH------HHHHhcCceeEEEeccccCC-----c
Confidence 110 11222222111 11100 00000000 00 000 12334578899999999999 9
Q ss_pred hhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhc
Q psy15088 707 AEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKA 786 (1291)
Q Consensus 707 g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1291)
|++.|||++++++|+|....... +. ..
T Consensus 263 GV~~Lld~i~~~~p~p~~~~~~~------~~-----------------------------------------------~~ 289 (528)
T 3tr5_A 263 GVGELLDAFVKEAPPPQGRETNS------RL-----------------------------------------------VK 289 (528)
T ss_dssp SHHHHHHHHHHHSCCCCCBCBSS------SC-----------------------------------------------BC
T ss_pred cHHHHHHHHHHhCCCCCcccccc------ee-----------------------------------------------eC
Confidence 99999999999999997643110 00 00
Q ss_pred cCCCCCeEEEEEeecc--CC-CCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeecee
Q psy15088 787 CNPEGRLMVHSSKMYP--TE-ECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRV 863 (1291)
Q Consensus 787 ~d~~~pl~~~V~K~~~--~~-~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a 863 (1291)
+ .++|+.++|||+.. ++ +.|+ ++|+|||||+|++||.|++.+ .++.++|++++.++|.+++++++|
T Consensus 290 ~-~~~~~~~~VFKi~~~~dp~~~g~-l~~~RV~sG~l~~g~~v~~~~---------~~~~~rv~~~~~~~~~~~~~v~~a 358 (528)
T 3tr5_A 290 P-EEEKFSGFVFKIQANMDPGHRDR-IAFLRIASGQYQKGMKAYHVR---------LKKEIQINNALTFMAGKRENAEEA 358 (528)
T ss_dssp T-TSSSCEEEEEEEEECCC-CCCCE-EEEEEEEESCEETTEEEEETT---------TTEEEEESSCBCCBTTCSSCCSEE
T ss_pred C-CcccceeEEEEEecccCccCCce-EEEEEEecCeEcCCCEEEecC---------CCceEEEeeeEEEeCCCeeECCEE
Confidence 1 25799999999985 66 5554 999999999999999999876 346789999999999999999999
Q ss_pred eCCCeEEEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCCCChhHHHHHHHHHHHhCCceeEEECcC
Q psy15088 864 PAGNWVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEES 943 (1291)
Q Consensus 864 ~aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~et 943 (1291)
.||||+++.|++++.+ ++|+++. ....+.++.+. .|+++++|+|+++.|.+||.+||++|++|||+..++.++|
T Consensus 359 ~aGdI~~~~~l~~~~~-GDtl~~~----~~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~~~~~~~~~ 432 (528)
T 3tr5_A 359 WPGDIIGLHNHGTIQI-GDTFTQG----ERFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDS 432 (528)
T ss_dssp CTTCEEEEEESSSCCT-TCEEESS----CCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSCEEEEETTC
T ss_pred CCCCEEEEcCCCCCcc-CCEEcCC----CCcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 9999999999988654 6899873 23456666664 7999999999999999999999999999999743445899
Q ss_pred CcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeee
Q psy15088 944 GEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVE 987 (1291)
Q Consensus 944 Ge~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~ 987 (1291)
||++|+|||||||||+++||+++| |+++.+++|.|+|+++|..
T Consensus 433 ~~~il~~~G~lhlev~~~rL~~ey-~v~v~~~~~~v~~~~~i~~ 475 (528)
T 3tr5_A 433 NELILGAVGLLQFDVVAYRLENEY-NVKCVYESVNVVTARWVIC 475 (528)
T ss_dssp CCEEEEESSTHHHHHHHHHHHHHH-CCCEEEECCSCCEEEEEEC
T ss_pred CCEEEEEEcHHHHHHHHHHHHHHh-CcEEEEecCceEEEEEecC
Confidence 999999999999999999999999 8999999999999999975
No 13
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=6.7e-36 Score=385.75 Aligned_cols=193 Identities=39% Similarity=0.704 Sum_probs=185.4
Q ss_pred ChHHHhHHhhhCCceEEEEcccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeeeCCCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKR 80 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s~n~~ 80 (1291)
|.+||++|+++||++++..+|||||+|+|+||||||+|++||+++||++++++|+|.|+|||||+..+...|+.+++|+|
T Consensus 504 l~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~~~~~~~~~~~~~~~~ 583 (842)
T 1n0u_A 504 LVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKH 583 (842)
T ss_dssp HHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEESSCCSSCEEEECTTSS
T ss_pred HHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeeccccccceeeccCCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccchhhH
Q psy15088 81 NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSV 160 (1291)
Q Consensus 81 ~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~~~~ 160 (1291)
++++++++|||+++.+.++.|.+...++.+.+++.|.++++||...+++||||||+..|+|+|+|.+.+ +.++++|
T Consensus 584 ~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~~~~g----~~~~~~~ 659 (842)
T 1n0u_A 584 NRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKA----VQYLHEI 659 (842)
T ss_dssp CEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEECCCC----CTTHHHH
T ss_pred eEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEecCCC----ccccHHH
Confidence 999999999999999999999988888889999999999999999999999999999999999999865 6789999
Q ss_pred HHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 161 KDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 161 ~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
++||.+|||||+.+||||+||++||+|.|.|+.+|.+
T Consensus 660 ~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d 696 (842)
T 1n0u_A 660 KDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHAD 696 (842)
T ss_dssp HHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCC
Confidence 9999999999999999999999999999999999965
No 14
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2e-32 Score=308.65 Aligned_cols=198 Identities=21% Similarity=0.352 Sum_probs=158.1
Q ss_pred EEccCCCcccccceeeccccCCccccccCCCCCCCceEEEEEEeCCC----CC-----hhHHHHHHHHHHHhCCceeEEE
Q psy15088 870 LIEGIDQPIVKTSTITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNP----SE-----LPKMLDGLRKVNKSYPLLTTKV 940 (1291)
Q Consensus 870 ~I~Gl~~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~----~d-----~~kL~~~L~~L~~~DPsl~v~~ 940 (1291)
++.||++..+ ++||++.. ...++.+++++ +|+++++|+|.+. +| ..+|.++|.+|..+||+|++..
T Consensus 2 av~Gl~~~~i-GDTl~~~~---~p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGELKI-SDTICAQN---AVEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCCcc-CCEEcCCC---CcccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 4677877544 67888752 33567777874 9999999999987 66 6799999999999999999987
Q ss_pred -CcCCcEEEEecchhHHHHHHHHHHhhhcceeEEEcCceEEEEEeeeecccceeeeecCCcceEEEEEEeecCccccccc
Q psy15088 941 -EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDI 1019 (1291)
Q Consensus 941 -~etGe~ii~g~GELHLEi~l~~L~~~f~~i~i~vs~p~V~yrEti~~~~~~~~~~~s~nk~~~i~~~~ePl~~~~~~~~ 1019 (1291)
+++++++|+|||||||||++++|+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE--g~ev~v~~P~V~YrEt--~-------------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE--GFELAVSRPEVIIXEE--D-------------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH--TBCEEECCCEECCEEE--T--------------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc--CceEEEeCCEEEEEEE--C--------------------------------
Confidence 68999999999999999999999999 6999999999999996 0
Q ss_pred ccceeccccchhHHHHHHhhhccccHhhhcceeeeCCCCCCCceeccCCCCchhhhhhhhhHHHHHHHHHHHhhhcCccC
Q psy15088 1020 ENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLC 1099 (1291)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~iw~~gp~~~g~nilvd~~~~~~~~~~~~~~i~~si~~Gf~~a~~~GPL~ 1099 (1291)
|
T Consensus 121 ----------------------------------------------------------------------------G--- 121 (332)
T 3e3x_A 121 ----------------------------------------------------------------------------G--- 121 (332)
T ss_dssp ----------------------------------------------------------------------------T---
T ss_pred ----------------------------------------------------------------------------C---
Confidence 0
Q ss_pred CCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeec
Q psy15088 1100 EEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQD 1179 (1291)
Q Consensus 1100 ~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~ 1179 (1291)
.||||||.++|.||++++|.|+++|++|||.+.++
T Consensus 122 ---------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m 156 (332)
T 3e3x_A 122 ---------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDM 156 (332)
T ss_dssp ---------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred ---------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCc
Confidence 57899999999999999999999999999999988
Q ss_pred cccCCCCcEEEEEecccccccCchHHHhhccccceEeeecccceeec-CCCCcCc
Q psy15088 1180 APVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIV-PGDPLDK 1233 (1291)
Q Consensus 1180 ~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~~~~f~~~~~v-~~dp~~~ 1233 (1291)
++. +++.+.|+|++|++++|||.++||+.|+|+|+|++.|+||+++ |++...+
T Consensus 157 ~~~-~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r 210 (332)
T 3e3x_A 157 APD-GKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQR 210 (332)
T ss_dssp EEC-SSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCC
T ss_pred eEC-CCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccccc
Confidence 775 3468899999999999999999999999999999999999999 7886644
No 15
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.91 E-value=3.6e-24 Score=271.57 Aligned_cols=150 Identities=22% Similarity=0.379 Sum_probs=129.1
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccC-Ccceeee-eC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETS-SLKCFAE-TP 77 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~-~~~~~~~-s~ 77 (1291)
|.+||++|+++||++++.. +|||||+|+|+||||||+|++|||++| ++++++|+|.|+|||||++.+ ......+ ..
T Consensus 431 l~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f-~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~ 509 (704)
T 2rdo_7 431 MGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRETIRQKVTDVEGKHAKQS 509 (704)
T ss_pred HHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCEEEEEEeeccccccceeeecccc
Confidence 5789999999999999999 899999999999999999999999999 999999999999999999876 5433332 22
Q ss_pred CCC---eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccc
Q psy15088 78 NKR---NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDK 154 (1291)
Q Consensus 78 n~~---~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~ 154 (1291)
++| ++++++++|||+ ||++. .|.|+|.+.+ .
T Consensus 510 gg~~q~~~v~~~~ePl~~-----------------------------------------~~~g~-g~~f~~~~~g----~ 543 (704)
T 2rdo_7 510 GGRGQYGHVVIDMYPLEP-----------------------------------------GSNPK-GYEFINDIKG----G 543 (704)
T ss_pred CCCCeeEEEEEEEEECCC-----------------------------------------CCCCC-CcEEEEeccC----C
Confidence 233 689999999964 22221 3889998865 3
Q ss_pred cchhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 155 GLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 155 ~~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
.++++|+++|.+||+||+.+||||+||++|++|.|.|+.+|..
T Consensus 544 ~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ 586 (704)
T 2rdo_7 544 VIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDV 586 (704)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCC
Confidence 4678999999999999999999999999999999999999976
No 16
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.90 E-value=2.6e-24 Score=274.02 Aligned_cols=157 Identities=20% Similarity=0.328 Sum_probs=129.4
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcce--eeeeC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKC--FAETP 77 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~--~~~s~ 77 (1291)
|.+||++|+++||+++++. +|||||+|+|+||||||+|++|||++| ++++++|+|.|+|||||++.+.... ..+..
T Consensus 434 L~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~-gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~ 512 (709)
T 4fn5_A 434 MGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF-GVEANIGKPQVAYRETITKDNVEIEGKFVRQS 512 (709)
T ss_dssp HHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT-CCCBCCBCCCCCCEEECCCCSEEEEEEEEEEE
T ss_pred hHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh-CceEEEeeceEEEEEEEecCCceecceeeecc
Confidence 5789999999999999997 899999999999999999999999999 8999999999999999987553111 11122
Q ss_pred CCCeEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccch
Q psy15088 78 NKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLL 157 (1291)
Q Consensus 78 n~~~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~ 157 (1291)
.++... .+.|....+..+|++||... .+.|.|.+.+ ..++
T Consensus 513 ~~~~~~-----------------------------------~~~~~~~~~~~~~e~g~~~~-~~~f~~~~~~----~~~p 552 (709)
T 4fn5_A 513 GGRGQF-----------------------------------GHCWIRFSAADVDEKGNITE-GLVFENEVVG----GVVP 552 (709)
T ss_dssp TTEEEE-----------------------------------EEEEEEEECCCBC-CCCBCC-EEEEEECC-C----CSSC
T ss_pred CCcCcc-----------------------------------eeEEEEEeeccccccCCCcC-ceEEeccccc----ccCC
Confidence 222110 12477777788899998754 4899999865 4467
Q ss_pred hhHHHHHHhhhccccccCCCCCcccccceeEEecccccCCC
Q psy15088 158 GSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSP 198 (1291)
Q Consensus 158 ~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~a 198 (1291)
+++.++|.+||+||+.+||||+||++|++|.|.|+.+|..+
T Consensus 553 ~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~ 593 (709)
T 4fn5_A 553 KEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVD 593 (709)
T ss_dssp GGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTT
T ss_pred HHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCC
Confidence 88999999999999999999999999999999999999874
No 17
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=1.1e-23 Score=266.99 Aligned_cols=147 Identities=22% Similarity=0.367 Sum_probs=127.5
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCccee-eeeCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF-AETPN 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~-~~s~n 78 (1291)
|.+||++|+++||++++.. +|||||+|+|+||||||+|+++||++| ++++++|+|.|+|||||++.+..... .+..+
T Consensus 423 l~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~g 501 (693)
T 2xex_A 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFKSSAQVQGKFSRQSG 501 (693)
T ss_dssp HHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS-CCCEEECCCEECCEEEESSCEEEEEEEEECTT
T ss_pred HHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCeEEEEEEeccccceeEeeccccC
Confidence 5789999999999999999 899999999999999999999999999 89999999999999999987654332 33344
Q ss_pred CC---eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 79 KR---NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 79 ~~---~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
+| ++++++++|||++ ..|.|+|.+.+ ..
T Consensus 502 g~~~~~~v~~~~ePl~~g---------------------------------------------~g~~f~~~~~g----~~ 532 (693)
T 2xex_A 502 GRGQYGDVHIEFTPNETG---------------------------------------------AGFEFENAIVG----GV 532 (693)
T ss_dssp SSCEEEEEEEEEEECCTT---------------------------------------------CCCEEEECCCT----TS
T ss_pred CCCceEEEEEEEEECCCC---------------------------------------------CCCEEEecCCC----Cc
Confidence 44 6899999999873 02788888865 34
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
++++|+++|.+||+||+.+||||+||++|++|.|.|+.+|..
T Consensus 533 ~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~v 574 (693)
T 2xex_A 533 VPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDV 574 (693)
T ss_dssp SCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCC
Confidence 678899999999999999999999999999999999999976
No 18
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.4e-23 Score=253.47 Aligned_cols=224 Identities=18% Similarity=0.196 Sum_probs=154.2
Q ss_pred CceeEEecCCCcc--------ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccC
Q psy15088 214 TRNNNKCLPPGHV--------NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELK 285 (1291)
Q Consensus 214 ~~~~~liDtpG~~--------~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~ 285 (1291)
++.|.++||||+. .+..++..+++.||++|||+|+..|++..+.++++++++.++|+++|+||+|....+..
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~ 129 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN 129 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh
Confidence 6689999999986 46677889999999999999999999999999999999999999999999998642110
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCcccccccccccccccccc
Q psy15088 286 LPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLI 365 (1291)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i 365 (1291)
..+++. +|+ +..+..||.||.|.+ ++.+.+.
T Consensus 130 --~~~~~~---------------lg~---------------------~~~~~iSA~~g~gv~-----------~L~~~i~ 160 (436)
T 2hjg_A 130 --IYDFYS---------------LGF---------------------GEPYPISGTHGLGLG-----------DLLDAVA 160 (436)
T ss_dssp --CCSSGG---------------GSS---------------------CCCEECBTTTTBTHH-----------HHHHHHH
T ss_pred --HHHHHH---------------cCC---------------------CCeEEEeCcCCCChH-----------HHHHHHH
Confidence 011111 222 112678999988765 2322222
Q ss_pred ccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCcccccccccccccc
Q psy15088 366 APIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFT 445 (1291)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~ 445 (1291)
..+... ++. ...+...+|+++|++|+|||||+|+|++..+.++...
T Consensus 161 ~~l~~~---------~~~-----------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~-------------- 206 (436)
T 2hjg_A 161 EHFKNI---------PET-----------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-------------- 206 (436)
T ss_dssp HTGGGC---------CSS-----------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------------
T ss_pred HhcCcc---------ccc-----------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCC--------------
Confidence 211100 000 0123456999999999999999999998765544333
Q ss_pred ccccCceeeeccceecccccCCCCeEEEEEeCCCccc----------c---cccccccccceEEEEecCCCccchhhHhh
Q psy15088 446 EQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV----------T---LLLPDVKGKNYLMNIFDTPGMWDIHVRKF 512 (1291)
Q Consensus 446 E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~----------~---~~l~~~~~ad~~v~vida~~g~~~qt~~~ 512 (1291)
.|+|++.....+.+ ++..++|+||||+.. + +++..+..+|++++|+|+..+.+.|+.++
T Consensus 207 ---~gtT~d~~~~~~~~-----~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~ 278 (436)
T 2hjg_A 207 ---AGTTRDAVDTSFTY-----NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI 278 (436)
T ss_dssp ----------CCEEEEE-----TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred ---CCceeeeeEEEEEE-----CCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHH
Confidence 39999998888888 678899999999831 2 23456778999999999999999999999
Q ss_pred HHHHHhhcCccchhhhhh
Q psy15088 513 SKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 513 ~~~~~~~~~~~~fv~fil 530 (1291)
...+...++|.++ ++|
T Consensus 279 ~~~~~~~~~~iii--v~N 294 (436)
T 2hjg_A 279 AGYAHEAGKAVVI--VVN 294 (436)
T ss_dssp HHHHHHTTCEEEE--EEE
T ss_pred HHHHHHcCCcEEE--EEE
Confidence 8888888877765 566
No 19
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.88 E-value=2.4e-23 Score=263.82 Aligned_cols=147 Identities=20% Similarity=0.417 Sum_probs=107.6
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCccee-eeeCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF-AETPN 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~-~~s~n 78 (1291)
|.+||++|+++||++++.. +||||++|+|+||||||+|++|||++| ++++++|+|.|+|||||++.+..... .+...
T Consensus 424 l~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~g 502 (691)
T 1dar_A 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDVEGKFIRQTG 502 (691)
T ss_dssp ---------CCCCSCEEEC-----CEEEEESCCC---------CCCE-EEBTTTBCCCBCCEEECSSCEEEEEEEEECCS
T ss_pred HHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh-CceEEEeCCeEEEEEeeccceeeeeeeccccC
Confidence 5789999999999999999 899999999999999999999999999 89999999999999999987654332 23333
Q ss_pred CC---eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 79 KR---NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 79 ~~---~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
+| ++++++++|||++. .|.|+|.+.+ ..
T Consensus 503 g~~~~~~v~~~~ePl~~g~---------------------------------------------g~~f~~~~~g----~~ 533 (691)
T 1dar_A 503 GRGQYGHVKIKVEPLPRGS---------------------------------------------GFEFVNAIVG----GV 533 (691)
T ss_dssp SSCEEEEEEEEEEECCTTC---------------------------------------------CEEEEECCCT----TS
T ss_pred CCCceEEEEEEEEECCCCC---------------------------------------------CCEEeecccC----Cc
Confidence 44 68999999998730 2677888765 34
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
++++|+++|.+||+||+.+||||+||++|++|.|.|+.+|..
T Consensus 534 ~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~v 575 (691)
T 1dar_A 534 IPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEV 575 (691)
T ss_dssp SCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTT
T ss_pred CcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeecccc
Confidence 678899999999999999999999999999999999999976
No 20
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=4e-22 Score=237.76 Aligned_cols=275 Identities=20% Similarity=0.228 Sum_probs=189.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.||+++||+|||||||+++|++..... ........+.+|.+..|++||+|++.....+.+ +++.++|+|||||
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~--g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~~~iiDtpG~ 76 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEG--GGAKFKKYEEIDNAPEERARGITINAAHVEYST-----AARHYAHTDCPGH 76 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-----SSCEEEEEECSSH
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhc--CccccchhhhhhcCHHHHhcCcEEEeeeEEecc-----CCeEEEEEECCCh
Confidence 389999999999999999998753211 001112234589999999999999988776666 7899999999999
Q ss_pred cccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCCC
Q psy15088 481 PVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIH 558 (1291)
Q Consensus 481 ~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~~ 558 (1291)
..+. +...+..+|++|+|+|+..|..+|+++++..+...++|+++ .++| | +|... + .+.+..+..+
T Consensus 77 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~ii-vviN----K-~Dl~~-~-~~~~~~~~~~---- 144 (397)
T 1d2e_A 77 ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVV-VYVN----K-ADAVQ-D-SEMVELVELE---- 144 (397)
T ss_dssp HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEE-EEEE----C-GGGCS-C-HHHHHHHHHH----
T ss_pred HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEE-EEEE----C-cccCC-C-HHHHHHHHHH----
Confidence 7654 55667789999999999999999999999888888888642 2566 5 44321 0 0001111110
Q ss_pred cChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHHH
Q psy15088 559 MNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMA 638 (1291)
Q Consensus 559 l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l~ 638 (1291)
.+.+++..
T Consensus 145 ---------~~~~l~~~--------------------------------------------------------------- 152 (397)
T 1d2e_A 145 ---------IRELLTEF--------------------------------------------------------------- 152 (397)
T ss_dssp ---------HHHHHHHT---------------------------------------------------------------
T ss_pred ---------HHHHHHHc---------------------------------------------------------------
Confidence 01111000
Q ss_pred HHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhh----hhhhch-hHHHHH
Q psy15088 639 DKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNL----VKRFNA-EKSLVE 713 (1291)
Q Consensus 639 e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~----~~~~~g-~~~LLD 713 (1291)
-+.....|++..|+..+. ..|..| +..|++
T Consensus 153 ---------------------------------------------~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~ 187 (397)
T 1d2e_A 153 ---------------------------------------------GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLD 187 (397)
T ss_dssp ---------------------------------------------TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHH
T ss_pred ---------------------------------------------CCCcccCcEEEeehhhcccccCCCccCCcHHHHHH
Confidence 000112355566665542 112235 789999
Q ss_pred HHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCe
Q psy15088 714 MCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRL 793 (1291)
Q Consensus 714 ~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl 793 (1291)
.+.+++|.|.. +.++|+
T Consensus 188 ~l~~~~p~p~~---------------------------------------------------------------~~~~p~ 204 (397)
T 1d2e_A 188 AVDTYIPVPTR---------------------------------------------------------------DLEKPF 204 (397)
T ss_dssp HHHHHSCCCCC---------------------------------------------------------------CTTSCC
T ss_pred HHHHhCCCCCC---------------------------------------------------------------CCCCcE
Confidence 99999998742 123578
Q ss_pred EEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc-
Q psy15088 794 MVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE- 872 (1291)
Q Consensus 794 ~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~- 872 (1291)
.+.|.+++..++.|. +++|||++|+|++||+|.+++.+ .....+|++|... ..++++|.||++|++.
T Consensus 205 ~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~~~~-------~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l 272 (397)
T 1d2e_A 205 LLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFLGHS-------KNIRTVVTGIEMF----HKSLDRAEAGDNLGALV 272 (397)
T ss_dssp EEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEEETT-------EEEEEEEEEEEET----TEEESEEETTCEEEEEE
T ss_pred EEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEeCCC-------CCeEEEEEEEEEC----CcccCEecCCCceEEEe
Confidence 888888888877665 89999999999999999998742 1256788887543 3689999999999885
Q ss_pred -cCCC-cccccceeec
Q psy15088 873 -GIDQ-PIVKTSTITD 886 (1291)
Q Consensus 873 -Gl~~-~~~k~~Tl~~ 886 (1291)
|++. .+.++.++++
T Consensus 273 ~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 273 RGLKREDLRRGLVMAK 288 (397)
T ss_dssp SSCCGGGCCTTCEEES
T ss_pred cccchhccCceeEEeC
Confidence 7642 2345667765
No 21
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=5.6e-22 Score=239.04 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=104.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCc-------c------ccccccccccccccccCceeeeccceecccccC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------E------EKNLRYTDTLFTEQERGVSIKASPVTLLLPDVK 466 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------~------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 466 (1291)
.+||+|+||+|+|||||+++|++.++.+..... . -.-++++|..++|++||+|++.....|.+
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~---- 92 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET---- 92 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec----
Confidence 469999999999999999999999887654321 0 12245899999999999999999888877
Q ss_pred CCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccc-------hhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 GKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWD-------IHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~-------~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.|+|+|||||..+. +..++..+|++|+|+|+..|.. +|+++++..+...++|+++ .++|
T Consensus 93 -~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI-vviN 163 (439)
T 3j2k_7 93 -EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI-VLIN 163 (439)
T ss_pred -CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEE-EEee
Confidence 78899999999998664 6677788999999999998864 7999999999989998643 3555
No 22
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=1e-21 Score=243.55 Aligned_cols=337 Identities=14% Similarity=0.131 Sum_probs=211.1
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc-------------c
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD-------------V 465 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-------------~ 465 (1291)
+..+|+|+||+|||||||+++|++...... ..+|+|++.....+.|.. .
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~------------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR------------------EAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc------------------cCCceecccCeEEEeechhhhhcccccccccc
Confidence 346999999999999999999986532110 012444443222222100 0
Q ss_pred CCCCeEEEEEeCCCccccccc--ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCC
Q psy15088 466 KGKNYLMNIFDTPASPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGD 543 (1291)
Q Consensus 466 ~~~~~~~~liDTpGh~~~~~l--~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~ 543 (1291)
..+...++|+|||||..|..+ +.+..+|++|+|+|+..|+.+||...+..+...++|.++ ++| | +|.....
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIV--ViN----K-iDl~~~~ 138 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV--AAN----K-IDRIHGW 138 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEE--EEE----C-GGGSTTC
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEE--Eec----c-ccccccc
Confidence 012346999999999876643 345678999999999999999999999999888999766 777 5 5543211
Q ss_pred cc---CcHHHHHHHhCCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceee
Q psy15088 544 VD---SSLPAVLDQLGIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLI 620 (1291)
Q Consensus 544 ~~---~~l~~i~~~lg~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~li 620 (1291)
.. ..+.+...
T Consensus 139 ~~~~~~~~~e~sa------------------------------------------------------------------- 151 (594)
T 1g7s_A 139 RVHEGRPFMETFS------------------------------------------------------------------- 151 (594)
T ss_dssp CCCTTCCHHHHHT-------------------------------------------------------------------
T ss_pred ccccCCchHHHHH-------------------------------------------------------------------
Confidence 00 00100000
Q ss_pred cCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchh
Q psy15088 621 DGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKN 700 (1291)
Q Consensus 621 DGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~ 700 (1291)
.+.+.++..+.+.+.. +.+.+.+.+... +. ..++.. .....|+++.|+..+
T Consensus 152 -------~~~~~v~~~~~e~i~e------------i~~~L~e~gl~~--------e~-~~~l~~-~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 152 -------KQDIQVQQKLDTKVYE------------LVGKLHEEGFES--------ER-FDRVTD-FASQVSIIPISAITG 202 (594)
T ss_dssp -------TSCHHHHHHHHHHHHH------------HHHHHHHTTCEE--------EE-GGGCSC-TTTEEEEEECCTTTC
T ss_pred -------HhHHHHHHHHHHHHHH------------HHHHHHHcCcch--------HH-HHHHHh-ccCcceEEEEeccCC
Confidence 0011111111111000 000000000000 00 000000 134579999999999
Q ss_pred hhhhhchhHHHHHHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchh
Q psy15088 701 LVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDV 780 (1291)
Q Consensus 701 ~~~~~~g~~~LLD~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1291)
.|+..|++.+..++|+|....
T Consensus 203 -----~GI~eLl~~I~~~~~~~~~~~------------------------------------------------------ 223 (594)
T 1g7s_A 203 -----EGIPELLTMLMGLAQQYLREQ------------------------------------------------------ 223 (594)
T ss_dssp -----TTHHHHHHHHHHHHHHHCSGG------------------------------------------------------
T ss_pred -----CCchhHHHHHHhhccccchhh------------------------------------------------------
Confidence 899999999999887654310
Q ss_pred hhhhhccCCCCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEe-------
Q psy15088 781 ARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYE------- 853 (1291)
Q Consensus 781 ~~~~~~~d~~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~------- 853 (1291)
..+++++|+.++|++++.+++.|. ++++||++|+|++||.|.+.+.+ .....+|.+|+.+.
T Consensus 224 ----l~~~~~~p~~~~V~~~~~d~g~G~-v~~~rV~~G~Lk~Gd~v~~~~~~-------~~~~~rV~~i~~~~~~~elr~ 291 (594)
T 1g7s_A 224 ----LKIEEDSPARGTILEVKEETGLGM-TIDAVIYDGILRKDDTIAMMTSK-------DVISTRIRSLLKPRPLEEMRE 291 (594)
T ss_dssp ----GEECTTSBCEEEEEEEEEETTEEE-EEEEEEEESEEETTCEEEEEBSS-------SEEEEECCEEEEECCCC----
T ss_pred ----hccccCCCceeEEEEEEEeCCcEE-EEEEEEeeCEEeeCCEEEECCCC-------CceeEEEeEEEeccccchhhh
Confidence 012456799999999999987665 99999999999999999987531 11356899999873
Q ss_pred -cCceeeeceee--CCCeEEEccCCCcccccceeeccccCCc-----cccccCCCCCCCceEEEEEEeCCCCChhHHHHH
Q psy15088 854 -ARYKVEVNRVP--AGNWVLIEGIDQPIVKTSTITDLITNED-----MYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDG 925 (1291)
Q Consensus 854 -g~~~~~v~~a~--aGnIv~I~Gl~~~~~k~~Tl~~~~~~~~-----~~~~~~~~~~~~Pv~~vaIeP~~~~d~~kL~~~ 925 (1291)
+....++++|. ||+++++.||++... ++|++...++.. ...+..+... .+.+.+.|.+.....+..|.++
T Consensus 292 ~~~~~~~v~ea~~~aG~~v~~~~l~~~~~-Gd~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~ 369 (594)
T 1g7s_A 292 SRKKFQKVDEVVAAAGIKIVAPGIDDVMA-GSPLRVVTDPEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKI 369 (594)
T ss_dssp CCCSEEECSEEESSEEEEEECSSCTTBCT-TCEEEECSSHHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHH
T ss_pred ccCCceEccEEcCCCCcEEEEcccCCCCC-CCEEEecCCHHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHH
Confidence 66788999998 999999999988643 678876532100 0012222222 4556677778888888888888
Q ss_pred HHHH
Q psy15088 926 LRKV 929 (1291)
Q Consensus 926 L~~L 929 (1291)
|+++
T Consensus 370 l~~~ 373 (594)
T 1g7s_A 370 LRDM 373 (594)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8776
No 23
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=1.2e-21 Score=234.25 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=98.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...||+++||+|||||||+++|++....... .+.......+|.+..|++||+|++.....+.+ +++.++|+|||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~-~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~~~iiDtp 83 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENP-NVEVKDYGDIDKAPEERARGITINTAHVEYET-----AKRHYSHVDCP 83 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCT-TSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-----SSCEEEEEECC
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCc-cccccchhhccCCHHHHHcCCCEEeeeeEecc-----CCeEEEEEECC
Confidence 3469999999999999999999875211000 01111233689999999999999998777776 68999999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||..+. +...+..+|++|+|+|+..+..+|+++++..+...++|+++ .++|
T Consensus 84 G~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~ii-vviN 136 (405)
T 2c78_A 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV-VFMN 136 (405)
T ss_dssp CSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEE-EEEE
T ss_pred ChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEE-EEEE
Confidence 998764 55667788999999999999999999999999888988642 2566
No 24
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=3.7e-22 Score=242.41 Aligned_cols=224 Identities=17% Similarity=0.185 Sum_probs=159.0
Q ss_pred CceeEEecCCC--------ccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccC
Q psy15088 214 TRNNNKCLPPG--------HVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELK 285 (1291)
Q Consensus 214 ~~~~~liDtpG--------~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~ 285 (1291)
++.|.++|||| +..+..++..+++.||++|||+|++.|++..++++++++++.++|+++|+||+|....+.
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~- 148 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA- 148 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh-
Confidence 66899999999 555677788999999999999999999999999999999999999999999999763110
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCcccccccccccccccccc
Q psy15088 286 LPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLI 365 (1291)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i 365 (1291)
...++|. +|+ +..+..||.++.|.+ ++.+.+.
T Consensus 149 -~~~e~~~---------------lg~---------------------~~~~~iSA~~g~gv~-----------~L~~~i~ 180 (456)
T 4dcu_A 149 -NIYDFYS---------------LGF---------------------GEPYPISGTHGLGLG-----------DLLDAVA 180 (456)
T ss_dssp ---CCSGG---------------GSS---------------------SSEEECCTTTCTTHH-----------HHHHHHH
T ss_pred -hHHHHHH---------------cCC---------------------CceEEeecccccchH-----------HHHHHHH
Confidence 0011111 222 122677999887764 2222222
Q ss_pred ccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCcccccccccccccc
Q psy15088 366 APIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFT 445 (1291)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~ 445 (1291)
....... . ....+...+|+++|++|+|||||+++|++..+..+...+
T Consensus 181 ~~l~~~~-----~---------------~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~------------- 227 (456)
T 4dcu_A 181 EHFKNIP-----E---------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA------------- 227 (456)
T ss_dssp TTGGGSC-----S---------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------
T ss_pred hhccccc-----c---------------cccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCC-------------
Confidence 2111000 0 001234569999999999999999999977655544444
Q ss_pred ccccCceeeeccceecccccCCCCeEEEEEeCCCc----------ccc---cccccccccceEEEEecCCCccchhhHhh
Q psy15088 446 EQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS----------PVT---LLLPDVKGKNYLMNIFDTPGMWDIHVRKF 512 (1291)
Q Consensus 446 E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh----------~~~---~~l~~~~~ad~~v~vida~~g~~~qt~~~ 512 (1291)
|+|++.....+.+ ++..++|+||||+ ..+ +++..+..+|++++|+|+..++..|+.++
T Consensus 228 ----gtt~~~~~~~~~~-----~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~ 298 (456)
T 4dcu_A 228 ----GTTRDAVDTSFTY-----NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI 298 (456)
T ss_dssp --------CTTSEEEEE-----TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred ----CeEEEEEEEEEEE-----CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHH
Confidence 8999988888887 6889999999995 222 24456678899999999999999999999
Q ss_pred HHHHHhhcCccchhhhhh
Q psy15088 513 SKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 513 ~~~~~~~~~~~~fv~fil 530 (1291)
+..+...++|.++ ++|
T Consensus 299 ~~~~~~~~~~~il--v~N 314 (456)
T 4dcu_A 299 AGYAHEAGKAVVI--VVN 314 (456)
T ss_dssp HHHHHHTTCEEEE--EEE
T ss_pred HHHHHHcCCCEEE--EEE
Confidence 9999888888765 566
No 25
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=9.8e-22 Score=244.56 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=68.4
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCc-------cc------cccccccccccccccCceeeeccceeccc
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------EE------KNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------~~------~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
...++||+|+||+|||||||+++|++..+.+..... .. ...+++|.+++|++||+|++.....|.+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 455789999999999999999999998877654311 11 1256899999999999999999888877
Q ss_pred ccCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-----c--chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 464 DVKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-----W--DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-----~--~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. ++.++..+|++|+|+|+..| + .+||+.++..+...++|+++ .++|
T Consensus 253 ----~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iI-vviN 323 (592)
T 3mca_A 253 ----DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIV-VSVN 323 (592)
T ss_dssp ----------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEE-EEEE
T ss_pred ----CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEE-EEEe
Confidence 68999999999998665 66777889999999999874 5 89999999999999998653 3556
No 26
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=2.4e-21 Score=233.68 Aligned_cols=126 Identities=20% Similarity=0.233 Sum_probs=90.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------cccc------ccccccccccccccCceeeeccceeccccc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AEEK------NLRYTDTLFTEQERGVSIKASPVTLLLPDV 465 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~~~------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 465 (1291)
..+||+++||+|||||||+++|++..+.+.... +... -++++|.+++|++||+|++.....+.+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--- 81 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--- 81 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC---
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec---
Confidence 357999999999999999999998865443211 0001 125789999999999999999888777
Q ss_pred CCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-------cchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 466 KGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-------WDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 466 ~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-------~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. +...+..+|++|+|+|+..| +.+|+++++..+...++++++ .++|
T Consensus 82 --~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~ii-vviN 152 (435)
T 1jny_A 82 --KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLI-VAVN 152 (435)
T ss_dssp --SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCE-EEEE
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEE-EEEE
Confidence 78999999999998764 56677789999999999998 788999999998888887652 3566
No 27
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.85 E-value=1.7e-21 Score=246.02 Aligned_cols=143 Identities=20% Similarity=0.293 Sum_probs=122.8
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCccee-eeeCC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCF-AETPN 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~-~~s~n 78 (1291)
|.+||++|+++||++++.. +||||++|+|+||||||+|+++|+ +| ++++++|+|.|+|||||++.+..... .+...
T Consensus 398 l~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~-~v~v~~~~p~V~yrEti~~~~~~~~~~~k~~g 475 (665)
T 2dy1_A 398 LGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY-GVEVEFSVPKVPYRETIKKVAEGQGKYKKQTG 475 (665)
T ss_dssp HHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT-TCCEEEECCCCCCEEEESSCEEEEEEEEEEET
T ss_pred HHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC-CceEEEeCCEEEEEEeeccceeeeeecccccC
Confidence 4689999999999999999 789999999999999999999999 99 99999999999999999886653322 23334
Q ss_pred CC---eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCccccc
Q psy15088 79 KR---NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKG 155 (1291)
Q Consensus 79 ~~---~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~ 155 (1291)
+| .+++++++||| .|.|.|.+.+. .
T Consensus 476 g~g~~~~v~~~~eP~~------------------------------------------------g~~f~~~~~~g----~ 503 (665)
T 2dy1_A 476 GHGQYGDVWLRLEPAS------------------------------------------------EYGFEWRITGG----V 503 (665)
T ss_dssp TEEEEEEEEEEEEECS------------------------------------------------SCEEEECCCTT----S
T ss_pred CCcceEEEEEEEEECC------------------------------------------------CCEEeeeccCC----c
Confidence 44 56899999987 15666766542 3
Q ss_pred chhhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 156 LLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 156 ~~~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
..++|.++|.+||+||+.+||||++|++|++|.|.|+.+|..
T Consensus 504 ~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ 545 (665)
T 2dy1_A 504 IPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEV 545 (665)
T ss_dssp SCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTT
T ss_pred chHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCC
Confidence 457789999999999999999999999999999999999976
No 28
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=1.2e-20 Score=221.98 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=81.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
||+++||+|||||||+++|+ +||+|++.....+.+ +++.++|+|||||.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~-----~~~~i~iiDtPGh~ 71 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDK-----EGRNMVFVDAHSYP 71 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECS-----SSSEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEec-----CCeEEEEEECCChH
Confidence 99999999999999999987 469999988887777 67889999999998
Q ss_pred ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccc
Q psy15088 482 VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 482 ~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
.+. ++.++..+|++|+|+| ..|+.+||++++..+...++|++
T Consensus 72 ~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ 115 (370)
T 2elf_A 72 KTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHG 115 (370)
T ss_dssp TCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeE
Confidence 764 5667788999999999 88999999999999988898883
No 29
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=1.4e-20 Score=240.63 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=174.8
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
....||+++||+|||||||+++|++...... .......+.+|.+..|++||+|++...+.+.+ +++.++|+||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G--~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-----~~~kI~IIDT 366 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPEEKARGITINTSHVEYDT-----PTRHYAHVDC 366 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHS--CC---------------------CCSCEEEEC-----SSCEEEEEEC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhcccc--ccccccccccccccccccCceeEEEEEEEEcC-----CCEEEEEEEC
Confidence 3457999999999999999999987531100 00111233689999999999999998777766 7899999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHh
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQL 555 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~l 555 (1291)
|||..+. +...+..+|++|+|+|+..|..+||++++..+...++|+++ .++| | +|... + .+.+..+...
T Consensus 367 PGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~II-VVIN----K-iDLv~-d-~e~le~i~eE- 437 (1289)
T 3avx_A 367 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII-VFLN----K-CDMVD-D-EELLELVEME- 437 (1289)
T ss_dssp CCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEE-EEEE----C-CTTCC-C-HHHHHHHHHH-
T ss_pred CChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEE-EEEe----e-ccccc-c-hhhHHHHHHH-
Confidence 9998664 55667789999999999999999999999988888988642 2566 5 34321 0 0001111110
Q ss_pred CCCcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHH
Q psy15088 556 GIHMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNK 635 (1291)
Q Consensus 556 g~~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~ 635 (1291)
.+.+++..
T Consensus 438 ------------i~elLk~~------------------------------------------------------------ 445 (1289)
T 3avx_A 438 ------------VRELLSQY------------------------------------------------------------ 445 (1289)
T ss_dssp ------------HHHHHHHT------------------------------------------------------------
T ss_pred ------------HHHHHHhc------------------------------------------------------------
Confidence 01111000
Q ss_pred HHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchh---hhhhhchhHHHH
Q psy15088 636 EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKN---LVKRFNAEKSLV 712 (1291)
Q Consensus 636 ~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~---~~~~~~g~~~LL 712 (1291)
-+.....|++..|+..+ ...|..|+..|+
T Consensus 446 ------------------------------------------------G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLl 477 (1289)
T 3avx_A 446 ------------------------------------------------DFPGDDTPIVRGSALKALEGDAEWEAKILELA 477 (1289)
T ss_dssp ------------------------------------------------TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHH
T ss_pred ------------------------------------------------cccccceeEEEEEeccCCCCCccccccchhhH
Confidence 00111245566666554 122345788999
Q ss_pred HHHHhhCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCC
Q psy15088 713 EMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGR 792 (1291)
Q Consensus 713 D~Iv~~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 792 (1291)
+.+.+++|.|... .++|
T Consensus 478 eaL~~~Ip~P~r~---------------------------------------------------------------~d~P 494 (1289)
T 3avx_A 478 GFLDSYIPEPERA---------------------------------------------------------------IDKP 494 (1289)
T ss_dssp HHHHHTSCCCCCG---------------------------------------------------------------GGSC
T ss_pred hHHhhhcCCCccc---------------------------------------------------------------cccc
Confidence 9999999977421 1246
Q ss_pred eEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 793 LMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 793 l~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
+.+.|..++..++.|. +++|||++|+|++||+|.+.+.+ .....+|++|... ..++++|.||++|++.
T Consensus 495 fr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ps~-------~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~ 562 (1289)
T 3avx_A 495 FLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVGIK-------ETQKSTCTGVEMF----RKLLDEGRAGENVGVL 562 (1289)
T ss_dssp CEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEESSS-------SCEEEEEEEEECS----SCEESEEETTCEEEEE
T ss_pred eeeeccccccccCCcE-EEEEEEeccEEecCCEEEEecCC-------CceeEEEEEEeec----CceeeEEecCCcceeE
Confidence 7777777777777665 89999999999999999998742 1256788888532 4678999999999874
Q ss_pred --cCCC-cccccceeec
Q psy15088 873 --GIDQ-PIVKTSTITD 886 (1291)
Q Consensus 873 --Gl~~-~~~k~~Tl~~ 886 (1291)
|++. .+.++.++++
T Consensus 563 L~GI~~~dI~RGdVL~~ 579 (1289)
T 3avx_A 563 LRGIKREEIERGQVLAK 579 (1289)
T ss_dssp ESSCCGGGCCTTCEEES
T ss_pred eeecchhcCCcccEEec
Confidence 6642 2344667765
No 30
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=6.4e-21 Score=230.43 Aligned_cols=247 Identities=13% Similarity=0.140 Sum_probs=162.3
Q ss_pred CCCccccccCCCceeeecCceeEEecCCCccc---------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc
Q psy15088 196 SSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVN---------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE 266 (1291)
Q Consensus 196 t~as~~~~~~~~~~~ii~~~~~~liDtpG~~~---------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~ 266 (1291)
..+++|++.......+- ++.|.++||||+.. +..++..+++.||++|||+|++.|++..++.+.+++++.
T Consensus 31 ~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~ 109 (439)
T 1mky_A 31 DEEGVTRDPVQDTVEWY-GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS 109 (439)
T ss_dssp -------CCSEEEEEET-TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCccceeeEEEEEC-CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34556666655544442 77899999999764 345678899999999999999999999999999999999
Q ss_pred CCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCC
Q psy15088 267 KMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGP 346 (1291)
Q Consensus 267 ~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~ 346 (1291)
++|+++|+||+|.... .. .++..-+..+|+.+ .+..||.||.|.
T Consensus 110 ~~p~ilv~NK~D~~~~--------~~-------~~~~~~~~~lg~~~---------------------~~~iSA~~g~gv 153 (439)
T 1mky_A 110 TVDTILVANKAENLRE--------FE-------REVKPELYSLGFGE---------------------PIPVSAEHNINL 153 (439)
T ss_dssp TCCEEEEEESCCSHHH--------HH-------HHTHHHHGGGSSCS---------------------CEECBTTTTBSH
T ss_pred CCCEEEEEeCCCCccc--------cH-------HHHHHHHHhcCCCC---------------------EEEEeccCCCCH
Confidence 9999999999997531 00 01100111234311 167899998876
Q ss_pred CccccccccccccccccccccccccccccccccCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCC
Q psy15088 347 DVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHP 426 (1291)
Q Consensus 347 ~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~ 426 (1291)
+ ++.+.+...+........+. ...+...+|+|+|++|+|||||+++|++....
T Consensus 154 ~-----------~L~~~i~~~l~~~~~~~~~~----------------~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~ 206 (439)
T 1mky_A 154 D-----------TMLETIIKKLEEKGLDLESK----------------PEITDAIKVAIVGRPNVGKSTLFNAILNKERA 206 (439)
T ss_dssp H-----------HHHHHHHHHHHHTTCCSSSC----------------CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred H-----------HHHHHHHHhcccccccchhc----------------cccccCceEEEECCCCCCHHHHHHHHhCCccc
Confidence 4 23222222111000000000 00123469999999999999999999988765
Q ss_pred cccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcccc--------------ccccccccc
Q psy15088 427 GYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVT--------------LLLPDVKGK 492 (1291)
Q Consensus 427 i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~--------------~~l~~~~~a 492 (1291)
+++..+ |+|++.....+.+ ++..+.++||||.... +.+..+..+
T Consensus 207 ~v~~~~-----------------gtT~d~~~~~i~~-----~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a 264 (439)
T 1mky_A 207 LVSPIP-----------------GTTRDPVDDEVFI-----DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA 264 (439)
T ss_dssp EECCCC-----------------------CCEEEEE-----TTEEEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred ccCCCC-----------------CCcCCceEEEEEE-----CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence 555555 8999888888888 6889999999997311 123445678
Q ss_pred ceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 493 NYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 493 d~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|++++++|+..+.+.++.++.......++|.++ .+|
T Consensus 265 d~vllv~d~~~~~~~~~~~i~~~l~~~~~~~il--v~N 300 (439)
T 1mky_A 265 DVVVIVLDATQGITRQDQRMAGLMERRGRASVV--VFN 300 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEE--EEE
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 999999999999888888877777777777765 555
No 31
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=7.9e-20 Score=221.49 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=99.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------cc--c----cccccccccccccccCceeeeccceeccccc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AE--E----KNLRYTDTLFTEQERGVSIKASPVTLLLPDV 465 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~--~----~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 465 (1291)
...||+++||+|||||||+++|++..+.+.... +. . .-+.++|...+|++||+|++.....|.+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--- 82 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--- 82 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC---
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec---
Confidence 346999999999999999999998754432110 00 0 1134789999999999999999887776
Q ss_pred CCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccch-------hhHhhHHHHHhhcCccchhhhhh
Q psy15088 466 KGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDI-------HVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 466 ~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~-------qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. +...+..+|++|+|+|+..+..+ |+++++..+...++|+++ .++|
T Consensus 83 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~ii-vviN 153 (458)
T 1f60_A 83 --PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLI-VAVN 153 (458)
T ss_dssp --SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEE-EEEE
T ss_pred --CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEE-EEEE
Confidence 78999999999998764 56677789999999999988655 999999888888887543 3566
No 32
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=4.7e-20 Score=222.45 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=93.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCc-------cc--------cccccccccccccccCceeeeccceeccc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPA-------EE--------KNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~-------~~--------~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
..+||+++||+|||||||+++|++..+.+..... .. ....++|.+++|++||+|++.....+.+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~- 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence 3569999999999999999999988765543210 00 1124689999999999999988777766
Q ss_pred ccCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 464 DVKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. +...+..+|++|+|+|+..++.+|+++++..+...++++++ .++|
T Consensus 102 ----~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iI-vviN 165 (434)
T 1zun_B 102 ----AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIV-VAIN 165 (434)
T ss_dssp ----SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE-EEEE
T ss_pred ----CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE-EEEE
Confidence 78999999999998764 55567789999999999999999999999888888876543 2455
No 33
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=6.1e-20 Score=223.00 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=76.9
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------ccc------cccccccccccccccCceeeeccceecccc
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------AEE------KNLRYTDTLFTEQERGVSIKASPVTLLLPD 464 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~~~------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 464 (1291)
....||+++||+|||||||+++|++.++.+.... ... .-.+++|.+++|++||+||+.....|.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 3457999999999999999999998776543110 000 1245789999999999999999888877
Q ss_pred cCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCcc-------chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 465 VKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW-------DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 465 ~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~-------~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.|+|+|||||..+. +...+..+|++|+|+|+..|. .+|+++++..+...++|+++ .++|
T Consensus 119 ---~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~ii-vviN 189 (467)
T 1r5b_A 119 ---EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLV-VVIN 189 (467)
T ss_dssp ---SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEE-EEEE
T ss_pred ---CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEE-EEEE
Confidence 68999999999998765 666778899999999999885 37999999998888888542 3566
No 34
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=7.2e-20 Score=223.72 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=89.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------c------cccccccccccccccccCceeeeccceeccccc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------A------EEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV 465 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------~------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 465 (1291)
...||+++||+|+|||||+++|++..+.+.... + .....+++|....|++||+|++.....|.+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--- 108 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--- 108 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec---
Confidence 346999999999999999999999876543210 0 012356799999999999999999888877
Q ss_pred CCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-------cchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 466 KGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-------WDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 466 ~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-------~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. +...+..+|++|+|+|+..| +.+|++.+...+...++++++ .++|
T Consensus 109 --~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iI-vviN 179 (483)
T 3p26_A 109 --HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLI-IAMN 179 (483)
T ss_dssp --SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEE-EEEE
T ss_pred --CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEE-EEEE
Confidence 78999999999998665 56677789999999999987 578999999998888877543 3555
No 35
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.81 E-value=4e-19 Score=212.87 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=88.3
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc------C------
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV------K------ 466 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------~------ 466 (1291)
..+||+++||+|||||||+++|++. .+|...+|++||+|++.....+.+... .
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~---------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 73 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC---------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC---------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccc
Confidence 3579999999999999999999743 246778899999999877555444210 0
Q ss_pred --CC----CeEEEEEeCCCccccc--ccccccccceEEEEecCCCcc-chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 --GK----NYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW-DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 --~~----~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~-~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
++ .+.++|+|||||..+. ++..+..+|++|+|+|+..|+ .+||++++..+...+.++++ .++|
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~ii-vviN 145 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNII-IAQN 145 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE-EEEE
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEE-EEEE
Confidence 11 2789999999998654 566777889999999999997 89999998887777776543 2455
No 36
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.9e-19 Score=222.94 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=103.5
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCC-------------ccccccccccccccccccCceeeeccceeccc
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQP-------------AEEKNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~-------------~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
.....||+|+||+|+|||||+++|++..+.+.... ......+++|....|++||+|++.....+.+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 34456999999999999999999998876554320 0112356899999999999999999888887
Q ss_pred ccCCCCeEEEEEeCCCccccc--ccccccccceEEEEecCCCc-------cchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 464 DVKGKNYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGM-------WDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g-------~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+++.++|+|||||..+. ++..+..+|++|+|+|+..| +.+|++.+...+...++++++ .++|
T Consensus 243 ----~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iI-VVvN 313 (611)
T 3izq_1 243 ----HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLI-IAMN 313 (611)
T ss_dssp ----SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEE-EEEE
T ss_pred ----CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEE-EEEe
Confidence 78999999999998654 66777889999999999876 468999999888888887653 3455
No 37
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.79 E-value=1.5e-20 Score=236.28 Aligned_cols=146 Identities=22% Similarity=0.355 Sum_probs=119.3
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeeeeeccCCcceeeee-CC
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAET-PN 78 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frETi~~~~~~~~~~~s-~n 78 (1291)
|.+||++|+++||++++.. ++|||++|+|+||||||+|+++||++| |+++++|+|.|+|||||++.++..+...+ ++
T Consensus 360 L~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef-gvev~~~~P~V~yrEti~~~~~~~~~~~~~~~ 438 (638)
T 3j25_A 360 LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY-HVEIELKEPTVIYMERPLKNAEYTIHIEVPPN 438 (638)
T ss_dssp HHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT-CCCCEEECCCCCCCBCCCSCCEECCCCCSSSC
T ss_pred HHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh-CCcEEEeCCceeEEEEecccceEEEEEecCCC
Confidence 5789999999999999998 789999999999999999999999999 99999999999999999987653332222 22
Q ss_pred CC-eEEEEEEEeCChhHHHHHHcccccccccHHHHHHHHhhhcCcchhccCeEEEeccCCCCCeEEEcCCCCCcccccch
Q psy15088 79 KR-NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLL 157 (1291)
Q Consensus 79 ~~-~~~~~~~~Pl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fgp~~~g~Nil~~~t~~~~~~~~~~ 157 (1291)
++ ++++++++|++.+- | +.|.|.+.+ ..+.
T Consensus 439 ~~~~~v~~~~eP~~~~~--------------------------g-------------------~~f~~~~~~----~~~~ 469 (638)
T 3j25_A 439 PFWASIGLSVSPLPLGS--------------------------G-------------------MQYESSVSL----GYLN 469 (638)
T ss_dssp CCCCCCCEECCCCCSSC--------------------------C-------------------CCCCCCCCS----SSTT
T ss_pred CceEEEEEEEecccCCC--------------------------C-------------------cEEEeeeec----ccch
Confidence 22 67777888876531 1 122233322 2356
Q ss_pred hhHHHHHHhhhccccccCCCCCcccccceeEEecccccCC
Q psy15088 158 GSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSS 197 (1291)
Q Consensus 158 ~~~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~ 197 (1291)
++|.++|.+||+||+.+| ||++|++|++|.|.|+.+|..
T Consensus 470 ~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~ 508 (638)
T 3j25_A 470 QSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSP 508 (638)
T ss_dssp HHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSC
T ss_pred hhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCC
Confidence 889999999999999999 999999999999999999977
No 38
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=1.9e-18 Score=206.82 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=80.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc------c------C-
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD------V------K- 466 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~------~------~- 466 (1291)
..||+++||+|||||||+++|.+. .+|....|++||+|++.....+.+.. + .
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~---------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~ 72 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGV---------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPN 72 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSC---------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCC---------------ccccCcccccCCcEEEecccccccccccccccccccccccc
Confidence 469999999999999999999743 24667789999999987644332210 0 0
Q ss_pred -CC----CeEEEEEeCCCccccc--ccccccccceEEEEecCCCcc-chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 467 -GK----NYLMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW-DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 467 -~~----~~~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~-~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
++ .+.++|+|||||..+. +++.+..+|++|+|+|+..++ .+||++++..+...+.++++ .++|
T Consensus 73 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~ii-vv~N 143 (408)
T 1s0u_A 73 CLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKII-IVQN 143 (408)
T ss_dssp SCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEE-EEEE
T ss_pred cCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEE-EEEE
Confidence 11 2789999999998654 566777889999999999997 89999988877767765542 3555
No 39
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.77 E-value=1.6e-19 Score=218.45 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=87.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+.++|+|+||+|||||||+++|....-. ....+|+|++.....+.+ +++.++|+|||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~------------------~~e~~GIT~~i~~~~v~~-----~~~~i~~iDTP 59 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA------------------SGEAGGITQHIGAYHVET-----ENGMITFLDTP 59 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS------------------BTTBCCCCCCSSCCCCCT-----TSSCCCEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc------------------cccCCCeeEeEEEEEEEE-----CCEEEEEEECC
Confidence 5679999999999999999999864211 112369999988777777 67889999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||..|. +.+.+..+|++++|+|+..|+.+||+.++..+...++|.++ ++|
T Consensus 60 Ghe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIV--viN 111 (501)
T 1zo1_I 60 GHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVV--AVN 111 (501)
T ss_dssp TTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEE--EEE
T ss_pred CcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEE--EEE
Confidence 998765 44566788999999999999999999999998888888654 676
No 40
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=2e-18 Score=210.52 Aligned_cols=254 Identities=15% Similarity=0.140 Sum_probs=177.8
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
...|+++||+|||||||+++|.+.... .+..+|+|++.....+.++ +++.++|+||||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~------------------~~~~~giT~~i~~~~v~~~----~g~~i~~iDTPG 61 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA------------------AMEAGGITQHIGAFLVSLP----SGEKITFLDTPG 61 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH------------------HSSSCCBCCCTTSCCBCSS----CSSCCBCEECSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc------------------cccCCceeEEEeEEEEEeC----CCCEEEEEECCC
Confidence 457999999999999999999866421 1223488888776666553 467899999999
Q ss_pred ccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCCccCcHHHHHHHhCC
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGI 557 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~~~~~l~~i~~~lg~ 557 (1291)
|..+. +.+.+..+|++|+|+|+..|..+|+..++..+...++|.++ ++| | +|....+.+.....+ ..+
T Consensus 62 he~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIV--ViN----K-iDl~~~~~~~v~~~l-~~~-- 131 (537)
T 3izy_P 62 HAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVL--AIN----K-CDKAEADPEKVKKEL-LAY-- 131 (537)
T ss_dssp SCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEE--CCB----S-GGGTTTSCCSSSSHH-HHT--
T ss_pred hHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEE--EEe----c-ccccccchHHHHHHH-Hhh--
Confidence 98665 44466788999999999999999999999999988988654 666 5 443211111000000 000
Q ss_pred CcChhhhhcCchHHHHHHHhhccccccCCCccccccccccccccCceEEcccccccccCceeecCCCCccCccchHHHHH
Q psy15088 558 HMNKEESKINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEM 637 (1291)
Q Consensus 558 ~l~~~~~~~~~~~~l~~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~liDll~~~~i~~~~~liDGfPr~~~qa~~~~~~l 637 (1291)
++..+
T Consensus 132 -----------------------------------------------------------~~~~e---------------- 136 (537)
T 3izy_P 132 -----------------------------------------------------------DVVCE---------------- 136 (537)
T ss_dssp -----------------------------------------------------------TSCCC----------------
T ss_pred -----------------------------------------------------------hhhHH----------------
Confidence 00000
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhHHHHHHHHh
Q psy15088 638 ADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVK 717 (1291)
Q Consensus 638 ~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~LLD~Iv~ 717 (1291)
.+ ....|++..|+..+ .|+..|++.+..
T Consensus 137 ----------------------------------------------~~-~~~~~iv~vSAktG-----~GI~eLle~I~~ 164 (537)
T 3izy_P 137 ----------------------------------------------DY-GGDVQAVHVSALTG-----ENMMALAEATIA 164 (537)
T ss_dssp ----------------------------------------------CS-SSSEEECCCCSSSS-----CSSHHHHHHHHH
T ss_pred ----------------------------------------------hc-CCCceEEEEECCCC-----CCchhHHHHHHH
Confidence 00 11246667788888 889999999887
Q ss_pred hCCCCccchhhhhhcccCCCCCchhhhhhhccCCcccccccccccccccccccccCCCCCchhhhhhhccCCCCCeEEEE
Q psy15088 718 HIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHS 797 (1291)
Q Consensus 718 ~lPsP~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V 797 (1291)
.++.+.. ..++++|+.+.|
T Consensus 165 l~~~~~~-------------------------------------------------------------~~~~~~~~~~~V 183 (537)
T 3izy_P 165 LAEMLEL-------------------------------------------------------------KADPTGAVEGTV 183 (537)
T ss_dssp HHTTCCC-------------------------------------------------------------CCCSSSSEEEEE
T ss_pred hhhcccc-------------------------------------------------------------cCCCCCCcceeE
Confidence 6543310 013456888999
Q ss_pred EeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeEEEccCCCc
Q psy15088 798 SKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQP 877 (1291)
Q Consensus 798 ~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~Gl~~~ 877 (1291)
.+.+.+++.|. ++.+||++|+|++||.|. .++ ...+|..++...| .++++|.||++|+|.|+++.
T Consensus 184 ~e~~~~~g~G~-V~~g~V~~G~l~~Gd~v~-~g~----------~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~ 248 (537)
T 3izy_P 184 IESFTDKGRGP-VTTAIIQRGTLRKGSILV-AGK----------SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDL 248 (537)
T ss_dssp EEECCCTTCCC-CEEEEEEEECCSSEEEEC-CSS----------CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEE
T ss_pred EEEEEeCCCce-EEEEEEecCEEEcCCEEE-eCC----------ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCC
Confidence 99999988765 999999999999999873 332 2356777664433 67999999999999999875
Q ss_pred ccccceeeccc
Q psy15088 878 IVKTSTITDLI 888 (1291)
Q Consensus 878 ~~k~~Tl~~~~ 888 (1291)
...+++++...
T Consensus 249 ~~~Gd~l~~~~ 259 (537)
T 3izy_P 249 PSAGDEILEVE 259 (537)
T ss_dssp EEEESSCCSCC
T ss_pred CCCCCEEEecC
Confidence 55567777653
No 41
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.75 E-value=6.5e-19 Score=214.55 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=80.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..||+++||+|||||||+++|.+.. ....+|....|++||+|++.....+.+ +++.++|+||||
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~-----------~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~i~iiDtPG 82 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITIDIGFSAFKL-----ENYRITLVDAPG 82 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEE-----TTEEEEECCCSS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCC-----------cccccccccccccCccEEecceEEEEE-----CCEEEEEEECCC
Confidence 3599999999999999999997543 134678899999999999998888877 689999999999
Q ss_pred ccccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|..+. ++..+..+|++|+|+|+..|+.+|+++++..+...++|.++ ++|
T Consensus 83 h~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~Iv--viN 133 (482)
T 1wb1_A 83 HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIV--VIT 133 (482)
T ss_dssp HHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCE--EEE
T ss_pred hHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEE--EEE
Confidence 98654 55667788999999999999999999999988888888854 566
No 42
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.75 E-value=2.8e-17 Score=196.39 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=88.2
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..||+++||+|||||||+++|++...... ......+.......+..++++.+.....+.+.+.....+.++|+||||
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKK---LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccc---cCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 34999999999999999999987532211 001112222223445567777766555444432233448999999999
Q ss_pred ccccc--ccccccccceEEEEecCCCcc-chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVTL--LLPDVKGKNYLMNIFDTPGMW-DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~--~l~~~~~ad~~v~vida~~g~-~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|..+. ++..+..+|++++|+|+..+. .+|+++++..+...+.++++ .++|
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~ii-vviN 137 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLI-IVQN 137 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE-EEEE
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEE-EEEE
Confidence 98665 566677899999999999997 89999999888777775542 3555
No 43
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=3.5e-16 Score=192.78 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=72.1
Q ss_pred ccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC
Q psy15088 173 REGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252 (1291)
Q Consensus 173 ~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~ 252 (1291)
-++-+..|+.||||+. ++.+++.|+ +++|||||||||.||..++.+||+.+|+||+||||.+|+
T Consensus 74 ~~D~~~~EreRGITI~--------s~~~~~~~~--------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV 137 (548)
T 3vqt_A 74 TSDWMAMERERGISVT--------TSVMQFPYR--------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV 137 (548)
T ss_dssp --------------CT--------TTEEEEEET--------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS
T ss_pred ccCChHHHHHCCCcEe--------eceEEEEEC--------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCc
Confidence 3555778999999996 444555553 568999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 253 MLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++||+.+|++|++.++|+|+||||||+..
T Consensus 138 ~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 138 EAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred ccccHHHHHHHHHhCCceEEEEecccchh
Confidence 99999999999999999999999999985
No 44
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.42 E-value=3.6e-13 Score=162.20 Aligned_cols=150 Identities=12% Similarity=0.108 Sum_probs=121.0
Q ss_pred HHHHHHhhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhc
Q psy15088 160 VKDSIVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLC 239 (1291)
Q Consensus 160 ~~~si~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~ 239 (1291)
.++.-..+|.+|+..+-+.+|+.+|+++++....+... +++|+++|||||.+|..++..+++.|
T Consensus 56 ~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~----------------~~~~~iiDTPGh~~f~~~~~~~~~~a 119 (439)
T 3j2k_7 56 AKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE----------------KKHFTILDAPGHKSFVPNMIGGASQA 119 (439)
T ss_pred HHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC----------------CeEEEEEECCChHHHHHHHHhhHhhC
Confidence 33444556888888888999999999999887777655 56899999999999999999999999
Q ss_pred CcEEEEEECCCCCc-------hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 240 DGVVLFVDAAEGVM-------LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 240 D~~l~vVD~~~g~~-------~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
|++|||||+.+|+. +|+++++..++..++| +|+|+||||+...+ ....+++++.+++..++..+|+
T Consensus 120 D~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~------~~~~~~~~i~~~~~~~l~~~g~ 193 (439)
T 3j2k_7 120 DLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN------WSNERYEECKEKLVPFLKKVGF 193 (439)
T ss_pred CEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc------hHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999987 8999999999999999 88999999986321 1234567788888888888887
Q ss_pred CCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 312 DDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 312 ~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
... ...++ ++.||.+|.|.+
T Consensus 194 ~~~---------~~~~~-------i~iSA~~G~ni~ 213 (439)
T 3j2k_7 194 NPK---------KDIHF-------MPCSGLTGANLK 213 (439)
T ss_pred ccc---------CCeeE-------EEeeccCCcccc
Confidence 421 01122 678999887764
No 45
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.33 E-value=2.3e-12 Score=145.87 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=96.2
Q ss_pred cCCCcc-ccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHH
Q psy15088 221 LPPGHV-NFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHII 299 (1291)
Q Consensus 221 DtpG~~-~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~ 299 (1291)
+-|||. ....++...+..+|++++||||+.+.......+.+++ .++|+++|+||+|+... + ..+.+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~-------~---~~~~~~ 72 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA-------A---VTQQWK 72 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH-------H---HHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH-------H---HHHHHH
Confidence 469997 4678899999999999999999998888766666665 58999999999998631 1 111111
Q ss_pred HHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCcccccccccccccccccccccccccccccccc
Q psy15088 300 DEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQD 379 (1291)
Q Consensus 300 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~ 379 (1291)
..+...|+ ++ ++.||.++.|.. .+.+.+.+-+..+.
T Consensus 73 ----~~~~~~g~---------------~~-------i~iSA~~~~gi~-----------~L~~~i~~~l~~~~------- 108 (282)
T 1puj_A 73 ----EHFENQGI---------------RS-------LSINSVNGQGLN-----------QIVPASKEILQEKF------- 108 (282)
T ss_dssp ----HHHHTTTC---------------CE-------EECCTTTCTTGG-----------GHHHHHHHHHHHHH-------
T ss_pred ----HHHHhcCC---------------cE-------EEEECCCcccHH-----------HHHHHHHHHHHHHH-------
Confidence 12222221 11 566887766553 11111100000000
Q ss_pred CCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccce
Q psy15088 380 LPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459 (1291)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~ 459 (1291)
+... -.....+..+|+++|.+|+|||||+|+|++.....+...+ |+|++...+.
T Consensus 109 --------~~~~-~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~-----------------g~T~~~~~~~ 162 (282)
T 1puj_A 109 --------DRMR-AKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP-----------------GITTSQQWVK 162 (282)
T ss_dssp --------HHHH-HTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-----------------------------CCEE
T ss_pred --------HHHH-hcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCC-----------------CeeeeeEEEE
Confidence 0000 0000123358999999999999999999977655444333 7777654322
Q ss_pred ecccccCCCCeEEEEEeCCCcc
Q psy15088 460 LLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 460 ~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+ +..+.++||||..
T Consensus 163 ~--------~~~~~l~DtpG~~ 176 (282)
T 1puj_A 163 V--------GKELELLDTPGIL 176 (282)
T ss_dssp E--------TTTEEEEECCCCC
T ss_pred e--------CCCEEEEECcCcC
Confidence 1 3368999999974
No 46
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.28 E-value=3.8e-12 Score=154.48 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=80.0
Q ss_pred hhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEE
Q psy15088 166 QGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLF 245 (1291)
Q Consensus 166 ~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~v 245 (1291)
.+|.+++..+-+.+|+.+|+|+++....+... +++|+|+|||||.+|..++..+++.+|++|||
T Consensus 88 ~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilV 151 (467)
T 1r5b_A 88 ESWYLSWALDSTSEEREKGKTVEVGRAYFETE----------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLV 151 (467)
T ss_dssp -------------------------CCEEECS----------------SEEEEECCCCC-----------TTSCSEEEEE
T ss_pred cchhhhhhcccchhhhhcCceEEeeeEEEecC----------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEE
Confidence 45667777788889999999998765544333 56899999999999999999999999999999
Q ss_pred EECCCCCc-------hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHh-cCCCCcC
Q psy15088 246 VDAAEGVM-------LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYL-LIDDDRE 316 (1291)
Q Consensus 246 VD~~~g~~-------~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 316 (1291)
||+.+|+. +|+++++..++..++| +|+|+||||+...++ + ..+++.+.+++...+..+ |+..
T Consensus 152 vDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~--~----~~~~~~i~~e~~~~l~~~~g~~~--- 222 (467)
T 1r5b_A 152 ISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW--S----EERYKECVDKLSMFLRRVAGYNS--- 222 (467)
T ss_dssp EECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS--C----HHHHHHHHHHHHHHHHHHHCCCH---
T ss_pred EeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc--c----HHHHHHHHHHHHHHHHHhcCCCc---
Confidence 99999974 7999999999999998 899999999853211 1 134566777788888777 6531
Q ss_pred CccccccccchhhcccCcccccCcccccCCC
Q psy15088 317 DGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 317 ~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
+...++ ++.||.+|.|..
T Consensus 223 ------~~~~~~-------i~vSA~~g~~i~ 240 (467)
T 1r5b_A 223 ------KTDVKY-------MPVSAYTGQNVK 240 (467)
T ss_dssp ------HHHEEE-------EECBTTTTBTTS
T ss_pred ------cCCceE-------Eecccccccccc
Confidence 001122 678998877654
No 47
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.24 E-value=1.9e-11 Score=149.16 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=99.3
Q ss_pred HhhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEE
Q psy15088 165 VQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVL 244 (1291)
Q Consensus 165 ~~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~ 244 (1291)
...|.+++..+.+..|+.+|+++++....+... +++|+|+|||||.+|...+..+++.+|++||
T Consensus 77 ~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~ll 140 (483)
T 3p26_A 77 KSSFKFAWIMDQTNEERERGVTVSICTSHFSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAIL 140 (483)
T ss_dssp ------------------CCSSCCCCEEEEECS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEE
T ss_pred CCcchhhhhhccchhHhhcCcceEeeeEEEecC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEE
Confidence 345778888888999999999999877766554 5689999999999999999999999999999
Q ss_pred EEECCCC-------CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcC
Q psy15088 245 FVDAAEG-------VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDRE 316 (1291)
Q Consensus 245 vVD~~~g-------~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 316 (1291)
|||+.+| +.+|+++++..++..+++ +|+|+||+|+... . ...++++.+++...+..+|+...
T Consensus 141 VvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~----~----~~~~~~i~~~~~~~l~~~g~~~~-- 210 (483)
T 3p26_A 141 CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW----S----QQRFEEIKSKLLPYLVDIGFFED-- 210 (483)
T ss_dssp EEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT----C----HHHHHHHHHHHHHHHHHHTCCGG--
T ss_pred EEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc----h----HHHHHHHHHHHHHHHHHcCCCcc--
Confidence 9999998 779999999999999865 8999999998631 1 23566777788888888876321
Q ss_pred CccccccccchhhcccCcccccCcccccCCC
Q psy15088 317 DGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 317 ~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.+|.|.+
T Consensus 211 --------~~~~-------i~iSA~~g~gi~ 226 (483)
T 3p26_A 211 --------NINW-------VPISGFSGEGVY 226 (483)
T ss_dssp --------GEEE-------EECCSSSCTTSS
T ss_pred --------cceE-------EEEeeecCCCcc
Confidence 1122 678999887764
No 48
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.22 E-value=1.3e-11 Score=148.64 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=99.8
Q ss_pred hccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEE
Q psy15088 168 FQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247 (1291)
Q Consensus 168 F~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD 247 (1291)
|.+++..+-+.+|+.+|+++++....+... +++++++|||||.+|...+..+++.+|++|||||
T Consensus 73 ~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvD 136 (434)
T 1zun_B 73 VDLALLVDGLQAEREQGITIDVAYRYFSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVD 136 (434)
T ss_dssp --CHHHHHHHHC-----CCCCCEEEEEECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEE
T ss_pred hhhhhhhccChhHHHCCcEEEeeeeEeecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEE
Confidence 444444555778999999998765544433 4589999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccc
Q psy15088 248 AAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQ 326 (1291)
Q Consensus 248 ~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1291)
+.+|+.+|+.+++..++..++| +|+|+||+|+... + ...+..+.+++..++..+++.. ...
T Consensus 137 a~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~----~----~~~~~~i~~~~~~~~~~~g~~~----------~~~ 198 (434)
T 1zun_B 137 ARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGF----D----ERVFESIKADYLKFAEGIAFKP----------TTM 198 (434)
T ss_dssp TTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTS----C----HHHHHHHHHHHHHHHHTTTCCC----------SEE
T ss_pred CCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcc----c----HHHHHHHHHHHHHHHHHhCCCc----------cCc
Confidence 9999999999999999999986 7889999998631 1 1234556677777777666210 111
Q ss_pred hhhcccCcccccCcccccCCC
Q psy15088 327 AVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 327 ~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
++ ++.||.+|.|.+
T Consensus 199 ~~-------i~vSA~~g~gi~ 212 (434)
T 1zun_B 199 AF-------VPMSALKGDNVV 212 (434)
T ss_dssp EE-------EECCTTTCTTTS
T ss_pred eE-------EEEeccCCCCcc
Confidence 22 678998877664
No 49
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.19 E-value=4.4e-12 Score=136.72 Aligned_cols=95 Identities=29% Similarity=0.615 Sum_probs=82.4
Q ss_pred CceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcc-------------------cCCCCCCCCCH
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRG-------------------AEGSGRADDNE 675 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg-------------------~~~~~r~dd~~ 675 (1291)
.+|++|||||+..||+.|...+.+. ..++.++++++|++++++|+.+|. ....+|.||++
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 3799999999999999988777653 456678999999999999999884 23457999999
Q ss_pred HHHHHHHhhccccccceEEeecchhhhhhhchhHH
Q psy15088 676 ESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710 (1291)
Q Consensus 676 e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~~ 710 (1291)
+.+++|+..|..++.||+.||..++++..++|.++
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~ 190 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKP 190 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 99999999999999999999999999888888654
No 50
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.17 E-value=3.6e-11 Score=143.12 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=92.2
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
...+..|+.+|+|+++....+... +++++++|||||.+|..++..+++.+|++|+|||+.+|..
T Consensus 41 ~d~~~~e~~~giTi~~~~~~~~~~----------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~ 104 (397)
T 1d2e_A 41 IDNAPEERARGITINAAHVEYSTA----------------ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM 104 (397)
T ss_dssp HHSCCEEEETTEEEECEEEEEECS----------------SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC
T ss_pred hhcCHHHHhcCcEEEeeeEEeccC----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC
Confidence 344668899999998755444322 5689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+|+++++..++..++| +++|+||+|+... . ..++.+.+++..++..+++
T Consensus 105 ~qt~e~l~~~~~~~vp~iivviNK~Dl~~~------~---~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 105 PQTREHLLLARQIGVEHVVVYVNKADAVQD------S---EMVELVELEIRELLTEFGY 154 (397)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGCSC------H---HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCeEEEEEECcccCCC------H---HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 6889999998631 1 2344556677778877775
No 51
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.16 E-value=1.2e-11 Score=149.66 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=105.4
Q ss_pred ccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEEC
Q psy15088 169 QWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDA 248 (1291)
Q Consensus 169 ~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~ 248 (1291)
.+|+...-+..|+.+|+++++....+... +++++|+|||||.+|..++..+++.+|++|||||+
T Consensus 55 ~~a~~~d~~~~er~~GiTi~~~~~~~~~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda 118 (458)
T 1f60_A 55 KYAWVLDKLKAERERGITIDIALWKFETP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAG 118 (458)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCSCEEEECS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEEC
T ss_pred hhhhhhccchhHHhcCcEEEEEEEEEecC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeC
Confidence 33443444557888999998766554433 56899999999999999999999999999999999
Q ss_pred CCCCch-------hHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccc
Q psy15088 249 AEGVML-------NTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDE 320 (1291)
Q Consensus 249 ~~g~~~-------~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 320 (1291)
.+|..+ |+++++..++..++| +|+|+||+|+.. .+ ..+++.+.+++..++..+++...
T Consensus 119 ~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~----~~----~~~~~~i~~~~~~~l~~~g~~~~------ 184 (458)
T 1f60_A 119 GVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK----WD----ESRFQEIVKETSNFIKKVGYNPK------ 184 (458)
T ss_dssp SHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT----TC----HHHHHHHHHHHHHHHHHHTCCGG------
T ss_pred CcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccccc----CC----HHHHHHHHHHHHHHHHHcCCCcc------
Confidence 999877 999999999999997 888999999862 11 13456677788888888876321
Q ss_pred cccccchhhcccCcccccCcccccCCC
Q psy15088 321 EMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 321 ~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.+|.|..
T Consensus 185 ----~~~~-------i~vSA~~g~nv~ 200 (458)
T 1f60_A 185 ----TVPF-------VPISGWNGDNMI 200 (458)
T ss_dssp ----GCCE-------EECCTTTCBTTT
T ss_pred ----CceE-------EEeecccCcCcc
Confidence 1122 678998877653
No 52
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.16 E-value=3.3e-12 Score=158.93 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=76.2
Q ss_pred hhhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEE
Q psy15088 166 QGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLF 245 (1291)
Q Consensus 166 ~GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~v 245 (1291)
.+|.+++..+.+.+|+.+|+|+++....+... ++.|+|+|||||.+|...+..+++.||++|||
T Consensus 222 ~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLV 285 (592)
T 3mca_A 222 GSFSYAWLLDTTEEERARGVTMDVASTTFESD----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLV 285 (592)
T ss_dssp -----------------------------------------------------CCEEESSSEEEEECCC-------CCSE
T ss_pred cchhhhhhhccchhhhcCCeeEEeeEEEEEeC----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEE
Confidence 45788888899999999999999877766554 56899999999999999999999999999999
Q ss_pred EECCCCC-------chhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHH-HHhcCCCCcC
Q psy15088 246 VDAAEGV-------MLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLL-RYLLIDDDRE 316 (1291)
Q Consensus 246 VD~~~g~-------~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~ 316 (1291)
||+.+|. .+||.+++..++..++| +|+|+||||+.. .+ ...+..+.+++...+ ..+|+...
T Consensus 286 VDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~----~~----~~~~~~i~~el~~~l~~~~g~~~~-- 355 (592)
T 3mca_A 286 VDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS----WS----EDRFQEIKNIVSDFLIKMVGFKTS-- 355 (592)
T ss_dssp EEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT----TC----HHHHHHHHHHHHHHHTTTSCCCGG--
T ss_pred EECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc----cc----HHHHHHHHHHHHHHHHHhhCCCcc--
Confidence 9999864 99999999999999998 888999999863 11 134566777777777 66665211
Q ss_pred CccccccccchhhcccCcccccCcccccCCC
Q psy15088 317 DGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 317 ~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.+|.|..
T Consensus 356 --------~~~i-------i~iSA~~G~gI~ 371 (592)
T 3mca_A 356 --------NVHF-------VPISAISGTNLI 371 (592)
T ss_dssp --------GEEE-------EEECSSSCSSSC
T ss_pred --------ceEE-------EEEecccCcccc
Confidence 1122 678999988764
No 53
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.16 E-value=2.4e-11 Score=146.28 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=88.5
Q ss_pred hccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEE
Q psy15088 168 FQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD 247 (1291)
Q Consensus 168 F~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD 247 (1291)
|.+++..+-+.+|+.+|+|+++....+... +++++++|||||.+|..++..+++.+|++|+|||
T Consensus 53 ~~~~~~~D~~~~E~~~giTi~~~~~~~~~~----------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvD 116 (435)
T 1jny_A 53 EKFAFLLDRLKEERERGVTINLTFMRFETK----------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVS 116 (435)
T ss_dssp HHHHHHHHHHHHC-----------CEEECS----------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEE
T ss_pred hhhhhhhccChHHHhcCceeEeeEEEEecC----------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEE
Confidence 444444555778999999998775544333 5689999999999999999999999999999999
Q ss_pred CCCC-------CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 248 AAEG-------VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 248 ~~~g-------~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+.+| +.+|+++++..++..++| +|+|+||+|+....+ + ..+++.+.+++...+..+++
T Consensus 117 a~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~--~----~~~~~~~~~~i~~~~~~~~~ 182 (435)
T 1jny_A 117 AKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY--D----EKRYKEIVDQVSKFMRSYGF 182 (435)
T ss_dssp CSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT--C----HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc--c----HHHHHHHHHHHHHHHHHcCC
Confidence 9999 899999999999999985 889999999864111 1 13456777888888888776
No 54
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.15 E-value=4.3e-11 Score=147.93 Aligned_cols=97 Identities=30% Similarity=0.405 Sum_probs=70.3
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
.+-+..|+.||+++....+.+ .|.....+ ++.++|+|||||.+|..++..+++.+|++|+|||+.+|++
T Consensus 43 ~D~~~~ErerGITI~~~~~~~--------~~~~~dg~---~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~ 111 (600)
T 2ywe_A 43 LDTLDVERERGITVKMQAVRM--------FYKAKDGN---TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE 111 (600)
T ss_dssp -------------CCCCSEEE--------EEECTTSC---EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC
T ss_pred cccchhhhcccceeeeeEEEE--------EEEcCCCC---eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc
Confidence 344667899999987543332 22211111 3589999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+||.++|.++...++|+|+|+||+|+..
T Consensus 112 ~qt~~~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 112 AQTVANFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCccc
Confidence 9999999999999999999999999874
No 55
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.15 E-value=5.7e-11 Score=144.56 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=88.3
Q ss_pred CCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch
Q psy15088 175 GPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML 254 (1291)
Q Consensus 175 GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~ 254 (1291)
+.+..|..+|+|+++....+... ++.++++|||||.+|..++..+++.+|++|||||+.+|+.+
T Consensus 49 d~~~~e~~~GiTi~~~~~~~~~~----------------~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~ 112 (482)
T 1wb1_A 49 DKLPESQKRGITIDIGFSAFKLE----------------NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 112 (482)
T ss_dssp ---------------CCCEEEET----------------TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCH
T ss_pred ccccccccCccEEecceEEEEEC----------------CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccH
Confidence 34567899999988665544332 56899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHh-cCCCCcCCccccccccchhhcccC
Q psy15088 255 NTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYL-LIDDDREDGDEEMGDSQAVVLHED 333 (1291)
Q Consensus 255 ~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 333 (1291)
|+.+++..++..++|+|+|+||+|+... ..++.+.+++...+... ++.. .++
T Consensus 113 qt~e~l~~~~~~~ip~IvviNK~Dl~~~----------~~~~~~~~~l~~~l~~~~~~~~------------~~i----- 165 (482)
T 1wb1_A 113 QTGEHMLILDHFNIPIIVVITKSDNAGT----------EEIKRTEMIMKSILQSTHNLKN------------SSI----- 165 (482)
T ss_dssp HHHHHHHHHHHTTCCBCEEEECTTSSCH----------HHHHHHHHHHHHHHHHSSSGGG------------CCE-----
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCcccc----------hhHHHHHHHHHHHHhhhccccc------------ceE-----
Confidence 9999999999999999999999998631 23445566666666655 4321 112
Q ss_pred cccccCcccccCC
Q psy15088 334 KRYYPTAVEVFGP 346 (1291)
Q Consensus 334 ~~~~~sa~~~~g~ 346 (1291)
++.||.+|.|.
T Consensus 166 --i~vSA~~g~gI 176 (482)
T 1wb1_A 166 --IPISAKTGFGV 176 (482)
T ss_dssp --EECCTTTCTTH
T ss_pred --EEEECcCCCCH
Confidence 67889887665
No 56
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.14 E-value=5.1e-11 Score=142.27 Aligned_cols=113 Identities=22% Similarity=0.275 Sum_probs=91.9
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
...+..|+.+|+++++....+... +++++++|||||.+|...+..+++.+|++|+|||+.+|..
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~----------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~ 113 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETA----------------KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECS----------------SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC
T ss_pred ccCCHHHHHcCCCEEeeeeEeccC----------------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc
Confidence 455667899999988755444332 5689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+|+++++..++..++| +++|+||+|+... . ..++.+.+++..++..+++
T Consensus 114 ~qt~~~l~~~~~~~ip~iivviNK~Dl~~~------~---~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 114 PQTREHILLARQVGVPYIVVFMNKVDMVDD------P---ELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGCCC------H---HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEECccccCc------H---HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 7899999998631 1 1334455667777777765
No 57
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.14 E-value=6.8e-11 Score=139.06 Aligned_cols=166 Identities=17% Similarity=0.076 Sum_probs=98.3
Q ss_pred EecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHH
Q psy15088 219 KCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHI 298 (1291)
Q Consensus 219 liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~ 298 (1291)
-++++ ..+|.+......+.+|++|+|||+.+-......++.+++ .++|+++|+||+|+...+. .. +.+
T Consensus 53 ~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~--~~-------~~~ 120 (369)
T 3ec1_A 53 DVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSV--KY-------PKL 120 (369)
T ss_dssp -------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTC--CH-------HHH
T ss_pred CCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCcc--CH-------HHH
Confidence 34554 566777666666889999999999986554444444443 2789999999999864211 11 112
Q ss_pred HHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccc
Q psy15088 299 IDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQ 378 (1291)
Q Consensus 299 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~ 378 (1291)
.+.+...+..+|+.. . ..+..||.++.|.+ .+.+
T Consensus 121 ~~~l~~~~~~~g~~~------------~-------~v~~iSA~~g~gi~-----------~L~~---------------- 154 (369)
T 3ec1_A 121 LRWMRRMAEELGLCP------------V-------DVCLVSAAKGIGMA-----------KVME---------------- 154 (369)
T ss_dssp HHHHHHHHHTTTCCC------------S-------EEEECBTTTTBTHH-----------HHHH----------------
T ss_pred HHHHHHHHHHcCCCc------------c-------cEEEEECCCCCCHH-----------HHHH----------------
Confidence 223333444444311 0 11567888877664 1111
Q ss_pred cCCCcccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhc-----CCcccCCccccccccccccccccccCcee
Q psy15088 379 DLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQT-----HPGYRQPAEEKNLRYTDTLFTEQERGVSI 453 (1291)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~-----~~i~~~~~~~~~~~~~D~~~~E~erGiTi 453 (1291)
.+.++. .-++|+++|.+|+|||||+|+|++.. ...++. -.|+|+
T Consensus 155 ----------~I~~~~----~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-----------------~~gtT~ 203 (369)
T 3ec1_A 155 ----------AINRYR----EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-----------------FPGTTL 203 (369)
T ss_dssp ----------HHHHHH----TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-----------------CTTSSC
T ss_pred ----------HHHhhc----ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-----------------CCCeEE
Confidence 111111 12589999999999999999999872 222222 227887
Q ss_pred eeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 454 KASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+.....+. ..+.++||||..
T Consensus 204 ~~~~~~~~--------~~~~liDtPG~~ 223 (369)
T 3ec1_A 204 DMIEIPLE--------SGATLYDTPGII 223 (369)
T ss_dssp EEEEEECS--------TTCEEEECCSCC
T ss_pred eeEEEEeC--------CCeEEEeCCCcC
Confidence 76544332 127999999973
No 58
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.12 E-value=1.6e-10 Score=143.30 Aligned_cols=97 Identities=31% Similarity=0.378 Sum_probs=68.5
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
..-+..|+.||+++....+.+. |....++ ++.++|+|||||.+|..++..+++.+|++|+|||+.+|+.
T Consensus 41 ~D~~~~ErerGiTi~~~~~~~~--------~~~~~g~---~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~ 109 (599)
T 3cb4_D 41 LDSMDLERERGITIKAQSVTLD--------YKASDGE---TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE 109 (599)
T ss_dssp ----------------CEEEEE--------EECTTSC---EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC
T ss_pred cccchhhhcccceeeeeEEEEE--------EecCCCC---eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC
Confidence 3446679999999985544432 2111111 3589999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 254 LNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+|+.++|..+...++|+|+|+||+|+..
T Consensus 110 ~qt~~~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 110 AQTLANCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp THHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHCCCCEEEeeeccCccc
Confidence 9999999999999999999999999974
No 59
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.10 E-value=1.7e-10 Score=135.64 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=72.4
Q ss_pred cccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHH
Q psy15088 182 IRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261 (1291)
Q Consensus 182 ~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~ 261 (1291)
.+|+|+++....+... +++++++|||||.+|..++..+++.+|++||||| .+|+.+|+++++.
T Consensus 43 ~~giTi~~~~~~~~~~----------------~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~ 105 (370)
T 2elf_A 43 KKGTSSDITMYNNDKE----------------GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECII 105 (370)
T ss_dssp EEEEESSSEEEEECSS----------------SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHH
T ss_pred hCCEEEEeeEEEEecC----------------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHH
Confidence 6788887665544333 5689999999999999999999999999999999 9999999999999
Q ss_pred HHHHcCCcE-EEEEE-ccCc
Q psy15088 262 HAVQEKMAI-TLCVN-KIDR 279 (1291)
Q Consensus 262 ~l~~~~~~~-ilvvN-KiD~ 279 (1291)
.++..++|. |+|+| |||+
T Consensus 106 ~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 106 ALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp HHHHTTCCEEEEEECCGGGS
T ss_pred HHHHcCCCeEEEEEEeccCC
Confidence 999999998 89999 9998
No 60
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.10 E-value=1e-11 Score=134.62 Aligned_cols=91 Identities=38% Similarity=0.616 Sum_probs=75.5
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
.+|++|||||+..|+..|...+. .++.+++++++++++.+|+++|.. ..+|.||+++.+++|+..|..++.||+.|
T Consensus 109 ~g~ilDGfPRt~~Qa~~l~~~~~---~~~~vi~l~v~~e~~~~Rl~~R~~-~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~ 184 (217)
T 3umf_A 109 CHFLIDGYPRELDQGIKFEKEVC---PCLCVINFDVSEEVMRKRLLKRAE-TSNRVDDNEETIVKRFRTFNELTKPVIEH 184 (217)
T ss_dssp SEEEEETBCSSHHHHHHHHHHTC---CCSEEEEEECCHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCcccccCCCcHHHHHHHHHhCC---ccCEEEeccCCHHHHHHHHhcccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999988765443 345688999999999999999864 57899999999999999999999999999
Q ss_pred ecchhhhhhhchhHH
Q psy15088 696 FEAKNLVKRFNAEKS 710 (1291)
Q Consensus 696 sa~k~~~~~~~g~~~ 710 (1291)
|..++++..++|.+.
T Consensus 185 Y~~~~~l~~Idg~~~ 199 (217)
T 3umf_A 185 YKQQNKVITIDASGT 199 (217)
T ss_dssp HHTTTCEEEEETTSC
T ss_pred HHhcCCEEEEECCCC
Confidence 999999888888654
No 61
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.09 E-value=4.2e-11 Score=149.46 Aligned_cols=140 Identities=17% Similarity=0.166 Sum_probs=111.2
Q ss_pred hhccccccCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEE
Q psy15088 167 GFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFV 246 (1291)
Q Consensus 167 GF~~a~~~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vV 246 (1291)
.|.+++..+-+..|+.+|+|+++....+... +++|+|+|||||.+|...+..+++.||++|+||
T Consensus 213 ~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVV 276 (611)
T 3izq_1 213 SFKFAWIMDQTNEERERGVTVSICTSHFSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCV 276 (611)
T ss_dssp CCSSSHHHHHHHHHHHTTTCCSCSCCEEECS----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEE
T ss_pred ccceeeeeccchhhhhCCeeEeeeeEEEecC----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEE
Confidence 4566666667778999999998776666554 568999999999999999999999999999999
Q ss_pred ECCCC-------CchhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCc
Q psy15088 247 DAAEG-------VMLNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDG 318 (1291)
Q Consensus 247 D~~~g-------~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 318 (1291)
|+..| +.+|+.+++..++..++| +|+|+||+|+... -..++.++.+++..++..+|+...
T Consensus 277 Da~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~--------~~~~~~ei~~~l~~~l~~~g~~~~---- 344 (611)
T 3izq_1 277 DCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW--------SQQRFEEIKSKLLPYLVDIGFFED---- 344 (611)
T ss_dssp ECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT--------CHHHHHHHHHHHHHHHHHHTCCGG----
T ss_pred ECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch--------hHHHHHHHHHHHHHHHHhhccccc----
Confidence 99998 678999999999999977 8888999998631 113566777788888888876321
Q ss_pred cccccccchhhcccCcccccCcccccCCC
Q psy15088 319 DEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 319 ~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
..++ ++.||.+|.|..
T Consensus 345 ------~~~~-------i~vSA~tG~gI~ 360 (611)
T 3izq_1 345 ------NINW-------VPISGFSGEGVY 360 (611)
T ss_dssp ------GCEE-------EECCTTTCTTTS
T ss_pred ------CccE-------EeeecccCCCcc
Confidence 1122 678999888764
No 62
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.07 E-value=1.2e-10 Score=130.38 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=41.3
Q ss_pred CCcccc-HHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 223 PGHVNF-SDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 223 pG~~~~-~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
|||... ..++...+..+|++|.|+||+.+.......+- ++ ++|+++|+||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 888654 46899999999999999999998776544332 33 999999999999864
No 63
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.06 E-value=2e-10 Score=147.94 Aligned_cols=113 Identities=21% Similarity=0.257 Sum_probs=81.8
Q ss_pred cCCCCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc
Q psy15088 174 EGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM 253 (1291)
Q Consensus 174 ~GpL~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~ 253 (1291)
...+..|+.+|+|+++....+... +++++++|||||.+|..++..+++.+|++|||||+.+|+.
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~----------------~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~ 397 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTP----------------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM 397 (1289)
T ss_dssp --------------CCSCEEEECS----------------SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC
T ss_pred cccccccccCceeEEEEEEEEcCC----------------CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence 455678999999998754444322 5689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 254 LNTERLLKHAVQEKMA-ITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+||++++..++..++| +|+|+||+|+... . ..++.+.+++..++..+|+
T Consensus 398 ~QTrEhL~ll~~lgIP~IIVVINKiDLv~d------~---e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 398 PQTREHILLGRQVGVPYIIVFLNKCDMVDD------E---ELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp TTHHHHHHHHHHHTCSCEEEEEECCTTCCC------H---HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeecccccc------h---hhHHHHHHHHHHHHHhccc
Confidence 9999999999999999 7889999998631 1 2344566777778887775
No 64
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.02 E-value=2.6e-11 Score=131.82 Aligned_cols=92 Identities=32% Similarity=0.526 Sum_probs=74.5
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
++|++|||||+..|++.|... ...++.+++|++|++++++|+.+|+. .+.+
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~---~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~ 163 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEA---GVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQ 163 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHT---TCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred CCeEecCCCCcHHHHHHHHHh---CCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCcccc
Confidence 389999999999888776421 12356789999999999999999863 1236
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecch-----------hhhhhhchhHH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAK-----------NLVKRFNAEKS 710 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k-----------~~~~~~~g~~~ 710 (1291)
|.||+++.+++||..|..++.||+.||..+ +++..++|.++
T Consensus 164 R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~ 215 (230)
T 3gmt_A 164 RDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGA 215 (230)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCC
Confidence 999999999999999999999999999874 67888998876
No 65
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=3.4e-10 Score=132.95 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=91.1
Q ss_pred cccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH--cCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHH
Q psy15088 226 VNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ--EKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEIN 303 (1291)
Q Consensus 226 ~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~--~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~ 303 (1291)
.+|.+.+....+.+|++|+|+|+.+-. ......+++ .++|+++|+||+|+...+. .. . ++.+.+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~--~~----~---~~~~~l~ 123 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSV--KH----D---KVKHWMR 123 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTS--CH----H---HHHHHHH
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCccc--CH----H---HHHHHHH
Confidence 567666666677888999999998632 222222222 3789999999999864211 11 1 1222333
Q ss_pred HHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCCccccccccccccccccccccccccccccccccCCCc
Q psy15088 304 GLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDT 383 (1291)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~~e~~~~~~d~~~~~~~~i~~~~~~~~~~~~~~~~~~ 383 (1291)
......|+... ..+..||.++.|.+ .+.+
T Consensus 124 ~~~~~~g~~~~-------------------~v~~iSA~~g~gi~-----------~L~~--------------------- 152 (368)
T 3h2y_A 124 YSAKQLGLKPE-------------------DVFLISAAKGQGIA-----------ELAD--------------------- 152 (368)
T ss_dssp HHHHHTTCCCS-------------------EEEECCTTTCTTHH-----------HHHH---------------------
T ss_pred HHHHHcCCCcc-------------------cEEEEeCCCCcCHH-----------HHHh---------------------
Confidence 34444553110 11567888877664 1111
Q ss_pred ccchHHHhhhcCCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccc
Q psy15088 384 VYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLP 463 (1291)
Q Consensus 384 ~~~~~~~~~~~~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 463 (1291)
.+.++. .-++|+++|.+|+|||||+|+|++......... ...-...|+|++...+.+..
T Consensus 153 -----~l~~~~----~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-----------~~~~~~~gtT~~~~~~~~~~- 211 (368)
T 3h2y_A 153 -----AIEYYR----GGKDVYVVGCTNVGKSTFINRMIKEFSDETENV-----------ITTSHFPGTTLDLIDIPLDE- 211 (368)
T ss_dssp -----HHHHHH----TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC-----------CEEECCC----CEEEEESSS-
T ss_pred -----hhhhhc----ccceEEEecCCCCChhHHHHHHHhhhccccccc-----------eecCCCCCeecceEEEEecC-
Confidence 011110 124899999999999999999998742110000 00111237787665443321
Q ss_pred ccCCCCeEEEEEeCCCcc
Q psy15088 464 DVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 464 ~~~~~~~~~~liDTpGh~ 481 (1291)
.+.++||||..
T Consensus 212 -------~~~liDtPG~~ 222 (368)
T 3h2y_A 212 -------ESSLYDTPGII 222 (368)
T ss_dssp -------SCEEEECCCBC
T ss_pred -------CeEEEeCCCcC
Confidence 28899999974
No 66
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.98 E-value=4.5e-10 Score=137.71 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=75.2
Q ss_pred CcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH
Q psy15088 179 EEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER 258 (1291)
Q Consensus 179 ~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~ 258 (1291)
.|+.+|+++......+... +++++|+|||||.+|..++..+++.+|++|+|||+..|+..++..
T Consensus 62 ~e~~~GiTi~~~~~~~~~~----------------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~ 125 (528)
T 3tr5_A 62 LEKQRGISVTTSVMQFPYK----------------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK 125 (528)
T ss_dssp HHHHHCCSSSSSEEEEEET----------------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred hhhcCCeeEEEeEEEEEeC----------------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 4667888776433332221 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEEccCccc
Q psy15088 259 LLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 259 ~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++++++..++|+++|+||+|+..
T Consensus 126 ~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 126 LMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp HHHHHHTTTCCEEEEEECTTSCC
T ss_pred HHHHHHHcCCCEEEEEeCCCCcc
Confidence 99999999999999999999964
No 67
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.97 E-value=7.4e-10 Score=132.41 Aligned_cols=67 Identities=25% Similarity=0.254 Sum_probs=62.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC-chhHHHHHHHHHHcCC-cEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV-MLNTERLLKHAVQEKM-AITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~-~~~~~~~~~~l~~~~~-~~ilvvNKiD~~~ 281 (1291)
++++++|||||.+|..++..++..+|++|||||+.+|+ .+||.+++..++..++ |+|+|+||+|+..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 58999999999999999999999999999999999998 9999999999988886 5888899999864
No 68
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.97 E-value=7.2e-10 Score=126.72 Aligned_cols=109 Identities=14% Similarity=0.032 Sum_probs=80.2
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
-+.++|+|+|++|+|||||+|+|++....+++..+ ++|++.....+.+ ++..++|+||
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~-----------------~tTr~~i~~i~~~-----~~~~l~l~DT 62 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP-----------------QTTRKRLRGILTE-----GRRQIVFVDT 62 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-----------------CCCCSCEEEEEEE-----TTEEEEEEEC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCC-----------------CceeEEEEEEEEe-----CCcEEEEecC
Confidence 45679999999999999999999987655544333 5555433333334 6889999999
Q ss_pred CCcccc--------c--ccccccccceEEEEecCCCccchhhHhhHHHHHhh--cCccchhhhhh
Q psy15088 478 PASPVT--------L--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHA--SAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~--------~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~--~~~~~fv~fil 530 (1291)
||+... . ....+..+|++++|+|+..+++.++..++...... +.|.++ ++|
T Consensus 63 pG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~il--V~N 125 (301)
T 1wf3_A 63 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL--VGN 125 (301)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEE--EEE
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEE--EEE
Confidence 998531 1 23445678999999999988888888777777665 677765 666
No 69
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.97 E-value=4.7e-10 Score=139.17 Aligned_cols=125 Identities=21% Similarity=0.164 Sum_probs=91.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcccccc-----------
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLEL----------- 284 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~----------- 284 (1291)
.++|+|||||.+|...+..+++.+|++|||||+.+|+++||.+++++++..++|+|+|+||+|+.....
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHH
Confidence 589999999999998888899999999999999999999999999999999999999999999863110
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhcCCCCcCCccccccccchhhcccCcccccCcccccCCC
Q psy15088 285 KLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPD 347 (1291)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~sa~~~~g~~ 347 (1291)
......+...+.+.+.++...+...|+...........+...++ ++.||.+|.|.+
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpv-------v~vSA~tG~GI~ 206 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSI-------IPISAITGEGIP 206 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEE-------EECCTTTCTTHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceE-------EEEeccCCCCch
Confidence 01123444556666666666666666633211100111222233 688999988764
No 70
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.96 E-value=6.3e-10 Score=136.52 Aligned_cols=89 Identities=24% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCCcccccceeEEecccccCCCccccccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH
Q psy15088 177 LCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT 256 (1291)
Q Consensus 177 L~~E~~~Gv~~~l~D~~lht~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~ 256 (1291)
+..|+.+|+++......+... +++++|+|||||.+|..++..+++.+|++|+|||+..|+.+++
T Consensus 60 ~~~E~~rGiTi~~~~~~~~~~----------------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t 123 (529)
T 2h5e_A 60 MEMEKQRGISITTSVMQFPYH----------------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT 123 (529)
T ss_dssp ----------CCTTEEEEEET----------------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH
T ss_pred chhcccCCcceeeeEEEEEEC----------------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH
Confidence 446888898876433322221 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 257 ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 257 ~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++++++++..++|+++|+||+|+..
T Consensus 124 ~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 124 RKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp HHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred HHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 9999999999999999999999874
No 71
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.96 E-value=1.3e-09 Score=125.25 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=81.7
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCC-CeEEEEE
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK-NYLMNIF 475 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~-~~~~~li 475 (1291)
|.....|||+|++|+|||||+|+|++....+++..+ |+|+......+.+ + ++.++|+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~-----------------~tT~~~~~~~~~~-----~~~~~i~lv 64 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKA-----------------GTTRMRVLGVKNI-----PNEAQIIFL 64 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-----------------CCCCSCEEEEEEE-----TTTEEEEEE
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCC-----------------CceeeEEEEEEec-----CCCCeEEEE
Confidence 344578999999999999999999987655444433 7777665555555 5 8999999
Q ss_pred eCCCcccc------------cccccccccceEEEEecCCCccchhhHhh-HHHHHhhcCccchhhhhh
Q psy15088 476 DTPASPVT------------LLLPDVKGKNYLMNIFDTPGMWDIHVRKF-SKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 476 DTpGh~~~------------~~l~~~~~ad~~v~vida~~g~~~qt~~~-~~~~~~~~~~~~fv~fil 530 (1291)
||||+... .....+..+|++++|+|+..+.+.++..+ +..+...++|.++ ++|
T Consensus 65 DTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvil--V~N 130 (308)
T 3iev_A 65 DTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIV--VIN 130 (308)
T ss_dssp ECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEE--EEE
T ss_pred ECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEE--EEE
Confidence 99998432 12344557899999999999988888877 5666666677664 555
No 72
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.92 E-value=1.3e-09 Score=124.62 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=78.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+.++|+|+||+|+|||||+|+|++....+++..+ |+|++.....+.+ ++..++++|||
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~-----------------~tTr~~~~gi~~~-----~~~~i~~iDTp 64 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA-----------------QTTRHRIVGIHTE-----GAYQAIYVDTP 64 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS-----------------SCCSSCEEEEEEE-----TTEEEEEESSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC-----------------CcceeeEEEEEEE-----CCeeEEEEECc
Confidence 3468999999999999999999987543332222 4444332222344 67899999999
Q ss_pred Ccc---------cc--cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASP---------VT--LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~---------~~--~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|+. .+ .....+..+|++++|+|+.. ++++++.+++.....+.|.++ ++|
T Consensus 65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~il--vlN 124 (301)
T 1ega_A 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVIL--AVN 124 (301)
T ss_dssp SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEE--EEE
T ss_pred CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEE--EEE
Confidence 996 11 24566778899999999988 999998888877766788876 556
No 73
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=98.90 E-value=1.2e-09 Score=123.59 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=58.4
Q ss_pred ChHHHhHHhhhCCceEEEE-cccccEEEEecchhhHHHHHHHHHhhhcCcceeecCCeeeeeee
Q psy15088 1 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCET 63 (1291)
Q Consensus 1 l~~gL~~l~~~Dp~~~~~~-~etGE~ii~~~GElHLe~~l~dL~~~~~~i~i~~s~P~V~frET 63 (1291)
|.++|.+|..+||++.+.. ++|||.+|+|+||||||+++++||++ |+++.+|.|.|+||||
T Consensus 58 L~~aL~kl~~eDpsL~v~~~~~t~~~~v~G~GELHLeIl~ErLrrE--g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 58 ILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIENMRRE--GFELAVSRPEVIIXEE 119 (332)
T ss_dssp HHHHHHHHHHHCTTCEEEECSSTTEEEEEESSHHHHHHHHHHHHHH--TBCEEECCCEECCEEE
T ss_pred HHHHHHHHhccCCEEEEEEcCCCCeEEEEeeCHHHHHHHHHHHHhc--CceEEEeCCEEEEEEE
Confidence 4689999999999999999 67999999999999999999999998 9999999999999998
No 74
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.89 E-value=4.1e-09 Score=125.63 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=63.4
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC-chhHHHHHHHHHHcCC-cEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV-MLNTERLLKHAVQEKM-AITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~-~~~~~~~~~~l~~~~~-~~ilvvNKiD~~~ 281 (1291)
.++++++|||||.+|..++..+++.+|++|+|||+.+|. .+|+.+++..++..+. |+++|+||+|+..
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 368999999999999999999999999999999999998 9999999999998886 7899999999864
No 75
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.83 E-value=5.7e-09 Score=116.57 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=74.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+|+|++|+|||||+++|++....+.... .+++|+......+.| +++.++|+|||
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~-----~~~~i~iiDTp 79 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLG----------------SQTLTKTCSKSQGSW-----GNREIVIIDTP 79 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT----------------SCCCCCSCEEEEEEE-----TTEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCC----------------CCceeeeeEEEEEEe-----CCCEEEEEECc
Confidence 346999999999999999999997754332211 123666666566667 68999999999
Q ss_pred Ccccccc-------------cccccccceEEEEecCCCccchhhHhhHHHHHhh-----cCccch
Q psy15088 479 ASPVTLL-------------LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHA-----SAQRSF 525 (1291)
Q Consensus 479 Gh~~~~~-------------l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~-----~~~~~f 525 (1291)
||..+.. ......+|++|+|+|+.. ++.++..++...... +.|+++
T Consensus 80 G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~ 143 (260)
T 2xtp_A 80 DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIV 143 (260)
T ss_dssp GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEE
Confidence 9954321 113456799999999985 888887777766554 455554
No 76
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.82 E-value=1.6e-09 Score=129.30 Aligned_cols=104 Identities=23% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCCCcccccceeEEecccccCCC--c--cc-----cccCCCceeeecCceeEEecCCCccccHHHHHHHhhhcCcEEEEE
Q psy15088 176 PLCEEPIRNVKFKIREGNLNSSP--S--IY-----CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFV 246 (1291)
Q Consensus 176 pL~~E~~~Gv~~~l~D~~lht~a--s--~~-----~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vV 246 (1291)
-+.+|..+|+|+.+....+.... . .+ +...+..+.. .++++++|||||.+|..++..++..+|++||||
T Consensus 35 ~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 112 (408)
T 1s0u_A 35 RHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEF--LRRVSFVDSPGHETLMATMLSGASLMDGAILVI 112 (408)
T ss_dssp C-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEE--EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEE
T ss_pred cCcccccCCcEEEecccccccccccccccccccccccccCccccc--ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEE
Confidence 45678889999876533211100 0 00 0111111111 358999999999999999999999999999999
Q ss_pred ECCCCC-chhHHHHHHHHHHcCC-cEEEEEEccCccc
Q psy15088 247 DAAEGV-MLNTERLLKHAVQEKM-AITLCVNKIDRLM 281 (1291)
Q Consensus 247 D~~~g~-~~~~~~~~~~l~~~~~-~~ilvvNKiD~~~ 281 (1291)
|+.+|. .+||.+++..++..++ |+++|+||+|+..
T Consensus 113 da~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 113 AANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp ETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred ECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 999998 9999999999888886 6889999999874
No 77
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.82 E-value=1.5e-08 Score=114.16 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=73.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||+|+|++.. ..+.. ..|+|++.....+.+ .+..+.|+||||+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~-~~v~~-----------------~~g~t~~~~~~~~~~-----~~~~~~liDtpG~ 60 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGN-----------------WAGVTVERKEGQFST-----TDHQVTLVDLPGT 60 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC-EEEEE-----------------CTTSSSEEEEEEEEC-----SSCEEEEEECCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-cccCC-----------------CCCeeEEEEEEEEEe-----CCCceEEEECcCC
Confidence 389999999999999999998764 22221 228888877777776 6788999999999
Q ss_pred ccccccc--------------cccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVTLLLP--------------DVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~~~l~--------------~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
..+..+. ....+|++++|+|+... .....+..+..+.++|.++ ++|
T Consensus 61 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~iv--v~N 120 (274)
T 3i8s_A 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIV--ALN 120 (274)
T ss_dssp SCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEE--EEE
T ss_pred CccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEE--EEE
Confidence 6543211 12578999999998762 3445555666677888765 555
No 78
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.80 E-value=1.1e-09 Score=130.48 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=77.8
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
...+||+|+|+.|+|||||+++|++...... +..+|+|++.....+.+. ....++|+||
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-----------------~~~~gtT~d~~~~~~~~~----~~~~l~liDT 90 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-----------------SDYAGTTTDPVYKSMELH----PIGPVTLVDT 90 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEET----TTEEEEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-----------------CCCCCeeeeeEEEEEEEC----CCCeEEEEEC
Confidence 4568999999999999999999987643222 334589998887777773 2348999999
Q ss_pred CCccccccc---------ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 478 PASPVTLLL---------PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~~~l---------~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|||.++..+ .....+|++|+|+|+ +...++..+...+.+.++|.++ ++|
T Consensus 91 pG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIv--V~N 148 (423)
T 3qq5_A 91 PGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVV--VVN 148 (423)
T ss_dssp SSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEE--ECC
T ss_pred cCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEE--EEe
Confidence 999765432 345578999999999 7788899999998888888765 566
No 79
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.78 E-value=1.9e-09 Score=130.50 Aligned_cols=68 Identities=31% Similarity=0.387 Sum_probs=64.4
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++|+|||||.+|...+..+++.+|++|||||+.+|+.+||.+++..++..++|+|+++||+|+..
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999864
No 80
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.75 E-value=2.1e-09 Score=131.31 Aligned_cols=68 Identities=31% Similarity=0.410 Sum_probs=64.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++++|||||.+|...+..+++.+|++|||||+.+|+++|+.+++..++..++|+|+|+||+|+..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999874
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.72 E-value=1.1e-08 Score=123.43 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=75.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+|+|++|+|||||+|+|++....++...+ |+|++.....+.| .++.+.++||||.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~-----------------g~T~d~~~~~~~~-----~~~~~~l~DT~G~ 59 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE-----------------GVTRDPVQDTVEW-----YGKTFKLVDTCGV 59 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEE-----TTEEEEEEECTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCC-----------------CCccceeeEEEEE-----CCeEEEEEECCCc
Confidence 47999999999999999999977554444433 9999988888888 7889999999997
Q ss_pred ccc---------c--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVT---------L--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~---------~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
... + +...+..||++++|+|+..+++..+..+.......++|.++ ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~il--v~N 118 (439)
T 1mky_A 60 FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTIL--VAN 118 (439)
T ss_dssp TSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEE--EEE
T ss_pred cccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEe
Confidence 421 1 33456789999999999999888887777766667777765 455
No 82
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.70 E-value=2.5e-08 Score=113.55 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=37.9
Q ss_pred HhhhcCcEEEEEECCCCCchhHHHHHHHH---HHcCCcEEEEEEccCccc
Q psy15088 235 AMRLCDGVVLFVDAAEGVMLNTERLLKHA---VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 235 a~~~~D~~l~vVD~~~g~~~~~~~~~~~l---~~~~~~~ilvvNKiD~~~ 281 (1291)
++..+|.+++|+|++.+....+ .+-+++ +..++|+++|+||+|+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 6999999999999998766655 555555 457999999999999874
No 83
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.69 E-value=3.4e-08 Score=110.13 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=93.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+++|++|+|||||+|+|.+.. ..+.. ..|+|++.....+.+ +++.+.|+||||+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~-----------------~pg~Tv~~~~~~~~~-----~~~~~~lvDtpG~ 58 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGN-----------------WPGVTVEKKTGEFLL-----GEHLIEITDLPGV 58 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEE-----------------CTTSSSEEEEEEEEE-----TTEEEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccC-----------------CCCceEEEEEEEEEE-----CCeEEEEEeCCCc
Confidence 589999999999999999998663 11111 128888877777777 6789999999999
Q ss_pred cccccc--------------ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhC-Ccc
Q psy15088 481 PVTLLL--------------PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVG-DVD 545 (1291)
Q Consensus 481 ~~~~~l--------------~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~-~~~ 545 (1291)
..+... -....+|++|+|+|+.. ......+..+..+.++|.++ ++| | +|.... ...
T Consensus 59 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvil--v~N----K-~Dl~~~~~~~ 129 (256)
T 3iby_A 59 YSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVV--ALN----M-MDIAEHRGIS 129 (256)
T ss_dssp SSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEE--EEE----C-HHHHHHTTCE
T ss_pred ccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEE--EEE----C-hhcCCcCCcH
Confidence 543321 11156899999999887 23445566666677888765 555 4 554432 233
Q ss_pred CcHHHHHHHhCCCcChhhh--hcCchHHHHHHHh
Q psy15088 546 SSLPAVLDQLGIHMNKEES--KINIRPLLRLVYK 577 (1291)
Q Consensus 546 ~~l~~i~~~lg~~l~~~~~--~~~~~~~l~~i~~ 577 (1291)
..+..+...+|+.+-+... ..+...++..+.+
T Consensus 130 ~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 130 IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3466677777765322111 1345555554443
No 84
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.68 E-value=5.7e-08 Score=100.99 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=76.9
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
.+..+|+++|.+++|||||+++|+...-.. ....++|.+.....+.+ ++..+.++||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt 62 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE------------------QEAGGITQHIGAYQVTV-----NDKKITFLDT 62 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC------------------SSCCSSSTTCCCCEEEE-----TTEEEEESCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc------------------CCCCceeEeeeEEEEEe-----CCceEEEEEC
Confidence 345699999999999999999998653110 01124555544444555 6788999999
Q ss_pred CCcccccc--cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 478 PASPVTLL--LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~~~--l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||+..+.. ...+..+|++++|+|+..+...++...+......++|.++ ++|
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~il--v~n 115 (178)
T 2lkc_A 63 PGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIV--AIN 115 (178)
T ss_dssp CSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEE--EEE
T ss_pred CCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEE--EEE
Confidence 99975542 3445678999999999888777787777776666777654 455
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.67 E-value=2.9e-08 Score=111.70 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=86.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
+++|+++|++|+|||||+++|.+... ... ...|+|++.....+.+ +++.++++||||
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~-----------------~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG 59 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVG-----------------NWPGVTVEKKEGIMEY-----REKEFLVVDLPG 59 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEE-----------------ECTTSSCEEEEEEEEE-----TTEEEEEEECCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccC-----------------CCCCeEEEeeEEEEEE-----CCceEEEEeCCC
Confidence 46999999999999999999986532 111 2237888877777777 678899999999
Q ss_pred cccccc----------cccccccceEEEEecCCCccchhhHhhHHHHHhhc-CccchhhhhhhHHHHHHHHhh-CCccCc
Q psy15088 480 SPVTLL----------LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHAS-AQRSFVEFVLEPVYKLVAQVV-GDVDSS 547 (1291)
Q Consensus 480 h~~~~~----------l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~-~~~~fv~fil~~i~k~~d~~~-~~~~~~ 547 (1291)
+..+.. .-....+|++++|+|+... .+...++....+.+ +|.++ ++| | +|... ......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~il--v~N----K-~Dl~~~~~~~~~ 130 (271)
T 3k53_A 60 IYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIIL--VLN----K-FDLLKKKGAKID 130 (271)
T ss_dssp CSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEE--EEE----C-HHHHHHHTCCCC
T ss_pred ccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEE--EEE----C-hhcCcccccHHH
Confidence 854332 1112467999999998875 34556666666677 77664 555 4 45321 122223
Q ss_pred HHHHHHHhCCCc
Q psy15088 548 LPAVLDQLGIHM 559 (1291)
Q Consensus 548 l~~i~~~lg~~l 559 (1291)
...+...+|+.+
T Consensus 131 ~~~l~~~lg~~~ 142 (271)
T 3k53_A 131 IKKMRKELGVPV 142 (271)
T ss_dssp HHHHHHHHSSCE
T ss_pred HHHHHHHcCCcE
Confidence 666777777643
No 86
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.67 E-value=2.1e-08 Score=108.75 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=76.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcC-CcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTH-PGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~-~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
...+|+++|+.++|||||+++|++... ..+... .|+|.+.....+.+ .++..++|+||
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~-----------------~~~t~~~~~~~~~~----~~~~~~~l~Dt 86 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKT-----------------PGRTQHINYFSVGP----AAEPVAHLVDL 86 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCC-----------------CCSCCCEEEEEESC----TTSCSEEEEEC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCC-----------------CCcccceEEEEecC----CCCCcEEEEcC
Confidence 456999999999999999999987752 222221 25666554444431 25788999999
Q ss_pred CCcccc---------------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 478 PASPVT---------------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~---------------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||+... ..+...+.+|++++|+|+..+++..+..+.......++|.++ ++|
T Consensus 87 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~--v~n 152 (223)
T 4dhe_A 87 PGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHS--LLT 152 (223)
T ss_dssp CCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEE--EEE
T ss_pred CCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEE--EEe
Confidence 997321 123334457889999999998888888888887777777765 455
No 87
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.63 E-value=1.1e-08 Score=123.10 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=72.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+|+|++|+|||||+|+|++....++...+ |+|++.....+.| .+..+.++||||+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~-----------------g~T~d~~~~~~~~-----~~~~~~l~DT~G~ 61 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTP-----------------GVTRDRIYSSAEW-----LNYDFNLIDTGGI 61 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC----------------------------CEEEECTT-----CSSCCEEEC----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCC-----------------CCccceEEEEEEE-----CCceEEEEECCCC
Confidence 48999999999999999999877544443333 8999888777777 6788999999998
Q ss_pred c--------ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 P--------VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~--------~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
. .++ ....+..||++++|+|+..+.+..+..+.......++|.++ ++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvil--v~N 119 (436)
T 2hjg_A 62 DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVL--AVN 119 (436)
T ss_dssp -----CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEE--EEE
T ss_pred CCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 4 121 34456788999999999999988888887777667777664 455
No 88
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.63 E-value=3.5e-08 Score=109.47 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=70.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||+|+|++....+.... ..|+|.......+.+ ++..++++||||.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~----------------~~~~T~~~~~~~~~~-----~~~~i~liDTPG~ 80 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLG----------------ATSVTRACTTGSRRW-----DKCHVEVVDTPDI 80 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC-------------------------CCSCEEEEEEE-----TTEEEEEEECCSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCC----------------CCCccccEEEEEEEE-----CCcEEEEEECCCC
Confidence 4999999999999999999998764332111 125666665566666 7899999999997
Q ss_pred cc--------c-c-cc----ccccccceEEEEecCCCccchhhHhhHHHHHhh------cCccchhhhhh
Q psy15088 481 PV--------T-L-LL----PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHA------SAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~--------~-~-~l----~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~------~~~~~fv~fil 530 (1291)
.. + . .. .....+|++|+|+|+.. ++..+..++....+. +.|.++ |+|
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil--v~n 147 (247)
T 3lxw_A 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV--FTR 147 (247)
T ss_dssp SSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE--EEC
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE--EEc
Confidence 21 1 1 11 11257799999999874 777777766665543 445443 666
No 89
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.60 E-value=5.6e-08 Score=99.15 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=68.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
++|+++|..++|||||+++|.+........ ..++|.+.....+.+ .+..+.++||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~ 59 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-----------------VPGVTRDLKEGVVET-----DRGRFLLVDTGGL 59 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEE-----TTEEEEEEECGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-----------------CCCceecceEEEEEe-----CCceEEEEECCCC
Confidence 589999999999999999998764222111 125555555444555 5778999999999
Q ss_pred ccc-------c--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 481 PVT-------L--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 481 ~~~-------~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
... . .......+|++++++|+..+++.....+.......+.|.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~il 113 (161)
T 2dyk_A 60 WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVIL 113 (161)
T ss_dssp CSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEE
T ss_pred CCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEE
Confidence 642 1 12234578999999999988777666666666656666554
No 90
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.59 E-value=1.8e-08 Score=122.17 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=76.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
.++|+|+|++|+|||||+|+|++....++... .|+|++.....+.| .+..++++||||
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~-----------------~g~t~~~~~~~~~~-----~~~~~~liDT~G 80 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDT-----------------PGVTRDRIYSSAEW-----LNYDFNLIDTGG 80 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC----------------------------CEEEECTT-----CSSCCEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-----------------CCcceeEEEEEEEE-----CCceEEEEECCC
Confidence 35899999999999999999987654433222 38999888777777 688999999999
Q ss_pred cc--------ccc--ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SP--------VTL--LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~--------~~~--~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.. .++ ....+..||++|+|+|+..+++..+..++......++|.++ ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvil--V~N 139 (456)
T 4dcu_A 81 IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVL--AVN 139 (456)
T ss_dssp ------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEE--EEE
T ss_pred CCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEE--EEE
Confidence 53 122 33455678999999999999999999888888777888765 455
No 91
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.55 E-value=1.7e-07 Score=107.04 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=36.3
Q ss_pred HhhhcCcEEEEEECCCCC-chhH-HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 235 AMRLCDGVVLFVDAAEGV-MLNT-ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 235 a~~~~D~~l~vVD~~~g~-~~~~-~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.++.+|++|+|+|+.+.. .... ...+..++..++|+++|+||+|+..
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 689999999999998753 3331 2344456778999999999999863
No 92
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=5.7e-08 Score=111.03 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=44.9
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC-chh-HHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV-MLN-TERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~-~~~-~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+.|| +..|..-....++.+|++|+|+|+.... ... -...+..++..++|++||+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 4556677 6555544456789999999999998753 222 12233445667899999999999863
No 93
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.53 E-value=7.6e-08 Score=116.04 Aligned_cols=103 Identities=13% Similarity=0.204 Sum_probs=74.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|++|+|||||+|+|++....++...+ |+|++.....+.+ +++.++|+||||+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-----------------gtT~d~~~~~i~~-----~g~~v~liDT~G~~ 283 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP-----------------GTTRDVVESQLVV-----GGIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSCCSCCT-----------------TCCHHHHHHEEEE-----TTEEEEECC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCC-----------------CeeEEEEEEEEEE-----CCEEEEEEECCccc
Confidence 7999999999999999999998766555444 8888877666766 78999999999984
Q ss_pred c----------ccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 V----------TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~----------~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
. .++...+..+|++++|+|+..+++.++..++..... +|.++ ++|
T Consensus 284 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piiv--V~N 338 (462)
T 3geh_A 284 ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLIL--VMN 338 (462)
T ss_dssp ---------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEE--EEE
T ss_pred cchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEE--EEE
Confidence 2 234556678999999999999988888777766543 45554 455
No 94
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.52 E-value=1.7e-07 Score=104.59 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=84.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++|+|||||+++|.+.... +. ...|+|++.....+.+ ++..+.|+|||
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~-----------------~~pg~tv~~~~~~~~~-----~~~~~~l~Dtp 60 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VA-----------------NWPGVTVEKKEGVFTY-----KGYTINLIDLP 60 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EE-----------------ECTTSCCEEEEEEEEE-----TTEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-cc-----------------CCCCceEEEEEEEEEE-----CCeEEEEEECC
Confidence 3458999999999999999999865321 11 1128888877777766 67999999999
Q ss_pred Ccccccc----------cccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhh-CCccCc
Q psy15088 479 ASPVTLL----------LPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVV-GDVDSS 547 (1291)
Q Consensus 479 Gh~~~~~----------l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~-~~~~~~ 547 (1291)
|+..+.. .-....+|++++|+|+... .....++....+.++|.++ ++| | +|... ......
T Consensus 61 G~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvil--v~N----K-~Dl~~~~~i~~~ 131 (258)
T 3a1s_A 61 GTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVIL--AMT----A-IDEAKKTGMKID 131 (258)
T ss_dssp CCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEE--EEE----C-HHHHHHTTCCBC
T ss_pred CcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEE--EEE----C-cCCCCccchHHH
Confidence 9854322 1111467999999998863 2234455666667888765 555 4 45432 122233
Q ss_pred HHHHHHHhCCC
Q psy15088 548 LPAVLDQLGIH 558 (1291)
Q Consensus 548 l~~i~~~lg~~ 558 (1291)
..++...+|+.
T Consensus 132 ~~~l~~~lg~~ 142 (258)
T 3a1s_A 132 RYELQKHLGIP 142 (258)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHcCCC
Confidence 56666777764
No 95
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.52 E-value=6e-08 Score=117.50 Aligned_cols=104 Identities=16% Similarity=0.276 Sum_probs=81.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+|+|.+|+|||||+|+|++....++...+ |+|++.....+.+ ++..+.|+||||+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~-----------------gTT~d~~~~~i~~-----~g~~~~l~DTaG~ 301 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-----------------GTTRDVISEEIVI-----RGILFRIVDTAGV 301 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS-----------------CCSSCSCCEEEEE-----TTEEEEEEESSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCC-----------------CeeeeeEEEEEec-----CCeEEEEEECCCc
Confidence 38999999999999999999988766665554 8898887777777 6889999999998
Q ss_pred c-cc----------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 P-VT----------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~-~~----------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
. .+ +++..+..+|++|+|+|+..+.+.++.+++... .++|.++ ++|
T Consensus 302 ~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piiv--V~N 358 (482)
T 1xzp_A 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLV--VIN 358 (482)
T ss_dssp CSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEE--EEE
T ss_pred cccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEE--EEE
Confidence 6 33 234556789999999999888777777776554 3566654 555
No 96
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.50 E-value=8.6e-08 Score=116.02 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=58.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|++|+|||||+|+|++....++...+ |+|++.....+.+ +++.++|+||||+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-----------------gtT~d~~~~~i~~-----~g~~l~liDT~G~~ 292 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMP-----------------GTTRDYIEECFIH-----DKTMFRLTDTAGLR 292 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEE-----TTEEEEEEC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCC-----------------CceEEEEEEEEEE-----CCeEEEEEECCCCC
Confidence 6999999999999999999987655554444 8898887777777 78999999999984
Q ss_pred cc----------cccccccccceEEEEecCCCccch----hhHhhHHHHHhhcCccchhhhhh
Q psy15088 482 VT----------LLLPDVKGKNYLMNIFDTPGMWDI----HVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~----------~~l~~~~~ad~~v~vida~~g~~~----qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+ ++...+..+|++++|+|+..+.+. ....+..... ++|.++ ++|
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIv--V~N 351 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLT--VAN 351 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEE--EEE
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEE--EEE
Confidence 32 245567789999999999988655 3444444332 456554 455
No 97
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.43 E-value=5.2e-07 Score=97.65 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred CceeEEecCCCccc----------cH---HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVN----------FS---DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~----------~~---~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..+.|+||||+.+ |. .........+|++|+|+|+.+++...+..+++++++.++|+++|+||+|+.
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGS
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccC
Confidence 45889999999743 22 233444455888999999999999999999999999999999999999986
Q ss_pred c
Q psy15088 281 M 281 (1291)
Q Consensus 281 ~ 281 (1291)
.
T Consensus 158 ~ 158 (223)
T 4dhe_A 158 T 158 (223)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.42 E-value=2.5e-07 Score=96.41 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=68.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|++|+|||||+++|.+.....+...+ |+|++.....+.+ ++..+.++||||..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-----------------~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIA-----------------GTTRDVLREHIHI-----DGMPLHIIDTAGLR 63 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSST-----------------TCCCSCEEEEEEE-----TTEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCCC-----------------CceeceeeEEEEE-----CCeEEEEEECCCcc
Confidence 7999999999999999999876433222222 5665544444555 56779999999984
Q ss_pred ccc----------ccccccccceEEEEecCCCccchhhHhhHHHHHhh---cCccchhhhhh
Q psy15088 482 VTL----------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHA---SAQRSFVEFVL 530 (1291)
Q Consensus 482 ~~~----------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~---~~~~~fv~fil 530 (1291)
... .......+|++++|+|+....+.+...++...... ++|.++ +.|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~il--v~N 123 (172)
T 2gj8_A 64 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITV--VRN 123 (172)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEE--EEE
T ss_pred cchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEE--EEE
Confidence 211 22345678999999999876544444554444332 345443 445
No 99
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.42 E-value=4.2e-07 Score=101.65 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=66.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++|+|||||+++|++........ ..++|+......+.+ ++..++|+|||
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-----------------~~~~t~~~~~~~~~~-----~~~~l~liDTp 92 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-----------------FQAEGLRPVMVSRTM-----GGFTINIIDTP 92 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-----------------SCC-CCCCEEEEEEE-----TTEEEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-----------------CCCcceeeEEEEEEE-----CCeeEEEEECC
Confidence 45699999999999999999999765432221 126677666666666 78899999999
Q ss_pred Cccccccc-----cc------ccccceEEEEecCCC-ccchhhHhhHHHHHh
Q psy15088 479 ASPVTLLL-----PD------VKGKNYLMNIFDTPG-MWDIHVRKFSKKAAH 518 (1291)
Q Consensus 479 Gh~~~~~l-----~~------~~~ad~~v~vida~~-g~~~qt~~~~~~~~~ 518 (1291)
||..+..+ +. ...+|++++|+++.. .++..+..+......
T Consensus 93 G~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~ 144 (262)
T 3def_A 93 GLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQ 144 (262)
T ss_dssp CSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 99644211 11 126789999976654 366666566555443
No 100
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.40 E-value=3.6e-07 Score=104.30 Aligned_cols=68 Identities=25% Similarity=0.202 Sum_probs=61.7
Q ss_pred CceeEEecCCCccc--------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVN--------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~--------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
+.+++++||||+.+ |...+..+++.+|++|+|+|+..+....++.+++.+++. ++|+++|+||+|+..
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 45899999999987 667788999999999999999999999999999999888 899999999999864
No 101
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.40 E-value=6.1e-07 Score=100.77 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=65.8
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+|+|++.....+... .|+|.+.....+.+ ++..++++||||
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-----------------~~~t~~~~~~~~~~-----~~~~l~iiDTpG 96 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPF-----------------QSEGPRPVMVSRSR-----AGFTLNIIDTPG 96 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-----------------SCCCSSCEEEEEEE-----TTEEEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCC-----------------CCcceeeEEEEEee-----CCeEEEEEECCC
Confidence 46999999999999999999997653222211 25565555555555 688999999999
Q ss_pred cccccccc-----------cccccceEEEEecCCC-ccchhhHhhHHHHHh
Q psy15088 480 SPVTLLLP-----------DVKGKNYLMNIFDTPG-MWDIHVRKFSKKAAH 518 (1291)
Q Consensus 480 h~~~~~l~-----------~~~~ad~~v~vida~~-g~~~qt~~~~~~~~~ 518 (1291)
+..+..+. ....+|++++|+|+.. .+...+..+......
T Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~ 147 (270)
T 1h65_A 97 LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITD 147 (270)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 95433111 1225799999977654 366666666665543
No 102
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.38 E-value=6.5e-08 Score=107.03 Aligned_cols=94 Identities=36% Similarity=0.654 Sum_probs=76.5
Q ss_pred CceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhccc--------------------------CCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGS 668 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~ 668 (1291)
.+|++||||++..|+..|...+... ...+.++++++|.+++++|+.+|+. ...
T Consensus 108 ~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 187 (243)
T 3tlx_A 108 KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLI 187 (243)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred CCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccccccc
Confidence 3799999999988887776554332 2345688999999999999998863 234
Q ss_pred CCCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 669 GRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 669 ~r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
+|.||+++.+++|+..|..++.|+..+|..++.+..+++.+
T Consensus 188 ~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~ 228 (243)
T 3tlx_A 188 QREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQ 228 (243)
T ss_dssp CCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC
Confidence 68899999999999999999999999999888777777653
No 103
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.34 E-value=4.8e-07 Score=99.55 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=61.4
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
....+|+++|++|+|||||+++|++...... ....+++|++.....+.+ ++..++|+||
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~-----~~~~i~liDT 85 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS----------------GTAAKSITKKCEKRSSSW-----KETELVVVDT 85 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-----------------------CCSCEEEEEEE-----TTEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc----------------CCCCCceeeeEEEEEEEe-----CCceEEEEEC
Confidence 4567999999999999999999997643211 011225666666566666 6889999999
Q ss_pred CCcccc------------c-ccccccccceEEEEecCCCccchhhHhhHHH
Q psy15088 478 PASPVT------------L-LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKK 515 (1291)
Q Consensus 478 pGh~~~------------~-~l~~~~~ad~~v~vida~~g~~~qt~~~~~~ 515 (1291)
||+... . .......+|++|+|+|+. .++..+..+...
T Consensus 86 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~ 135 (239)
T 3lxx_A 86 PGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG-RYTEEEHKATEK 135 (239)
T ss_dssp CSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHH
Confidence 997321 1 112233568999999986 454455444443
No 104
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.33 E-value=8.2e-07 Score=92.19 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEE
Q psy15088 395 DTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNI 474 (1291)
Q Consensus 395 ~~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~l 474 (1291)
..++...+|+++|++++|||||+++|++..... +...+++.+.....+.+ .+..+.+.+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~---~~~~~~~~i 62 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSG------------------SYITTIGVDFKIRTVEI---NGEKVKLQI 62 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---------------------CCTTTBSEEEEEEEEEE---TTEEEEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCC------------------ccCCCceeEEEEEEEEE---CCEEEEEEE
Confidence 345567799999999999999999998653211 11113343333333333 123478999
Q ss_pred EeCCCcccccc--cccccccceEEEEecCCCcc
Q psy15088 475 FDTPASPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 475 iDTpGh~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
+||||+..+.. ...+..+|++++|+|+...-
T Consensus 63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 95 (181)
T 3tw8_B 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE 95 (181)
T ss_dssp EEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH
T ss_pred EcCCCchhhhhhHHHHhccCCEEEEEEECCCHH
Confidence 99999975542 33456789999999998763
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.33 E-value=1.9e-06 Score=88.79 Aligned_cols=126 Identities=14% Similarity=0.179 Sum_probs=74.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||+++|.+.... ... ..|+|++.....+.+ ++..+.++||||+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~-----------------~~~~t~~~~~~~~~~-----~~~~l~i~Dt~G~ 60 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGN-----------------WPGVTVEKKEGEFEY-----NGEKFKVVDLPGV 60 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC----------------------CCCCCEEEEEE-----TTEEEEEEECCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccC-----------------CCCcceeeeEEEEEE-----CCcEEEEEECCCc
Confidence 48999999999999999999864311 110 115565544444555 5689999999998
Q ss_pred ccccc------c--c--cccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhh-CCccCcHH
Q psy15088 481 PVTLL------L--P--DVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVV-GDVDSSLP 549 (1291)
Q Consensus 481 ~~~~~------l--~--~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~-~~~~~~l~ 549 (1291)
..+.. + . ....+|++++++|+..- .+...++......++|.++ +.| | .|... ........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~il--v~n----K-~Dl~~~~~~~~~~~ 131 (165)
T 2wji_A 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLL--ALN----K-MDLAKSLGIEIDVD 131 (165)
T ss_dssp SCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEE--EEE----C-HHHHHHTTCCCCHH
T ss_pred ccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEE--EEE----c-hHhccccChhhHHH
Confidence 64321 1 0 11257899999998752 1223344445555677664 455 4 44322 12222345
Q ss_pred HHHHHhCCC
Q psy15088 550 AVLDQLGIH 558 (1291)
Q Consensus 550 ~i~~~lg~~ 558 (1291)
++...+|..
T Consensus 132 ~~~~~~~~~ 140 (165)
T 2wji_A 132 KLEKILGVK 140 (165)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHhCCC
Confidence 555666643
No 106
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.29 E-value=1.1e-06 Score=98.89 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=67.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-||+++|++|+|||||+|+|+........... .......+++++.....+.+ .+....++++||||+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~----------~~~~~~~t~~~~~~~~~~~~---~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPG----------PSHRIKKTVQVEQSKVLIKE---GGVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------CCCEEEEEEECC-----CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCC----------cccccCCceEEEEEEEEEec---CCeEEEEEEEECCCc
Confidence 38999999999999999999866433221100 00112334555555444444 223459999999998
Q ss_pred cccc-----------------------------ccccccccceEEEEecCCC-ccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PVTL-----------------------------LLPDVKGKNYLMNIFDTPG-MWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~~-----------------------------~l~~~~~ad~~v~vida~~-g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+.. .--.-.++|+++++++... ++.+.+..+++.... ++|.++ ++|
T Consensus 76 ~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~--V~n 152 (274)
T 3t5d_A 76 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIP--LIA 152 (274)
T ss_dssp SCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEE--EES
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEE--EEe
Confidence 3221 1001124678888886554 788888888887766 777765 555
No 107
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.29 E-value=1.7e-06 Score=92.30 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
.....+|+|+|++++|||||+++|++...... . ...++.+.....+.+ .+....+.|+|
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-----------------~~t~~~~~~~~~~~~---~~~~~~~~l~D 63 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-Y-----------------KATIGADFLTKEVMV---DDRLVTMQIWD 63 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-C-----------------CCCCSEEEEEEEEES---SSCEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCC-C-----------------CCcccceEEEEEEEE---CCEEEEEEEEe
Confidence 34567999999999999999999987642110 0 012222222222222 22567899999
Q ss_pred CCCcccccc--cccccccceEEEEecCCCcc
Q psy15088 477 TPASPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 477 TpGh~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
|||+..+.. ...+..+|++|+|+|+....
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (207)
T 1vg8_A 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPN 94 (207)
T ss_dssp ECSSGGGSCSCCGGGTTCSEEEEEEETTCHH
T ss_pred CCCcHHHHHhHHHHHhCCcEEEEEEECCCHH
Confidence 999976543 33455789999999998763
No 108
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.29 E-value=1.5e-06 Score=89.29 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=54.9
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|....-. .. ..|+......+.+ ++..+.++||||
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-------------------~~t~~~~~~~~~~-----~~~~~~~~Dt~G 60 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV--TT-------------------IPTIGFNVETVTY-----KNLKFQVWDLGG 60 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--CC-------------------CCCSSEEEEEEEE-----TTEEEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--Cc-------------------CCcCccceEEEEE-----CCEEEEEEECCC
Confidence 358999999999999999999865311 00 1111111223344 578999999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ ..+..+|++++|+|+...
T Consensus 61 ~~~~~~~~~~~~~~~d~ii~v~d~~~~ 87 (171)
T 1upt_A 61 LTSIRPYWRCYYSNTDAVIYVVDSCDR 87 (171)
T ss_dssp CGGGGGGGGGGCTTCSEEEEEEETTCC
T ss_pred ChhhhHHHHHHhccCCEEEEEEECCCH
Confidence 9755432 345578999999999876
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.29 E-value=1.7e-06 Score=90.74 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=68.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.|+|||||+++|.+... .. +...|+|++.....+.+ ++..+.++||||
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~-~~-----------------~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G 63 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV-YI-----------------GNWPGVTVEKKEGEFEY-----NGEKFKVVDLPG 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE-EE-----------------EECTTSCCEEEEEEEEE-----TTEEEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-cc-----------------cCCCCeeccceEEEEEe-----CCcEEEEEECCC
Confidence 35899999999999999999986421 11 11126676665555666 678999999999
Q ss_pred cccccc------cc----cccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 480 SPVTLL------LP----DVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~~------l~----~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
+..+.. +. ....+|++++++|+.. + .+...+.......+.|.++ +.|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~-~~~~~~~~~~~~~~~piil--v~n 120 (188)
T 2wjg_A 64 VYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-L-ERNLYLTLQLMEMGANLLL--ALN 120 (188)
T ss_dssp CSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-H-HHHHHHHHHHHTTTCCEEE--EEE
T ss_pred cCccccccHHHHHHHHHHhccCCCEEEEEecchh-H-HHHHHHHHHHHhcCCCEEE--EEE
Confidence 965431 11 1124789999999874 2 2334455555556677665 445
No 110
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.28 E-value=1.5e-06 Score=91.51 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=60.2
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+...+|+++|++|+|||||++.+.+........ .........+...|.+.....+ ....++...+.++||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~------~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKG------EMVSLATEDERTLFFDFLPLDI----GEVKGFKTRFHLYTV 81 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBC------CCEEEECSSCEEEEEEECCSSC----CCSSSCEEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccc------cccccccccccceeeeeccccc----ccccCCceEEEEEeC
Confidence 345699999999999999997776543221110 0000000011111222221111 122346789999999
Q ss_pred CCcccccccc--cccccceEEEEecCCCccchhhHh
Q psy15088 478 PASPVTLLLP--DVKGKNYLMNIFDTPGMWDIHVRK 511 (1291)
Q Consensus 478 pGh~~~~~l~--~~~~ad~~v~vida~~g~~~qt~~ 511 (1291)
||+..+..+. .+..+|++|+|+|+..+...++..
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~ 117 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAE 117 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHH
Confidence 9997655332 345789999999999765444443
No 111
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=2.1e-06 Score=89.16 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=54.3
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+...+|+++|++++|||||+++|+......... ...++++.....+.. .+....+.++||
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------~~t~~~~~~~~~~~~---~~~~~~~~~~Dt 67 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-----------------ISTVGIDFRNKVLDV---DGVKVKLQMWDT 67 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-----------------CCCCSCEEEEEEEEE---TTEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-----------------CCceeeEEEEEEEEE---CCEEEEEEEEeC
Confidence 344599999999999999999998764221110 112222222112222 224568999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCcc
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
||+..+. .......+|++++|+|+...-
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 97 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKA 97 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHH
Confidence 9997554 334556789999999998763
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.26 E-value=1e-06 Score=100.88 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=60.0
Q ss_pred CceeEEecCCCccccH----------HHHHHHhhhcCcEEEEEECCCCCchhHHHH-HHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFS----------DEVTAAMRLCDGVVLFVDAAEGVMLNTERL-LKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~----------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..+.++||||+.++. ..+..+++.+|++|+|+|+..+.+.++..+ ++.+++.++|+++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 4578999999996543 567889999999999999999999999999 888888899999999999986
No 113
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.26 E-value=5.2e-07 Score=103.52 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=42.0
Q ss_pred CCeEEEEEeCCCccc-------------c--cccccccccceEEEEecC-CCccchhh-HhhHHHHHhhcCccchhhhhh
Q psy15088 468 KNYLMNIFDTPASPV-------------T--LLLPDVKGKNYLMNIFDT-PGMWDIHV-RKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~-------------~--~~l~~~~~ad~~v~vida-~~g~~~qt-~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+..++|+||||+.. + .....+..+|++++++|+ ..++..++ ..++......++|.++ ++|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~--v~N 206 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIG--VIT 206 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEE--EEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEE--EEc
Confidence 457899999999842 1 133445678999999996 56665444 4677777667777765 555
No 114
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.25 E-value=2e-06 Score=96.63 Aligned_cols=144 Identities=11% Similarity=0.159 Sum_probs=85.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||+++|.+.. ..+..-+ |+|++.....+.+ +..+.++||||+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~p-----------------g~tv~~~~~~~~~------~~~l~l~DtpG~ 59 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN-QRVGNWP-----------------GVTVERKSGLVKK------NKDLEIQDLPGI 59 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC-CCCCSSS-----------------CCCCSCEEEECTT------CTTEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC-CcccCCC-----------------CCcEEEEEEEEec------CCeEEEEECCCc
Confidence 489999999999999999998653 1111111 7777654443321 567999999998
Q ss_pred ccccc------c----ccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhh-CCccCcHH
Q psy15088 481 PVTLL------L----PDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVV-GDVDSSLP 549 (1291)
Q Consensus 481 ~~~~~------l----~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~-~~~~~~l~ 549 (1291)
..+.. + -....+|++++|+|+... .....+..+..+.++|.++ ++| | +|... ........
T Consensus 60 ~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~il--v~N----K-~Dl~~~~~~~~~~~ 130 (272)
T 3b1v_A 60 YSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTI--ALN----M-IDVLDGQGKKINVD 130 (272)
T ss_dssp SCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEE--EEE----C-HHHHHHTTCCCCHH
T ss_pred CccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEE--EEE----C-hhhCCcCCcHHHHH
Confidence 53321 1 111358999999998763 2334455555667788765 455 3 45432 12233456
Q ss_pred HHHHHhCCCcChhhh--hcCchHHHHHHHh
Q psy15088 550 AVLDQLGIHMNKEES--KINIRPLLRLVYK 577 (1291)
Q Consensus 550 ~i~~~lg~~l~~~~~--~~~~~~~l~~i~~ 577 (1291)
++...+|+.+-.... ..+...++..+.+
T Consensus 131 ~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 131 KLSYHLGVPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp HHHHHHTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEccCCCCHHHHHHHHHH
Confidence 677777764322111 1345555554443
No 115
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.25 E-value=4e-07 Score=103.98 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=57.5
Q ss_pred CceeEEecCCCcc-c--------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHV-N--------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~-~--------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..++++||||+. . |...+..+++.+|++++|+|+.. +.++++.+++.+++.++|+++|+||+|...
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 4578999999997 2 33334677899999999999988 999999999999888999999999999863
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.24 E-value=9.9e-07 Score=93.14 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=65.2
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhc-CCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQT-HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~-~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
...+|+++|++++|||||+++|++.. ...... ..|+|+...... + +..+.++||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~t~~~~~~~--~------~~~~~l~Dt 76 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS-----------------KPGKTQTLNFYI--I------NDELHFVDV 76 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC------------------------------CCEEEEE--E------TTTEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC-----------------CCCceeeEEEEE--E------CCcEEEEEC
Confidence 45699999999999999999998653 111111 114454433221 1 235899999
Q ss_pred CCccc----------cc-----ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 478 PASPV----------TL-----LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~----------~~-----~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
||+.. +. .++....+|++++|+|+..+.+.++..+.......+.|.++ ++|
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~--v~n 142 (195)
T 1svi_A 77 PGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIV--IAT 142 (195)
T ss_dssp CCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE--EEE
T ss_pred CCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 99521 11 12233345899999999988877777766666666777654 445
No 117
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.24 E-value=1.6e-06 Score=89.02 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=57.1
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|++..-... .....|.+.....+.+. +....+.++||||
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dt~G 64 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN----------------INPTIGASFMTKTVQYQ-----NELHKFLIWDTAG 64 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------CCCCCSEEEEEEEEEET-----TEEEEEEEEEECC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCceeEEEEEEEEEEC-----CeEEEEEEEcCCC
Confidence 35999999999999999999986642100 01112444443333322 2568899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCcc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
+..+..+ .....+|++++|+|+...-
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 92 (170)
T 1z0j_A 65 LERFRALAPMYYRGSAAAIIVYDITKEE 92 (170)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCHH
T ss_pred chhhhcccHhhCcCCCEEEEEEECcCHH
Confidence 9755433 2345779999999998763
No 118
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.23 E-value=8.6e-07 Score=96.00 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=68.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhc-CCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQT-HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~-~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
...+|+++|..|+|||||+++|+... ..... ...|+|+......+.. ++..+.++||
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~-----~~~~~~i~Dt 71 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYV-----------------ATLGVEVHPLVFHTNR-----GPIKFNVWDT 71 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEE-----------------TTTTEEEEEEEEEETT-----EEEEEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-----------------CccceeEEEEEEEECC-----EEEEEEEEeC
Confidence 34599999999999999999966432 11111 1226666655554443 6789999999
Q ss_pred CCcccccccc--cccccceEEEEecCCCccchhhH-hhHHHHHhh--cCccchhhhhh
Q psy15088 478 PASPVTLLLP--DVKGKNYLMNIFDTPGMWDIHVR-KFSKKAAHA--SAQRSFVEFVL 530 (1291)
Q Consensus 478 pGh~~~~~l~--~~~~ad~~v~vida~~g~~~qt~-~~~~~~~~~--~~~~~fv~fil 530 (1291)
||+..+..+. ....+|++++|+|+....+-+.. .+....... ++|.++ +.|
T Consensus 72 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il--v~n 127 (221)
T 3gj0_A 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL--CGN 127 (221)
T ss_dssp CSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEE--EEE
T ss_pred CChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE--EEE
Confidence 9997655332 34478999999999876433332 233333322 555554 455
No 119
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.23 E-value=2.6e-06 Score=89.61 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=57.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|.+++|||||+++|+........ ....|++.....+.+. ++...+.++|||
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~ 79 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF----------------VSTVGIDFKVKTVYRH-----DKRIKLQIWDTA 79 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----------------CCCCCCEEEEEEEEET-----TEEEEEEEEECC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc----------------CCceeEEEEEEEEEEC-----CeEEEEEEEeCC
Confidence 3469999999999999999999866421100 0111444433333222 256789999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCc
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
|+..+. .......+|++++|+|+...
T Consensus 80 G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 107 (189)
T 2gf9_A 80 GQERYRTITTAYYRGAMGFLLMYDIANQ 107 (189)
T ss_dssp SCCSSCCSGGGGGTTCSEEEEEEETTCH
T ss_pred CcHHHhhhHHHhccCCCEEEEEEECCCH
Confidence 997554 33345578999999998765
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.23 E-value=1.5e-06 Score=91.51 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=69.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|..++|||||+++|++......... .|+|...... . .+..+.++|||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~t~~~~~~---~-----~~~~~~i~Dt~ 76 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKT-----------------PGKTRSINFY---L-----VNSKYYFVDLP 76 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSS-----------------CCCCCCEEEE---E-----ETTTEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCC-----------------CCCccCeEEE---E-----ECCcEEEEECC
Confidence 345999999999999999999987752222111 1444433211 1 23458899999
Q ss_pred Ccc----------ccc-----ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 479 ASP----------VTL-----LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 479 Gh~----------~~~-----~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
|.. .+. .++....+|++++|+|+..+.......+.......++|.++ ++|
T Consensus 77 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~--v~n 141 (195)
T 3pqc_A 77 GYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTI--VLT 141 (195)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE--EEE
T ss_pred CCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEE--EEE
Confidence 942 111 23334556899999999888777777777777777777765 455
No 121
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.22 E-value=2.2e-06 Score=89.64 Aligned_cols=87 Identities=13% Similarity=0.216 Sum_probs=57.1
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
++..+|+++|++++|||||+++|+........ ...++.+.....+.+ .++...+.++||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~---~~~~~~~~l~Dt 66 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NHTIGVEFGSKIINV---GGKYVKLQIWDT 66 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCSEEEEEEEEEEE---TTEEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCccceEEEEEEEEE---CCEEEEEEEEeC
Confidence 45569999999999999999999865422110 012222222222222 124478999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCcc
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
||+..+. ....+..+|++++|+|+...-
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 96 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRE 96 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHH
Confidence 9997654 233455789999999998753
No 122
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=2.2e-06 Score=90.60 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCC-cccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHP-GYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~-i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
..+|+++|..++|||||+++|+...-. ... ...|++.....+.+. +....+.++|||
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~ 80 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS-----------------PTIGASFMTKTVPCG-----NELHKFLIWDTA 80 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCC-----------------CCSSEEEEEEEEECS-----SSEEEEEEEEEC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcC-----------------CCcceeEEEEEEEeC-----CEEEEEEEEcCC
Confidence 459999999999999999999865421 111 111444444333332 267899999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++++|+|+...
T Consensus 81 G~~~~~~~~~~~~~~~d~iilV~d~~~~ 108 (192)
T 2fg5_A 81 GQERFHSLAPMYYRGSAAAVIVYDITKQ 108 (192)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCT
T ss_pred CchhhHhhhHHhhccCCEEEEEEeCCCH
Confidence 99755432 334578999999998775
No 123
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.21 E-value=2.1e-06 Score=90.59 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
..+.+.+|+++|++++|||||+++|+...... +...+++.+.....+.+ .+..+.+.|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~ 70 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE------------------SYISTIGVDFKIRTIEL---DGKTIKLQIW 70 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCS------------------CCCCCSSEEEEEEEEEE---TTEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCC------------------CCCCcccceEEEEEEEE---CCEEEEEEEE
Confidence 34556799999999999999999998653211 11113333333333333 1244789999
Q ss_pred eCCCccccccc--ccccccceEEEEecCCCc
Q psy15088 476 DTPASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 476 DTpGh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
||||+..+..+ ..+..+|++++|+|+...
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 101 (196)
T 3tkl_A 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQ 101 (196)
T ss_dssp EECCSGGGCTTHHHHHTTCSEEEEEEETTCH
T ss_pred ECCCcHhhhhhHHHHHhhCCEEEEEEECcCH
Confidence 99999755432 234577999999998875
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.20 E-value=2.3e-06 Score=90.43 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=55.6
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++|+|||||+++|....-... ..|+......+.+ ++..+.++||||
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~---------------------~~t~~~~~~~~~~-----~~~~~~i~Dt~G 76 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATL---------------------QPTWHPTSEELAI-----GNIKFTTFDLGG 76 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCC---------------------CCCCSCEEEEEEE-----TTEEEEEEECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcc---------------------ccCCCCCeEEEEE-----CCEEEEEEECCC
Confidence 35999999999999999999986532111 1122222233444 568999999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..++.+ .....+|++++|+|+...
T Consensus 77 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 103 (190)
T 1m2o_B 77 HIQARRLWKDYFPEVNGIVFLVDAADP 103 (190)
T ss_dssp SGGGTTSGGGGCTTCCEEEEEEETTCG
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCh
Confidence 9765533 344578999999999876
No 125
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.19 E-value=2.4e-06 Score=88.80 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=55.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|+.++|||||+++|++....... +...|.+..... +.+ .+....+.++|||
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~--~~~---~~~~~~~~i~Dt~ 69 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----------------ESTIGAAFFSQT--LAV---NDATVKFEIWDTA 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS----------------CCCSCCSEEEEE--EEE---TTEEEEEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC----------------CCCceeEEEEEE--EEE---CCEEEEEEEEeCC
Confidence 3459999999999999999999865321100 001122222222 222 2246789999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCcc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
|+..+..+ ..+..+|++++|+|+....
T Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
T 2efe_B 70 GQERYHSLAPMYYRGAAAAIIVFDVTNQA 98 (181)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCHH
T ss_pred CChhhhhhhHHHhccCCEEEEEEECCCHH
Confidence 99765433 2345689999999988764
No 126
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.18 E-value=2.1e-06 Score=88.02 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=56.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+...-... .+...|.+.....+.+.. .++.+.++||||
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~G 64 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF----------------QESTIGAAFLTQTVCLDD-----TTVKFEIWDTAG 64 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCSSEEEEEEEEEETT-----EEEEEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceEEEEEEEEECC-----EEEEEEEEeCCC
Confidence 45899999999999999999986532110 011224443333333322 578899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 65 QERYHSLAPMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp SGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred cHHhhhhhHHhccCCCEEEEEEECCCH
Confidence 9765432 334578999999998876
No 127
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.18 E-value=3.4e-06 Score=87.29 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=56.2
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
.....+|+++|++++|||||+++|+...-.. +....++.+.....+.+ .+....+.++|
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D 62 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT------------------QLFHTIGVEFLNKDLEV---DGHFVTMQIWD 62 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEE---TTEEEEEEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeEEEEEEEE---CCEEEEEEEEe
Confidence 3445699999999999999999998653110 00112222222222333 12446899999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCcc
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
|||+..+. .......+|++++|+|+...-
T Consensus 63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 93 (177)
T 1wms_A 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ 93 (177)
T ss_dssp CCCCGGGHHHHGGGGTTCSEEEEEEETTCHH
T ss_pred CCCchhhhhhHHHHHhcCCEEEEEEECcCHH
Confidence 99997554 223445679999999988763
No 128
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.18 E-value=2.6e-06 Score=89.70 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=56.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.++|||||+++|++....... ...|+......+.+ ++..+.++||||
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~t~~~~~~~~~~-----~~~~~~l~Dt~G 76 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN-------------------ILPTIGFSIEKFKS-----SSLSFTVFDMSG 76 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-------------------CCCCSSEEEEEEEC-----SSCEEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------cCCccceeEEEEEE-----CCEEEEEEECCC
Confidence 349999999999999999999866421110 01222222223344 568999999999
Q ss_pred cccccc--cccccccceEEEEecCCCc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
+..+.. ...+..+|++++|+|+...
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~ 103 (190)
T 2h57_A 77 QGRYRNLWEHYYKEGQAIIFVIDSSDR 103 (190)
T ss_dssp STTTGGGGGGGGGGCSEEEEEEETTCH
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 975543 2345678999999999875
No 129
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.17 E-value=3.4e-06 Score=89.09 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.4
Q ss_pred eEEEEEeCCCccccccc--ccccccceEEEEecCCCcc
Q psy15088 470 YLMNIFDTPASPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 470 ~~~~liDTpGh~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
..+.|+||||+..+..+ ..+..+|++++|+|+..+-
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~ 130 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN 130 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 88999999999765432 3345789999999998774
No 130
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.17 E-value=2.7e-06 Score=87.98 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=57.1
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
++..+|+++|+.++|||||+++|++....... ....|.+.....+.+ .+....+.++||
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~-----~~~~~~~~l~Dt 71 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC----------------PHTIGVEFGTRIIEV-----SGQKIKLQIWDT 71 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------------TTSCCCCEEEEEEEE-----TTEEEEEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEE-----CCeEEEEEEEEC
Confidence 34569999999999999999999866421100 001133322222222 225678999999
Q ss_pred CCcccccc--cccccccceEEEEecCCCcc
Q psy15088 478 PASPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 478 pGh~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
||+..+.. ...+..+|++++|+|+....
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 101 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRRS 101 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCHH
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCHH
Confidence 99975542 23345779999999998763
No 131
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.17 E-value=3.2e-06 Score=90.05 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=51.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++|+|||||+++|.+..-... ..|+......+.+ ++..+.++|||
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~---------------------~~t~~~~~~~~~~-----~~~~l~i~Dt~ 77 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQH---------------------VPTLHPTSEELTI-----AGMTFTTFDLG 77 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------------------------CCCCCSCEEEEE-----TTEEEEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCcc---------------------CCCCCceeEEEEE-----CCEEEEEEECC
Confidence 345899999999999999999975421100 1122222233444 56899999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..++.+ .....+|++++|+|+...
T Consensus 78 G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 105 (198)
T 1f6b_A 78 GHIQARRVWKNYLPAINGIVFLVDCADH 105 (198)
T ss_dssp C----CCGGGGGGGGCSEEEEEEETTCG
T ss_pred CcHhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 99766543 345578999999999765
No 132
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=92.10 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=54.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++++|||||+++|+...-... .....|.+.....+.+. +....+.|+|||
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~ 85 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFREN----------------ISATLGVDFQMKTLIVD-----GERTVLQLWDTA 85 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEEEEEET-----TEEEEEEEEECT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCcc----------------CCCCccceeEEEEEEEC-----CEEEEEEEEECC
Confidence 456999999999999999999986532100 00011333332222222 256789999999
Q ss_pred Ccccccc--cccccccceEEEEecCCCcc
Q psy15088 479 ASPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 479 Gh~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
|+..+.. ...+..+|++|+|+|+....
T Consensus 86 G~~~~~~~~~~~~~~~d~iilv~d~~~~~ 114 (199)
T 2p5s_A 86 GQERFRSIAKSYFRKADGVLLLYDVTCEK 114 (199)
T ss_dssp TCTTCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred CCcchhhhHHHHHhhCCEEEEEEECCChH
Confidence 9975542 23345689999999998764
No 133
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.16 E-value=4e-06 Score=88.60 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=55.8
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
....+|+++|+.++|||||+++|+......+... ...|.++. .+.+ .+..+.|+||
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---------------~t~~~~~~----~~~~-----~~~~~~i~Dt 70 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---------------ATVGYNVE----TFEK-----GRVAFTVFDM 70 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---------------CCSSEEEE----EEEE-----TTEEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---------------cccceeEE----EEEe-----CCEEEEEEEC
Confidence 3456999999999999999999986542211000 01133222 2233 7899999999
Q ss_pred CCccccccc--ccccccceEEEEecCCCc
Q psy15088 478 PASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 478 pGh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
||+..+..+ ..+..+|++|+|+|+...
T Consensus 71 ~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 99 (199)
T 4bas_A 71 GGAKKFRGLWETYYDNIDAVIFVVDSSDH 99 (199)
T ss_dssp CCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred CCCHhHHHHHHHHHhcCCEEEEEEECCcH
Confidence 999765432 335678999999999876
No 134
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.15 E-value=2.5e-06 Score=93.04 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=62.2
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|.+++|||||+++|++..-. ... ..++|.+.....+.+ ++..+.|+|||
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~-----------------~~~~t~~~~~~~~~~-----~~~~~~l~Dtp 84 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQS-----------------YSFTTKNLYVGHFDH-----KLNKYQIIDTP 84 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EEC-----------------C-----CEEEEEEEE-----TTEEEEEEECT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-----------------CCCcceeeeeeeeec-----CCCeEEEEECC
Confidence 3459999999999999999999865311 111 114444443333333 56889999999
Q ss_pred Cccc----------cccccc-ccccceEEEEecCCCcc--c-hhhHhhHHHHHhh--cCccch
Q psy15088 479 ASPV----------TLLLPD-VKGKNYLMNIFDTPGMW--D-IHVRKFSKKAAHA--SAQRSF 525 (1291)
Q Consensus 479 Gh~~----------~~~l~~-~~~ad~~v~vida~~g~--~-~qt~~~~~~~~~~--~~~~~f 525 (1291)
|+.. +..+.. ...+|++++|+|+.... + .....+....... ++|.++
T Consensus 85 G~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piil 147 (228)
T 2qu8_A 85 GLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVI 147 (228)
T ss_dssp TTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEE
T ss_pred CCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEE
Confidence 9932 122222 34668999999998763 2 2233444444443 555543
No 135
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.15 E-value=2.9e-06 Score=88.01 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=55.1
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
+.+..+|+++|+.++|||||+++|++..- ..... +++.......+.+ .+....+.++|
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~~~D 63 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYD-----------------PTIEDSYTKICSV---DGIPARLDILD 63 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcC--ccccC-----------------CCcCceEEEEEEE---CCEEEEEEEEE
Confidence 44567999999999999999999987631 11000 1111111111222 22457899999
Q ss_pred CCCccccccc--ccccccceEEEEecCCCc
Q psy15088 477 TPASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 477 TpGh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|||+..+..+ .....+|++++|+|+...
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDR 93 (181)
T ss_dssp CCCTTTTSCCHHHHHHHCSEEEEEEETTCH
T ss_pred CCCchhhHHHHHHHHhhCCEEEEEEeCCCH
Confidence 9999755432 224467999999998875
No 136
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.15 E-value=4.3e-06 Score=86.77 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=51.3
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFD 476 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liD 476 (1291)
.+...+|+++|+.++|||||+++|++..-... ....++.+.....+.+. .+....+.++|
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~l~D 64 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ------------------YKATIGADFLTKEVTVD--GDKVATMQVWD 64 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT------------------C---CCCSCEEEEECCS--SSCCEEEEEEC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc------------------cCCccceEEEEEEEEEc--CCcEEEEEEEE
Confidence 34567999999999999999999986532110 00011112111222221 12467899999
Q ss_pred CCCccccc--ccccccccceEEEEecCCCcc
Q psy15088 477 TPASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 477 TpGh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
|||+..+. .......+|++++|+|+...-
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 95 (182)
T 1ky3_A 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNAS 95 (182)
T ss_dssp CC----------CCSTTCCEEEEEEETTCHH
T ss_pred CCCChHhhhhhHHHhhcCCEEEEEEECCChH
Confidence 99997554 233456789999999988763
No 137
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.14 E-value=3.8e-06 Score=89.38 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=56.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|++++|||||+++|+...-.... ....|++.....+.+. +....+.|+|||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~ 65 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAF----------------VSTVGIDFKVKTIYRN-----DKRIKLQIWDTA 65 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCC----------------CCCCSEEEEEEEEEET-----TEEEEEEEEEEC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------------CCccceeEEEEEEEEC-----CeEEEEEEEECC
Confidence 3469999999999999999999865321100 0011433333322222 256789999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCc
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
|+..+. ....+..+|++|+|+|+...
T Consensus 66 G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 93 (203)
T 1zbd_A 66 GLERYRTITTAYYRGAMGFILMYDITNE 93 (203)
T ss_dssp CSGGGHHHHHTTGGGCSEEEEEEETTCH
T ss_pred CchhhcchHHHhhcCCCEEEEEEECcCH
Confidence 997554 23345578999999998875
No 138
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.14 E-value=4e-06 Score=85.23 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred CceeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.. +.......++.+|++|+|+|+..+....+..+.+++++.++|+++|+||+|...
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 55789999999987 445567789999999999999999998888899999989999999999999874
No 139
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.14 E-value=4e-06 Score=87.32 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=53.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++++|||||+++|+...- ..... ...|.+. ...+.+ .+..+.+.++|||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~--------------~t~~~~~---~~~~~~---~~~~~~~~l~Dt~ 62 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYD--------------PTIENTF---TKLITV---NGQEYHLQLVDTA 62 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCC--------------TTCCEEE---EEEEEE---TTEEEEEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCC--------------CCccccE---EEEEEE---CCEEEEEEEEeCC
Confidence 346999999999999999999985431 11000 0012221 111112 2245788999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++++|+|+...
T Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDINGYILVYSVTSI 90 (181)
T ss_dssp CCCTTCCCCGGGTTTCSEEEEEEETTCH
T ss_pred CchhhhHHHHHHHhcCCEEEEEEECCCH
Confidence 99765533 234468999999998864
No 140
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.14 E-value=1.3e-06 Score=90.70 Aligned_cols=68 Identities=28% Similarity=0.408 Sum_probs=61.1
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.......+..+|++|+|+|+..+...++.+.++.+...++|+++|+||+|+..
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 56788999999998876666778899999999999999999999999998888999999999999864
No 141
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.14 E-value=5.6e-06 Score=87.02 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=54.9
Q ss_pred CceeEEecCCCc----------cccH---HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGH----------VNFS---DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~----------~~~~---~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+.++.++||||+ ..+. .........+|++++|+|+..+....+..++++++..++|+++|+||+|..
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 457889999994 2233 233444455699999999999999999999999999999999999999986
Q ss_pred c
Q psy15088 281 M 281 (1291)
Q Consensus 281 ~ 281 (1291)
.
T Consensus 147 ~ 147 (195)
T 3pqc_A 147 K 147 (195)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.14 E-value=3.4e-06 Score=88.16 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=55.2
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|..++|||||+++|++..-... ....|.+. ..+.+ ++..+.++||||
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~t~~~~~----~~~~~-----~~~~~~i~Dt~G 74 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-----------------SPTIGSNV----EEIVI-----NNTRFLMWDIGG 74 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEE-----------------ECCSSSSC----EEEEE-----TTEEEEEEEESS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCcc-----------------CCcCceee----EEEEE-----CCEEEEEEECCC
Confidence 35999999999999999999986532100 00112222 22334 579999999999
Q ss_pred cccccc--cccccccceEEEEecCCCc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
+..+.. ...+..+|++++|+|+...
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~ 101 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDR 101 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCH
Confidence 975542 3345678999999999876
No 143
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.14 E-value=3.1e-06 Score=89.26 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=57.6
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
++..+|+|+|++++|||||+++|++....... ....|++.....+.+. +....+.|+||
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt 81 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------------RTTIGVEFSTRTVMLG-----TAAVKAQIWDT 81 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------------CCCSSEEEEEEEEEET-----TEEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC-----CEEEEEEEEeC
Confidence 44569999999999999999999876432110 0111333322222222 25788999999
Q ss_pred CCccccccc--ccccccceEEEEecCCCcc
Q psy15088 478 PASPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 478 pGh~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
||+..+..+ .....+|++|+|+|+....
T Consensus 82 ~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~ 111 (193)
T 2oil_A 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQ 111 (193)
T ss_dssp SCCCTTCTTHHHHHTTCCEEEEEEETTCHH
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECCCHH
Confidence 999755432 2345779999999998753
No 144
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.13 E-value=2.9e-06 Score=89.14 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=54.1
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|....- .. . ....|.+. .++.+ ++..+.++||||
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~--~~------------~---~~t~~~~~----~~~~~-----~~~~~~~~Dt~G 75 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDV--VT------------T---VPTVGVNL----ETLQY-----KNISFEVWDLGG 75 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCC--EE------------E---CSSTTCCE----EEEEE-----TTEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CC------------c---CCCCceEE----EEEEE-----CCEEEEEEECCC
Confidence 45899999999999999999964321 10 0 00112221 22334 578999999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~ 102 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDR 102 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCC
T ss_pred CHhHHHHHHHHhhcCCEEEEEEeCCCH
Confidence 9755432 345678999999999865
No 145
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.12 E-value=3.6e-06 Score=88.17 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++++|||||+++|++.. .....+ ..|.+. ..+.+ ++..+.++|||
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~---------------t~~~~~----~~~~~-----~~~~~~~~Dt~ 70 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP---------------TLGFNI----KTLEH-----RGFKLNIWDVG 70 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC---------------CSSEEE----EEEEE-----TTEEEEEEEEC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc---------------cCccce----EEEEE-----CCEEEEEEECC
Confidence 34699999999999999999998654 110000 113222 22333 57899999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCc
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
|+..+. .......+|++++|+|+...
T Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 98 (186)
T 1ksh_A 71 GQKSLRSYWRNYFESTDGLIWVVDSADR 98 (186)
T ss_dssp CSHHHHTTGGGGCTTCSEEEEEEETTCG
T ss_pred CCHhHHHHHHHHhcCCCEEEEEEECcCH
Confidence 996543 22345578999999999876
No 146
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.12 E-value=3.8e-06 Score=85.73 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=53.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||+++|+...-. .. .-|+......+.+ ++..+.++||||+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~~-------------------~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--TT-------------------IPTIGFNVETVEY-----KNISFTVWDVGGQD 55 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--CC-------------------CCCSSCCEEEEEC-----SSCEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--cc-------------------cCcCceeEEEEEE-----CCEEEEEEEcCCCh
Confidence 7999999999999999999865311 00 0111111122333 67899999999997
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++|+|+...
T Consensus 56 ~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 56 KIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp GGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred hhHHHHHHHhccCCEEEEEEECCCH
Confidence 65432 235678999999999865
No 147
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.12 E-value=3.9e-07 Score=98.57 Aligned_cols=93 Identities=32% Similarity=0.575 Sum_probs=73.8
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhc--------------------------ccCCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKR--------------------------GAEGSG 669 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~r--------------------------g~~~~~ 669 (1291)
+|++||||++..|+..|...+... ...+.++++++|.+++.+|+.+| +....+
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccC
Confidence 789999999988777666544321 12346789999999999999988 233457
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
|.+++++.+++|+..|...+.|+..+|..++.+..+++.+
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~ 199 (216)
T 3dl0_A 160 RADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQ 199 (216)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 8899999999999999999999999998877777676643
No 148
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=3.3e-06 Score=88.63 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=52.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+....... ....|.+ ...+.+ ++..+.++||||
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------------~~t~~~~----~~~~~~-----~~~~~~i~Dt~G 69 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-----------------SPTIGSN----VEEIVI-----NNTRFLMWDIGG 69 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEE-----------------ECCSCSS----CEEEEE-----TTEEEEEEECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------cCCCccc----eEEEEE-----CCEEEEEEECCC
Confidence 45999999999999999999985432100 0011222 223334 579999999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 70 ~~~~~~~~~~~~~~~d~ii~v~d~~~~ 96 (187)
T 1zj6_A 70 QESLRSSWNTYYTNTEFVIVVVDSTDR 96 (187)
T ss_dssp ----CGGGHHHHTTCCEEEEEEETTCT
T ss_pred CHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 9755433 234578999999999876
No 149
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.11 E-value=4.1e-06 Score=85.71 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=54.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||+++|++..-... .. ..-|.+.....+.+ .+....+.++||||+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~---------------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAEN-KE---------------PTIGAAFLTQRVTI-----NEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTT-CC---------------CCSSEEEEEEEEEE-----TTEEEEEEEEEECCSG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CC---------------CccceeEEEEEEEE-----CCEEEEEEEEECCCCh
Confidence 899999999999999999986542110 00 01133332222222 2256789999999997
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ ..+..+|++++|+|+...
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 64 RFASLAPXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp GGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred hhhhhhhhhhccCcEEEEEEecCCh
Confidence 55432 334577999999999876
No 150
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.10 E-value=2.4e-06 Score=96.99 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=69.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCC-----cccCCccc----------------ccccccccc--ccc----------c
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHP-----GYRQPAEE----------------KNLRYTDTL--FTE----------Q 447 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~-----i~~~~~~~----------------~~~~~~D~~--~~E----------~ 447 (1291)
.+|+|+|.+|+|||||+|+|++.... ++...+.. .+..+++.. ..+ .
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999987543 21111100 000001111 000 0
Q ss_pred ccCceeeeccceecccccCCCCeEEEEEeCCCccc-------------c--cccccccccceEE-EEecCCCccchhhH-
Q psy15088 448 ERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV-------------T--LLLPDVKGKNYLM-NIFDTPGMWDIHVR- 510 (1291)
Q Consensus 448 erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~-------------~--~~l~~~~~ad~~v-~vida~~g~~~qt~- 510 (1291)
.+|++.+...+.+..+ ....++|+||||+.. + .....+..++.++ +|+|+..++..++.
T Consensus 107 ~~gi~~~~~~~~~~~~----~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 107 NKGISPVPINLRVYSP----HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp TTCCCSCCEEEEEEET----TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred CCCccccceEEEEeCC----CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 1233322222222111 247899999999731 1 1222333556666 68899998877774
Q ss_pred hhHHHHHhhcCccchhhhhh
Q psy15088 511 KFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 511 ~~~~~~~~~~~~~~fv~fil 530 (1291)
.+++.....+.|.++ ++|
T Consensus 183 ~~~~~~~~~~~~~i~--V~N 200 (299)
T 2aka_B 183 KIAKEVDPQGQRTIG--VIT 200 (299)
T ss_dssp HHHHHHCTTCSSEEE--EEE
T ss_pred HHHHHhCCCCCeEEE--EEE
Confidence 566666666777765 555
No 151
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.10 E-value=3.5e-06 Score=85.92 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=51.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++|+|||||+++|+...-... .. .++.+.....+.+ .+....+.++||||+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~~~--~~-----------------~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFIEK--YD-----------------PTIEDFYRKEIEV---DSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSC--CC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCccc--CC-----------------CCcceeEEEEEEE---CCEEEEEEEEECCCch
Confidence 899999999999999999986532110 00 1110111111112 2245679999999997
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++++|+...
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (167)
T 1kao_A 63 QFASMRDLYIKNGQGFILVYSLVNQ 87 (167)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred hhHHHHHHHhccCCEEEEEEeCCCH
Confidence 55422 234467899999998875
No 152
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.4e-06 Score=101.83 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=64.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|||+|.||+|||||.|+|.+.. ..+..-+ ++|++.....+.+ .+..|.|+||||..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~p-----------------ftT~~~~~g~~~~-----~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE-SEAAEYE-----------------FTTLVTVPGVIRY-----KGAKIQMLDLPGII 130 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC-CCGGGTC-----------------SSCCCEEEEEEEE-----TTEEEEEEECGGGC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC-CcccCCC-----------------CceeeeeeEEEEe-----CCcEEEEEeCCCcc
Confidence 89999999999999999998754 3333333 8899988888888 78999999999983
Q ss_pred c---------ccccccccccceEEEEecCCCcc
Q psy15088 482 V---------TLLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 482 ~---------~~~l~~~~~ad~~v~vida~~g~ 505 (1291)
. ...+..+..||+++.|+|+...+
T Consensus 131 ~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 131 DGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL 163 (376)
T ss_dssp CC-----CHHHHHHHHHHHCSEEEEEEETTSHH
T ss_pred CCchhhhHHHHHHHHHHHhcCccccccccCccH
Confidence 1 12455667889999999998653
No 153
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.10 E-value=1.8e-06 Score=93.13 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=56.2
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
....+|+|+|.+|+|||||+++|++..-... .....|.+.... .+....+....+.++||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~----~~~~~~~~~~~~~l~Dt 68 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKN----------------YNATVGAVNHPV----TFLDDQGNVIKFNVWDT 68 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCE----------------EETTTTEEEEEE----EEEBTTSCEEEEEEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceeeEEE----EEEeCCCcEEEEEEEec
Confidence 3456999999999999999999985421100 000112222111 11111223478999999
Q ss_pred CCcccccccc--cccccceEEEEecCCCccchhh
Q psy15088 478 PASPVTLLLP--DVKGKNYLMNIFDTPGMWDIHV 509 (1291)
Q Consensus 478 pGh~~~~~l~--~~~~ad~~v~vida~~g~~~qt 509 (1291)
||+..+..+. ....+|++++|+|+..+.+.+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 102 (218)
T 4djt_A 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQN 102 (218)
T ss_dssp CSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred CCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHH
Confidence 9997654332 2446899999999988754333
No 154
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.10 E-value=5.5e-06 Score=86.85 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=55.4
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc------cCCCCeE
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD------VKGKNYL 471 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~------~~~~~~~ 471 (1291)
++..+|+++|++++|||||+++|+....... ..+ . .|.+... ...+.+.. ..+....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~----t-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK-FIT----T-----------VGIDFRE-KRVVYRANGPDGAVGRGQRIH 71 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCC----C-----------CSEEEEE-EEEEECTTSCCCSSCCCEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC-ccc----c-----------cceeeee-EEEEEecCCcccccccCcEEE
Confidence 4456999999999999999999986532100 000 0 0111100 00111100 0012578
Q ss_pred EEEEeCCCccccc--ccccccccceEEEEecCCCccc
Q psy15088 472 MNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMWD 506 (1291)
Q Consensus 472 ~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~~ 506 (1291)
+.++||||+..+. ....+..+|++++|+|+...-+
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 108 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS 108 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH
Confidence 9999999997554 2334557899999999987643
No 155
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.10 E-value=4.9e-06 Score=86.07 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=55.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|+.++|||||+++|++...... ....++++.....+.+ .+....+.++|||
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~Dt~ 71 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNT------------------YQATIGIDFLSKTMYL---EDRTVRLQLWDTA 71 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSS------------------CCCCCSEEEEEEEEEE---TTEEEEEEEEEEC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC------------------CCCceeeEEEEEEEEE---CCeEEEEEEEECC
Confidence 345899999999999999999986532110 0112222322222323 2245789999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ ..+..+|++++|+|+...
T Consensus 72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 99 (179)
T 2y8e_A 72 GQERFRSLIPSYIRDSTVAVVVYDITNT 99 (179)
T ss_dssp CSGGGGGGSHHHHHTCSEEEEEEETTCH
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 99755432 234578999999998765
No 156
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.10 E-value=3.6e-06 Score=88.17 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=57.0
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
.|....+|+++|.+|+|||||+++|.+..-... ....|.+++ .+.+ ++..+.++
T Consensus 12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----------------~~t~g~~~~----~~~~-----~~~~l~i~ 65 (181)
T 1fzq_A 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-----------------TPTQGFNIK----SVQS-----QGFKLNVW 65 (181)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----------------EEETTEEEE----EEEE-----TTEEEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----------------cCcCCeEEE----EEEE-----CCEEEEEE
Confidence 345567999999999999999999975521100 011143322 2333 57899999
Q ss_pred eCCCccccccc--ccccccceEEEEecCCCc
Q psy15088 476 DTPASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 476 DTpGh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
||||+..++.+ .....+|++++|+|+...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (181)
T 1fzq_A 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADR 96 (181)
T ss_dssp ECSSCGGGHHHHHHHHTTCSEEEEEEETTCG
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence 99999765432 234578999999998865
No 157
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.09 E-value=2.7e-06 Score=88.71 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=39.6
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+...+|+++|++++|||||+++|....-. . +...+++++.....+.+ .+....+.|+||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-~-----------------~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt 64 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN-S-----------------TFISTIGIDFKIRTIEL---DGKRIKLQIWDT 64 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEE---TTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-C-----------------CCCCcccceeEEEEEEE---CCEEEEEEEEcC
Confidence 34569999999999999999999854211 0 00112232222222333 224588999999
Q ss_pred CCcccccc--cccccccceEEEEecCCCc
Q psy15088 478 PASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 478 pGh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
||+..+.. ......+|++++|+|+...
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (183)
T 2fu5_C 65 AGQERFRTITTAYYRGAMGIMLVYDITNE 93 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCH
T ss_pred CCChhhhhhHHHHHhcCCEEEEEEECcCH
Confidence 99975542 2345578999999999875
No 158
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=4e-06 Score=88.20 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+....... .....|++.....+.+. +....+.|+||||
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G 73 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPE----------------LAATIGVDFKVKTISVD-----GNKAKLAIWDTAG 73 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCCSEEEEEEEEEET-----TEEEEEEEEEECS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCcc----------------CCCccceEEEEEEEEEC-----CeEEEEEEEeCCC
Confidence 45999999999999999999986532100 00111333333333332 2568899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCcc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
+..+..+ ..+..+|++++|+|+...-
T Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (195)
T 1x3s_A 74 QERFRTLTPSYYRGAQGVILVYDVTRRD 101 (195)
T ss_dssp SGGGCCSHHHHHTTCCEEEEEEETTCHH
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHH
Confidence 9755432 3345789999999998763
No 159
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.09 E-value=2.7e-06 Score=88.74 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=52.0
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
.+..+|+++|++++|||||+++|+....... ..|+......+.+ ++..+.++||
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------------------~~t~~~~~~~~~~-----~~~~~~i~Dt 69 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTT---------------------KPTIGFNVETLSY-----KNLKLNVWDL 69 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE---------------------CSSTTCCEEEEEE-----TTEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCcc---------------------CCcCccceEEEEE-----CCEEEEEEEC
Confidence 4456999999999999999999974421100 1111111122334 5789999999
Q ss_pred CCcccccc--cccccccceEEEEecCCCc
Q psy15088 478 PASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 478 pGh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
||+..+.. ...+..+|++++|+|+...
T Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 98 (183)
T 1moz_A 70 GGQTSIRPYWRCYYADTAAVIFVVDSTDK 98 (183)
T ss_dssp C----CCTTGGGTTTTEEEEEEEEETTCT
T ss_pred CCCHhHHHHHHHHhccCCEEEEEEECCCH
Confidence 99975442 2345578999999998765
No 160
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.09 E-value=5.7e-06 Score=87.24 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=55.2
Q ss_pred CceeEEecCCCc----------cccHHHHHHHhhhc---CcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGH----------VNFSDEVTAAMRLC---DGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~----------~~~~~~~~~a~~~~---D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+.++.++||||+ ..|...+...++.+ |++++|+|+..+....+..++++++..++|+++|+||+|..
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 346889999994 33443344445555 99999999999999999989999999999999999999986
Q ss_pred c
Q psy15088 281 M 281 (1291)
Q Consensus 281 ~ 281 (1291)
.
T Consensus 148 ~ 148 (195)
T 1svi_A 148 P 148 (195)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.09 E-value=7.2e-06 Score=85.43 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=62.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++|+|||||+++|+...- .... ..++.+.....+.+ .+....+.++||||+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~--~~~~-----------------~~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~ 63 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF--PGEY-----------------IPTVFDNYSANVMV---DGKPVNLGLWDTAGQ 63 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CSSC-----------------CCCSCCEEEEEEEE---TTEEEEEEEECCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CCCc-----------------CCcccceeEEEEEE---CCEEEEEEEEECCCC
Confidence 3899999999999999999985431 1000 01111111111111 225677889999999
Q ss_pred cccccc--ccccccceEEEEecCCCccchhhH--hhHHHHHhh--cCccchhhhhh
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGMWDIHVR--KFSKKAAHA--SAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g~~~qt~--~~~~~~~~~--~~~~~fv~fil 530 (1291)
..+..+ .....+|++++|+|+...-+-+.. .+....... ++|.++ +.|
T Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil--v~n 117 (186)
T 1mh1_A 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGT 117 (186)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEE--EEE
T ss_pred HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEE--EeE
Confidence 765533 345578999999999876332222 344443332 555543 445
No 162
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.09 E-value=5.3e-06 Score=88.81 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=55.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|++..-.. . ....++++.....+.+ .+....+.|+||||
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~-----------------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNP-S-----------------FITTIGIDFKIKTVDI---NGKKVKLQLWDTAG 78 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCC-S-----------------SSCCCSCCEEEEEEEE---TTEEEEEEEECCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-c-----------------cCCcccceEEEEEEEE---CCEEEEEEEEeCCC
Confidence 4599999999999999999998653110 0 0112222222222333 12347899999999
Q ss_pred cccccc--cccccccceEEEEecCCCc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
+..+.. ...+..+|++++|+|+...
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDE 105 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCH
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 976553 2345578999999998875
No 163
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.08 E-value=4.5e-06 Score=85.55 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=54.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|++..-.. . ....++.+.....+.+ .+....+.++||||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~-----------------~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G 61 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-S-----------------FITTIGIDFKIKTVDI---NGKKVKLQIWDTAG 61 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------------CCEEEEEEES---SSCEEEEEEECCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-C-----------------CCCccceeEEEEEEEE---CCEEEEEEEEeCCC
Confidence 3589999999999999999998653210 0 0112222222222223 23467899999999
Q ss_pred cccccc--cccccccceEEEEecCCCcc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
+..+.. ......+|++++|+|+...-
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 89 (170)
T 1g16_A 62 QERFRTITTAYYRGAMGIILVYDITDER 89 (170)
T ss_dssp GGGTSCCCHHHHTTEEEEEEEEETTCHH
T ss_pred ChhhhhhHHHHhccCCEEEEEEECCCHH
Confidence 975543 23345789999999988653
No 164
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.08 E-value=3.7e-06 Score=90.35 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=52.4
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
.+..+|+++|+.++|||||+++|+...... .. ..++.+. ..+.+. ...+..+.++||
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~--~~-----------------~~~~~~~--~~~~~~--~~~~~~~~i~Dt 61 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD--TQ-----------------TSITDSS--AIYKVN--NNRGNSLTLIDL 61 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC--BC-----------------CCCSCEE--EEEECS--STTCCEEEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc--cc-----------------CCcceee--EEEEec--CCCccEEEEEEC
Confidence 345699999999999999999998664110 00 0111111 112331 112688999999
Q ss_pred CCcccccc-cc--cccccceEEEEecCCC
Q psy15088 478 PASPVTLL-LP--DVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 478 pGh~~~~~-l~--~~~~ad~~v~vida~~ 503 (1291)
||+..+.. +. ....+|++|+|+|+..
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 62 PGHESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp CCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred CCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 99975543 21 2456789999999876
No 165
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.07 E-value=5.1e-06 Score=85.70 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=49.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++++|||||+++|.+........ ..|.+.....+. + .+....+.++||||+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~--~---~~~~~~~~~~D~~g~ 62 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHE-----------------QLGEDVYERTLT--V---DGEDTTLVVVDTWEA 62 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CC-----------------CSSSSEEEEEEE--E---TTEEEEEEEECCC--
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccC-----------------ccccceeEEEEE--E---CCEEEEEEEEecCCC
Confidence 489999999999999999998654322111 124443333222 2 124568899999999
Q ss_pred cc--ccccc--cccccceEEEEecCCCc
Q psy15088 481 PV--TLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~--~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.. +..+. ....+|++++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (175)
T 2nzj_A 63 EKLDKSWSQESCLQGGSAYVIVYSIADR 90 (175)
T ss_dssp -----CHHHHHTTTSCSEEEEEEETTCH
T ss_pred CccchhhhHHhhcccCCEEEEEEECCCH
Confidence 65 33222 23457899999998764
No 166
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.07 E-value=6.2e-06 Score=84.31 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=54.1
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++++|||||+++|+...-.. ... ..++.+.....+.+ .+....+.++|||
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~-----------------~t~~~~~~~~~~~~---~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYK-----------------KTIGVDFLERQIQV---NDEDVRLMLWDTA 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSS-----------------CCCSSSEEEEEEEE---TTEEEEEEEECCT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCC-----------------CceEEEEEEEEEEE---CCEEEEEEEEcCC
Confidence 34599999999999999999998653110 000 01111111112222 1246789999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++++|+|+...
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQACVLVFSTTDR 90 (168)
T ss_dssp TGGGTTCCCHHHHTTCCEEEEEEETTCH
T ss_pred CcHhHHHHHHHHhcCCCEEEEEEECcCH
Confidence 99755432 334578999999998875
No 167
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.07 E-value=4.2e-06 Score=88.11 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=53.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++++|||||+++|+...-... .. ...|.+. ..+.+ ++..+.|+||||+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~---------------~t~~~~~----~~~~~-----~~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNED-MI---------------PTVGFNM----RKITK-----GNVTIKLWDIGGQ 77 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS-CC---------------CCCSEEE----EEEEE-----TTEEEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCc-cC---------------CCCceeE----EEEEe-----CCEEEEEEECCCC
Confidence 4999999999999999999986532100 00 0012222 12333 6899999999999
Q ss_pred cccccc--ccccccceEEEEecCCCc
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
..+..+ ..+..+|++++|+|+...
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~D~~~~ 103 (188)
T 1zd9_A 78 PRFRSMWERYCRGVSAIVYMVDAADQ 103 (188)
T ss_dssp HHHHTTHHHHHTTCSEEEEEEETTCG
T ss_pred HhHHHHHHHHHccCCEEEEEEECCCH
Confidence 654422 234578999999998764
No 168
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.07 E-value=6e-06 Score=87.58 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=58.3
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|..++|||||++++.+...... ..|.+.....+.+.+ ..++...+.++|||
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~l~i~Dt~ 77 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNE-------------------TLFLESTNKIYKDDI--SNSSFVNFQIWDFP 77 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGG-------------------GGGCCCCCSCEEEEE--CCTTSCCEEEEECC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcc-------------------eeeeccccceeeeec--cCCCeeEEEEEECC
Confidence 345999999999999999998876432110 002111111111111 01366889999999
Q ss_pred Cccccccc-----ccccccceEEEEecCCCccchhhHhh
Q psy15088 479 ASPVTLLL-----PDVKGKNYLMNIFDTPGMWDIHVRKF 512 (1291)
Q Consensus 479 Gh~~~~~l-----~~~~~ad~~v~vida~~g~~~qt~~~ 512 (1291)
|+..+..+ .....+|++|+|+|+...+......+
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 116 (196)
T 3llu_A 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRL 116 (196)
T ss_dssp SSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHH
T ss_pred CCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHH
Confidence 99765433 34557899999999988743333333
No 169
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.05 E-value=5.4e-06 Score=88.28 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=53.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|.+++|||||+++|+......... . ..|.+. ..... ..+..+.+.|+|||
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~---------------t~~~~~-~~~~~-----~~~~~~~~~l~Dt~ 80 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-P---------------TVENTY-SKIVT-----LGKDEFHLHLVDTA 80 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-C---------------CSEEEE-EEEEC---------CEEEEEEEEC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-C---------------ccceEE-EEEEE-----ECCEEEEEEEEECC
Confidence 34699999999999999999999654221000 0 001111 11111 12367889999999
Q ss_pred Ccccccc--cccccccceEEEEecCCCc
Q psy15088 479 ASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
|+..+.. ...+..+|++++|+|+...
T Consensus 81 G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 108 (201)
T 3oes_A 81 GQDEYSILPYSFIIGVHGYVLVYSVTSL 108 (201)
T ss_dssp CCCTTCCCCGGGTTTCCEEEEEEETTCH
T ss_pred CccchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 9976543 3345578999999998865
No 170
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.05 E-value=6.1e-06 Score=86.82 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=56.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH---------cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ---------EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~---------~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+.+|.......++.+|++|||+|+..+...++.+.++.+.+ .++|+++|+||+|+..
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp EEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred eEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 478999999999999888899999999999999998877777666554433 5889999999999864
No 171
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.03 E-value=8.2e-06 Score=88.46 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=55.1
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+...+|+|+|++++|||||+++|+........ ...++.+.....+.+ .+....+.|+||
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~---~~~~~~~~i~Dt 69 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS------------------KSTIGVEFATRTLEI---EGKRIKAQIWDT 69 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------------CCSEEEEEEEE---TTEEEEEEEECC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCcccceeEEEEEEE---CCEEEEEEEEEC
Confidence 44569999999999999999999876422110 001111111112222 124478999999
Q ss_pred CCcccccc--cccccccceEEEEecCCCcc
Q psy15088 478 PASPVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 478 pGh~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
||+..+.. ......+|++|+|+|+...-
T Consensus 70 ~G~~~~~~~~~~~~~~~d~vilV~D~~~~~ 99 (223)
T 3cpj_B 70 AGQERYRAITSAYYRGAVGALIVYDISKSS 99 (223)
T ss_dssp TTTTTTTCCCGGGTTTCCEEEEEEC-CCHH
T ss_pred CCccchhhhHHHHhccCCEEEEEEeCCCHH
Confidence 99976543 33455789999999988763
No 172
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=8.3e-06 Score=87.29 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=61.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|..++|||||+++|++....... ..+. |.+.. ..+.+ .+....+.|+||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~t~----------~~~~~---~~~~~---~~~~~~~~i~Dt~G 82 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY------VPTV----------FENYV---ADIEV---DGKQVELALWDTAG 82 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEEE---EEEEE---TTEEEEEEEEECTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC------CCcc----------cceEE---EEEEE---CCEEEEEEEEECCC
Confidence 359999999999999999999875421100 0000 11111 11112 22457899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc--cchhhHhhHHHHHhh--cCccch
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM--WDIHVRKFSKKAAHA--SAQRSF 525 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g--~~~qt~~~~~~~~~~--~~~~~f 525 (1291)
+..+..+ .....+|++++|+|+... +......+....... ++|.++
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 134 (207)
T 2fv8_A 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134 (207)
T ss_dssp CTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred cHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9755432 345578999999998865 333333444444333 455543
No 173
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.03 E-value=9.8e-06 Score=86.44 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=56.5
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
++..+|+++|++++|||||+++|++..-... ....++.+.....+.+ .+....+.|+||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt 64 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND------------------YISTIGVDFKIKTVEL---DGKTVKLQIWDT 64 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT------------------CCCSSCCCEEEEEEEE---TTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCcccceeEEEEEEE---CCEEEEEEEEeC
Confidence 4556999999999999999999986542110 0012222222122222 224568999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCc
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
||+..+. ....+..+|++++|+|+...
T Consensus 65 ~G~~~~~~~~~~~~~~~d~vilv~d~~~~ 93 (206)
T 2bcg_Y 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQ 93 (206)
T ss_dssp TTTTTTTCCCGGGGTTCSEEEEEEETTCH
T ss_pred CChHHHHHHHHHhccCCCEEEEEEECcCH
Confidence 9997654 33345678999999998765
No 174
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=1.1e-05 Score=85.00 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=54.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|+.++|||||+++|+...-. .... .++.+.....+.+ .+....+.++|||
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~i~D~~ 74 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYV-----------------PTVFDHYAVSVTV---GGKQYLLGLYDTA 74 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCC-----------------CSSCCCEEEEEES---SSCEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCC-----------------CcccceeEEEEEE---CCEEEEEEEEECC
Confidence 4469999999999999999999865311 0000 1111111111222 2255789999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++++|+|+...
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (194)
T 2atx_A 75 GQEDYDRLRPLSYPMTDVFLICFSVVNP 102 (194)
T ss_dssp CSSSSTTTGGGGCTTCSEEEEEEETTCH
T ss_pred CCcchhHHHHHhcCCCCEEEEEEECCCH
Confidence 99765533 335578999999998875
No 175
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.02 E-value=7.6e-06 Score=94.85 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHhhhcCcEEEEEECCCCCchhHHHHHHHH---HHcCCcEEEEEEccCccc
Q psy15088 233 TAAMRLCDGVVLFVDAAEGVMLNTERLLKHA---VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 233 ~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l---~~~~~~~ilvvNKiD~~~ 281 (1291)
...+..+|.+++| |+.. ..+....+-+++ +..++|++||+||+|+..
T Consensus 125 ~~i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EEEEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HHHHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 3457889998865 6665 444444555554 567999999999999874
No 176
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.02 E-value=1.1e-05 Score=85.97 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=62.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|.+++|||||+++|......... . .+. |.+.. ..+.+ .+....+.++||||+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~-----~t~----------~~~~~---~~~~~---~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-V-----PTV----------FENYI---ADIEV---DGKQVELALWDTAGQ 83 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSC-C-----CSS----------CCCCE---EEEEE---TTEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCccc-C-----Ccc----------cceEE---EEEEE---CCEEEEEEEEECCCc
Confidence 49999999999999999999865421100 0 000 11110 11112 224578999999999
Q ss_pred cccccc--ccccccceEEEEecCCCc--cchhhHhhHHHHHhh--cCccch
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGM--WDIHVRKFSKKAAHA--SAQRSF 525 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g--~~~qt~~~~~~~~~~--~~~~~f 525 (1291)
..+..+ ..+..+|++++|+|+... +......+....... ++|.++
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 134 (201)
T 2gco_A 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134 (201)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 765433 245578999999998864 333333444444433 455543
No 177
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.02 E-value=6e-06 Score=94.49 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=61.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|.+|+|||||+++|+......... ..|.|++.....+.+. ++..+.++||||+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~-----------------~~~~Ti~~~~~~~~~~----~~~~l~i~Dt~G~ 62 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTR-----------------RLGATIDVEHSHLRFL----GNMTLNLWDCGGQ 62 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGG-----------------GCCCCCSEEEEEEEET----TTEEEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccc-----------------CcCCccceEEEEEEeC----CceEEEEEECCCc
Confidence 389999999999999999998764332211 2266766655554442 4789999999999
Q ss_pred ccc-----cc--cccccccceEEEEecCCCccchhh
Q psy15088 481 PVT-----LL--LPDVKGKNYLMNIFDTPGMWDIHV 509 (1291)
Q Consensus 481 ~~~-----~~--l~~~~~ad~~v~vida~~g~~~qt 509 (1291)
..+ .. -.....+|++|+|+|+...-+.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~ 98 (307)
T 3r7w_A 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKD 98 (307)
T ss_dssp HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHH
T ss_pred HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHH
Confidence 654 22 222346899999999987643333
No 178
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.01 E-value=7.1e-06 Score=84.95 Aligned_cols=86 Identities=15% Similarity=0.280 Sum_probs=54.6
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|....-.. +....++++.....+.+. .+....+.++||||
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~--~~~~~~~~~~Dt~G 65 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGK------------------QYKQTIGLDFFLRRITLP--GNLNVTLQIWDIGG 65 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTH------------------HHHHTTTSSEEEEEEEET--TTEEEEEEEEECTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCC------------------CCCCceeEEEEEEEEEeC--CCCEEEEEEEECCC
Confidence 3489999999999999999998653110 000111122222223331 01248899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCcc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
+..+..+ ..+..+|++++|+|+...-
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 93 (178)
T 2hxs_A 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQ 93 (178)
T ss_dssp CCTTCTTHHHHHTTCSEEEEEEETTCHH
T ss_pred CccccchhhHHHhhCCEEEEEEECCCHH
Confidence 9755422 2345789999999998753
No 179
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.01 E-value=1.1e-05 Score=86.10 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=57.4
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIF 475 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~li 475 (1291)
..++..+|+++|.+++|||||+++|+...-.. .. ...++++.....+.+ .+....+.|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~---------------~~t~~~~~~~~~~~~---~~~~~~l~l~ 80 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP---GQ---------------GATIGVDFMIKTVEI---NGEKVKLQIW 80 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT---TC---------------CCCCSEEEEEEEEEE---TTEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCC---CC---------------CCccceeEEEEEEEE---CCEEEEEEEE
Confidence 34556799999999999999999998653110 00 001222222222333 2245689999
Q ss_pred eCCCccccc--ccccccccceEEEEecCCCc
Q psy15088 476 DTPASPVTL--LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 476 DTpGh~~~~--~l~~~~~ad~~v~vida~~g 504 (1291)
||||+..+. ....+..+|++++|+|+...
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 111 (201)
T 2ew1_A 81 DTAGQERFRSITQSYYRSANALILTYDITCE 111 (201)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 999997654 33345678999999998865
No 180
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.01 E-value=8.7e-06 Score=84.87 Aligned_cols=83 Identities=8% Similarity=0.081 Sum_probs=52.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+...-.. ... .+ .+.+. ...+.. .+....+.++||||
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~----~t----------~~~~~---~~~~~~---~~~~~~l~i~Dt~G 75 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVD--DYD----PT----------IEDSY---LKHTEI---DNQWAILDVLDTAG 75 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS--CCC----TT----------CCEEE---EEEEEE---TTEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--CCC----CC----------cccee---EEEEEe---CCcEEEEEEEECCC
Confidence 4599999999999999999998552110 000 00 01111 111111 22456678899999
Q ss_pred cccccccc--cccccceEEEEecCCCc
Q psy15088 480 SPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
+..+..+. .+..+|++++|+|+...
T Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 76 QEEFSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp CGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 97655332 34468999999999876
No 181
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.00 E-value=8e-06 Score=86.10 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=55.1
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.++|||||+++|+........ ....|++.....+ .+ .++...+.|+||||
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~--~~---~~~~~~~~i~Dt~G 79 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMV--NI---DGKQIKLQIWDTAG 79 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEE--EE---TTEEEEEEEECCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEE--EE---CCEEEEEEEEECCC
Confidence 359999999999999999999865422110 0011222222222 22 12457899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCcc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
+..+..+ .....+|++++|+|+...-
T Consensus 80 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 107 (191)
T 2a5j_A 80 QESFRSITRSYYRGAAGALLVYDITRRE 107 (191)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHH
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHH
Confidence 9765532 3445789999999998753
No 182
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.00 E-value=4.8e-06 Score=99.11 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=58.0
Q ss_pred eeEEecCCCccccH-------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFS-------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~-------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++++||||+.+|. ..+...++.+|++|+|+|+ +...++..+++++++.++|+++|+||+|+..
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 78999999998874 3467788999999999999 8999999999999999999999999999875
No 183
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.00 E-value=2.5e-06 Score=90.74 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=55.5
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeC
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDT 477 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDT 477 (1291)
+...+|+++|+.++|||||+++|+...-.. +...+++.+.....+.+ .+..+.+.|+||
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt 89 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE------------------SYISTIGVDFKIRTIEL---DGKTIKLQIWDT 89 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC------------------HHHHHHCCSEEEEEEEE---TTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC------------------CcCCcccceEEEEEEEE---CCEEEEEEEEEC
Confidence 456799999999999999999987542110 11112333333233333 124478999999
Q ss_pred CCccccc--ccccccccceEEEEecCCCcc
Q psy15088 478 PASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 478 pGh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
||+..+. ....+..+|++++|+|+...-
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 119 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQE 119 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSH
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHH
Confidence 9997554 333456789999999998763
No 184
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.00 E-value=1e-05 Score=84.58 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=50.7
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-+|+++|++|+|||||+++|++.... .... +++.+.....+.+ .+....+.++||||+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~i~Dt~G~ 62 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFV--DEYD-----------------PTIEDSYRKQVVI---DGETCLLDILDTAGQ 62 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC--CCCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--CCCC-----------------CCchheEEEEEEE---CCcEEEEEEEECCCc
Confidence 38999999999999999999865421 1100 1221111111222 224567888999999
Q ss_pred ccccccc--cccccceEEEEecCCCc
Q psy15088 481 PVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
..+..+. ....+|++++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (189)
T 4dsu_A 63 EEYSAMRDQYMRTGEGFLCVFAINNT 88 (189)
T ss_dssp ---CTTHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 7554332 24467899999998865
No 185
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.00 E-value=1.3e-05 Score=85.76 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=64.9
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+|+|||||+++|+...-. .. ..+++.+.....+.+ .+....+.++||||
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~-----------------~~~t~~~~~~~~~~~---~~~~~~l~i~Dt~G 87 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP--GE-----------------YIPTVFDNYSANVMV---DGKPVNLGLWDTAG 87 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC--C------------------CCCCSEEEEEEEEEC---C-CEEEEEEEEECC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCC--CC-----------------cCCeecceeEEEEEE---CCEEEEEEEEECCC
Confidence 459999999999999999999855321 00 012222221112222 23567778999999
Q ss_pred ccccccc--ccccccceEEEEecCCCccchhhH--hhHHHHHhh--cCccchhhhhh
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVR--KFSKKAAHA--SAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g~~~qt~--~~~~~~~~~--~~~~~fv~fil 530 (1291)
+..+..+ ..+..+|++++|+|+...-+-+.. .+....... ++|.++ +.|
T Consensus 88 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil--v~n 142 (204)
T 4gzl_A 88 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL--VGT 142 (204)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEE--EEE
T ss_pred chhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE--EEe
Confidence 9765433 345678999999999876433332 344444433 555554 455
No 186
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.99 E-value=6e-06 Score=87.39 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=50.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+... .. +. ....|. ....+.+ ++..+.++||||
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~--~~------------~~---~~t~~~----~~~~~~~-----~~~~~~i~Dt~G 82 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGE--IV------------TT---IPTIGF----NVETVEY-----KNICFTVWDVGG 82 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSC--CE------------EE---EEETTE----EEEEEEE-----TTEEEEEEECC-
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCC--cc------------cc---CCcCce----eEEEEEE-----CCEEEEEEECCC
Confidence 3589999999999999999997432 11 00 111122 1222333 678999999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 83 ~~~~~~~~~~~~~~~d~iilv~D~~~~ 109 (192)
T 2b6h_A 83 QDKIRPLWRHYFQNTQGLIFVVDSNDR 109 (192)
T ss_dssp ----CTTHHHHHHTCCEEEEEEETTCG
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCH
Confidence 9765533 245578999999999865
No 187
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.99 E-value=1.3e-05 Score=84.72 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=54.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|.+|+|||||+++|+...-. .... .+. |.+.. ..+.+ .+..+.+.++|||
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~----~t~----------~~~~~---~~~~~---~~~~~~~~i~Dt~ 79 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYV----PTV----------FENFS---HVMKY---KNEEFILHLWDTA 79 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCC----CCS----------EEEEE---EEEEE---TTEEEEEEEEEEC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccC----Cee----------eeeeE---EEEEE---CCEEEEEEEEECC
Confidence 3459999999999999999999876421 0000 000 11111 11111 2255678999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCcc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
|+..+..+ .....+|++++|+|+...-
T Consensus 80 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 108 (194)
T 3reg_A 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRT 108 (194)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred CcHHHHHHhHhhccCCcEEEEEEECCCHH
Confidence 99765533 3355789999999998763
No 188
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.99 E-value=6.9e-06 Score=86.36 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=54.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|+.++|||||+++|+...-.... ....|++.... .+.+ .+....+.|+|||
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~--~~~~---~~~~~~~~l~Dt~ 77 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRER--AVDI---DGERIKIQLWDTA 77 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEE--EEEE---TTEEEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEE--EEEE---CCEEEEEEEEECC
Confidence 3459999999999999999999865321100 00112222222 2222 1245789999999
Q ss_pred Cccccc-c--cccccccceEEEEecCCCc
Q psy15088 479 ASPVTL-L--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~-~--l~~~~~ad~~v~vida~~g 504 (1291)
|+..+. . ...+..+|++++|+|+...
T Consensus 78 G~~~~~~~~~~~~~~~~d~iilv~D~~~~ 106 (189)
T 1z06_A 78 GQERFRKSMVQHYYRNVHAVVFVYDMTNM 106 (189)
T ss_dssp CSHHHHTTTHHHHHTTCCEEEEEEETTCH
T ss_pred CchhhhhhhhHHHhcCCCEEEEEEECcCH
Confidence 996543 2 2234578999999999875
No 189
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.98 E-value=9.2e-06 Score=82.92 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=52.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++++|||||+++|+...-.. ... .+. |.+. ...+. ..+....+.++||||+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~--~~~----~t~----------~~~~---~~~~~---~~~~~~~~~l~D~~G~ 61 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYD----PTI----------EDSY---RKQVE---VDCQQCMLEILDTAGT 61 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC--SCC----CCS----------EEEE---EEEEE---SSSCEEEEEEEEECSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCC----CCc----------cceE---EEEEE---ECCEEEEEEEEECCCh
Confidence 389999999999999999998643110 000 000 1111 01111 1236788999999999
Q ss_pred cccccc--ccccccceEEEEecCCCc
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
..+..+ .....+|++++|+|+...
T Consensus 62 ~~~~~~~~~~~~~~d~~i~v~d~~~~ 87 (167)
T 1c1y_A 62 EQFTAMRDLYMKNGQGFALVYSITAQ 87 (167)
T ss_dssp CSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCH
Confidence 755432 233467899999998865
No 190
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.98 E-value=8.1e-06 Score=90.85 Aligned_cols=67 Identities=7% Similarity=-0.080 Sum_probs=55.5
Q ss_pred CceeEEecCCCccccH-----------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc-----CCcEEEEEE-c
Q psy15088 214 TRNNNKCLPPGHVNFS-----------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE-----KMAITLCVN-K 276 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~-----------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~-----~~~~ilvvN-K 276 (1291)
++.++|+||||+.++. ..+..+++.+|++|+|+|+.. +..++..+++++.+. ++|+++|+| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 5689999999998762 223447788999999999985 888999999988876 789999988 9
Q ss_pred cCccc
Q psy15088 277 IDRLM 281 (1291)
Q Consensus 277 iD~~~ 281 (1291)
+|+..
T Consensus 149 ~Dl~~ 153 (260)
T 2xtp_A 149 EDLNG 153 (260)
T ss_dssp GGGTT
T ss_pred cccCC
Confidence 99863
No 191
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.98 E-value=7.9e-06 Score=83.28 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|++++|||||+++|+...-. .... +++.......+.+ .++.+.+.++||||+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~l~D~~G~ 62 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFV--EDYE-----------------PTKADSYRKKVVL---DGEEVQIDILDTAGQ 62 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--SCCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccC--CCCC-----------------CCcceEEEEEEEE---CCEEEEEEEEECCCc
Confidence 48999999999999999999865411 0000 1111111111222 224578999999999
Q ss_pred ccccc--cccccccceEEEEecCCCc
Q psy15088 481 PVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
..+.. ......+|++++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 63 EDYAAIRDNYFRSGEGFLCVFSITEM 88 (168)
T ss_dssp --CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred chhHHHHHHHhhcCCEEEEEEECCCH
Confidence 65432 2234467899999998865
No 192
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.97 E-value=1.8e-05 Score=81.17 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=51.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|++..-.. ... ..++.+.....+.+ .+....+.++||||
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~-----------------~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G 64 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFND-KHI-----------------TTLGASFLTKKLNI---GGKRVNLAIWDTAG 64 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCS-SCC-----------------CCCSCEEEEEEEES---SSCEEEEEEEECCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCc-CCC-----------------CccceEEEEEEEEE---CCEEEEEEEEECCC
Confidence 3589999999999999999998653210 000 01111111112222 23567889999999
Q ss_pred cccccc--cccccccceEEEEecCCCc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
+..+.. ......+|++++|+|+...
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1z08_A 65 QERFHALGPIYYRDSNGAILVYDITDE 91 (170)
T ss_dssp C-------CCSSTTCSEEEEEEETTCH
T ss_pred cHhhhhhHHHHhccCCEEEEEEECcCH
Confidence 975442 2334578999999998875
No 193
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.97 E-value=4.9e-06 Score=85.10 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=43.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++|+|||||+++|.+........ ..|.|... .+.+ .+....+.+.||||+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~-~~~~-----~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVEDGPEAE-----------------AAGHTYDR-SIVV-----DGEEASLMVYDIWEQD 60 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC---------------------------CEEEE-EEEE-----TTEEEEEEEEECC---
T ss_pred EEEEECCCCCCHHHHHHHHcCccccCCCC-----------------ccccceEE-EEEE-----CCEEEEEEEEECCCCc
Confidence 89999999999999999997543221111 11333321 1111 2356788999999997
Q ss_pred cccccc--cccccceEEEEecCCCc
Q psy15088 482 VTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
.+..+. ....+|++++|+|+...
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (166)
T 3q72_A 61 GGRWLPGHCMAMGDAYVIVYSVTDK 85 (166)
T ss_dssp ------------CCEEEEEEETTCH
T ss_pred cchhhhhhhhhhCCEEEEEEECCCH
Confidence 554322 34567899999998865
No 194
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.96 E-value=1e-05 Score=89.49 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=56.6
Q ss_pred CceeEEecCCCc--------cccHHHHHHHh----hhcCcEEEEEECCCCCchhHHHHHHHHHHc------CCcEEEEEE
Q psy15088 214 TRNNNKCLPPGH--------VNFSDEVTAAM----RLCDGVVLFVDAAEGVMLNTERLLKHAVQE------KMAITLCVN 275 (1291)
Q Consensus 214 ~~~~~liDtpG~--------~~~~~~~~~a~----~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~------~~~~ilvvN 275 (1291)
++.++++||||+ ..+..++..++ +.+|++|+|+|+.. ++..+..+++++++. ++|+|||.|
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 568999999998 45666676666 99999999999974 888888888888875 789999999
Q ss_pred ccCccc
Q psy15088 276 KIDRLM 281 (1291)
Q Consensus 276 KiD~~~ 281 (1291)
|+|...
T Consensus 148 K~Dl~~ 153 (247)
T 3lxw_A 148 KEDLAG 153 (247)
T ss_dssp GGGGTT
T ss_pred hHhcCC
Confidence 999864
No 195
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.96 E-value=8.9e-06 Score=84.74 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=53.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|+.++|||||+++|+...- ..... +++.......+.+ .+..+.+.|+|||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYE-----------------PTKADSYRKKVVL---DGEEVQIDILDTA 74 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCC-----------------CccceEEEEEEEE---CCEEEEEEEEECC
Confidence 346999999999999999999986531 11000 1111111111222 1245689999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++++|+|+...
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEM 102 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCH
Confidence 99754422 234567899999998864
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.96 E-value=6e-06 Score=101.85 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=70.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCC--cccCCccccccc-cccccccccccCceee------------------ecc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHP--GYRQPAEEKNLR-YTDTLFTEQERGVSIK------------------ASP 457 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~--i~~~~~~~~~~~-~~D~~~~E~erGiTi~------------------~~~ 457 (1291)
...+|+|+|++|+|||||+|+|++.... .+...+.....+ +......+...|.++- ...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3569999999999999999999987542 222211100000 0000000000111100 000
Q ss_pred ceecccccCCCC---eEEEEEeCCCccc-----------cc--ccccccccceEEEEecCCC-ccchhhHhhHHHHHhhc
Q psy15088 458 VTLLLPDVKGKN---YLMNIFDTPASPV-----------TL--LLPDVKGKNYLMNIFDTPG-MWDIHVRKFSKKAAHAS 520 (1291)
Q Consensus 458 ~~~~~~~~~~~~---~~~~liDTpGh~~-----------~~--~l~~~~~ad~~v~vida~~-g~~~qt~~~~~~~~~~~ 520 (1291)
++..+ .+ ..++||||||+.. +. +...+..+|++++|+|+.. ++..++..++......+
T Consensus 144 ~~~~~-----~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 218 (550)
T 2qpt_A 144 MCAQL-----PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE 218 (550)
T ss_dssp EEEEC-----CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred eEEec-----cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence 11111 11 4689999999853 11 2233557899999999987 57788888887776666
Q ss_pred Cccchhhhhh
Q psy15088 521 AQRSFVEFVL 530 (1291)
Q Consensus 521 ~~~~fv~fil 530 (1291)
.|.++ ++|
T Consensus 219 ~pvil--VlN 226 (550)
T 2qpt_A 219 DKIRV--VLN 226 (550)
T ss_dssp GGEEE--EEE
T ss_pred CCEEE--EEE
Confidence 66554 555
No 197
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=3.6e-06 Score=88.81 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=57.0
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+|+|+.++|||||+++|+...-.... ....|++.....+.+. +....+.|+|||
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~ 80 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAF----------------VSTVGIDFKVKTVYRH-----EKRVKLQIWDTA 80 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCE----------------EEEETTTEEEEEEEET-----TTTEEEEEECHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCccc----------------CCCeeeEEEEEEEEEC-----CEEEEEEEEeCC
Confidence 3459999999999999999999876421100 0111444443333333 267899999999
Q ss_pred Ccccccc--cccccccceEEEEecCCCc
Q psy15088 479 ASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
|+..+.. ...+..+|++++|+|+...
T Consensus 81 G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 81 GQERYRTITTAYYRGAMGFILMYDITNE 108 (191)
T ss_dssp HHHHCHHHHHHHHTTCCEEEEEEETTCH
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECcCH
Confidence 9965542 2234567999999998865
No 198
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=1.1e-05 Score=82.68 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=51.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|++++|||||+++|++..-... ..+ + .+.+... .+.+ .+....+.++||||+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~~-----t----------~~~~~~~-~~~~-----~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTFRES-YIP-----T----------VEDTYRQ-VISC-----DKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSS-CCC-----C----------SCEEEEE-EEEE-----TTEEEEEEEEECCSCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-CCC-----C----------ccccEEE-EEEE-----CCEEEEEEEEECCCch
Confidence 899999999999999999986431100 000 0 0111110 0111 1245789999999997
Q ss_pred cccc--cccccccceEEEEecCCCc
Q psy15088 482 VTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
.+.. ......+|++++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 63 QFPAMQRLSISKGHAFILVYSITSR 87 (172)
T ss_dssp SCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred hhHHHHHHhcccCCEEEEEEECcCH
Confidence 5442 2234567999999998865
No 199
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.95 E-value=7.3e-06 Score=87.25 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=52.9
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+|+|..++|||||+++|+....... ....++.+.....+.+ .+....+.|+|||
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~ 82 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD------------------SNHTIGVEFGSRVVNV---GGKTVKLQIWDTA 82 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEE---TTEEEEEEEECCT
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc------------------CCCcccceeEEEEEEE---CCeeeEEEEEcCC
Confidence 456999999999999999999986532110 0011121111112222 1245789999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCcc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g~ 505 (1291)
|+..+..+ ..+..+|++|+|+|+...-
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 111 (200)
T 2o52_A 83 GQERFRSVTRSYYRGAAGALLVYDITSRE 111 (200)
T ss_dssp THHHHSCCCHHHHTTCSEEEEEEETTCHH
T ss_pred CcHhHHHHHHHHhccCCEEEEEEECcCHH
Confidence 99654422 3355789999999988763
No 200
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.95 E-value=6e-06 Score=87.27 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=53.9
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|..++|||||+++|+....... ....++.+.....+.+ .+....+.++||||
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G 84 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEA------------------CKSTVGVDFKIKTVEL---RGKKIRLQIWDTAG 84 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------------------------CCTTEEEEEEEEEE---TTEEEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC------------------CCCccceeEEEEEEEE---CCeEEEEEEEeCCC
Confidence 35899999999999999999986532110 0011222222222222 12457899999999
Q ss_pred cccccc--cccccccceEEEEecCCCccc
Q psy15088 480 SPVTLL--LPDVKGKNYLMNIFDTPGMWD 506 (1291)
Q Consensus 480 h~~~~~--l~~~~~ad~~v~vida~~g~~ 506 (1291)
+..+.. ...+..+|++++|+|+....+
T Consensus 85 ~~~~~~~~~~~~~~~d~iilV~D~~~~~s 113 (192)
T 2il1_A 85 QERFNSITSAYYRSAKGIILVYDITKKET 113 (192)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTCHHH
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECcCHHH
Confidence 975542 233457899999999987643
No 201
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.95 E-value=9.5e-06 Score=94.92 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=56.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
++.|+|+|++|+|||||+++|.+... .+.. ..++|++.....+.+ .+..+.++||||
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-~~~~-----------------~~~~T~d~~~~~i~~-----~g~~v~l~DT~G 235 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDT-----------------KLFTTMSPKRYAIPI-----NNRKIMLVDTVG 235 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------------------------CCSCEEEEEE-----TTEEEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-cccC-----------------CcccccCCEEEEEEE-----CCEEEEEEeCCC
Confidence 55799999999999999999986542 1111 126677666556666 568899999999
Q ss_pred cc----------cccccccccccceEEEEecCCCc
Q psy15088 480 SP----------VTLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~----------~~~~l~~~~~ad~~v~vida~~g 504 (1291)
+. +..++..+..+|.+++|+|+...
T Consensus 236 ~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~ 270 (364)
T 2qtf_A 236 FIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFS 270 (364)
T ss_dssp BCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSC
T ss_pred chhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 72 11245556788999999998765
No 202
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.94 E-value=1.1e-06 Score=94.82 Aligned_cols=93 Identities=30% Similarity=0.524 Sum_probs=72.4
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcc--------------------------cCCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRG--------------------------AEGSG 669 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg--------------------------~~~~~ 669 (1291)
+|++||||++..|+..|...+... ...+.++++++|.+++.+|+.+|. ....+
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCcccc
Confidence 789999999987776665544321 123467899999999999999882 23456
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
|.+++++.+++|+..|...+.|+..+|..++.+..+++.+
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~ 199 (216)
T 3fb4_A 160 RIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQ 199 (216)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCC
Confidence 7889999999999999999999999888777666666543
No 203
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.94 E-value=1.4e-05 Score=83.12 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+...-. ... .+++.+.....+.+ .+....+.++||||
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~-----------------~~t~~~~~~~~~~~---~~~~~~~~i~Dt~G 65 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP--TDY-----------------VPTVFDNFSANVVV---NGATVNLGLWDTAG 65 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CBCCCC----------CEEECCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCC-----------------CCeeeeeEEEEEEE---CCEEEEEEEEECCC
Confidence 358999999999999999999865311 000 01111111111111 22456778999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (182)
T 3bwd_D 66 QEDYNRLRPLSYRGADVFILAFSLISK 92 (182)
T ss_dssp -CTTTTTGGGGGTTCSEEEEEEETTCH
T ss_pred ChhhhhhHHhhccCCCEEEEEEECCCH
Confidence 9765533 345578999999998765
No 204
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.93 E-value=5.6e-06 Score=105.03 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=41.6
Q ss_pred eEEEEEeCCCccc-----ccccccccccceEEEEecCCCccchhhHhhHH-HHHhhcCccchhhhhh
Q psy15088 470 YLMNIFDTPASPV-----TLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSK-KAAHASAQRSFVEFVL 530 (1291)
Q Consensus 470 ~~~~liDTpGh~~-----~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~-~~~~~~~~~~fv~fil 530 (1291)
..++|+||||+.. ..+...+..+|++|+|+|+..+++..+..++. .....+.|.+| ++|
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iii--VlN 238 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFF--LVN 238 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEE--EEE
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEE--EEE
Confidence 4699999999743 22444556789999999999888777776665 44445667544 444
No 205
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.91 E-value=2.7e-05 Score=83.38 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=53.2
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+...-. .... .+. |... ...+.+ .+....+.|+||||
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~----~t~----------~~~~---~~~~~~---~~~~~~~~i~Dt~G 66 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFP--TDYI----PTV----------FDNF---SANVAV---DGQIVNLGLWDTAG 66 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCC----CSS----------CCCE---EEEEEC---SSCEEEEEEECCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--ccCC----Ccc----------ceeE---EEEEEE---CCEEEEEEEEECCC
Confidence 358999999999999999999865311 0000 000 1111 111111 23567999999999
Q ss_pred cccccccc--cccccceEEEEecCCCc
Q psy15088 480 SPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
+..+..+. ....+|++++|+|+...
T Consensus 67 ~~~~~~~~~~~~~~~d~~ilv~d~~~~ 93 (212)
T 2j0v_A 67 QEDYSRLRPLSYRGADIFVLAFSLISK 93 (212)
T ss_dssp CCCCCC--CGGGTTCSEEEEEEETTCH
T ss_pred cHHHHHHHHhhccCCCEEEEEEECCCH
Confidence 97665333 35578999999998865
No 206
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.91 E-value=2.2e-05 Score=82.37 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=48.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+++|+...-. .... +++.......+.+ .+..+.+.++||||+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 79 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYD-----------------PTIEDSYRKQVVI---DGETCLLDILDTAGQ 79 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SCCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc--cccC-----------------CccceEEEEEEEE---CCEEEEEEEEECCCh
Confidence 38999999999999999999865311 0000 1111111111222 224577999999999
Q ss_pred ccccc--cccccccceEEEEecCCCcc
Q psy15088 481 PVTLL--LPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 481 ~~~~~--l~~~~~ad~~v~vida~~g~ 505 (1291)
..+.. ...+..+|++++|+|+...-
T Consensus 80 ~~~~~~~~~~~~~~d~~i~v~d~~~~~ 106 (190)
T 3con_A 80 EEYSAMRDQYMRTGEGFLCVFAINNSK 106 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHH
T ss_pred HHHHHHHHHhhCcCCEEEEEEECcCHH
Confidence 75432 23345779999999988753
No 207
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.91 E-value=2.1e-05 Score=83.39 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=52.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.++|||||+++|+... ..... .+++.+.....+.+ .+....+.++||||
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~-----------------~~t~~~~~~~~~~~---~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG--YPTEY-----------------IPTAFDNFSAVVSV---DGRPVRLQLCDTAG 77 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------------------------CCSSEEEEEEEEE---TTEEEEEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCC-----------------CCcccceeEEEEEE---CCEEEEEEEEECCC
Confidence 4599999999999999999998653 11000 01221111112222 12346788999999
Q ss_pred cccccccc--cccccceEEEEecCCCc
Q psy15088 480 SPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
+..+..+. ....+|++++|+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 78 QDEFDKLRPLCYTNTDIFLLCFSVVSP 104 (201)
T ss_dssp STTCSSSGGGGGTTCSEEEEEEETTCH
T ss_pred CHHHHHHhHhhcCCCcEEEEEEECCCH
Confidence 97655332 35578999999998865
No 208
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.91 E-value=2.6e-05 Score=81.57 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=54.1
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|.+++|||||+++|+....... ..+ +. |.+. ...+.+ .+....+.++|||
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~-----t~----------~~~~---~~~~~~---~~~~~~~~i~Dt~ 63 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVP-----TV----------FENY---TASFEI---DTQRIELSLWDTS 63 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCC-----CS----------EEEE---EEEEEC---SSCEEEEEEEEEC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCC-----cc----------ceeE---EEEEEE---CCEEEEEEEEECC
Confidence 345899999999999999999987532100 000 00 1110 011111 2356889999999
Q ss_pred Ccccccccc--cccccceEEEEecCCCc
Q psy15088 479 ASPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
|+..+..+. ....+|++++|+|+...
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (184)
T 1m7b_A 64 GSPYYDNVRPLSYPDSDAVLICFDISRP 91 (184)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred CChhhhhhHHhhcCCCcEEEEEEECCCH
Confidence 997655332 34578999999998865
No 209
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.90 E-value=1.2e-05 Score=92.08 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=56.6
Q ss_pred CceeEEecCCCccc-------------cHHHHHHHhhhcCcEEEEEEC-CCCCchhH-HHHHHHHHHcCCcEEEEEEccC
Q psy15088 214 TRNNNKCLPPGHVN-------------FSDEVTAAMRLCDGVVLFVDA-AEGVMLNT-ERLLKHAVQEKMAITLCVNKID 278 (1291)
Q Consensus 214 ~~~~~liDtpG~~~-------------~~~~~~~a~~~~D~~l~vVD~-~~g~~~~~-~~~~~~l~~~~~~~ilvvNKiD 278 (1291)
+..+.|+||||+.+ +...+..+++.+|++|+|+|+ ..++..++ ..+++++...++|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 35799999999864 456678899999999999996 67777666 4788898888999999999999
Q ss_pred ccc
Q psy15088 279 RLM 281 (1291)
Q Consensus 279 ~~~ 281 (1291)
...
T Consensus 210 l~~ 212 (315)
T 1jwy_B 210 LMD 212 (315)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 210
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.88 E-value=1.4e-05 Score=81.92 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=47.7
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-+|+++|.+++|||||+++|.+......... ..+.+.....+.+ .+....+.++||||+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 61 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM------------------ENSEDTYERRIMV---DKEEVTLIVYDIWEQ 61 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------------------------CEEEEEEEE---TTEEEEEEEECCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC------------------CCcCCeeeEEEEE---CCeEEEEEEEECCCc
Confidence 4899999999999999999985543221110 1111111111222 225678889999999
Q ss_pred ccccc-cc--cccccceEEEEecCCCc
Q psy15088 481 PVTLL-LP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~-l~--~~~~ad~~v~vida~~g 504 (1291)
..+.. +. ....+|++++|+|+...
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (169)
T 3q85_A 62 GDAGGWLQDHCLQTGDAFLIVFSVTDR 88 (169)
T ss_dssp --------CHHHHHCSEEEEEEETTCH
T ss_pred cccchhhhhhhhccCCEEEEEEECCCh
Confidence 75542 22 24467999999998874
No 211
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.88 E-value=2e-05 Score=79.90 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=51.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|+.++|||||+++|+...-.. ... +++.+.....+.. .+..+.+.++||||+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~~--~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFVD--ECD-----------------PTIEDSYRKQVVI---DGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCS--CCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCcc--ccC-----------------CccceEEEEEEEE---CCEEEEEEEEECCCch
Confidence 89999999999999999998653110 000 1111111111112 2245778999999997
Q ss_pred ccccc--ccccccceEEEEecCCCc
Q psy15088 482 VTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
.+..+ .....+|++++++|+...
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (166)
T 2ce2_X 63 EYSAMRDQYMRTGEGFLCVFAINNT 87 (166)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred hhhHHHHHhhccCCEEEEEEECCCH
Confidence 54422 234467899999998765
No 212
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.88 E-value=7.7e-06 Score=85.62 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred ceEEEEcccCCChhHHHHHHHhh
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
.+|+++|++++|||||+++|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 38999999999999999999865
No 213
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.87 E-value=8.3e-06 Score=86.74 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=36.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCC--CeEEEEEeCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGK--NYLMNIFDTP 478 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~--~~~~~liDTp 478 (1291)
.+|+++|+.++|||||+++|+........... . .+.++.....+.+ .+. ...+.|+|||
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--------------~--t~~~~~~~~~~~~---~~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYA--------------M--TSGVEVVVAPVTI---PDTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEC--------------------------------------------------CEEEEC---TTSSEEEEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCC--------------C--ccceEEEEEEEEE---CCcccEEEEEEEECC
Confidence 49999999999999999999865211110000 0 0111222222333 123 6789999999
Q ss_pred Cccccc--ccccccccceEEEEecCCCcc
Q psy15088 479 ASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 479 Gh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
|+..+. ....+..+|++++|+|+...-
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYYAILVFDVSSME 110 (208)
T ss_dssp TTHHHHHHHSTTCCCCCEEEEEEETTCHH
T ss_pred CcHHHHHHHHHHHhhCcEEEEEEECCCHH
Confidence 996543 233455789999999998763
No 214
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.87 E-value=1.9e-05 Score=96.63 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=57.8
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+|+|.+|+|||||+++|++...... -.|+......+.+ +++.+.|+|||
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~---------------------~~T~~~~~~~~~~-----~~~~~~l~Dt~ 374 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT---------------------IPTVGFNVETVTY-----KNVKFNVWDVG 374 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC---------------------CCCSSEEEEEEES-----SSCEEEEEEEC
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------------------CCccceeEEEEEe-----CCEEEEEEECC
Confidence 346999999999999999999987642111 1122222233444 67899999999
Q ss_pred Ccccccc--cccccccceEEEEecCCCc
Q psy15088 479 ASPVTLL--LPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~--l~~~~~ad~~v~vida~~g 504 (1291)
|+..+.. ...+..+|++|+|+|+...
T Consensus 375 G~~~~~~~~~~~~~~ad~~i~V~D~~~~ 402 (497)
T 3lvq_E 375 GQDKIRPLWRHYYTGTQGLIFVVDCADR 402 (497)
T ss_dssp CCGGGSGGGGGGGTTCCEEEEEEETTCG
T ss_pred CcHHHHHHHHHHhccCCEEEEEEECcch
Confidence 9976553 3456688999999999876
No 215
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.87 E-value=1.2e-05 Score=95.24 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=46.4
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecc----cc-------------
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLL----PD------------- 464 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~----~~------------- 464 (1291)
+|+|+|++|+|||||+|+|++.. ..+...+ ++|++.......+ +.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p-----------------~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYP-----------------FTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCC-----------------CcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 79999999999999999998764 3222221 3333322111000 00
Q ss_pred -cCC-CCeEEEEEeCCCccc----c-----cccccccccceEEEEecCCCc
Q psy15088 465 -VKG-KNYLMNIFDTPASPV----T-----LLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 465 -~~~-~~~~~~liDTpGh~~----~-----~~l~~~~~ad~~v~vida~~g 504 (1291)
..+ +...+.|+||||+.. . ..+..+..+|++++|+|+..+
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 000 236799999999832 1 124556788999999999875
No 216
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.87 E-value=8.9e-06 Score=93.99 Aligned_cols=89 Identities=18% Similarity=0.108 Sum_probs=54.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+|+|++++|||||+++|+... .. .. . -|+......+.+ ++..+.|+||||+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~~------------~~---~----pT~~~~~~~~~~-----~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--IV------------TT---I----PTIGFNVETVEY-----KNISFTVWDVGGQ 219 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--CE------------EE---E----EETTEEEEEEEE-----TTEEEEEEECC--
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--CC------------Cc---c----cccceEEEEEec-----CcEEEEEEECCCC
Confidence 489999999999999999997542 11 00 0 122222333444 6889999999999
Q ss_pred cccccc--ccccccceEEEEecCCCc--cchhhHhhHHH
Q psy15088 481 PVTLLL--PDVKGKNYLMNIFDTPGM--WDIHVRKFSKK 515 (1291)
Q Consensus 481 ~~~~~l--~~~~~ad~~v~vida~~g--~~~qt~~~~~~ 515 (1291)
..+..+ ..+..+|++|+|+|+... +......+...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~ 258 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 258 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHH
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHH
Confidence 766533 234577999999999653 44433333333
No 217
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.86 E-value=2.1e-05 Score=83.56 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=53.7
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+|+|+.++|||||+++|++..- ..... +++.......+.+ .+..+.+.|+|||
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~l~Dt~ 70 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYE-----------------PTKADSYRKKVVL---DGEEVQIDILDTA 70 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCC-----------------TTCCEEEEEEEEE---TTEEEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCC-----------------CccceEEEEEEEE---CCEEEEEEEEcCC
Confidence 346999999999999999999986641 11000 1111111112222 2245689999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ .....+|++++|+|+...
T Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 71 GQEDYAAIRDNYFRSGEGFLCVFSITEM 98 (206)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred ChhhhHHHHHHHHhhCCEEEEEEECCCH
Confidence 99755422 234467899999998865
No 218
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.86 E-value=1.9e-05 Score=83.29 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=52.2
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|++++|||||+++|+...-... ..+ + .+.+... .+.+ .+....+.|+||||
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-----t----------~~~~~~~-~~~~-----~~~~~~~~l~Dt~G 65 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDT-YIP-----T----------IEDTYRQ-VISC-----DKSVCTLQITDTTG 65 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCT-TSC-----C----------CCEEEEE-EEEE-----TTEEEEEEEEECCG
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCc-ccC-----c----------cccceeE-EEEE-----CCEEEEEEEEeCCC
Confidence 45999999999999999999986432100 000 0 0111110 0111 22467899999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 66 SHQFPAMQRLSISKGHAFILVFSVTSK 92 (199)
T ss_dssp GGSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred hHHhHHHHHHhhccCCEEEEEEECcCH
Confidence 9755422 234467899999998864
No 219
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.86 E-value=2.6e-05 Score=96.14 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=59.8
Q ss_pred ceeEEecCCCccc-----------cHHHHHHHhhhcCcEEEEEECCC-CCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVN-----------FSDEVTAAMRLCDGVVLFVDAAE-GVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~-----------~~~~~~~a~~~~D~~l~vVD~~~-g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.||||||+.+ |...+...++.+|++|+|+|+.. ++..++..+++.++..++|+++|+||+|...
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 3689999999976 66777888999999999999988 7889999999999888999999999999864
No 220
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.84 E-value=6.4e-06 Score=89.22 Aligned_cols=93 Identities=32% Similarity=0.580 Sum_probs=70.7
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
+|++||||++..|+..+...+... ...+.+++++++.+++.+|+..|+. ....
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 164 (217)
T 3be4_A 85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVW 164 (217)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccccc
Confidence 789999999987776655433321 2234689999999999999988752 2345
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
|.|++.+.+++|+..|...+.|++.+|...+.+..+++.+
T Consensus 165 ~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~ 204 (217)
T 3be4_A 165 RDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKL 204 (217)
T ss_dssp CGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 7788899999999999999999988887666666666643
No 221
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.83 E-value=2.4e-05 Score=82.77 Aligned_cols=83 Identities=11% Similarity=0.089 Sum_probs=52.1
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+++|||||+++|+...-..... .+. +.+. .. .+.+ .+....+.++||||
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~------~t~----------~~~~-~~--~~~~---~~~~~~~~l~Dt~G 85 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYD------PTL----------ESTY-RH--QATI---DDEVVSMEILDTAG 85 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCC------TTC----------CEEE-EE--EEEE---TTEEEEEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccC------CCC----------CceE-EE--EEEE---CCEEEEEEEEECCC
Confidence 3599999999999999999998753211000 000 1111 01 1111 22567899999999
Q ss_pred ccc-ccccccccccceEEEEecCCCc
Q psy15088 480 SPV-TLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~-~~~l~~~~~ad~~v~vida~~g 504 (1291)
+.. .........+|++++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~d~iilv~D~~~~ 111 (196)
T 2atv_A 86 QEDTIQREGHMRWGEGFVLVYDITDR 111 (196)
T ss_dssp CCCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCcccchhhhhccCCEEEEEEECcCH
Confidence 975 1122234467999999998864
No 222
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.83 E-value=2.4e-05 Score=79.66 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=51.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc--hhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM--LNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~--~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++|+|+|+...-. .....+...++. .++|+++|+||+|...
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 4578999999999998888888999999999999987532 222222222222 3789999999999864
No 223
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.82 E-value=8.5e-06 Score=87.69 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=54.5
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc-------CCCCe
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV-------KGKNY 470 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-------~~~~~ 470 (1291)
++..+|+|+|++++|||||+++|+...... . ....++++.....+.+... +....
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~---~---------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP---K---------------FITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC---E---------------EEEEEEEEEEEEEEEEEC-------CCEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc---C---------------CCCceeEEEEEEEEEECCccccccccCceeE
Confidence 345699999999999999999998653110 0 0001111111111222100 00167
Q ss_pred EEEEEeCCCccccc--ccccccccceEEEEecCCCcc
Q psy15088 471 LMNIFDTPASPVTL--LLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 471 ~~~liDTpGh~~~~--~l~~~~~ad~~v~vida~~g~ 505 (1291)
.+.|+||||+..+. ....+..+|++|+|+|+....
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~ 121 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ 121 (217)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH
T ss_pred EEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH
Confidence 89999999997544 223445779999999998763
No 224
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.82 E-value=1.4e-05 Score=93.32 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCC-----cccCCccc----------------ccccccccc--ccccc---------
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHP-----GYRQPAEE----------------KNLRYTDTL--FTEQE--------- 448 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~-----i~~~~~~~----------------~~~~~~D~~--~~E~e--------- 448 (1291)
..|+|+|.+++|||||+|+|++.... ++...+.. .+..+++.. ..+.+
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999976532 22111110 000001111 11111
Q ss_pred -cCceeeeccceecccccCCCCeEEEEEeCCCccc-------------cc--ccccc-cccceEEEEecCCCccchhhH-
Q psy15088 449 -RGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV-------------TL--LLPDV-KGKNYLMNIFDTPGMWDIHVR- 510 (1291)
Q Consensus 449 -rGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~-------------~~--~l~~~-~~ad~~v~vida~~g~~~qt~- 510 (1291)
+|++.+...+.+..+ ....++|+||||... .. ....+ ..++++++++|+..++..++.
T Consensus 112 ~~gi~~~~~~~~i~~~----~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 112 NKGISPVPINLRVYSP----HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp TTCCCCCCEEEEEEET----TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred CCCcccCceEEEEecC----CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 344333222222221 357899999999731 00 11111 233566667888888877765
Q ss_pred hhHHHHHhhcCccchhhhhh
Q psy15088 511 KFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 511 ~~~~~~~~~~~~~~fv~fil 530 (1291)
.+++.....+.|.++ ++|
T Consensus 188 ~i~~~~~~~~~~~i~--V~N 205 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIG--VIT 205 (353)
T ss_dssp HHHHHHCTTCTTEEE--EEE
T ss_pred HHHHHhCcCCCceEE--Eec
Confidence 377776666777765 555
No 225
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.82 E-value=2.1e-05 Score=83.79 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=53.4
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|.+++|||||+++|+...-.. . ....++++.....+.+ .++...+.|+|||
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~---------------~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~ 86 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE---R---------------QGSTIGVDFTMKTLEI---QGKRVKLQIWDTA 86 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEE---TTEEEEEEEECCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC---C---------------CCCCcceEEEEEEEEE---CCEEEEEEEEECC
Confidence 34599999999999999999998653110 0 0001111221222223 1234789999999
Q ss_pred Cccccccc--ccccccceEEEEecCCCc
Q psy15088 479 ASPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
|+..+..+ ..+..+|++|+|+|+...
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (201)
T 2hup_A 87 GQERFRTITQSYYRSANGAILAYDITKR 114 (201)
T ss_dssp TCGGGHHHHHHHHTTCSEEEEEEETTBH
T ss_pred CcHhHHHHHHHHHhhCCEEEEEEECCCH
Confidence 99755432 334577999999998765
No 226
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.82 E-value=2.1e-05 Score=83.10 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=53.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHH-HHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERL-LKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+..+...++..- +..++. .++|+++|+||+|...
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 378999999999999888999999999999999988655544322 233333 4789999999999864
No 227
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.81 E-value=4.5e-05 Score=82.15 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=53.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+++|+...-... . ..+. |.+. .. .+. ..+....+.|+||||+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~--~----~~t~----------~~~~-~~--~~~---~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPET--Y----VPTV----------FENY-TA--CLE---TEEQRVELSLWDTSGS 85 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSS--C----CCCS----------EEEE-EE--EEE---C--CEEEEEEEEECCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCC--c----CCee----------eeeE-EE--EEE---ECCEEEEEEEEECCCC
Confidence 4899999999999999999986532110 0 0001 1111 00 111 1236788999999999
Q ss_pred ccccccc--cccccceEEEEecCCCcc
Q psy15088 481 PVTLLLP--DVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 481 ~~~~~l~--~~~~ad~~v~vida~~g~ 505 (1291)
..+..+. .+..+|++|+|+|+...-
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~d~~~~~ 112 (214)
T 3q3j_B 86 PYYDNVRPLCYSDSDAVLLCFDISRPE 112 (214)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCTH
T ss_pred HhHHHHHHHHcCCCeEEEEEEECcCHH
Confidence 7655332 345789999999998763
No 228
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.81 E-value=5.8e-05 Score=80.88 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=49.4
Q ss_pred ceeEEecCCCccccHHH-HHHHhhhcCcEEEEEECCCCCchhHHHHHHHHH---------HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDE-VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAV---------QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~-~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~---------~~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+.+|... ....++.+|++|||+|+.. .......+.+++. ..++|+++|+||+|+..
T Consensus 54 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 54 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred cEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 47899999999998874 4555899999999999876 3333344443332 23689999999999864
No 229
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.81 E-value=0.00013 Score=81.82 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=50.0
Q ss_pred eeEEecCCCccccH-------H-------HHHHHhhh-------------cCcEEEEEECC-CCCchhHHHHHHHHHHcC
Q psy15088 216 NNNKCLPPGHVNFS-------D-------EVTAAMRL-------------CDGVVLFVDAA-EGVMLNTERLLKHAVQEK 267 (1291)
Q Consensus 216 ~~~liDtpG~~~~~-------~-------~~~~a~~~-------------~D~~l~vVD~~-~g~~~~~~~~~~~l~~~~ 267 (1291)
+++++||||+.++. . +....++. +|++|++||.. .|+.+.+..+++.+.. +
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~ 144 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K 144 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-T
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-c
Confidence 78999999984331 1 11333443 77888888654 5999999999999988 9
Q ss_pred CcEEEEEEccCccc
Q psy15088 268 MAITLCVNKIDRLM 281 (1291)
Q Consensus 268 ~~~ilvvNKiD~~~ 281 (1291)
+|+|+|+||+|...
T Consensus 145 ~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 145 VNIIPLIAKADTLT 158 (274)
T ss_dssp SCEEEEESSGGGSC
T ss_pred CCEEEEEeccCCCC
Confidence 99999999999863
No 230
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.81 E-value=2.6e-05 Score=83.89 Aligned_cols=83 Identities=24% Similarity=0.231 Sum_probs=44.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|..++|||||+++|+...-.. .. ..++.+.....+.+ .+....+.|+||||
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~-----------------~~t~~~~~~~~~~~---~~~~~~l~l~Dt~G 91 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPE--SY-----------------TPTVFERYMVNLQV---KGKPVHLHIWDTAG 91 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------------------------CCCCCEEEEEEEEE---TTEEEEEEEEEC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC--CC-----------------CCccceeEEEEEEE---CCEEEEEEEEECCC
Confidence 3599999999999999999998543110 00 01111111111112 22456899999999
Q ss_pred cccccccc--cccccceEEEEecCCCc
Q psy15088 480 SPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
+..+..+. .+..+|++++|+|+...
T Consensus 92 ~~~~~~~~~~~~~~~d~~i~v~d~~~~ 118 (214)
T 2j1l_A 92 QDDYDRLRPLFYPDASVLLLCFDVTSP 118 (214)
T ss_dssp -------------CEEEEEEEEETTCH
T ss_pred chhhhHHHHHHhccCCEEEEEEECcCH
Confidence 97554332 34578999999998865
No 231
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.80 E-value=2.2e-05 Score=81.42 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=52.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh-HHHHHHHHHHc---CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-TERLLKHAVQE---KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~-~~~~~~~l~~~---~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+..|.......++.+|++|+|+|+..+...+ ....+..+++. ++|+++|+||+|...
T Consensus 61 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp EEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 47899999999999888888899999999999998764422 23344444443 788999999999863
No 232
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.80 E-value=2e-05 Score=88.55 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=52.1
Q ss_pred CceeEEecCCCccccHH---------H---HHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSD---------E---VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~---------~---~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.. . .....+.+|++|+|+|+.. ......+..++.+.++|+++|+||+|...
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 45788999999987651 1 1233479999999999987 34566677888889999999999999864
No 233
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.80 E-value=7.4e-05 Score=80.29 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=51.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhh----cCcEEEEEECC---CCCchhHHHHHHHHHH------cCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRL----CDGVVLFVDAA---EGVMLNTERLLKHAVQ------EKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~----~D~~l~vVD~~---~g~~~~~~~~~~~l~~------~~~~~ilvvNKiD~~ 280 (1291)
+..+.++||||+..|.......++. +|++|+|+|+. +........+.+.+.. .++|+++|+||+|..
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 4578899999999987777666666 99999999998 4444444444444432 489999999999986
Q ss_pred c
Q psy15088 281 M 281 (1291)
Q Consensus 281 ~ 281 (1291)
.
T Consensus 134 ~ 134 (218)
T 1nrj_B 134 T 134 (218)
T ss_dssp T
T ss_pred c
Confidence 4
No 234
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.79 E-value=4.9e-05 Score=81.37 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=54.5
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|..++|||||+++|........ .. .+. |.+. ...+.+ .+....+.|+|||
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~-----~t~----------~~~~---~~~~~~---~~~~~~l~i~Dt~ 84 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YV-----PTV----------FENY---TASFEI---DTQRIELSLWDTS 84 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CC-----CCS----------EEEE---EEEEES---SSSEEEEEEEEEC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cC-----Ccc----------ceeE---EEEEEE---CCEEEEEEEEeCC
Confidence 346999999999999999999987532100 00 000 1110 011111 2356889999999
Q ss_pred Ccccccccc--cccccceEEEEecCCCc
Q psy15088 479 ASPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 479 Gh~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
|+..+..+. ....+|++++|+|+...
T Consensus 85 G~~~~~~~~~~~~~~~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 85 GSPYYDNVRPLSYPDSDAVLICFDISRP 112 (205)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred CcHhhhHHHHhhccCCCEEEEEEECCCH
Confidence 997655332 34578999999998865
No 235
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.78 E-value=2.3e-05 Score=91.08 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=54.3
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc------------CCCC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV------------KGKN 469 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------------~~~~ 469 (1291)
+|+|+|.+|+|||||+++|.+.. ..+...+ ++|++.....+.+++. ....
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p-----------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~ 65 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG-IEAANYP-----------------FCTIEPNTGVVPMPDPRLDALAEIVKPERILP 65 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC-------C-----------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCC-----------------CceECceEEEEecCCcccceeeeeecccceee
Confidence 79999999999999999998754 2221111 4455544433434210 0012
Q ss_pred eEEEEEeCCCccccc---------ccccccccceEEEEecCCCc
Q psy15088 470 YLMNIFDTPASPVTL---------LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 470 ~~~~liDTpGh~~~~---------~l~~~~~ad~~v~vida~~g 504 (1291)
..+.++||||+.... -+..+..+|++++|+|+.++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 579999999985321 12235688999999999874
No 236
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.78 E-value=2.9e-05 Score=80.53 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=51.7
Q ss_pred CceeEEecCCCccccH--------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc---CCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFS--------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE---KMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~--------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~---~~~~ilvvNKiD~~ 280 (1291)
+..+.++||||+.++. ..+...++.+|++|+|+|+..+...+....+..+++. ++|+++|+||+|+.
T Consensus 51 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 51 GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 5578899999986532 1234568999999999999988776666666666553 68999999999975
No 237
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.77 E-value=4.1e-05 Score=78.98 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=52.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.......++.+|++|+|+|+..+...+... .+..++. .++|+++|+||+|...
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 47899999999999988899999999999999998764433332 2222333 5789999999999864
No 238
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.76 E-value=7.2e-05 Score=79.13 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=54.4
Q ss_pred ceeEEecCCCccccHHHH---HHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc-----CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEV---TAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE-----KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~---~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~-----~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.... ...++.+|++|+|+|+..........+..++.+. ++|+++|.||+|+..
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred eEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 478899999999987666 7889999999999999987444555555665543 789999999999864
No 239
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.76 E-value=1.4e-05 Score=82.07 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=52.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC--chhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV--MLNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~--~~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++|+|+|+...- ......+...++. .++|+++|+||+|...
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 347899999999988877778889999999999998763 3333334444443 5889999999999864
No 240
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.75 E-value=3.4e-05 Score=95.05 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=62.6
Q ss_pred CccccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecc--cccCCCCeEEE
Q psy15088 396 TPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLL--PDVKGKNYLMN 473 (1291)
Q Consensus 396 ~~~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~~~~~~~~ 473 (1291)
....+..|+|+|.+|+|||||+|+|++....+ ..+ |+|...+...+.| +.....+..+.
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~-----------------~tt~~~T~gi~~~~~~~~~~~~~~i~ 94 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLG-----------------STVQSHTKGIWMWCVPHPKKPGHILV 94 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCC-----------------CSSSCCCCSEEEEEEECSSSTTCEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccC-----------------CCCCCceeEEEEeecccccCCCceEE
Confidence 34566789999999999999999999775322 111 2332322222223 11122567899
Q ss_pred EEeCCCccccc-----------ccccccccceEEEEecCCCccchhhHhhHHHHHh
Q psy15088 474 IFDTPASPVTL-----------LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAH 518 (1291)
Q Consensus 474 liDTpGh~~~~-----------~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~ 518 (1291)
|+||||..... ++..+- + .++|+|+.++++.++..+...+..
T Consensus 95 LiDTpGi~~~~~~~~~~~~~~fala~ll-s--s~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 95 LLDTEGLGDVEKGDNQNDSWIFALAVLL-S--STFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp EEEECCBCCGGGCCCTTHHHHHHHHHHH-C--SEEEEEEESCSSHHHHHTTHHHHT
T ss_pred EecCCCcCcccccchhHHHHHHHHHHHh-c--CeEEEECCCCccHHHHHHHHHHHH
Confidence 99999984211 112211 2 256779999999998877665543
No 241
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=2.8e-05 Score=82.56 Aligned_cols=67 Identities=22% Similarity=0.181 Sum_probs=51.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+..+...++.. .+..++. .++|+++|+||+|...
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred EEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 46899999999999988899999999999999998765544432 2333333 3789999999999863
No 242
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.75 E-value=4.2e-05 Score=80.26 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-+|+|+|..++|||||+++|+...-... .. .|.......+.+ .+....+.++||||+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~-------------------~t~~~~~~~~~~---~~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQE-ES-------------------PEGGRFKKEIVV---DGQSYLLLIRDEGGP 77 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCC-CC-------------------TTCEEEEEEEEE---TTEEEEEEEEECSSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-cC-------------------CCcceEEEEEEE---CCEEEEEEEEECCCC
Confidence 3899999999999999999986532110 00 000000011222 124567888999999
Q ss_pred ccccccccccccceEEEEecCCCcc
Q psy15088 481 PVTLLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 481 ~~~~~l~~~~~ad~~v~vida~~g~ 505 (1291)
..+. ....+|++++|+|+...-
T Consensus 78 ~~~~---~~~~~~~~i~v~d~~~~~ 99 (184)
T 3ihw_A 78 PELQ---FAAWVDAVVFVFSLEDEI 99 (184)
T ss_dssp CCHH---HHHHCSEEEEEEETTCHH
T ss_pred hhhh---eecCCCEEEEEEECcCHH
Confidence 7655 344678999999998764
No 243
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.74 E-value=5e-05 Score=91.95 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=65.5
Q ss_pred CCCccccccCCCceeeecCceeEEecCCCcc-ccH--------HHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc
Q psy15088 196 SSPSIYCSNKSHSWEIVCTRNNNKCLPPGHV-NFS--------DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE 266 (1291)
Q Consensus 196 t~as~~~~~~~~~~~ii~~~~~~liDtpG~~-~~~--------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~ 266 (1291)
..+..|++.....+.+ ++..+.++||||+. ++. ..+...++.||++|+|+|+..+...++.++++.+ .
T Consensus 273 ~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~ 349 (482)
T 1xzp_A 273 DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--K 349 (482)
T ss_dssp CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--T
T ss_pred CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--c
Confidence 3445566665555555 37789999999998 543 3456789999999999999999888888888776 4
Q ss_pred CCcEEEEEEccCccc
Q psy15088 267 KMAITLCVNKIDRLM 281 (1291)
Q Consensus 267 ~~~~ilvvNKiD~~~ 281 (1291)
++|+++|+||+|+..
T Consensus 350 ~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 350 NKRYLVVINKVDVVE 364 (482)
T ss_dssp TSSEEEEEEECSSCC
T ss_pred CCCEEEEEECccccc
Confidence 889999999999863
No 244
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.74 E-value=3.6e-05 Score=80.80 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=49.8
Q ss_pred ceeEEecCCCccccH-HHHHHHhhhcCcEEEEEECCCCCchhH-----HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFS-DEVTAAMRLCDGVVLFVDAAEGVMLNT-----ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~-~~~~~a~~~~D~~l~vVD~~~g~~~~~-----~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+.+|. ......++.+|++|||+|+......+. .++.+.+...++|+++|+||+|...
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 378999999998887 556778899999999999986432222 2222222245789999999999864
No 245
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.74 E-value=4.4e-05 Score=80.44 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHH-HcCCcEEEEEEccC
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAV-QEKMAITLCVNKID 278 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~-~~~~~~ilvvNKiD 278 (1291)
..+.++||||+.+|.......++.+|++|+|+|+..+...++.. .+..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 47899999999999888888999999999999998875444432 233333 35789999999999
No 246
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.74 E-value=3e-05 Score=78.81 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=51.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCch-----hHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVML-----NTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~-----~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.......++.+|++++|+|+...-.. ....+.+.+...++|+++|+||+|...
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 3588999999999998888899999999999999874322 222233333335899999999999864
No 247
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.73 E-value=2.8e-05 Score=81.39 Aligned_cols=67 Identities=22% Similarity=0.178 Sum_probs=53.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+..+...+. ...+..+.. .++|+++|+||+|...
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 378999999999999888999999999999999987654444 233333433 5789999999999864
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.73 E-value=6e-06 Score=90.46 Aligned_cols=92 Identities=29% Similarity=0.546 Sum_probs=68.4
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
+|++||||++..|+..+...+... ...+.+++++++.+.+.+|+..|.. ....
T Consensus 96 g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 175 (233)
T 1ak2_A 96 GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIR 175 (233)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccC
Confidence 789999999977766554433221 1245688999999999999988742 2234
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchh
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAE 708 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~ 708 (1291)
|.|++.+.+++|+..|...+.|++.+|+..+.+..+++.
T Consensus 176 r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~ 214 (233)
T 1ak2_A 176 RSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDAS 214 (233)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 778889999999999998888988877655555566664
No 249
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.72 E-value=2.6e-05 Score=86.78 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=51.9
Q ss_pred CceeEEecCCCccccHHH---------H-HHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDE---------V-TAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~---------~-~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+.++||||+.++... + ...+ +.+|++|+|+|+.. ......+..++.+.++|+++|+||+|...
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 568999999999877531 2 2222 78999999999987 45566677888889999999999999864
No 250
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.72 E-value=3e-05 Score=83.41 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=49.3
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
+..+|+++|++++|||||+++|+.......... ...+++. .+ ....++++|||
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~---------------~~~~~~~-------~~-----~~~~~~l~Dt~ 63 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS---------------QEPLSAA-------DY-----DGSGVTLVDFP 63 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC---------------SSCEEET-------TG-----GGSSCEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee---------------cCceEEE-------Ee-----eCceEEEEECC
Confidence 456999999999999999999987642110000 0001111 11 35678999999
Q ss_pred Cccccccc--c----cccccceEEEEecCC
Q psy15088 479 ASPVTLLL--P----DVKGKNYLMNIFDTP 502 (1291)
Q Consensus 479 Gh~~~~~l--~----~~~~ad~~v~vida~ 502 (1291)
|+..++.+ . ....+|++++|+|+.
T Consensus 64 G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 64 GHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp CCGGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred CcHHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 99654311 1 112368999999998
No 251
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.71 E-value=2.7e-05 Score=81.66 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=48.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc--hhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM--LNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~--~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.+|.......++.+|++|+|+|+..+-. .....+...++. .++|+++|+||+|...
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 4588999999998887777788999999999999988632 222223333332 5889999999999864
No 252
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.71 E-value=2.3e-05 Score=82.33 Aligned_cols=68 Identities=18% Similarity=0.071 Sum_probs=52.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC--chhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV--MLNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~--~~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.......++.+|++|||+|+...- ......+...++. .++|+++|+||+|...
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 457899999999998888888899999999999997643 2222333333332 5889999999999864
No 253
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.70 E-value=4.1e-05 Score=78.18 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=51.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.+|.......++.+|++|+|+|+...-..+.. ..+..+.+ .++|+++|.||+|...
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 34789999999999988888899999999999999875433222 22333333 3678899999999864
No 254
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.69 E-value=2.5e-05 Score=82.48 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=52.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHHc-----------CCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQE-----------KMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~~-----------~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+..|.......++.+|++|+|+|+..+-.-... ..+..+.+. ++|+++|+||+|+..
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 45789999999999888778889999999999999986432222 233333332 899999999999874
No 255
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.69 E-value=8.3e-05 Score=86.88 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=53.3
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|.+|+|||||+++|.+... .... ..++|.+.....+.+ .+..+.++|||
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~-----------------~~~~t~~~~~~~~~~-----~~~~~~l~Dt~ 222 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIAS-----------------YPFTTRGINVGQFED-----GYFRYQIIDTP 222 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEEC-----------------CTTCSSCEEEEEEEE-----TTEEEEEEECT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-----------------CCCeeeceeEEEEEe-----cCceEEEEeCC
Confidence 456999999999999999999986531 1100 114444333333333 57889999999
Q ss_pred Cccccc----------cccc-ccccceEEEEecCCC
Q psy15088 479 ASPVTL----------LLPD-VKGKNYLMNIFDTPG 503 (1291)
Q Consensus 479 Gh~~~~----------~l~~-~~~ad~~v~vida~~ 503 (1291)
|+.... ++.+ ...+|.+++|+|+..
T Consensus 223 G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~ 258 (357)
T 2e87_A 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE 258 (357)
T ss_dssp TTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC
T ss_pred CccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence 984321 1111 225789999999875
No 256
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.68 E-value=7.7e-05 Score=76.08 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=51.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+..+.......++.+|++|+|+|+...-..+... .+..+.+ .++|+++|+||+|...
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 37899999999999888888999999999999998754333322 2223332 3788999999999864
No 257
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.66 E-value=5.1e-05 Score=79.11 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=52.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHH---HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+..+...+... .+..++ ..++|+++|+||+|...
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 37889999999999988888999999999999998754433322 222222 35789999999999863
No 258
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.66 E-value=4.7e-05 Score=77.85 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=52.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHHc---CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQE---KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~---~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+.++.......++.+|++|+|+|+..+...+. ...+..+++. ++|+++|.||+|...
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 478899999999988888889999999999999987654333 2334445443 577899999999864
No 259
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.66 E-value=2.5e-05 Score=82.05 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=52.1
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC--chhHHHHHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV--MLNTERLLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~--~~~~~~~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++|+|+|+...- ......+...++. .++|+++|+||+|...
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 347899999999988877778899999999999998753 2222333333333 4789999999999864
No 260
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.65 E-value=3.6e-05 Score=81.29 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=46.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh--HHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN--TERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~--~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.......++.+|++|+|+|+..+-.-+ ...+.+.++. .++|+++|+||+|...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 457899999999988777778899999999999998763222 2222223322 3789999999999864
No 261
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.65 E-value=2.6e-05 Score=94.26 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=48.1
Q ss_pred CCccccccCCCceeeecCceeEEecCCCccccHHHH--------HHHhhhcCcEEEEEECCCCCch----hHHHHHHHHH
Q psy15088 197 SPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEV--------TAAMRLCDGVVLFVDAAEGVML----NTERLLKHAV 264 (1291)
Q Consensus 197 ~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~~--------~~a~~~~D~~l~vVD~~~g~~~----~~~~~~~~l~ 264 (1291)
.++.|++.....+.+ ++..++++||||+.++...+ ...++.+|++|+|+|+..+... .+..+++.+.
T Consensus 264 ~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~ 342 (476)
T 3gee_A 264 MPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP 342 (476)
T ss_dssp ---------CEEEEE-TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT
T ss_pred CCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC
Confidence 344555555554554 37789999999998765332 3367899999999999998887 5555555544
Q ss_pred HcCCcEEEEEEccCccc
Q psy15088 265 QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 265 ~~~~~~ilvvNKiD~~~ 281 (1291)
++|+++|+||+|+..
T Consensus 343 --~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 343 --AAKFLTVANKLDRAA 357 (476)
T ss_dssp --TSEEEEEEECTTSCT
T ss_pred --CCCEEEEEECcCCCC
Confidence 789999999999864
No 262
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.65 E-value=3.8e-05 Score=80.96 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=52.1
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+...-.... ......+++. ++|+++|+||+|...
T Consensus 72 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 72 ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred EEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 67899999999988778888999999999999987644433 2334444444 689999999999864
No 263
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.64 E-value=2.4e-05 Score=81.66 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHH---HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++|+|+|+...-..+. ..+...++ ..++|+++|+||+|+..
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 4589999999999887777788999999999999988633322 22333333 25789999999999864
No 264
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.64 E-value=8e-05 Score=81.65 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=46.5
Q ss_pred CceeEEecCCCcccc-------HHHH----HHHhhhcCcEEEEEECCCCCchhHHHHHHHHH-----HcCCcEEEEEEcc
Q psy15088 214 TRNNNKCLPPGHVNF-------SDEV----TAAMRLCDGVVLFVDAAEGVMLNTERLLKHAV-----QEKMAITLCVNKI 277 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~-------~~~~----~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~-----~~~~~~ilvvNKi 277 (1291)
++.++|+||||+.+. ..++ ....+.+|++|+|+|+. .....+...++.+. ...+|+++|+||+
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 568999999997653 2233 33344569999999987 45556666665554 2456999999999
Q ss_pred Cccc
Q psy15088 278 DRLM 281 (1291)
Q Consensus 278 D~~~ 281 (1291)
|...
T Consensus 156 D~~~ 159 (239)
T 3lxx_A 156 DDLG 159 (239)
T ss_dssp GGC-
T ss_pred ccCC
Confidence 9864
No 265
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.63 E-value=5.2e-05 Score=77.10 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=47.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.......++.+|++++|+|+...-..... ..+..+. ..++|+++|+||+|...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 3788999999999998888999999999999999864322221 1122222 24799999999999864
No 266
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=7e-05 Score=78.90 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=52.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHHc---CCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQE---KMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~~---~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.+|.......++.+|++|+|+|+...-..+.. ..+..+++. ++|+++|+||+|...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 34789999999999988888899999999999999875433322 233334432 789999999999863
No 267
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.63 E-value=6e-05 Score=79.98 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=52.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.++.++||||+.+|.......++.+|++|+|+|+..+-.... ...+..+.. .++|+++|+||+|...
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 478999999999999888889999999999999987543222 223334443 4789999999999864
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.63 E-value=1.1e-05 Score=87.31 Aligned_cols=92 Identities=26% Similarity=0.496 Sum_probs=68.4
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSG 669 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~ 669 (1291)
+|++||||++..|+..|...+.+. ...+.+++++++.+++.+|+..|.. ....
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~ 164 (220)
T 1aky_A 85 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQ 164 (220)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred CeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccccc
Confidence 789999999877766555433321 1234688999999999999988752 1235
Q ss_pred CCCCCHHHHHHHHhhccccccceEEeecchhhhhhhchh
Q psy15088 670 RADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAE 708 (1291)
Q Consensus 670 r~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~ 708 (1291)
|.|++.+.+++|+..|...+.|++.+|...+.+..+++.
T Consensus 165 r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~ 203 (220)
T 1aky_A 165 RSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDAS 203 (220)
T ss_dssp CTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 778889999999999999999988877655555566654
No 269
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.62 E-value=4e-05 Score=79.78 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=51.3
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC-----chhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV-----MLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~-----~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+..+- ......+.+.....++|+++|+||+|...
T Consensus 67 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp EEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 5778999999998877888899999999999998752 22223333444456889999999999864
No 270
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.62 E-value=8.1e-05 Score=78.20 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=45.0
Q ss_pred CceeEEecCCCccccHHHHHHHh----hhcCcEEEEEECCCCCchhH---HHHHHHHHH------cCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAM----RLCDGVVLFVDAAEGVMLNT---ERLLKHAVQ------EKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~----~~~D~~l~vVD~~~g~~~~~---~~~~~~l~~------~~~~~ilvvNKiD~~ 280 (1291)
+..+.++||||+.+|.......+ ..+|++|+|+|+........ ..+...+.. .++|+++|+||+|..
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 45788999999988754444444 44999999999872222211 112222211 389999999999986
Q ss_pred c
Q psy15088 281 M 281 (1291)
Q Consensus 281 ~ 281 (1291)
.
T Consensus 170 ~ 170 (193)
T 2ged_A 170 T 170 (193)
T ss_dssp T
T ss_pred C
Confidence 4
No 271
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.62 E-value=7.1e-05 Score=76.54 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=51.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh-HHHHHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-TERLLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~-~~~~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-... ....+..+.+ .++|+++|+||+|...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 36889999999999988888999999999999998643222 2334444443 3789999999999864
No 272
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.62 E-value=4.9e-05 Score=78.65 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+..|.......++.+|++|+|+|+..+...+. ...+..++. .++|+++|+||+|...
T Consensus 61 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred EEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 78899999999998888888999999999999987644333 222333333 5789999999999864
No 273
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.62 E-value=3.1e-05 Score=82.68 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhc-CCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT-HPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~-~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
+|+++|++|+|||||+++|++.. ...+.+ ..|+|.... .+.+ .+ .+.++||||+
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~-----------------~~G~~~~~~--~~~~-----~~-~~~l~Dt~G~ 82 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQKSLARTSK-----------------TPGRTQLIN--LFEV-----AD-GKRLVDLPGY 82 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC------------------------------CCEE--EEEE-----ET-TEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccccC-----------------CCccceeeE--EEEe-----cC-CEEEEECcCC
Confidence 89999999999999999997653 111111 125554322 1222 12 5788999998
Q ss_pred ccc----------c-----ccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccch
Q psy15088 481 PVT----------L-----LLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525 (1291)
Q Consensus 481 ~~~----------~-----~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~f 525 (1291)
... + .+.....++.+++++|+..+....+..+.......++|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 83 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp C------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE
T ss_pred cccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE
Confidence 421 1 11111356788899999887655555555555556666543
No 274
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.62 E-value=9.7e-05 Score=77.56 Aligned_cols=83 Identities=8% Similarity=0.073 Sum_probs=50.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|..++|||||+++|+...-. .... .+. |.+. ...+.. .+....+.|+||||
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~----~t~----------~~~~---~~~~~~---~~~~~~l~i~Dt~G 78 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFI--SEYD----PNL----------EDTY---SSEETV---DHQPVHLRVMDTAD 78 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--SCCC----TTC----------CEEE---EEEEEE---TTEEEEEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCC--cccC----CCc----------ccee---eEEEEE---CCEEEEEEEEECCC
Confidence 349999999999999999999865311 0000 000 1111 011111 22567899999999
Q ss_pred ccccccc-ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL-PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l-~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ ..+..+|++++|+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 79 LDTPRNCERYLNWAHAFLVVYSVDSR 104 (187)
T ss_dssp ---CCCTHHHHTTCSEEEEEEETTCH
T ss_pred CCcchhHHHHHhhCCEEEEEEECCCH
Confidence 9755432 234468999999998854
No 275
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.62 E-value=5.9e-05 Score=78.41 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-----HHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-----ERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-----~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+...-..+. ..+.+.....++|+++|+||+|...
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred EEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 68899999999999888899999999999999986432222 2222222234899999999999864
No 276
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.62 E-value=5.3e-05 Score=78.78 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=40.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+...-.-+. ...+..+++ .++|+++|+||+|...
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 478999999999887777778899999999999987533222 223334443 3789999999999864
No 277
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.62 E-value=2.5e-05 Score=90.43 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=54.4
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
+.+|+++|.+|+|||||+++|......+ ... ..+|+......+.+. .+..+.|+||||
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-~~~-----------------~ftTl~p~~g~v~~~----~~~~~~l~DtPG 215 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-ADY-----------------HFTTLVPNLGMVETD----DGRSFVMADLPG 215 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-SST-----------------TSSCCCCCEEEEECS----SSCEEEEEEHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-ccC-----------------CccccCceEEEEEeC----CCceEEEecCCC
Confidence 3489999999999999999997553111 111 144544443344442 247899999999
Q ss_pred ccc----c-----cccccccccceEEEEecCCC
Q psy15088 480 SPV----T-----LLLPDVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 480 h~~----~-----~~l~~~~~ad~~v~vida~~ 503 (1291)
+.. . .-++.+..+|++|+|+|+..
T Consensus 216 ~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 216 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred CcccccccchhHHHHHHHHHhccEEEEEEECCc
Confidence 631 1 12344556899999999975
No 278
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.61 E-value=9e-05 Score=76.39 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=50.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-.... ...+..++. .++|+++|+||+|...
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 378899999999988888888999999999999976433222 122223322 4789999999999864
No 279
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.60 E-value=5.4e-05 Score=77.09 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=50.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++++|+|+...-..+. ...+..+. ..++|+++|+||+|...
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 368899999999998888888999999999999886422222 12222222 34899999999999864
No 280
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.60 E-value=7.6e-05 Score=84.56 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=54.9
Q ss_pred ceeEEecCCCcc-------------ccHHHHHHHhhhcCcEE-EEEECCCCCchhHH-HHHHHHHHcCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHV-------------NFSDEVTAAMRLCDGVV-LFVDAAEGVMLNTE-RLLKHAVQEKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~-------------~~~~~~~~a~~~~D~~l-~vVD~~~g~~~~~~-~~~~~l~~~~~~~ilvvNKiD~ 279 (1291)
..+.|+||||+. .+...+...++.+|.+| +|+|+..++..++. .+++.+...++|+++|+||+|.
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence 478999999974 23445667888888777 69999999988885 5788888889999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 205 ~~ 206 (299)
T 2aka_B 205 MD 206 (299)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 281
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.59 E-value=9.9e-05 Score=77.56 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=51.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..+.......++.+|++|+|+|+...-..+. ...+..+.. .++|+++|+||+|...
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 378899999999998888889999999999999987543222 222233333 3789999999999864
No 282
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.59 E-value=8e-05 Score=77.79 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=51.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHH---HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++++|+|+...-..+. ..+...++ ..++|+++|.||+|...
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 4478899999999998888888999999999999987533222 22222222 24789999999999864
No 283
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.58 E-value=9e-05 Score=91.44 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccc----eecccccCCCCeEEE
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPV----TLLLPDVKGKNYLMN 473 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~----~~~~~~~~~~~~~~~ 473 (1291)
....+|+++|.+|+|||||+++|.+..-. .... ..-|.++.+... .+.. +.++++..++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~---------------~t~g~~~~~~~~~~~~~v~~-~~~~~~~~~~ 101 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKES---------------QTHGLNVVTKQAPNIKGLEN-DDELKECLFH 101 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTT-CSTTTTCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCC---------------CccceEEEEeccccccceee-cCCCceEEEE
Confidence 34469999999999999999999865311 0000 011222221100 1111 1123578999
Q ss_pred EEeCCCccccccccc--ccccceEEEEecCCCccchhhHhhHHHHHhhc--Cccchhhhhh
Q psy15088 474 IFDTPASPVTLLLPD--VKGKNYLMNIFDTPGMWDIHVRKFSKKAAHAS--AQRSFVEFVL 530 (1291)
Q Consensus 474 liDTpGh~~~~~l~~--~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~--~~~~fv~fil 530 (1291)
+.||||+..+..+.. +..+|++|+|+|+... .....+.......+ +|.++ +.|
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvil--V~N 158 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIV--VMN 158 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEE--EEC
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEE--EEE
Confidence 999999875543322 3467899999998764 33455555555544 56554 445
No 284
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.57 E-value=3.6e-05 Score=92.75 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCccccccCCCceeeecCceeEEecCCCccccHHH--------HHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC
Q psy15088 197 SPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDE--------VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM 268 (1291)
Q Consensus 197 ~as~~~~~~~~~~~ii~~~~~~liDtpG~~~~~~~--------~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~ 268 (1291)
.++.|++.....+.+ ++..+.++||||+.++... ....++.+|++|+|+|+..+...++.++++.+.. +
T Consensus 255 ~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~ 331 (462)
T 3geh_A 255 LPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--R 331 (462)
T ss_dssp CTTCCHHHHHHEEEE-TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--S
T ss_pred CCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--C
Confidence 344555554444443 3778999999999765433 2335788999999999999999999888887754 7
Q ss_pred cEEEEEEccCccc
Q psy15088 269 AITLCVNKIDRLM 281 (1291)
Q Consensus 269 ~~ilvvNKiD~~~ 281 (1291)
|+++|+||+|+..
T Consensus 332 piivV~NK~Dl~~ 344 (462)
T 3geh_A 332 PLILVMNKIDLVE 344 (462)
T ss_dssp CEEEEEECTTSSC
T ss_pred cEEEEEECCCCCc
Confidence 9999999999864
No 285
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.72 E-value=1e-05 Score=86.25 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=52.7
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+..+-..+.. ..+..++.. ++|+++|+||+|...
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 79 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 577999999999988888889999999999999876544443 334445444 789999999999864
No 286
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.56 E-value=8.5e-05 Score=79.28 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=50.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+..|.......++.+|++|+|+|+..+-..+. ...+..+.. .++|+++|+||+|..
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 378999999999888777888999999999999987543322 223333433 378999999999984
No 287
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.55 E-value=6.9e-05 Score=78.79 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=52.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.......++.+|++|||+|+........ ...+..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 3478999999999988778888999999999999987544322 223333433 3789999999999864
No 288
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.71 E-value=1.1e-05 Score=85.98 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=52.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+|+|||||+++|+...- ... ...++.+.....+.+ .+....+.++||||
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~-----------------~~~t~~~~~~~~~~~---~~~~~~l~i~Dt~G 87 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGE-----------------YIPTVFDNYSANVMV---DGKPVNLGLWDTAG 87 (204)
Confidence 34899999999999999999975421 100 011221111111111 22456777999999
Q ss_pred ccccccc--ccccccceEEEEecCCCc
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g 504 (1291)
+..+..+ .....+|++++|+|+...
T Consensus 88 ~~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (204)
T 3th5_A 88 QEDYDRLRPLSYPQTDVFLICFSLVSP 114 (204)
Confidence 9755432 234578999999998765
No 289
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=6.3e-05 Score=78.93 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=51.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH----cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ----EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~----~~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+.+|.......++.+|++|||+|+..+....... .+..+.+ .++|+++|+||+|..
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 47889999999998877888899999999999998764433322 2333433 368999999999985
No 290
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.55 E-value=0.00018 Score=82.14 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=60.0
Q ss_pred ceeEEecCCCccccH-----HHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHHH-----cCCcEEEEEEccCccccc
Q psy15088 215 RNNNKCLPPGHVNFS-----DEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAVQ-----EKMAITLCVNKIDRLMLE 283 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~-----~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~~-----~~~~~ilvvNKiD~~~~~ 283 (1291)
.++.++||||+.+|. ......++.+|++|+|+|+...-..++...| +++.. .++|+++|+||+|....+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~ 131 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD 131 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH
T ss_pred eEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchh
Confidence 478999999999883 3456677899999999999987655554332 22322 279999999999986411
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 284 LKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+-...+....+++..+...+|+
T Consensus 132 ------~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 132 ------KREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTTTC
T ss_pred ------hhhHHHHHHHHHHHHHHHHcCC
Confidence 1111122334555666666653
No 291
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.55 E-value=5e-05 Score=79.89 Aligned_cols=67 Identities=24% Similarity=0.190 Sum_probs=51.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+...-..+. ...+..+++ .++|+++|+||+|...
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 378999999999887777888999999999999987543333 223334443 3789999999999864
No 292
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.55 E-value=0.00016 Score=82.99 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=63.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+|+|||||+++|....- ... ..+++.+.....+.. .+....+.++||||
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~--~~~-----------------~~~t~~~~~~~~~~~---~~~~~~~~l~Dt~G 212 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF--PGE-----------------YIPTVFDNYSANVMV---DGKPVNLGLWDTAG 212 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CCS-----------------CCCCSEEEEEEEEEE---TTEEEEEEEEEECC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC--Ccc-----------------cCCcccceeEEEEEE---CCEEEEEEEEeCCC
Confidence 35899999999999999999985531 110 012222222222222 22456677999999
Q ss_pred ccccccc--ccccccceEEEEecCCCccchhhH--hhHHHHHhh--cCccchhhhhh
Q psy15088 480 SPVTLLL--PDVKGKNYLMNIFDTPGMWDIHVR--KFSKKAAHA--SAQRSFVEFVL 530 (1291)
Q Consensus 480 h~~~~~l--~~~~~ad~~v~vida~~g~~~qt~--~~~~~~~~~--~~~~~fv~fil 530 (1291)
+..+..+ ..+..+|++++|+|+...-+-+.. .+....... ++|.++ +.|
T Consensus 213 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~il--v~n 267 (332)
T 2wkq_A 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL--VGT 267 (332)
T ss_dssp CGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEE--EEE
T ss_pred chhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEE--EEE
Confidence 9765422 345678999999999876433332 233333332 555554 444
No 293
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.55 E-value=0.00026 Score=79.24 Aligned_cols=68 Identities=10% Similarity=-0.031 Sum_probs=50.5
Q ss_pred CceeEEecCCCccccH---HHHHHHhh------hcCcEEEEEECCC-CCchhHHHHHHHHHHc-C----CcEEEEEEccC
Q psy15088 214 TRNNNKCLPPGHVNFS---DEVTAAMR------LCDGVVLFVDAAE-GVMLNTERLLKHAVQE-K----MAITLCVNKID 278 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~---~~~~~a~~------~~D~~l~vVD~~~-g~~~~~~~~~~~l~~~-~----~~~ilvvNKiD 278 (1291)
+.+++++||||+.++. .+....+. .+|++|+|+|... .....+.++++.+++. + +|+++|+||+|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 5589999999998764 33333333 6999999988754 5666777777777653 4 69999999999
Q ss_pred ccc
Q psy15088 279 RLM 281 (1291)
Q Consensus 279 ~~~ 281 (1291)
...
T Consensus 166 l~~ 168 (270)
T 1h65_A 166 FSP 168 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 294
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.54 E-value=2e-05 Score=82.62 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=50.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCC--chhHHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGV--MLNTERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~--~~~~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.++.......++.+|++|+|+|+...- ......+.+.++. .++|+++|+||+|...
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 457899999999887766666788999999999998763 2223333333332 4789999999999864
No 295
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.54 E-value=5.6e-05 Score=77.24 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=50.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+..+.......++.+|++|+|+|+..+..... ...+..+++ .++|+++|+||+|..
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 368899999999888777888999999999999987543322 223333433 378999999999984
No 296
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.54 E-value=3.3e-05 Score=80.66 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=51.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.++.......++.+|++|+|+|+...-..+. ..+...++. .++|+++|+||+|...
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 4578999999999887777788899999999999987643322 222223332 4789999999999864
No 297
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.54 E-value=4.6e-05 Score=79.96 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=51.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHHc---CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQE---KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~---~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+..+-..+. ...+..+++. ++|+++|+||+|...
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 478999999999887777888999999999999987543322 2334445543 789999999999864
No 298
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.53 E-value=0.00012 Score=75.62 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=42.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH-------cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ-------EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~-------~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+..+...++.. .+..+.. .++|+++|+||+|+..
T Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp EEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred EEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 37889999999998887788889999999999998764433322 2222222 5789999999999854
No 299
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.53 E-value=9e-05 Score=83.00 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=51.1
Q ss_pred CceeEEecCCCccccHHH--------HHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC-CcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDE--------VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK-MAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~--------~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~-~~~ilvvNKiD~~~ 281 (1291)
++.++++||||+.+|... .......+|++++|+|+..+ ......+.++.+.+ +|+++|+||+|...
T Consensus 49 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 557899999999876531 22223579999999999885 45666677777888 99999999999753
No 300
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.53 E-value=0.00011 Score=74.51 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=50.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.......++.+|++++|+|+...-..+. ...+..++. .++|+++|+||+|...
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 368899999999988888889999999999999876432222 222333333 3799999999999864
No 301
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.52 E-value=4.9e-05 Score=87.79 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=49.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCC--CCchhHHHHHHHHHHc---CCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAE--GVMLNTERLLKHAVQE---KMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~--g~~~~~~~~~~~l~~~---~~~~ilvvNKiD~~~ 281 (1291)
+.++.|+||||+..|.......++.+|++|||+|+.. .+......+.+.++.. ++|+++|+||+|...
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 4578999999999988888889999999999999954 4444444455555443 889999999999864
No 302
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.52 E-value=5.2e-05 Score=88.93 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=46.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceeccccc------------CCC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV------------KGK 468 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------------~~~ 468 (1291)
.+|+|+|.+|+|||||+++|.+... .+...+ ++|++.....+.+++. ..-
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p-----------------~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~ 84 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA-SAENFP-----------------FCTIDPNESRVPVPDERFDFLCQYHKPASKI 84 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------------------------CCSEEEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cccCCC-----------------ccccCceeEEEEECCccceeeccccCccccc
Confidence 4899999999999999999986632 222111 4444433333322210 001
Q ss_pred CeEEEEEeCCCccccc---------ccccccccceEEEEecCCCc
Q psy15088 469 NYLMNIFDTPASPVTL---------LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 469 ~~~~~liDTpGh~~~~---------~l~~~~~ad~~v~vida~~g 504 (1291)
...+.++||||+.... .+..+..+|+++.|+|+.++
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 3469999999985322 23445688999999999754
No 303
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.52 E-value=8.9e-05 Score=82.50 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=49.7
Q ss_pred CceeEEecCCCccccHH-----HHHHH---hhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSD-----EVTAA---MRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~-----~~~~a---~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+..|.. .+... ...+|++++|+|+... .....++.++.+.++|+++|+||+|...
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 45899999999987642 12122 2589999999999873 2344566778888999999999999864
No 304
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.52 E-value=7.8e-05 Score=80.37 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=55.2
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCcc--ccccccccccccccccCceeeeccc----eeccc---c-c-C
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAE--EKNLRYTDTLFTEQERGVSIKASPV----TLLLP---D-V-K 466 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~--~~~~~~~D~~~~E~erGiTi~~~~~----~~~~~---~-~-~ 466 (1291)
.++++|+|+|++|+|||||+++|+...... ...+. .+..+..|....++ .|++...... ++... . . .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR-FGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT-TTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh-CCCcEEEecCCceeecccHHHHHHHHh
Confidence 456899999999999999999999874321 11110 01111122222221 2444222111 11000 0 0 1
Q ss_pred CCCeEEEEEeCCCcccccccccccccceEEEEecCCCcc
Q psy15088 467 GKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 467 ~~~~~~~liDTpGh~~~~~l~~~~~ad~~v~vida~~g~ 505 (1291)
..+..+.++||||.......... .++.+++|+|+..+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~~~-~~~~~i~vvd~~~~~ 143 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDFDL-GENYRVVMVSVTEGD 143 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGCCC-SCSEEEEEEEGGGCT
T ss_pred cCCCCEEEEeCCCCCCCCchhcc-ccCcEEEEEeCCCcc
Confidence 25678999999995211110001 246788999988763
No 305
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.50 E-value=4e-05 Score=79.72 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=52.3
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+..+-..+.. ..+..+++. ++|+++|+||+|...
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 677999999998877677788999999999999876544443 244555554 899999999999864
No 306
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.50 E-value=6.3e-05 Score=77.73 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=50.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-----HHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-----RLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-----~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++++|+|+...-..... ++++.....++|+++|+||+|...
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3788999999998877777888999999999998874322111 222223345889999999999864
No 307
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.49 E-value=3.7e-05 Score=81.06 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=50.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..+.......++.+|++|+|+|+..+-.-+.. ..+..+. ..++|+++|.||+|...
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 45789999999998876666778899999999999876432221 2222222 25789999999999864
No 308
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=8.3e-05 Score=78.18 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=52.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh-HHHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-TERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~-~~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+..|.......++.+|++|||+|+...-..+ ....+..++. .++|+++|+||+|...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 347899999999999988999999999999999998643322 2233444444 4789999999999864
No 309
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.49 E-value=0.00013 Score=75.11 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=50.8
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH-------cCCcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ-------EKMAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~-------~~~~~ilvvNKiD~~ 280 (1291)
.+.++||||+..+.......++.+|++|+|+|+..+...+... .+..+.. .++|+++|+||+|..
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 7889999999999888888899999999999998765433322 2222222 578999999999986
No 310
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.48 E-value=6.7e-05 Score=80.95 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=51.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHH-HHHHHH--cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERL-LKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+..+...+.... +..+.+ .++|+++|+||+|...
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred EEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 478999999999887777788999999999999998654444322 233333 2889999999999864
No 311
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.48 E-value=4.9e-05 Score=81.74 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=51.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHH---HcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.......++.+|++|+|+|+..+...++..-| ..++ ..++|+++|+||+|...
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 3689999999998876667788999999999999987665554221 2222 34789999999999864
No 312
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.48 E-value=8.9e-05 Score=86.68 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCCcccc---------------cccccccccceEEEEecCCC-cc-chhhHhhHHHHHhhcCccchhhhhh
Q psy15088 468 KNYLMNIFDTPASPVT---------------LLLPDVKGKNYLMNIFDTPG-MW-DIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~---------------~~l~~~~~ad~~v~vida~~-g~-~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
....+.|+||||...+ .....+..+|++++++|+.. +. ..+..++.+.....+.+.++ ++|
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~--V~n 211 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFG--VLT 211 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEE--EEE
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEE--EEe
Confidence 4567999999997432 12233557898999887643 33 33445566666566667654 455
No 313
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.48 E-value=0.00014 Score=74.43 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=44.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.++.......++.+|++|+|+|+..+-..+... .+..+++ .++|+++|+||+|...
T Consensus 56 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp EEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred EEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 6788999999988877777789999999999998754333222 2223332 5789999999999864
No 314
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.48 E-value=8.3e-05 Score=78.99 Aligned_cols=66 Identities=21% Similarity=0.111 Sum_probs=49.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHH-HHHHHH-------cCCcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERL-LKHAVQ-------EKMAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-~~~l~~-------~~~~~ilvvNKiD~~ 280 (1291)
..+.++||||+.+|.......++.+|++|+|+|+..+...+.... +..+.. .++|+++|+||+|..
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 378999999999887666778899999999999987644333222 222221 478999999999986
No 315
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.48 E-value=5.4e-05 Score=78.21 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..+.......++.+|++|+|+|+..+-..+... .+..+.+. ++|+++|+||+|...
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 47889999999988777778899999999999998854333322 22333333 589999999999764
No 316
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.48 E-value=0.00017 Score=76.66 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=52.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-.-+. ...+..+++ .++|+++|+||+|+..
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp EEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 378999999999999888899999999999999887533222 223334443 4689999999999864
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.48 E-value=8.8e-05 Score=75.57 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=50.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.......++.+|++++|+|+...-..+.. ..+..+.. .++|+++|+||+|...
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp EEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred EEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 3788999999998877778889999999999999875432222 22233333 3889999999999864
No 318
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.47 E-value=6.3e-05 Score=79.85 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=48.8
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH------cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ------EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~------~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+..+...+. ...+..+.+ .++|+++|+||+|...
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp EEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 78999999999988888888999999999999987644222 233334443 4789999999999864
No 319
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.46 E-value=6.6e-05 Score=87.68 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=52.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc-----------cC---
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD-----------VK--- 466 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------~~--- 466 (1291)
.+|+|+|.+|+|||||+++|.+.. ..+...+ ++|++.......+++ ..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p-----------------~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYP-----------------FATIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCC-----------------GGGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCC-----------------CceeccceeeEecChHHHHHHHHHhcccccc
Confidence 379999999999999999998763 2111111 112221111111100 00
Q ss_pred --CCCeEEEEEeCCCccccc---------ccccccccceEEEEecCCCc
Q psy15088 467 --GKNYLMNIFDTPASPVTL---------LLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 467 --~~~~~~~liDTpGh~~~~---------~l~~~~~ad~~v~vida~~g 504 (1291)
..+..+.++||||..... .+..+..+|++++|+|+.++
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~ 112 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPD 112 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCC
Confidence 024679999999985321 22345688999999999874
No 320
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.46 E-value=7.8e-05 Score=77.68 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=46.9
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHH----HHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHA----VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l----~~~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++++|+|+...-..+... .+..+ ...++|+++|+||+|...
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 5788999999998888888899999999999998743222211 22222 234789999999999863
No 321
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.45 E-value=5.2e-05 Score=80.56 Aligned_cols=68 Identities=24% Similarity=0.203 Sum_probs=46.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh--HHHHHHHHH---HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN--TERLLKHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~--~~~~~~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+..|.......++.+|++|+|+|+...-.-+ ...+.+.++ ..++|+++|+||+|...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 457899999999887665666788999999999998753222 222222222 25799999999999864
No 322
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.44 E-value=3.5e-05 Score=80.03 Aligned_cols=67 Identities=18% Similarity=0.074 Sum_probs=47.2
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCc-----hhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVM-----LNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~-----~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-. ....++.+.+...++|+++|+||+|...
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 367899999999886556677889999999999986322 2222333333445899999999999853
No 323
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.44 E-value=7.1e-05 Score=80.40 Aligned_cols=65 Identities=23% Similarity=0.120 Sum_probs=51.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH-------cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ-------EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~-------~~~~~ilvvNKiD~~~ 281 (1291)
.++.|+||||+.+|.......++.+|++|||+|+......+.. ..++.. .++|+++|+||+|+..
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~--~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 4789999999999988888999999999999999875433322 233332 4689999999999864
No 324
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.43 E-value=9.5e-05 Score=93.27 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=74.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCC-----cccCCcc----------------cccccccccc--cc----------cc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHP-----GYRQPAE----------------EKNLRYTDTL--FT----------EQ 447 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~-----i~~~~~~----------------~~~~~~~D~~--~~----------E~ 447 (1291)
..|+++|..++|||||+|+|++..-. ++...+. ..+..+.|.. .. ..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~ 131 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 131 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCC
Confidence 38999999999999999999986421 0000000 0000111110 00 01
Q ss_pred ccCceeeeccceecccccCCCCeEEEEEeCCCccccc---------------ccc-cccccceEEEEecCCCccchhhH-
Q psy15088 448 ERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTL---------------LLP-DVKGKNYLMNIFDTPGMWDIHVR- 510 (1291)
Q Consensus 448 erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~~~---------------~l~-~~~~ad~~v~vida~~g~~~qt~- 510 (1291)
.+|++-+...+.+.++ ....+.|+||||..... ... ....+|++++|+|+..++..++.
T Consensus 132 ~~~is~~~i~l~I~~P----~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 132 NKGISPVPINLRVYSP----HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp TTCCCSCCEEEEEEET----TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred CCcccccceEEEEecC----CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 2344444444444443 45679999999974210 000 11467899999999999877776
Q ss_pred hhHHHHHhhcCccchhhhhh
Q psy15088 511 KFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 511 ~~~~~~~~~~~~~~fv~fil 530 (1291)
.+.......+.|.++ .+|
T Consensus 208 ~ll~~L~~~g~pvIl--VlN 225 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIG--VIT 225 (772)
T ss_dssp HHHHHHCTTCSSEEE--EEE
T ss_pred HHHHHHHhcCCCEEE--EEe
Confidence 688887777888775 455
No 325
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.43 E-value=0.0001 Score=76.02 Aligned_cols=67 Identities=16% Similarity=0.043 Sum_probs=50.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH-----cCCc-EEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ-----EKMA-ITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~-----~~~~-~ilvvNKiD~~~ 281 (1291)
.++.++||||+..|.......++.+|++|+|+|+..+-..+.. ..+..+++ .+.| +++|+||+|...
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 4789999999999887788889999999999999875443322 22333333 2677 688999999864
No 326
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.43 E-value=0.00016 Score=74.71 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=50.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|..++|||||+++|+...-... . .+. |.+. . ..+.+ .+....+.+.||||+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~-----~t~----------~~~~-~--~~~~~---~~~~~~l~i~Dt~G~ 64 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVL--E-----KTE----------SEQY-K--KEMLV---DGQTHLVLIREEAGA 64 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCC--S-----SCS----------SSEE-E--EEEEE---TTEEEEEEEEECSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc--C-----CCc----------ceeE-E--EEEEE---CCEEEEEEEEECCCC
Confidence 4899999999999999999987532110 0 011 1111 0 11111 124567899999998
Q ss_pred ccccccccccccceEEEEecCCCc
Q psy15088 481 PVTLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 481 ~~~~~l~~~~~ad~~v~vida~~g 504 (1291)
.... ....+|++++|+|+...
T Consensus 65 ~~~~---~~~~~d~~ilv~D~~~~ 85 (178)
T 2iwr_A 65 PDAK---FSGWADAVIFVFSLEDE 85 (178)
T ss_dssp CCHH---HHHHCSEEEEEEETTCH
T ss_pred chhH---HHHhCCEEEEEEECcCH
Confidence 6532 23457899999998764
No 327
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=5.8e-05 Score=79.47 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=52.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-.-+.. ..+..+++. ++|+++|+||+|...
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 3688999999999887777788999999999999875433332 344555555 899999999999864
No 328
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.43 E-value=5.2e-05 Score=81.69 Aligned_cols=91 Identities=33% Similarity=0.621 Sum_probs=67.6
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSGR 670 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~r 670 (1291)
+|++||||++..|+..|... ....+.+++++++.+.+++|+..|.. ....|
T Consensus 80 ~~i~dg~~~~~~~~~~l~~~---~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r 156 (214)
T 1e4v_A 80 GFLLDGFPRTIPQADAMKEA---GINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR 156 (214)
T ss_dssp CEEEESCCCSHHHHHHHHHT---TCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred CEEEeCCCCCHHHHHHHHhc---CCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccC
Confidence 68999999987655443210 01234678999999999999987752 12368
Q ss_pred CCCCHHHHHHHHhhccccccceEEeecch-----hhhhhhchhHH
Q psy15088 671 ADDNEESLKKRISVYNTETMPIIKFFEAK-----NLVKRFNAEKS 710 (1291)
Q Consensus 671 ~dd~~e~i~~rl~~~~~~~~PVl~~sa~k-----~~~~~~~g~~~ 710 (1291)
.|++.+.+++|+..|...+.|++.+|..+ +.+..++|.++
T Consensus 157 ~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~ 201 (214)
T 1e4v_A 157 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP 201 (214)
T ss_dssp TTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCC
Confidence 89999999999999999999999988765 35666776543
No 329
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.43 E-value=0.00014 Score=76.99 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=50.4
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+...-..... ..+..+. ..++|+++|+||+|...
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred EEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 788999999999998888899999999999998864322221 1222222 23789999999999864
No 330
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=84.96 Aligned_cols=115 Identities=19% Similarity=0.139 Sum_probs=54.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
-+|+|+|+.|+|||||+++|+....... .+.+....+..++++++.....+.+ .+....++++||||+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~---------~~~~~~~~~~~~ti~~~~~~~~~~~---~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPE---------RVIPGAAEKIERTVQIEASTVEIEE---RGVKLRLTVVDTPGY 105 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC------------------------CEEEEEEEEC-------CEEEEEEEEC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCC---------CcccCCCcccCCceeEEEEEEEeec---CCcccceEEEEeccc
Confidence 4899999999999999999876532110 0111111222234444433333333 122347999999999
Q ss_pred cc-------cccccc------------c----------cccceEEEEecC-CCccchhhHhhHHHHHhhcCccchhhhhh
Q psy15088 481 PV-------TLLLPD------------V----------KGKNYLMNIFDT-PGMWDIHVRKFSKKAAHASAQRSFVEFVL 530 (1291)
Q Consensus 481 ~~-------~~~l~~------------~----------~~ad~~v~vida-~~g~~~qt~~~~~~~~~~~~~~~fv~fil 530 (1291)
.+ +..+.. . ..+++++++|+. ..++...+..+.+.. ..++|.++ ++|
T Consensus 106 gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIl--V~N 182 (361)
T 2qag_A 106 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVP--VIA 182 (361)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEE--EEE
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEE--EEE
Confidence 32 222211 0 123467777775 556776666555544 24556554 444
No 331
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.42 E-value=5.6e-05 Score=78.36 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=49.8
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-..+.. ..+..++.. ++|+++|+||+|...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 3677999999999887777888999999999999875443332 234445543 789999999999864
No 332
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.41 E-value=0.00021 Score=73.32 Aligned_cols=66 Identities=20% Similarity=0.131 Sum_probs=47.7
Q ss_pred CceeEEecCCCccccH-----HHH-HHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFS-----DEV-TAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~-----~~~-~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|. ..+ ...+ ..+|++++|+|+..- ......+..+++.++|+++|.||+|...
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 4578999999998763 112 2222 479999999998762 2333455566677999999999999853
No 333
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.41 E-value=4.1e-05 Score=81.72 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=53.5
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+..+...+.. ..+..+++. ++|+++|+||+|...
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 79 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 567999999999887777789999999999999986555544 344555555 899999999999864
No 334
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.41 E-value=6.5e-05 Score=79.96 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=50.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|||+|+..+...+... .+..++. .++|+++|+||+|+..
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 37899999999988777777889999999999998754433322 2233333 3689999999999864
No 335
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.41 E-value=0.00014 Score=76.99 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=52.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+++|||||+++|.+...... .. .+++.+.....+.+ .+....+.+.||||
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~-----------------~~~~~~~~~~~~~~---~~~~~~l~i~Dt~g 81 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSA-HE-----------------PENPEDTYERRIMV---DKEEVTLVVYDIWE 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGG-GT-----------------TTSCTTEEEEEEEE---TTEEEEEEEECCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCcc-CC-----------------CCcccceEEEEEEE---CCEEEEEEEEecCC
Confidence 35999999999999999999975432211 00 02222221122222 22456778889999
Q ss_pred cccccc-cc--cccccceEEEEecCCCc
Q psy15088 480 SPVTLL-LP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~-l~--~~~~ad~~v~vida~~g 504 (1291)
...+.. +. ....+|++++|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~ 109 (195)
T 3cbq_A 82 QGDAGGWLRDHCLQTGDAFLIVFSVTDR 109 (195)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CccchhhhHHHhhccCCEEEEEEECCCH
Confidence 964432 22 23467999999998754
No 336
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.40 E-value=6.8e-05 Score=79.71 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=52.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-..+. ...+..+++. ++|+++|+||+|...
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 378899999999887777778899999999999886433222 3445555554 899999999999864
No 337
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00013 Score=77.90 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=51.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+...-..+.. ..+..+++ .++|+++|+||+|...
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 3788999999999988888889999999999999875432221 22233332 4688999999999864
No 338
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.39 E-value=7.3e-05 Score=78.56 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=48.1
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCC
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTp 478 (1291)
...+|+++|..++|||||+++|.+..-..... ....+++. .+ .+..+.++|||
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~---------------~~~~~~~~-------~~-----~~~~~~l~Dt~ 99 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---------------SQEPLSAA-------DY-----DGSGVTLVDFP 99 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CC-----CCTTCSEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccc---------------cCCCceee-------ee-----cCCeEEEEECC
Confidence 34699999999999999999998764211000 00001111 11 45678899999
Q ss_pred Cccccccc------ccccccceEEEEecCC
Q psy15088 479 ASPVTLLL------PDVKGKNYLMNIFDTP 502 (1291)
Q Consensus 479 Gh~~~~~l------~~~~~ad~~v~vida~ 502 (1291)
|+..+... ..+..+|++++|+|+.
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 99654311 1122378999999988
No 339
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.00017 Score=76.03 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=51.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-.... ...+..+.+ .++|+++|+||+|...
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 378899999999998888889999999999999886432222 223333333 3789999999999864
No 340
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=5.5e-05 Score=78.62 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=47.4
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHH----HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
+.++.++||||+.++.......++.+|++++|+|+..+-..+. ...+..+. ..++|+++|+||+|...
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 4578999999998887777778899999999999987643222 22223332 25789999999999864
No 341
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.36 E-value=0.00027 Score=78.65 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=49.7
Q ss_pred CceeEEecCCCccccHH---HHHHHhh------hcCcEEEEEECCC-CCchhHHHHHHHHHHc-C----CcEEEEEEccC
Q psy15088 214 TRNNNKCLPPGHVNFSD---EVTAAMR------LCDGVVLFVDAAE-GVMLNTERLLKHAVQE-K----MAITLCVNKID 278 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~---~~~~a~~------~~D~~l~vVD~~~-g~~~~~~~~~~~l~~~-~----~~~ilvvNKiD 278 (1291)
+..++|+||||+.+|.. .....+. .+|++|+|+|... +....+..+++.+++. + +|+++|+||+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 56899999999988742 2333333 7899999987654 4666677777777764 2 48999999999
Q ss_pred cc
Q psy15088 279 RL 280 (1291)
Q Consensus 279 ~~ 280 (1291)
..
T Consensus 163 l~ 164 (262)
T 3def_A 163 FS 164 (262)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.36 E-value=0.00015 Score=75.89 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=41.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++++|+|+...-..++.. .+..+.. .++|+++|+||+|...
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 36889999999998888888999999999999998754333322 2223332 3789999999999864
No 343
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.34 E-value=0.00033 Score=76.01 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=49.0
Q ss_pred CceeEEecCCCccc------c---HHHHHHHhhhcCcEEEEEECCCCCch---hHHHHHHHHHHc--CCcEEEEEEccCc
Q psy15088 214 TRNNNKCLPPGHVN------F---SDEVTAAMRLCDGVVLFVDAAEGVML---NTERLLKHAVQE--KMAITLCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~------~---~~~~~~a~~~~D~~l~vVD~~~g~~~---~~~~~~~~l~~~--~~~~ilvvNKiD~ 279 (1291)
+..+.++||||+.+ . ...+......+|++|+|+|+...... .....+..++.. ++|+++|+||+|.
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 45789999999943 1 11223336788999999999876542 234556666665 8999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 155 ~~ 156 (228)
T 2qu8_A 155 CN 156 (228)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.34 E-value=0.00031 Score=74.42 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=52.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|+.++|||||+++|.+........ + .-|++.... .+.+ .+....+.+.||||
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~---------------t~~~~~~~~--~i~~---~g~~~~~~i~Dt~g 63 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-S---------------TIGVEFATR--SIQV---DGKTIKAQIWDTAG 63 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----C---------------CCSCEEEEE--EEEE---TTEEEEEEEEECSS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-C---------------ccceeEEEE--EEEE---CCEEEEEEEEECCC
Confidence 4589999999999999999998764321100 0 002222222 2222 12346778899999
Q ss_pred cccccccc--cccccceEEEEecCCCc
Q psy15088 480 SPVTLLLP--DVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l~--~~~~ad~~v~vida~~g 504 (1291)
+..++.+. ....++++++|+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (199)
T 2f9l_A 64 QERYRRITSAYYRGAVGALLVYDIAKH 90 (199)
T ss_dssp GGGTTCCCHHHHTTCSEEEEEEETTCH
T ss_pred chhhhhhhHHHHhcCCEEEEEEECcCH
Confidence 97654332 23467888999998765
No 345
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.33 E-value=0.00016 Score=91.63 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=56.1
Q ss_pred ceeEEecCCCccc---cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHH-HHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVN---FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK-HAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~---~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~-~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.||||||+.+ ....+...++.||++|+|+|+..+.+..+...+. .++..++|+++|+||+|...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 3689999999865 3455678889999999999999999888887765 56667899999999999864
No 346
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00026 Score=74.64 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=48.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHH----HHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHA----VQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l----~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+ .......++.+|++|+|+|+...-.-.. ...+..+ ...++|+++|+||+|...
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 4788999999988 5567788899999999999886322111 1122222 235889999999999864
No 347
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.31 E-value=4.7e-05 Score=80.88 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=49.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHH----HcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAV----QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~----~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.......++.+|++|+|+|+...-..+... .+..+. ..++|+++|+||+|+..
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 347889999999988777778889999999999998643222221 222222 24789999999999864
No 348
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.31 E-value=0.00023 Score=89.88 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=54.4
Q ss_pred ceeEEecCCCccc-------------cHHHHHHHh-hhcCcEEEEEECCCCCchhHH-HHHHHHHHcCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVN-------------FSDEVTAAM-RLCDGVVLFVDAAEGVMLNTE-RLLKHAVQEKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~-------------~~~~~~~a~-~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~~~~~~ilvvNKiD~ 279 (1291)
..+.||||||+.. +..-+...+ ..+|++|+|||+..++..++. .+++++...++|+|+|+||+|.
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDl 229 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 229 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTS
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCccc
Confidence 3688999999754 111222233 588999999999999999998 7999999999999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 230 v~ 231 (772)
T 3zvr_A 230 MD 231 (772)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 349
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=9.2e-05 Score=79.05 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=52.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-..+. ...+..+++. ++|+++|+||+|...
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 368899999999887777778899999999999886432222 3445555554 899999999999864
No 350
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.30 E-value=0.00027 Score=83.04 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=54.6
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccc---------cCC---
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPD---------VKG--- 467 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------~~~--- 467 (1291)
-..|+|+|++|+|||||+++|.+.....+...+ ++|++.....+.+++ +..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p-----------------~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~ 82 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP-----------------YATIDPEEAKVAVPDERFDWLCEAYKPKSR 82 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS-----------------SCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCC-----------------ceeecceeeeeeeCCcchhhhhhhcccccc
Confidence 348999999999999999999985432332222 444444333333311 000
Q ss_pred CCeEEEEEeCCCcccc---------cccccccccceEEEEecCCCc
Q psy15088 468 KNYLMNIFDTPASPVT---------LLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~---------~~l~~~~~ad~~v~vida~~g 504 (1291)
-+..+.++||||.... ..+..+..+|.++.|+|+.++
T Consensus 83 v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d 128 (392)
T 1ni3_A 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDD 128 (392)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCT
T ss_pred cCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1246899999997321 122334567889999998763
No 351
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.29 E-value=8e-05 Score=79.65 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=50.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|||+|+...-..+.. ..+..++.. ++|+++|+||+|...
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 3788999999998877777789999999999999875433332 344455554 899999999999864
No 352
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.29 E-value=0.00016 Score=77.70 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=38.0
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+...-.-+.. ..+..+++ .++|+++|+||+|...
T Consensus 83 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred EEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 688999999999888788889999999999999875433332 23334443 3789999999999864
No 353
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.28 E-value=0.00013 Score=77.48 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=50.6
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+..+...+... .+..++. .++|+++|+||+|...
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 47899999999887766778899999999999998754433322 2233332 4789999999999864
No 354
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.28 E-value=0.00025 Score=82.88 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=52.4
Q ss_pred ceeEEecCCCcccc-------------HHHHHHHhhhcCcEEEEEECC-CCC-chhHHHHHHHHHHcCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVNF-------------SDEVTAAMRLCDGVVLFVDAA-EGV-MLNTERLLKHAVQEKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~~-------------~~~~~~a~~~~D~~l~vVD~~-~g~-~~~~~~~~~~l~~~~~~~ilvvNKiD~ 279 (1291)
..+.|+||||+.++ ...+...++.+|++|+|||+. ... ......+++.+...++|+|+|+||+|.
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCcc
Confidence 46899999999876 455678899999999999864 232 344466677777778999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 216 ~~ 217 (360)
T 3t34_A 216 MD 217 (360)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 355
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.27 E-value=8.5e-05 Score=80.37 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=49.4
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH---cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|||+|+..+...+... .+..++. .++|+++|+||+|+..
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 37899999999988776777889999999999998765433322 2333443 3789999999999864
No 356
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.23 E-value=0.00014 Score=76.98 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=50.5
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+...-..+.. ..+..++.. ++|+++|.||+|...
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred EEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 678999999988876666678899999999999875443332 233444443 889999999999864
No 357
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.23 E-value=8e-05 Score=86.41 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=52.0
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCC------cccCCc---ccccccccccccccc----ccC-------------c
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHP------GYRQPA---EEKNLRYTDTLFTEQ----ERG-------------V 451 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~------i~~~~~---~~~~~~~~D~~~~E~----erG-------------i 451 (1291)
.+...|+|+|++|+|||||+++|.+.... ++.... ..++....|....+. .++ +
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 34568999999999999999999765321 100000 001111112111111 111 1
Q ss_pred eeeecc--ceecccccCCCCeEEEEEeCCCcccccccccccccceEEEEecCCCc
Q psy15088 452 SIKASP--VTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 452 Ti~~~~--~~~~~~~~~~~~~~~~liDTpGh~~~~~l~~~~~ad~~v~vida~~g 504 (1291)
|.+... ..+.| +++.++||||||+..... .....+|.+++|+|+..+
T Consensus 134 ~~~~~~~~~~~~~-----~~~~i~liDTpG~~~~~~-~~~~~aD~vl~Vvd~~~~ 182 (341)
T 2p67_A 134 SQRARELMLLCEA-----AGYDVVIVETVGVGQSET-EVARMVDCFISLQIAGGG 182 (341)
T ss_dssp HHHHHHHHHHHHH-----TTCSEEEEEEECCTTHHH-HHHTTCSEEEEEECC---
T ss_pred HHHHHHHHHHhhc-----cCCCEEEEeCCCccchHH-HHHHhCCEEEEEEeCCcc
Confidence 111100 01124 678999999999854321 124678999999998765
No 358
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.22 E-value=0.00042 Score=70.68 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=42.3
Q ss_pred ceeEEecCCCccccHH-HHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSD-EVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~-~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.++.. .....++.+|++++|+|+...-..+.. ..+..+.+ .++|+++|+||+|...
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 3678999999988765 334557889999999998873222111 22222322 2789999999999863
No 359
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.21 E-value=0.00015 Score=73.89 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=36.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++++|+|....-..+. ...+..+.+ .++|+++|+||+|+..
T Consensus 49 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 49 ASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 368899999999988777788899999999999886432221 122333333 4789999999999864
No 360
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.20 E-value=0.00019 Score=75.07 Aligned_cols=87 Identities=14% Similarity=0.305 Sum_probs=47.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+|+|..++|||||+++|.+......... ....|+ +.....+.+....++...+.+.||||..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~~--------------~~t~g~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ--------------SATVGI--DVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-------------------------CSE--EEEEEEC---------CEEEEEEECSHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCCc--------------ceeccE--EeEEeeeccccCCCCceEEEEEecCCCH
Confidence 799999999999999999986421111000 000122 1111111111111256789999999986
Q ss_pred ccccccc--ccccceEEEEecCCCc
Q psy15088 482 VTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
.+..+.. ...++++++|+|+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKG 92 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGC
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcc
Confidence 5443322 2356788888898765
No 361
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.20 E-value=0.00015 Score=78.11 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=52.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|||+|+...-.... ...+..+++. ++|+++|.||+|+..
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred EEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 378899999999887777778899999999999987544433 2344555554 789999999999864
No 362
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.20 E-value=0.00047 Score=73.71 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=61.9
Q ss_pred CCCeEEEEEeeccCCCCceeEEEEEEEeeEecCCCEEEEcccCCCCCCcccceEEEEceEEEEecCceeeeceeeCCCeE
Q psy15088 790 EGRLMVHSSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWV 869 (1291)
Q Consensus 790 ~~pl~~~V~K~~~~~~~~~~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~~~~~V~~l~~~~g~~~~~v~~a~aGnIv 869 (1291)
++|+.+.|..++. +.|. +..|||.+|++++||+|.+++. +...+|++|+. ..+++++|.||+.|
T Consensus 4 ~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~---------~~~~~V~~I~~----~~~~~~~A~aGd~V 67 (204)
T 3e1y_E 4 GSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPN---------KHNVEVLGILS----DDVETDTVAPGENL 67 (204)
T ss_dssp ---CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTT---------TEEEEEEEECS----SSSCBSEECTTSEE
T ss_pred CCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCC---------CCEEEEEEEEE----CCEEeEEECCCCEE
Confidence 5789999988876 3444 8999999999999999999863 35678888863 34689999999999
Q ss_pred EE--ccCCC-cccccceeecc
Q psy15088 870 LI--EGIDQ-PIVKTSTITDL 887 (1291)
Q Consensus 870 ~I--~Gl~~-~~~k~~Tl~~~ 887 (1291)
++ .|++. -+.++.++++.
T Consensus 68 ~l~L~gi~~~di~rG~vl~~~ 88 (204)
T 3e1y_E 68 KIRLKGIEEEEILPGFILCDP 88 (204)
T ss_dssp EEEEEESSSSCCCTTCEEBCS
T ss_pred EEEEcCCCHHHCccceEEECC
Confidence 99 78763 34456677653
No 363
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.19 E-value=0.00013 Score=76.08 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=50.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|+|+|+...-..+.. .....+++ .++|+++|.||+|...
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 3688999999998876666778999999999999875433332 22334444 3789999999999864
No 364
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.18 E-value=0.00011 Score=77.73 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=46.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHHc---CCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQE---KMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~~---~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.......++.+|++|+|+|+...-.-+... .+..+... ++|+++|+||+|...
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 36889999999888776777889999999999998854433322 22333332 789999999999864
No 365
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.00041 Score=72.31 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=48.1
Q ss_pred CceeEEecCCCccccHH-----HH-HHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSD-----EV-TAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~-----~~-~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+|.. .+ ...+ ..+|++++|+|+.. .......+..+++.++|+++|.||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 45789999999988731 11 2222 35999999999875 23344556667778999999999999864
No 366
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.17 E-value=0.00031 Score=78.69 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=47.7
Q ss_pred ceeEEecCCCccccHH-----HH-HHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSD-----EV-TAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~-----~~-~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.. .+ ...+ ..+|++|+|+|+... .....+..++.+.++|+++|+||+|...
T Consensus 49 ~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp TTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred CeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 3688999999987741 12 2223 359999999999762 2334455677778999999999999864
No 367
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.16 E-value=0.00019 Score=83.32 Aligned_cols=61 Identities=18% Similarity=0.018 Sum_probs=41.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.++||||||+.++... ..+.+|++|+|+|+..|...+.... ...++|.++|+||+|+..
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDN 208 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTC
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCC
Confidence 568999999999876544 4699999999999987643222111 113678999999999863
No 368
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.15 E-value=0.00074 Score=74.74 Aligned_cols=66 Identities=17% Similarity=0.067 Sum_probs=47.4
Q ss_pred ceeEEecCCCccccH------HHHHHHhhhcCcEEEEEECCCCCchhHHHH-----HHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFS------DEVTAAMRLCDGVVLFVDAAEGVMLNTERL-----LKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~------~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~-----~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+.+.+|||||..++. ..+..++.. +++++|||+..+..+.+..- .......++|+++|+||+|...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 478899999987653 223345566 89999999988776665431 1223445899999999999864
No 369
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.0005 Score=70.47 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=42.3
Q ss_pred eeEEecCCCcccc--HHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHHc----CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNF--SDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQE----KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~--~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~~----~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+..+ .......++.+|++++|+|....-..+. ...+..+.+. ++|+++|+||+|...
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 6889999999873 3334455678999999999876432222 2233444443 789999999999864
No 370
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.10 E-value=0.00023 Score=86.95 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=52.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH--HHHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT--ERLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~--~~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+..|.......++.+|++|+|+|+...-.-+. ..+...++. .++|+|+|+||+|...
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 5589999999999988777888999999999999987643322 233333332 4899999999999864
No 371
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.09 E-value=0.00061 Score=71.87 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=47.9
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
.+|+++|.+|+|||||+++|++....+..... .++.+.....+.+ .+....+.++||+|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~l~~~Dt~~~ 66 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-----------------VLGEDTYERTLMV---DGESATIILLDMWEN 66 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----G-----------------GGCTTEEEEEEEE---TTEEEEEEEECCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-----------------ccceeEEEEEEEE---CCeEEEEEEEEeccC
Confidence 48999999999999999999875433321111 1111111111222 123456788999997
Q ss_pred cc-cccccc--ccccceEEEEecCCC
Q psy15088 481 PV-TLLLPD--VKGKNYLMNIFDTPG 503 (1291)
Q Consensus 481 ~~-~~~l~~--~~~ad~~v~vida~~ 503 (1291)
.- ++.+.. ...+|++++|+|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~dv~~ 92 (192)
T 2cjw_A 67 KGENEWLHDHCMQVGDAYLIVYSITD 92 (192)
T ss_dssp ----CTTGGGHHHHCSEEEEEEETTC
T ss_pred cchhhhHHHhhcccCCEEEEEEECCC
Confidence 53 232222 235688999988765
No 372
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.06 E-value=0.00021 Score=76.35 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=50.4
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+|.......++.+|++|||+|+...-..... ..+..+++ .++|+++|.||+|...
T Consensus 76 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 3688999999998876666778999999999999875433322 23344444 3789999999999864
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.04 E-value=0.0011 Score=69.37 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=46.7
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH----cCCcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ----EKMAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~----~~~~~ilvvNKiD~~ 280 (1291)
.+.++||||+..|. .++.+|++++|+|+...-..+. ...+..++. .++|+++|.||+|..
T Consensus 68 ~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 68 LLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 67889999998876 6788999999999987654444 334444444 468999999999985
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.99 E-value=0.001 Score=69.28 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=46.6
Q ss_pred eeEEecCCCcc-----------ccHHHHHHH----hhhcCcEEEEEECCC-----------CCchhHHHHHHHHHHcCCc
Q psy15088 216 NNNKCLPPGHV-----------NFSDEVTAA----MRLCDGVVLFVDAAE-----------GVMLNTERLLKHAVQEKMA 269 (1291)
Q Consensus 216 ~~~liDtpG~~-----------~~~~~~~~a----~~~~D~~l~vVD~~~-----------g~~~~~~~~~~~l~~~~~~ 269 (1291)
.+.++||||+. .|....... ...++++++|+|+.. +...++.++.+.+...++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 67899999953 333332222 556778888888754 3344556677777888999
Q ss_pred EEEEEEccCccc
Q psy15088 270 ITLCVNKIDRLM 281 (1291)
Q Consensus 270 ~ilvvNKiD~~~ 281 (1291)
+++|+||+|...
T Consensus 125 iilv~nK~Dl~~ 136 (190)
T 2cxx_A 125 TIVAVNKLDKIK 136 (190)
T ss_dssp EEEEEECGGGCS
T ss_pred eEEEeehHhccC
Confidence 999999999864
No 375
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.99 E-value=0.00079 Score=78.40 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=50.3
Q ss_pred ceeEEecCCCccc-------------cHHHHHHHh-hhcCcEEEEEECCCCCchhHHH-HHHHHHHcCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVN-------------FSDEVTAAM-RLCDGVVLFVDAAEGVMLNTER-LLKHAVQEKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~-------------~~~~~~~a~-~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~~~~~~ilvvNKiD~ 279 (1291)
..+.|+||||+.. +...+...+ ..+|++|+|+|+..++..++.. +++.+...++|+++|+||+|+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDL 209 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccc
Confidence 4789999999743 222333444 3455677788998888888774 888888889999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 210 ~~ 211 (353)
T 2x2e_A 210 MD 211 (353)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 376
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.98 E-value=0.00027 Score=82.13 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=24.6
Q ss_pred CCeEEEEEeCCCcccccccccccccceEEEEecCCCcc
Q psy15088 468 KNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~~~l~~~~~ad~~v~vida~~g~ 505 (1291)
.++.+.|+||||.... .......+|.+++|+|+..+.
T Consensus 165 ~~~~~iliDT~Gi~~~-~~~l~~~~d~vl~V~d~~~~~ 201 (349)
T 2www_A 165 AGYDIILIETVGVGQS-EFAVADMVDMFVLLLPPAGGD 201 (349)
T ss_dssp TTCSEEEEECCCC--C-HHHHHTTCSEEEEEECCC---
T ss_pred CCCCEEEEECCCcchh-hhhHHhhCCEEEEEEcCCcch
Confidence 5788999999997311 122345789999999988663
No 377
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00067 Score=72.96 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=49.3
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+++|.+|+|||||+++|++....+..... .+ |.+... ..+.+ .+....+.++||+|
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~----~~-----------g~d~~~--~~i~~---~~~~~~l~~~Dt~g 96 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE----VL-----------GEDTYE--RTLMV---DGESATIILLDMWE 96 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------C-----------CTTEEE--EEEEE---TTEEEEEEEECCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC----cc-----------ceeeEE--EEEEE---CCeeeEEEEeecCC
Confidence 458999999999999999999865433221111 00 111111 11222 12445678899999
Q ss_pred ccc-ccccc--cccccceEEEEecCCC
Q psy15088 480 SPV-TLLLP--DVKGKNYLMNIFDTPG 503 (1291)
Q Consensus 480 h~~-~~~l~--~~~~ad~~v~vida~~ 503 (1291)
... +..+. -...+|++++|+|...
T Consensus 97 ~~~~~~~l~~~~~~~a~~~ilVydvt~ 123 (211)
T 2g3y_A 97 NKGENEWLHDHCMQVGDAYLIVYSITD 123 (211)
T ss_dssp TTHHHHHHHHCCCCCCSEEEEEEETTC
T ss_pred CcchhhhHHHHHHhhCCEEEEEEECCC
Confidence 753 22221 1235688899988764
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.96 E-value=0.00015 Score=78.75 Aligned_cols=87 Identities=25% Similarity=0.527 Sum_probs=62.5
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc--------------------------CCCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA--------------------------EGSGR 670 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~--------------------------~~~~r 670 (1291)
+|++||||++..|+..+... ...+.+++++++.+.+.+|+..|.. ....|
T Consensus 86 ~~vid~~~~~~~~~~~l~~~----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r 161 (227)
T 1zd8_A 86 SWLLDGFPRTLPQAEALDRA----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR 161 (227)
T ss_dssp CEEEESCCCSHHHHHHHHTT----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred CEEEeCCCCCHHHHHHHHHh----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence 68999999876554322211 1234578999999999999987641 12246
Q ss_pred CCCCHHHHHHHHhhccccccceEEeecchhhhhhhch
Q psy15088 671 ADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNA 707 (1291)
Q Consensus 671 ~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g 707 (1291)
.+++.+.+++|+..|...+.|++.+|...+.+..+++
T Consensus 162 ~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~ 198 (227)
T 1zd8_A 162 EDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSG 198 (227)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeC
Confidence 6778899999999999999998888765555555655
No 379
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.90 E-value=0.00067 Score=71.05 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=45.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH-HHHHHHH------cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER-LLKHAVQ------EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~-~~~~l~~------~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+..|.. +...++.+|++|+|+|+...-.-+... .+..+++ .++|+++|.||+|...
T Consensus 69 ~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp EEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred EEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 3788999999987754 456889999999999988643222221 2233332 4899999999999864
No 380
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.90 E-value=0.00039 Score=81.06 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.0
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhc
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
..+.+.|+|+|++|+|||||+++|....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999997653
No 381
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.84 E-value=0.0013 Score=67.70 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=43.9
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHH-HHHHH------cCCcEEEEEEccCcc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL-KHAVQ------EKMAITLCVNKIDRL 280 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~-~~l~~------~~~~~ilvvNKiD~~ 280 (1291)
++.++||||+.. ...++.+|++|+|+|+...-..+....| +++.. .++|+++|.||+|..
T Consensus 55 ~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 55 LVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 688999999986 3467889999999999875443333322 12332 378999999999984
No 382
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.83 E-value=0.00043 Score=83.92 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=54.6
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhcCCcccCCccccc----cccccccc-cccccCceeeeccc-------------e
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKN----LRYTDTLF-TEQERGVSIKASPV-------------T 459 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~----~~~~D~~~-~E~erGiTi~~~~~-------------~ 459 (1291)
.+.++|+|+|++|+||||+++.|.......-........ ....|.+. .....|+++-.... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346799999999999999999999543210000000000 00111110 11122343222100 1
Q ss_pred ecccccCCCCeEEEEEeCCCcccc-----ccc---ccccccceEEEEecCCCccc
Q psy15088 460 LLLPDVKGKNYLMNIFDTPASPVT-----LLL---PDVKGKNYLMNIFDTPGMWD 506 (1291)
Q Consensus 460 ~~~~~~~~~~~~~~liDTpGh~~~-----~~l---~~~~~ad~~v~vida~~g~~ 506 (1291)
+.| +++.++||||||+... ..+ ..+-.+|.+++|+|+..+.+
T Consensus 179 ~~~-----~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 179 FKN-----ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp HHH-----TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred HHH-----CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence 122 5789999999998421 111 10115688999999988753
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.83 E-value=0.0022 Score=67.37 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=50.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
..+|+|+|..++|||||+++|.+........ + .-|++..+. .+.+ .+....+.+.||||
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~---------------t~~~~~~~~--~i~~---~g~~~~~~i~Dt~g 87 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-S---------------TIGVEFATR--SIQV---DGKTIKAQIWDTAG 87 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-C---------------CCSEEEEEE--EEEE---TTEEEEEEEEEECS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-C---------------ccceEEEEE--EEEE---CCEEEEEEEEECCC
Confidence 4589999999999999999998764321100 0 002222222 2222 12344567799999
Q ss_pred ccccccccc--ccccceEEEEecCCCc
Q psy15088 480 SPVTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 480 h~~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
...++.+.. ...++.+++|+|....
T Consensus 88 ~~~~~~~~~~~~~~~~~~i~v~d~~~~ 114 (191)
T 1oix_A 88 LERYRAITSAYYRGAVGALLVYDIAKH 114 (191)
T ss_dssp CCSSSCCCHHHHTTCCEEEEEEETTCH
T ss_pred CcchhhhhHHHhhcCCEEEEEEECcCH
Confidence 865543322 2345778888887654
No 384
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.79 E-value=0.001 Score=77.56 Aligned_cols=61 Identities=23% Similarity=0.101 Sum_probs=43.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+.||||||... .....+..+|++|+|+|+..+-..+... .. -..+|.++|+||+|...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~~--~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--KG--VLELADIVVVNKADGEH 231 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--TT--SGGGCSEEEEECCCGGG
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--Hh--HhhcCCEEEEECCCCcC
Confidence 56889999999653 2334469999999999987664433221 11 13469999999999863
No 385
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.79 E-value=0.00037 Score=79.81 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=52.0
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH--HHHHHHHHc--CCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE--RLLKHAVQE--KMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~--~~~~~l~~~--~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+|.......++.+|++|+|+|+..+...++. ..+..++.. ++|+++|+||+|...
T Consensus 204 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred EEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 567999999999887777788999999999999886554443 233445544 899999999999863
No 386
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.77 E-value=0.00029 Score=74.24 Aligned_cols=77 Identities=40% Similarity=0.750 Sum_probs=54.5
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
++++||||++..++..|...+ ...+.++++++|.+++.+|+.+|+. ...|.+++.+.+++|+..+.....|++..|
T Consensus 90 ~vi~d~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~e~~~~R~~~R~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 165 (196)
T 2c95_A 90 GFLIDGYPREVQQGEEFERRI---GQPTLLLYVDAGPETMTQRLLKRGE-TSGRVDDNEETIKKRLETYYKATEPVIAFY 165 (196)
T ss_dssp CEEEESCCCSHHHHHHHHHHT---CCCSEEEEEECCHHHHHHHHHHHHT-SSSCGGGSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCHHHHHHHHHccCC-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999998765554444322 1234678999999999999998863 234667788889999987776666654444
Q ss_pred c
Q psy15088 697 E 697 (1291)
Q Consensus 697 a 697 (1291)
.
T Consensus 166 ~ 166 (196)
T 2c95_A 166 E 166 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.76 E-value=0.0034 Score=66.24 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=46.0
Q ss_pred eeEEecCCCccccHH-HHHHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSD-EVTAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~-~~~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
.+.+.||||...+.. -....++.+|++|||+|+...-.-.. ...+..+++ .++|+++|.||+|+..
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred EEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 577889999987754 33456788999999999876322111 122233333 3789999999999864
No 388
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.73 E-value=0.00084 Score=77.63 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=49.4
Q ss_pred ceeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCCC--Cc--hhHHHHHHHHHH-----cCCcEEEEEEccC
Q psy15088 215 RNNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAEG--VM--LNTERLLKHAVQ-----EKMAITLCVNKID 278 (1291)
Q Consensus 215 ~~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~g--~~--~~~~~~~~~l~~-----~~~~~ilvvNKiD 278 (1291)
..|.++||||+.+ +..+....++.+|++|+|||+... .. .+...+...+++ .++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 5799999999754 445667778889999999999651 22 222344455555 3789999999999
Q ss_pred ccc
Q psy15088 279 RLM 281 (1291)
Q Consensus 279 ~~~ 281 (1291)
...
T Consensus 286 l~~ 288 (342)
T 1lnz_A 286 MPE 288 (342)
T ss_dssp STT
T ss_pred CCC
Confidence 863
No 389
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.68 E-value=0.0024 Score=68.94 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=51.7
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|+++|..++|||||+++++...-. ....+ + -|...... .+. ..+....+.|.||||..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~-----T----------ig~d~~~k--~~~---~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFD-NTYQA-----T----------IGIDFLSK--TMY---LEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--------------------------CEEE--EEE---CSSCEEEEEEECCSCTT
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCC-CCcCC-----c----------cceEEEEE--EEE---ecceEEEEEEEECCCch
Confidence 8999999999999999999854211 00000 0 01111111 111 22356788999999998
Q ss_pred ccccccc--ccccceEEEEecCCCc
Q psy15088 482 VTLLLPD--VKGKNYLMNIFDTPGM 504 (1291)
Q Consensus 482 ~~~~l~~--~~~ad~~v~vida~~g 504 (1291)
.++.+.. ...++++++|+|....
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~ 98 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNV 98 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCH
T ss_pred hhhhHHHHHhccccEEEEEeecchh
Confidence 7765543 3477899999988764
No 390
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.67 E-value=0.00047 Score=73.24 Aligned_cols=77 Identities=49% Similarity=0.997 Sum_probs=54.0
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
+|++||||++..++..+...+. ..+.++++++|.+++.+|+.+|+.. .+|.+++.+.+++|+..|.....|++..+
T Consensus 98 ~~i~dg~~~~~~~~~~~~~~~~---~~~~~i~l~~~~e~~~~Rl~~R~~~-~~~~~~~~e~~~~r~~~~~~~~~~~~~~~ 173 (203)
T 1ukz_A 98 KFLIDGFPRKMDQAISFERDIV---ESKFILFFDCPEDIMLERLLERGKT-SGRSDDNIESIKKRFNTFKETSMPVIEYF 173 (203)
T ss_dssp EEEEETCCCSHHHHHHHHHHTC---CCSEEEEEECCHHHHHHHHHHHHHH-HCCTTCSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHhcccc-CCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 6889999998665543332211 1345789999999999999987531 24667888999999887776666665544
Q ss_pred c
Q psy15088 697 E 697 (1291)
Q Consensus 697 a 697 (1291)
.
T Consensus 174 ~ 174 (203)
T 1ukz_A 174 E 174 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 391
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.63 E-value=0.0011 Score=81.71 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=53.8
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC--CcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK--MAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~--~~~ilvvNKiD~~~ 281 (1291)
+..|.++||||+..|.......++.+|++|+|+|+..+ ......+..+++.+ +|+|+|+||+|...
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 45799999999988876666778899999999999875 44555667777755 99999999999864
No 392
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.61 E-value=0.0006 Score=78.82 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=21.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhh
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
..++|+|++|+|||||+++|.+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 393
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.60 E-value=0.00089 Score=79.09 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=24.0
Q ss_pred eeEEecCCCccccH-------HHHHHHhhhcCcEEEEEECCCC
Q psy15088 216 NNNKCLPPGHVNFS-------DEVTAAMRLCDGVVLFVDAAEG 251 (1291)
Q Consensus 216 ~~~liDtpG~~~~~-------~~~~~a~~~~D~~l~vVD~~~g 251 (1291)
.+.++||||+.... .+....++.||++++|||+..+
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 68999999986532 2223557999999999999886
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.59 E-value=0.00085 Score=71.23 Aligned_cols=75 Identities=31% Similarity=0.663 Sum_probs=54.2
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
++++||||++..++..|...+.+. ...+.++++++|.+++.+|+..|+ |.+++.+.+++|+..|.....|+..+
T Consensus 100 ~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~-----r~~~~~e~~~~r~~~~~~~~~~~~~~ 174 (201)
T 2cdn_A 100 GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG-----RADDTDDVILNRMKVYRDETAPLLEY 174 (201)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC-----CTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 689999999876665554433321 113467899999999999999884 56678889999998877666665544
Q ss_pred e
Q psy15088 696 F 696 (1291)
Q Consensus 696 s 696 (1291)
+
T Consensus 175 ~ 175 (201)
T 2cdn_A 175 Y 175 (201)
T ss_dssp T
T ss_pred h
Confidence 4
No 395
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.49 E-value=0.0029 Score=70.63 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=58.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
|++|+|+.|+|||||+++|.+........... .+... ......++ +.+...+ .+-...++++||||..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~-~g~~i---~~~~~~~~-------i~~v~q~-~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWN-REEKI---PKTVEIKA-------IGHVIEE-GGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------C---CCCCSCCE-------EEESCC-----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcccc-CCccc---Ccceeeee-------eEEEeec-CCCcCCceEEechhhh
Confidence 89999999999999999999875432111100 00000 00111112 1222211 1112367999999972
Q ss_pred cc-----------------------cc-------cccccccceEEEEecCC-CccchhhHhhHHHHHhhcCccc
Q psy15088 482 VT-----------------------LL-------LPDVKGKNYLMNIFDTP-GMWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 482 ~~-----------------------~~-------l~~~~~ad~~v~vida~-~g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
.. .. .-.+.+|.++++++|.. .|.++.+..+.+..... .+.+
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI 144 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNII 144 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEE
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEE
Confidence 10 00 11223567888888854 77899998887776654 4444
No 396
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.44 E-value=0.0046 Score=72.09 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=47.1
Q ss_pred CceeEEecCCCccc-----c---HHHHHHHhhhcCcEEEEEECCCCC--c-hhHHHHHHHHHH---cCCcEEEEEEccCc
Q psy15088 214 TRNNNKCLPPGHVN-----F---SDEVTAAMRLCDGVVLFVDAAEGV--M-LNTERLLKHAVQ---EKMAITLCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~-----~---~~~~~~a~~~~D~~l~vVD~~~g~--~-~~~~~~~~~l~~---~~~~~ilvvNKiD~ 279 (1291)
+..+.++||||+.. . ...+...+..||++++|+|+..+. . .+...+.+.++. .++|+|+|.||+|.
T Consensus 225 g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 225 NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK 304 (364)
T ss_dssp TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG
T ss_pred CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC
Confidence 67899999999832 1 123455688999999999998764 1 122222333443 47899999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 305 ~~ 306 (364)
T 2qtf_A 305 IN 306 (364)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 397
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.43 E-value=0.0034 Score=73.21 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred eeEEecCCCccccHHH--------------HHHHhhhc-------------CcEEEEEEC-CCCCchhHHHHHHHHHHcC
Q psy15088 216 NNNKCLPPGHVNFSDE--------------VTAAMRLC-------------DGVVLFVDA-AEGVMLNTERLLKHAVQEK 267 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~--------------~~~a~~~~-------------D~~l~vVD~-~~g~~~~~~~~~~~l~~~~ 267 (1291)
.++++||||+.++... ....++.+ |+++++|+. ..++...+..+++.+. .+
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~ 174 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK 174 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cC
Confidence 6899999999543221 11333333 357788875 7788888887777764 68
Q ss_pred CcEEEEEEccCccc
Q psy15088 268 MAITLCVNKIDRLM 281 (1291)
Q Consensus 268 ~~~ilvvNKiD~~~ 281 (1291)
+|+|+|+||+|...
T Consensus 175 ~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 175 VNIVPVIAKADTLT 188 (361)
T ss_dssp SCEEEEEECCSSSC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999999864
No 398
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.0062 Score=70.86 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=45.9
Q ss_pred CceeEEecCCCccccH--------HHHHHHhh-hcCcEEEEEECCCCC--chhH-HHHHHHHHH-c-CCcEEEEEEccCc
Q psy15088 214 TRNNNKCLPPGHVNFS--------DEVTAAMR-LCDGVVLFVDAAEGV--MLNT-ERLLKHAVQ-E-KMAITLCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~--------~~~~~a~~-~~D~~l~vVD~~~g~--~~~~-~~~~~~l~~-~-~~~~ilvvNKiD~ 279 (1291)
+..+.++||||+.++. .+...++. .+|++|+|+|+..+- ..+. ..++..+.. . ++|+++|+||+|.
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 3468899999986532 23333443 599999999987643 3333 334444443 2 8999999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 293 ~~ 294 (357)
T 2e87_A 293 AD 294 (357)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 399
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.42 E-value=0.0031 Score=74.71 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=50.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
..|+|+|++|+|||||+++|.+....+ . |+ ..+|+......+.+. ....+.+.||||+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i-~-----------~~------~ftTl~p~~G~V~~~----~~~~~~l~DtpGl 215 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI-A-----------PY------PFTTLSPNLGVVEVS----EEERFTLADIPGI 215 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE-C-----------CC------TTCSSCCEEEEEECS----SSCEEEEEECCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc-c-----------Cc------ccceecceeeEEEec----CcceEEEEecccc
Confidence 379999999999999999997553211 0 10 123333222223331 2378899999998
Q ss_pred cc----cc-----ccccccccceEEEEecCC
Q psy15088 481 PV----TL-----LLPDVKGKNYLMNIFDTP 502 (1291)
Q Consensus 481 ~~----~~-----~l~~~~~ad~~v~vida~ 502 (1291)
.. .. .++.+..++.++.++|+.
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc
Confidence 32 11 122345688999999987
No 400
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.42 E-value=0.0048 Score=65.42 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=51.5
Q ss_pred eeEEecCCCccc----------cHHHH---HHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVN----------FSDEV---TAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~----------~~~~~---~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||||+.+ |...+ ....+.+|++++|+|+..+....+.++.+++...++|++++.||+|...
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 567899999853 22222 2233678999999999998888777888888889999999999999763
No 401
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.36 E-value=0.004 Score=68.83 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.1
Q ss_pred ceEEEEccc---------CCChhHHHHHHHhh
Q psy15088 401 RNVALVGHL---------HHGKTTMIDCLIRQ 423 (1291)
Q Consensus 401 rnI~iiG~~---------~~GKsTl~~~ll~~ 423 (1291)
.+|+++|.+ |+|||||+++|+..
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 489999999 99999999999863
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.29 E-value=0.0042 Score=74.00 Aligned_cols=26 Identities=35% Similarity=0.264 Sum_probs=23.0
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
..++|+|+|++|+||||++..|....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998764
No 403
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.11 E-value=0.0034 Score=65.34 Aligned_cols=67 Identities=13% Similarity=-0.026 Sum_probs=46.9
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchh--HHHHHHHHHH--cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN--TERLLKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~--~~~~~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
..+.+.||||...|..-....++.+|++++|+|..++.... -...+..++. .++|+++|.||+|...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 56 LVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred eEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 47889999998877655556678899999999988763211 1112222222 3788999999999863
No 404
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.11 E-value=0.0078 Score=71.17 Aligned_cols=107 Identities=20% Similarity=0.131 Sum_probs=56.5
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPA 479 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpG 479 (1291)
+-|+||+|+.|+|||||++.|++..-. +. .... ...+.+++.. .+.+.+ .+-...++++||||
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~----g~-----~~~~-----~~~~~~~~~i--~~v~Q~-~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE----GE-----PATH-----TQPGVQLQSN--TYDLQE-SNVRLKLTIVSTVG 104 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC---------------------CCSSCEEEEE--EEEEEC---CEEEEEEEEEEC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc----CC-----cCCC-----CCccceEeeE--EEEeec-Cccccccchhhhhh
Confidence 347999999999999999999876310 00 0000 0113333322 222211 01123689999999
Q ss_pred cccc-----------------------------cccccccc--cce-EEEEecCCCccchhhHhhHHHHHhhcCccc
Q psy15088 480 SPVT-----------------------------LLLPDVKG--KNY-LMNIFDTPGMWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 480 h~~~-----------------------------~~l~~~~~--ad~-~v~vida~~g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
.... +++..... +|+ +.+++|+..++.+.+..+.+... .+.+.+
T Consensus 105 ~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI 180 (427)
T 2qag_B 105 FGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNII 180 (427)
T ss_dssp CCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEE
T ss_pred hhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEE
Confidence 7321 01112222 233 55677888888888888777764 444544
No 405
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.10 E-value=0.0046 Score=74.92 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=46.0
Q ss_pred CceeEEecCCCccc----cHHHHHHHh--hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcE-EEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVN----FSDEVTAAM--RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAI-TLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~----~~~~~~~a~--~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~ 281 (1291)
++.+.||||||+.. +..++.... ..+|.++||||+..|.. +..+++.+.+. +|+ ++|+||+|...
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 56789999999873 333433222 27899999999999864 44455554443 785 89999999863
No 406
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0076 Score=70.27 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=49.4
Q ss_pred CceeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
+.+|.|+||||... ...++...++.||++++|||+.+.+.. .+.+...+.. .++|.++++||+|...
T Consensus 118 ~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 118 GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 66899999999864 235688999999999999999875432 2223333333 3578999999999753
No 407
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.00 E-value=0.0051 Score=70.18 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=47.4
Q ss_pred eeEEecCCCccccHH---HHHHHhhhcCcEEEEEECCCCCchhHHHH----HHHHHH--cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSD---EVTAAMRLCDGVVLFVDAAEGVMLNTERL----LKHAVQ--EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~---~~~~a~~~~D~~l~vVD~~~g~~~~~~~~----~~~l~~--~~~~~ilvvNKiD~~~ 281 (1291)
++.+.||||+.+|.. ....-.+.|+++|+|+|..+. ......- +..+++ .++|+++|.||+|+..
T Consensus 47 ~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 47 DLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp CEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 788899999999853 345668999999999999876 2222222 222222 3789999999999864
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.99 E-value=0.0031 Score=69.62 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.0
Q ss_pred cceEEEEcccCCChhHHHHHHHhh
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
...+++.|+.|+|||||++.|...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 457889999999999999999844
No 409
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.97 E-value=0.014 Score=69.03 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
+|+|+|+.|+|||||+++|++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998764
No 410
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.87 E-value=0.0097 Score=70.88 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.3
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhh
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
..++.-|+|+|.+++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456788999999999999999999976
No 411
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.79 E-value=0.013 Score=62.99 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=49.3
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHH---HcCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAV---QEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~---~~~~~~ilvvNKiD~~~ 281 (1291)
++.|.||+|...|..-...-.+.+|++|+|.|...--.-+.. ..+..++ ..++|++||.||+|+..
T Consensus 63 ~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 63 RLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp EEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred EEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 688999999999988788889999999999998764322221 1222232 24689999999999864
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.55 E-value=0.0008 Score=72.93 Aligned_cols=93 Identities=24% Similarity=0.439 Sum_probs=68.3
Q ss_pred ceeecCCCCccCccchHHHHHHH-HHHHHHhhhcCCCchHHHHHHhhccc----------------------------CC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRRCLKRGA----------------------------EG 667 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e-~~~l~~v~~ld~~~e~l~~R~l~rg~----------------------------~~ 667 (1291)
++++||||++..|+..+...+.. ....+.++++++|.+++.+|+.+|+. ..
T Consensus 79 ~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l 158 (223)
T 2xb4_A 79 GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGAL 158 (223)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBE
T ss_pred eEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccc
Confidence 78999999987666555443221 11234688999999999999998863 12
Q ss_pred CCCCCCCHH-HHHHHHhhccccccceEE---eecc-----hhhhhhhchhH
Q psy15088 668 SGRADDNEE-SLKKRISVYNTETMPIIK---FFEA-----KNLVKRFNAEK 709 (1291)
Q Consensus 668 ~~r~dd~~e-~i~~rl~~~~~~~~PVl~---~sa~-----k~~~~~~~g~~ 709 (1291)
..|.||+.+ .+++|+..|...+.||.. +|.. .+.+..++|.+
T Consensus 159 ~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~ 209 (223)
T 2xb4_A 159 SARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEG 209 (223)
T ss_dssp ECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTS
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCC
Confidence 346677888 999999999999999998 8865 44456666653
No 413
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=95.53 E-value=0.025 Score=60.11 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=95.3
Q ss_pred CCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeecc
Q psy15088 1101 EPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDA 1180 (1291)
Q Consensus 1101 epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~~ 1180 (1291)
.-+.+|.+.+..+-- -+.-|+|-++.+-..++..|+..++..-..+...+.|.++...+|.|...|.+..+.|++.+
T Consensus 93 ~~l~nv~vVVtRyfG---GikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~ 169 (217)
T 1vi7_A 93 SGVGEITAVVVRYYG---GILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSD 169 (217)
T ss_dssp HTCCSEEEECCEECC---SCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCEEEEEEEEeC---CceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceE
Confidence 357888888887632 23456778999999999999999999999999999999999999999999999999999877
Q ss_pred ccCCCCcEEEEEecccccccCchHHHhhccccceEe
Q psy15088 1181 PVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFC 1216 (1291)
Q Consensus 1181 ~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~ 1216 (1291)
.. +...++..+|..+.-.|...|+..|+|++.+
T Consensus 170 y~---~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 170 YQ---AFVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp ES---SSEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred ec---CCEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 63 3588899999999989999999999999853
No 414
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.47 E-value=0.0053 Score=71.24 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=49.5
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC-----------CchhHHHHHHHHHH----cCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG-----------VMLNTERLLKHAVQ----EKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g-----------~~~~~~~~~~~l~~----~~~~~ilvvNKiD~ 279 (1291)
.++.+.||||+..|..-...-.+.++++|||+|..+- -.......++.+.. .++|+|||.||+|.
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCc
Confidence 4788999999998887777778999999999998762 11222233333333 47899999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 273 ~~ 274 (353)
T 1cip_A 273 FE 274 (353)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 415
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.47 E-value=0.027 Score=64.22 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=51.5
Q ss_pred eEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCcc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASP 481 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~ 481 (1291)
+|.++|..++|||||+.++....-.... ..-+.|+.....++ .....+.|.||||..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~-----------------~~~~~Tig~~~~~v------~~~v~LqIWDTAGQE 57 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDT-----------------LYLESTSNPSLEHF------STLIDLAVMELPGQL 57 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGG-----------------TTCCCCCSCCCEEE------CSSSCEEEEECCSCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCcc-----------------ceecCeeeeeeEEE------ccEEEEEEEECCCch
Confidence 4789999999999999886543211000 00133333222222 134679999999998
Q ss_pred cccc--c---ccccccceEEEEecCCCcc
Q psy15088 482 VTLL--L---PDVKGKNYLMNIFDTPGMW 505 (1291)
Q Consensus 482 ~~~~--l---~~~~~ad~~v~vida~~g~ 505 (1291)
.+++ + .-...|+++|+|+|....+
T Consensus 58 rf~~~~l~~~~yyr~a~~~IlV~Ditd~~ 86 (331)
T 3r7w_B 58 NYFEPSYDSERLFKSVGALVYVIDSQDEY 86 (331)
T ss_dssp SSCCCSHHHHHHHTTCSEEEEECCCSSCT
T ss_pred hccchhhhhhhhccCCCEEEEEEECCchH
Confidence 7652 1 2245789999999998763
No 416
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.40 E-value=0.042 Score=64.88 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=63.2
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcCCcccCCccccccccccccccccccCceeeeccceecccccCCCCeEEEEEeCCCc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~~i~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh 480 (1291)
..+||+|+.|+|||||+++|.+..... .+.. ..+.....+ +|. .+.. .....+++.|+||.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI-----~~~g~~~t~-~~~---------v~q~--~~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEE--EGAA-----KTGVVEVTM-ERH---------PYKH--PNIPNVVFWDLPGI 130 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTS--TTSC-----CCCC----C-CCE---------EEEC--SSCTTEEEEECCCG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcc--CceE-----EECCeecce-eEE---------eccc--cccCCeeehHhhcc
Confidence 489999999999999999999743211 1110 011000001 121 1111 01125789999997
Q ss_pred ccc-------cccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccchhhhhhhHHHHHHHHhhCC
Q psy15088 481 PVT-------LLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGD 543 (1291)
Q Consensus 481 ~~~-------~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~fv~fil~~i~k~~d~~~~~ 543 (1291)
... .....+...+..+. ++... .+.|...+++.....++|.++ .++.|=.-++|.....
T Consensus 131 ~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~l--V~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 131 GSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYF--VRTKVDSDITNEADGE 196 (413)
T ss_dssp GGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEE--EECCHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEE--EEecCcccccCccccc
Confidence 311 11112222343333 44432 577777777777777776665 4555544446655443
No 417
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.38 E-value=0.015 Score=61.29 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=48.1
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.+.+.||||+..+........+.+|++++|+|.......+.. ..+..+++ .+.|+++++||+|...
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp EEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 577899999988765556677889999999998875543332 22233333 4678999999999864
No 418
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.18 E-value=0.0071 Score=70.41 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=43.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCC---------C--chhHHHHHHHHHH----cCCcEEEEEEccC
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEG---------V--MLNTERLLKHAVQ----EKMAITLCVNKID 278 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g---------~--~~~~~~~~~~l~~----~~~~~ilvvNKiD 278 (1291)
+.++.++||||+..|......-.+.++++|||+|..+- . .......+..+.. .++|+|||.||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 34788999999988877666777899999999998861 1 1122233333332 3689999999999
Q ss_pred ccc
Q psy15088 279 RLM 281 (1291)
Q Consensus 279 ~~~ 281 (1291)
...
T Consensus 280 L~~ 282 (362)
T 1zcb_A 280 LLE 282 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 863
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.13 E-value=0.01 Score=70.80 Aligned_cols=27 Identities=26% Similarity=0.145 Sum_probs=23.2
Q ss_pred cccceEEEEcccCCChhHHHHHHHhhc
Q psy15088 398 HLIRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 398 ~~irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
...+.|+++|+.++||||++..|....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998554
No 420
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.03 E-value=0.016 Score=66.59 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=49.0
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCC---------CC--chhHHHHHHHHHH----cCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAE---------GV--MLNTERLLKHAVQ----EKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~---------g~--~~~~~~~~~~l~~----~~~~~ilvvNKiD~ 279 (1291)
.++.+.||+|...|..-...-.+.++++|||+|..+ .. .......++.+.. .++|++||.||+|.
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL 240 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchh
Confidence 378899999999888877788899999999999862 11 1122233333332 47899999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 241 ~~ 242 (340)
T 4fid_A 241 FE 242 (340)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 421
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=95.00 E-value=0.035 Score=57.73 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=93.9
Q ss_pred CCCceeeEEEEEEeeeecCCCCCCcCcHHHHHHHHHHHHHHhCCCceeccEEEEEEEecccchhHHHHHHhccCcEEeec
Q psy15088 1100 EEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQD 1179 (1291)
Q Consensus 1100 ~epv~gv~~~l~d~~~~~~~~~~~~~qii~~~r~~~~~a~l~a~p~LlEPi~~~eI~~p~~~lg~V~~~L~~RRG~I~~~ 1179 (1291)
+.-+.+|.+.+..+-- -+.-|+|-++.+-..++..|+..+...-..+...+.|.++...+|.|...|.+.. .|++.
T Consensus 80 ~~~l~nv~vVVtRyfG---Gi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYFG---GVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEECC---SSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEeC---CcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 4568899999987632 2345667788999999999999999999999999999999999999999999888 88876
Q ss_pred cccCCCCc-EEEEEecccccccCchHHHhhccccceEe
Q psy15088 1180 APVPGSPL-YTIKAFIPAIDSFGFETDLRTHTQGQAFC 1216 (1291)
Q Consensus 1180 ~~~~gt~~-~~I~a~lPv~esfgf~~~LRs~T~G~a~~ 1216 (1291)
+.. +. ..++..+|..+.-.|...|+..|+|++.+
T Consensus 156 ~y~---~~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYT---PEGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEE---TTEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEc---CCeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 653 23 88899999999989999999999999854
No 422
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.51 E-value=0.021 Score=67.87 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=22.2
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
+.+.|+++|.+++||||++..|....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998543
No 423
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.45 E-value=0.068 Score=60.39 Aligned_cols=64 Identities=19% Similarity=0.075 Sum_probs=45.0
Q ss_pred CceeEEecCCCccc--cHHHHH------HHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc-EEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVN--FSDEVT------AAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~--~~~~~~------~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~ 280 (1291)
++.+.+|||||... ....+. .++..+|.+++|+|+..| .+....++...+ +.+ ..+|+||+|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 45788999999877 433322 355679999999999875 334444444444 577 77889999975
No 424
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.25 E-value=0.015 Score=62.11 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=40.5
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.+|||+|..+-.... . ..++.+++|+|+..|... .+.++...++|.++|+||+|...
T Consensus 108 ~~d~iiidt~G~~~~~~~~--~-~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVDF--D-LGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp TCSEEEEEEEEBSSGGGGC--C-CSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHH
T ss_pred CCCEEEEeCCCCCCCCchh--c-cccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCc
Confidence 4578899999942111000 0 146889999999987432 33344456789999999999853
No 425
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.25 E-value=0.027 Score=65.19 Aligned_cols=60 Identities=22% Similarity=0.070 Sum_probs=37.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..+.++||||+..-. ......+|++++|+|+..|...+. +.. .-..+|.++|+||+|+.
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~--i~~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG--IKR--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH--hHH--HHHhcCCEEEEeeecCC
Confidence 5678999999975322 234679999999999987743221 111 11467899999999986
No 426
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.12 E-value=0.025 Score=66.46 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCC-------C--Cch--hHHHHHHHHHH----cCCcEEEEEEccC
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAE-------G--VML--NTERLLKHAVQ----EKMAITLCVNKID 278 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~-------g--~~~--~~~~~~~~l~~----~~~~~ilvvNKiD 278 (1291)
+.++.+.||+|...|..-...-.+.++++|||+|..+ . ... .....++.+.. .++|+|||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3478899999999888777777889999999999876 0 111 12223333332 3679999999999
Q ss_pred ccc
Q psy15088 279 RLM 281 (1291)
Q Consensus 279 ~~~ 281 (1291)
+..
T Consensus 296 L~~ 298 (402)
T 1azs_C 296 LLA 298 (402)
T ss_dssp HHH
T ss_pred hhh
Confidence 753
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.053 Score=58.02 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=41.7
Q ss_pred eeEEecCCCccccHHHH-HHHhhhcCcEEEEEECCCCCchhH-HHHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEV-TAAMRLCDGVVLFVDAAEGVMLNT-ERLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~-~~a~~~~D~~l~vVD~~~g~~~~~-~~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||+|.......+ ..-.+.+|++|+|+|...--.-+. ...+..+++ .++|+|||.||+|+..
T Consensus 88 ~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 88 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp EEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred EEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 56789999987632112 222466899999999765221111 122233432 3789999999999864
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.81 E-value=0.094 Score=62.40 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=43.0
Q ss_pred CceeEEecCCCccccHHHHHHH------hhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC-c-EEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAA------MRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM-A-ITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a------~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~-~-~ilvvNKiD~~ 280 (1291)
++.+.+|||||........... +..+|.++||+|+..|. .....++... .++ | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCc
Confidence 5678999999987643333222 22589999999998874 2233333322 246 6 78899999975
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.67 E-value=0.1 Score=61.89 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=44.3
Q ss_pred CceeEEecCCCccccH----HHH--HHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFS----DEV--TAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~----~~~--~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+.||||||..... .++ +.++..+|.++||+||..|- .....++...+.-....+|+||+|...
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 3578899999975432 222 23344579999999999873 334444555544455678999999863
No 430
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.66 E-value=0.025 Score=65.53 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=47.7
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECC-------C--CCch--hHHHHHHHHHH----cCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAA-------E--GVML--NTERLLKHAVQ----EKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~-------~--g~~~--~~~~~~~~l~~----~~~~~ilvvNKiD~ 279 (1291)
.++.+.||+|...|..-...-.+.+|++|||+|.. + .... .....++.+.. .++|+|||.||+|+
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL 262 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcch
Confidence 47889999999988877777788999999999976 1 1111 12223333332 46899999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 263 ~~ 264 (354)
T 2xtz_A 263 FE 264 (354)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 431
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.50 E-value=0.11 Score=54.60 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=51.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC-----CcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK-----MAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~-----~~~ilvvNKiD~~ 280 (1291)
.+.+.+||||+.. ...+..++..||.+|+++.....- .....+++.+++.+ .++.+|+||+|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 3568899999976 456788999999999999987766 77777888887653 5778999999964
No 432
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.48 E-value=0.1 Score=57.48 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=50.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEE-EEEEccCc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAIT-LCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~i-lvvNKiD~ 279 (1291)
.+.+.|||||+..........++..+|.+|+|+.....-.......++.+++.+++++ +|+|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 4578899999976533223334457999999998877666667778888888899987 88999985
No 433
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.43 E-value=0.039 Score=63.05 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=47.3
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECC-------CC--Cc--hhHHHHHHHHHH----cCCcEEEEEEccCc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAA-------EG--VM--LNTERLLKHAVQ----EKMAITLCVNKIDR 279 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~-------~g--~~--~~~~~~~~~l~~----~~~~~ilvvNKiD~ 279 (1291)
.++.+.||+|...|..-...-.+.++++|||+|.. +. .. ......++.+.. .++|++||.||+|.
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 47889999999887766666788999999999765 21 11 112233333332 46899999999998
Q ss_pred cc
Q psy15088 280 LM 281 (1291)
Q Consensus 280 ~~ 281 (1291)
..
T Consensus 247 ~~ 248 (327)
T 3ohm_A 247 LE 248 (327)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 434
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.31 E-value=0.2 Score=59.23 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=43.9
Q ss_pred ceeEEecCCCccc-------cHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH-----cCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVN-------FSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ-----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~-------~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~-----~~~~~ilvvNKiD~~~ 281 (1291)
..+.+.||||+.+ +.......++.+|.+|+|+|+......+-....+++.. .++|.++|+||+|...
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 5789999999854 22344566778999999999861111111112222222 3789999999999863
No 435
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=93.31 E-value=0.17 Score=47.99 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=38.0
Q ss_pred eEEEEEEEeeEecCCCEEEEcccCCCCCCcccc-eEEEEceEEEEecCceeeeceeeCCCeEEEc
Q psy15088 809 FQVLARVMSGTLHAGQEVRVLGENYSLMDEEDS-RILTVGRLWIYEARYKVEVNRVPAGNWVLIE 872 (1291)
Q Consensus 809 ~ia~~RV~sGtL~~G~~v~v~~~~~~~~~~~~~-~~~~V~~l~~~~g~~~~~v~~a~aGnIv~I~ 872 (1291)
.+.+|||.+|+|++|+.| |. . ...+|.++.. +.+++++|.+||.|++.
T Consensus 49 pvivGrVe~G~LK~G~~V----Pg--------~~~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 49 DVIIGTVESGMIGVGFKV----KG--------PSGIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EEEEEEEEEEEEETTCEE----EC--------SSCEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred CeeEEEEeEEEEcCCCCc----CC--------CceEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 478889999999999998 32 1 3566777663 56789999999999884
No 436
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.27 E-value=0.23 Score=58.76 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=42.0
Q ss_pred cCcEEEEEECC-CCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 239 CDGVVLFVDAA-EGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 239 ~D~~l~vVD~~-~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
+|++|++++.. .|+.+.+..+++.+.. ++|+|+|+||+|... .. .+....+.+...+...++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~------~~----ev~~~k~~i~~~~~~~~i 201 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT------PE----ECQQFKKQIMKEIQEHKI 201 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSC------HH----HHHHHHHHHHHHHHHHTC
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCcc------HH----HHHHHHHHHHHHHHHcCC
Confidence 34466666665 6999999888888875 899999999999863 11 233344555555555553
No 437
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.22 E-value=0.11 Score=61.66 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=44.9
Q ss_pred CceeEEecCCCccc------cHHHHHH--HhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVN------FSDEVTA--AMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~------~~~~~~~--a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
++.+.+|||||... +..++.. +....|.++||+|+..|- ....+++...+.-.+..+++||+|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEecccccc
Confidence 45788999999754 3444332 222459999999999873 344455555544466889999999863
No 438
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.13 E-value=0.022 Score=62.86 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=28.4
Q ss_pred hcCcEEEEEECCCC--CchhHH-HHHHHH----HHcCCcEEEEEEccCcc
Q psy15088 238 LCDGVVLFVDAAEG--VMLNTE-RLLKHA----VQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 238 ~~D~~l~vVD~~~g--~~~~~~-~~~~~l----~~~~~~~ilvvNKiD~~ 280 (1291)
.||++|+|+|+... -.-+.. ..+..+ ...++|+++|.||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 222221 122222 23579999999999985
No 439
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.94 E-value=0.041 Score=65.26 Aligned_cols=25 Identities=32% Similarity=0.138 Sum_probs=21.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhc
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
.+.|+++|+.++||||++..|....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997553
No 440
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.91 E-value=0.093 Score=54.75 Aligned_cols=66 Identities=23% Similarity=0.196 Sum_probs=46.2
Q ss_pred eeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH---cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ---EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~---~~~~~ilvvNKiD~~~ 281 (1291)
.+.+.||||+..+...+....+.+|++++|+|.......+.. ..++.+++ .+.|+++++||+|...
T Consensus 79 ~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 79 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 456799999987765566667889999999998764332221 22233332 3678999999999864
No 441
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.87 E-value=0.18 Score=59.49 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=33.1
Q ss_pred cEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 241 GVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 241 ~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+++||+|+..|+.+.|.++++.+. .++|+|+|+||+|...
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 477899999999999999999987 7899999999999863
No 442
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.77 E-value=0.0054 Score=64.12 Aligned_cols=90 Identities=58% Similarity=1.095 Sum_probs=62.9
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
.+++||||++..+...|...+......+.++++++|.+++.+|+.+|+. ..+|.+++.+.+++|+..|.....|++.+|
T Consensus 88 ~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (196)
T 1tev_A 88 KFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK-SSGRSDDNRESLEKRIQTYLQSTKPIIDLY 166 (196)
T ss_dssp EEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH-TSSCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc-cCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 6889999988666555554432211233578999999999999998863 246888899999999988888877776655
Q ss_pred cchhhhhhhch
Q psy15088 697 EAKNLVKRFNA 707 (1291)
Q Consensus 697 a~k~~~~~~~g 707 (1291)
...+.+..+++
T Consensus 167 ~~~~~~~~id~ 177 (196)
T 1tev_A 167 EEMGKVKKIDA 177 (196)
T ss_dssp HHTTCEEEEET
T ss_pred HhcCCEEEEEC
Confidence 44333333443
No 443
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.50 E-value=0.074 Score=55.59 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=40.2
Q ss_pred eeEEecCCCcccc-HHHHHHHhhhcCcEEEEEECCCCCchhHH-HHHHHHHH----cCCcEEEEEEccCccc
Q psy15088 216 NNNKCLPPGHVNF-SDEVTAAMRLCDGVVLFVDAAEGVMLNTE-RLLKHAVQ----EKMAITLCVNKIDRLM 281 (1291)
Q Consensus 216 ~~~liDtpG~~~~-~~~~~~a~~~~D~~l~vVD~~~g~~~~~~-~~~~~l~~----~~~~~ilvvNKiD~~~ 281 (1291)
.+.++||+|.... ..-...-.+.+|++++|+|...--.-+.. ..+..+++ .++|+++|.||+|...
T Consensus 57 ~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 57 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp EEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred EEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 5678899997542 11122345679999999998753222211 22233332 3789999999999853
No 444
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.28 E-value=0.097 Score=59.20 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.9
Q ss_pred eEEEEcccCCChhHHHHHHHhh
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
+|+++|+.++|||||+++|.+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998764
No 445
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.57 E-value=0.22 Score=57.80 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=31.0
Q ss_pred CceeEEecCCCcccc-------HHHHHHHhhhcCcEEEEEECCC
Q psy15088 214 TRNNNKCLPPGHVNF-------SDEVTAAMRLCDGVVLFVDAAE 250 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~-------~~~~~~a~~~~D~~l~vVD~~~ 250 (1291)
+..+.++||||+..+ ..+....++.||++++|||+.+
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457899999999764 3456778999999999999986
No 446
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.36 E-value=0.088 Score=59.44 Aligned_cols=25 Identities=32% Similarity=0.163 Sum_probs=21.6
Q ss_pred cceEEEEcccCCChhHHHHHHHhhc
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
.+.|+++|+.++||||++..|....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999998654
No 447
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.26 E-value=0.29 Score=54.38 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=51.4
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEE-EEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAIT-LCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~i-lvvNKiD~~~ 281 (1291)
+.+.|||||+..... .....+..||.+|+|+.+...-.......++.+++.+.+++ +|+|++|...
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 468899999975443 34445678999999999887777777888888888899877 7899999754
No 448
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.19 E-value=0.23 Score=59.01 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=42.0
Q ss_pred CceeEEecCCCccccHHHHHHH------hhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc-EEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAA------MRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a------~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~ 280 (1291)
++.+.||||||...+...+..+ +..+|.+++|+|+..|. .....++... .+++ .-+|+||+|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 4578899999987654443332 34688999999998873 2223333222 2355 34689999975
No 449
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.98 E-value=0.23 Score=54.50 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=50.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcE-EEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAI-TLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~-ilvvNKiD~~ 280 (1291)
++.+.+||||+... ..+..++..||.+|+|+.+...-......+++.+++.+.+. -+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 45788999998654 56778899999999999876544456667777887777664 4789999964
No 450
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.64 E-value=0.65 Score=52.34 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=29.3
Q ss_pred EEEEEECC-CCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 242 VVLFVDAA-EGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 242 ~l~vVD~~-~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+|++++.. .|+.+.+.++++.+. .++++++|+||.|...
T Consensus 130 ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSC
T ss_pred eeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCC
Confidence 56666654 469998877777664 3679999999999863
No 451
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.42 E-value=0.21 Score=53.18 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=50.9
Q ss_pred CceeEEecCCCc-cccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc-CCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGH-VNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE-KMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~-~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~-~~~~ilvvNKiD~~ 280 (1291)
.+.+.+||||+. ... .+..++..||.+|+++.+...-.......++.+++. +.+..+|+|++|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 457889999997 433 466789999999999988765555666777788774 77888999999964
No 452
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.68 E-value=0.36 Score=51.88 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=50.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcE-EEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAI-TLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~ 281 (1291)
.+.+.+||||+... ..+..++..+|.+|+|+.+...-.......++.+++.+.+. -+|+||++...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 45688999998654 56778999999999999876544455667778888877664 56799999653
No 453
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=89.06 E-value=0.36 Score=42.55 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=53.3
Q ss_pred EEEEEecccchhHHHHHHhccCcEEeeccccCCCCcEEEEEecccccccCchHHHhhccccceEe
Q psy15088 1152 FVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFC 1216 (1291)
Q Consensus 1152 ~~eI~~p~~~lg~V~~~L~~RRG~I~~~~~~~gt~~~~I~a~lPv~esfgf~~~LRs~T~G~a~~ 1216 (1291)
...++|+...+|+|...|.+..+.|.+.+.- ....++..+|..+.-.|...|+..|+|++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~---~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQ---AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEE---EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEccccc---CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 4678899999999999999999999987763 3588999999999999999999999999853
No 454
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.05 E-value=0.57 Score=52.76 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=53.1
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEE-EEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAIT-LCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~i-lvvNKiD~~~ 281 (1291)
+.+.|||||+..... +.......+|.+|+|+.+...-.......++.+++.+.+++ +|+|++|...
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 468899999976543 34455688999999999888777888888999998888865 7799999753
No 455
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.87 E-value=0.025 Score=58.81 Aligned_cols=79 Identities=52% Similarity=0.978 Sum_probs=56.3
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEee
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFF 696 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~s 696 (1291)
.+++||||+...+...|...+......+.++++++|.+++.+|+..|+. ..+|.+++.+.+++|+..|.....|+...+
T Consensus 85 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~ 163 (194)
T 1qf9_A 85 NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE-SSGRSDDNIESIKKRFNTFNVQTKLVIDHY 163 (194)
T ss_dssp CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT-TSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 6789999998766665654433211234578999999999999998863 246788889999999977766555554443
No 456
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.53 E-value=0.21 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.6
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhc
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
++++|+|+|++|+|||||+++|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999764
No 457
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.44 E-value=0.23 Score=52.48 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.6
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTH 425 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~ 425 (1291)
-+-|+|+|+.++|||||+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999997653
No 458
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.41 E-value=0.39 Score=52.37 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=48.4
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcC---------CcEEEEEEccCcc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEK---------MAITLCVNKIDRL 280 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~---------~~~ilvvNKiD~~ 280 (1291)
+.+.+||||+... ..+..++..||.+|+|+++...-......+++.++..+ .+.-+|+|++|..
T Consensus 114 yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 114 FEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 4688999998544 46788999999999999976544445556667766554 4677889999864
No 459
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.33 E-value=0.27 Score=53.18 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=48.7
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc-EEEEEEccCc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~ 279 (1291)
.+.+.+||||+.... .+..++..||.+|+|+++...-......+.+.+++.+.+ +.+|+||++.
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 457889999986544 466788999999999987654444556666777778875 6788999985
No 460
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.29 E-value=0.038 Score=64.48 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=45.6
Q ss_pred CceeEEecCCCccccH-------HHHHHHh---hhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFS-------DEVTAAM---RLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~-------~~~~~a~---~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
+..+.++||||+.+.. .+....+ ...|.+++++|+...+.......++++...++|+++++||+|...
T Consensus 211 ~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 211 ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 3457899999986432 2233444 788999999998533222122224556667889999999999864
No 461
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.21 E-value=0.64 Score=51.09 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=48.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHc--CCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE--KMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~--~~~~ilvvNKiD~~ 280 (1291)
.+.+.+||||+... ..+..++..||.+|+++.+...-......+++.+++. +.++.+|+|++++.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 35688999999653 3467888899999999998654344455667777776 45788999999543
No 462
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.19 E-value=0.7 Score=50.56 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=44.3
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH------cCCcEE-EEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ------EKMAIT-LCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~------~~~~~i-lvvNKiD~~ 280 (1291)
++.+.+||||+.... .+..++..||.+|+++.+...-......+++.+++ .+.+++ +|+|++|..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 567889999997543 35677889999999999765332333444444432 256664 889999864
No 463
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.16 E-value=1.1 Score=50.12 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=46.9
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH------cCCcEE-EEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ------EKMAIT-LCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~------~~~~~i-lvvNKiD~~ 280 (1291)
.+.+.|||||+.... .+..++..||.+|+++.+...-......+++.+++ .+.+++ +|+|++|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 356889999997544 34567788999999999876555555556666554 266754 789999964
No 464
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=88.05 E-value=0.28 Score=56.70 Aligned_cols=51 Identities=24% Similarity=0.152 Sum_probs=33.9
Q ss_pred CceeEEecCCCccccHH-------HHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSD-------EVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~-------~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
...+.++||||+..+.. +....++.+|++++|||+.+ ..+++.+.||+|-.
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~----------------~~~v~~v~~~~dp~ 122 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE----------------NDDIVHVAGKIDPL 122 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC----------------C---------CCHH
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC----------------CCceeeecCCcChH
Confidence 35789999999987653 34667899999999999987 34567888999954
No 465
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.62 E-value=0.27 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=22.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhcC
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQTH 425 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~~ 425 (1291)
+++|+|+.++|||||++.|.+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998764
No 466
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=87.04 E-value=0.87 Score=50.90 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=52.4
Q ss_pred ceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcE-EEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAI-TLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~-ilvvNKiD~~~ 281 (1291)
+.+.|||||+..... +.....+.||++|+|+.+...-.......++.+++.+.++ -+|+||+|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 468899999976543 3556678899999999988766777778889999988885 46799999653
No 467
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=86.99 E-value=0.74 Score=57.24 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred ccceEEEEcccCCChhHHHHHHHhhcCC-cccCCccccccccccccc---------------------------------
Q psy15088 399 LIRNVALVGHLHHGKTTMIDCLIRQTHP-GYRQPAEEKNLRYTDTLF--------------------------------- 444 (1291)
Q Consensus 399 ~irnI~iiG~~~~GKsTl~~~ll~~~~~-i~~~~~~~~~~~~~D~~~--------------------------------- 444 (1291)
.+..|||+|+.++|||||+++|.+.... ........+.........
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Q ss_pred --cccccCceeeeccceecccccCCCCeEEEEEeCCCccc--cccccccc--------------ccceEEEEecCCCcc-
Q psy15088 445 --TEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPV--TLLLPDVK--------------GKNYLMNIFDTPGMW- 505 (1291)
Q Consensus 445 --~E~erGiTi~~~~~~~~~~~~~~~~~~~~liDTpGh~~--~~~l~~~~--------------~ad~~v~vida~~g~- 505 (1291)
.....|.+.+...+.+..+ ..-.+.|+|.||... +..+.... ...++++++.+.-++
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~----~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSR----DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEES----SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HhcCCccccchHHHHHHhcCC----CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Q ss_pred chhhHhhHHHHHhhcCccchh
Q psy15088 506 DIHVRKFSKKAAHASAQRSFV 526 (1291)
Q Consensus 506 ~~qt~~~~~~~~~~~~~~~fv 526 (1291)
.....++++.....|.+.++|
T Consensus 200 ~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 200 TTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp TCHHHHHHHHHCSSCCSEEEE
T ss_pred cHHHHHHHHHHhhcCCceEEE
No 468
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.08 E-value=0.33 Score=58.18 Aligned_cols=24 Identities=42% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
..|+|+|..|+|||||+..|.+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 479999999999999999998764
No 469
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.62 E-value=0.37 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
+.++|+|+.++|||||++.|++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998753
No 470
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=85.56 E-value=1.6 Score=48.62 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=66.6
Q ss_pred hhhHHHHHHhhhccccccCCCCCcccc-------cceeEEecc-ccc--CCCcccc---ccCCCceeeecCceeEEecCC
Q psy15088 157 LGSVKDSIVQGFQWGTREGPLCEEPIR-------NVKFKIREG-NLN--SSPSIYC---SNKSHSWEIVCTRNNNKCLPP 223 (1291)
Q Consensus 157 ~~~~~~si~~GF~~a~~~GpL~~E~~~-------Gv~~~l~D~-~lh--t~as~~~---~~~~~~~~ii~~~~~~liDtp 223 (1291)
+.+...|+++-..++..-.|+++=|-| ||.|.+.+. .|. +-.+.|+ ++.....+-. ..++..--+|
T Consensus 111 lE~~~~~lv~~lm~~~e~~p~~g~~~r~~~giGsGv~~~~~~~~~fni~tLYs~tr~ER~r~~~e~~~~-~~k~f~~~~~ 189 (312)
T 3l2o_B 111 LEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSA-VNKMFSRHNE 189 (312)
T ss_dssp HHHSSSCHHHHHTTCGGGCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC------------------------
T ss_pred cccccHHHHHHHHcCCCccccccccCCCcCccccceEEEECCceeEEEEEeccccHHHHhhhhhhhhhh-hhhhccccCC
Confidence 456778999999998888888877744 788888766 332 2222333 2222221111 1122223333
Q ss_pred ------CccccHHHHHHHhhhcCcEEEEEECCCCCchhHHH----HHHHHH----HcCCcEEEEEEc-cCccc
Q psy15088 224 ------GHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER----LLKHAV----QEKMAITLCVNK-IDRLM 281 (1291)
Q Consensus 224 ------G~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~----~~~~l~----~~~~~~ilvvNK-iD~~~ 281 (1291)
|+..+..--..=.+.+|++|||||+.+--....++ +.+.+. ..+.|++++.|| -|.+.
T Consensus 190 ~~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 190 GDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp -------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 44444333445567899999999997653322222 223332 158899999997 47653
No 471
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.53 E-value=0.36 Score=55.45 Aligned_cols=60 Identities=20% Similarity=0.071 Sum_probs=37.6
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~ 280 (1291)
+..+.||||||...-.. .....+|.+++|+|+..|-..+ .+.+.+ ..++.++++||+|..
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~--~i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQ--GIKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHH--HHHHHH--hccccEEEEEchhcc
Confidence 56889999999864322 3357999999999986542111 010001 134678889999964
No 472
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=85.50 E-value=1.4 Score=46.68 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=53.6
Q ss_pred hHHHHHHhhhccccccCCCCCcccc-------cceeEEecc-ccc--CCCcccc---ccCCCceeeecCceeEEecCCCc
Q psy15088 159 SVKDSIVQGFQWGTREGPLCEEPIR-------NVKFKIREG-NLN--SSPSIYC---SNKSHSWEIVCTRNNNKCLPPGH 225 (1291)
Q Consensus 159 ~~~~si~~GF~~a~~~GpL~~E~~~-------Gv~~~l~D~-~lh--t~as~~~---~~~~~~~~ii~~~~~~liDtpG~ 225 (1291)
+...|+++-..|+-.-=|.++=|-| ||+|.+.+- .|. +-.+.++ ++.....+-. ..++..--+||-
T Consensus 28 ~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~~-~~k~~~~~~~~~ 106 (227)
T 3l82_B 28 ELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSA-VNKMFSRHNEGD 106 (227)
T ss_dssp SSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----------------------------
T ss_pred cccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhhh-hhhcccccCCCc
Confidence 4445677777776656666666643 566666554 222 2222222 2212222211 124444556643
Q ss_pred cccHHH------HHHHhhhcCcEEEEEECCCCCchhHHH-H---HHHHHH----cCCcEEEEEEcc-Ccc
Q psy15088 226 VNFSDE------VTAAMRLCDGVVLFVDAAEGVMLNTER-L---LKHAVQ----EKMAITLCVNKI-DRL 280 (1291)
Q Consensus 226 ~~~~~~------~~~a~~~~D~~l~vVD~~~g~~~~~~~-~---~~~l~~----~~~~~ilvvNKi-D~~ 280 (1291)
.+...| -..=.+.+|++|||||+.+.-....++ + .+.+.. .+.|++++.||. |.+
T Consensus 107 ~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ----------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred cccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 222222 233456899999999997653222333 2 222322 477999999996 565
No 473
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.47 E-value=0.56 Score=50.59 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=50.1
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCC---cEEEEEEccCccc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM---AITLCVNKIDRLM 281 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~---~~ilvvNKiD~~~ 281 (1291)
.+.+.+||||+.... .+..++..||.+|+|+.....-......+++.+++.+. ..-+|+|+++...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 356889999986543 46678999999999998765445566677788877763 3778899999653
No 474
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.96 E-value=0.44 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhcC
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQTH 425 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~~ 425 (1291)
-..|+|+|.+++|||||++.|.+..|
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45899999999999999999987654
No 475
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.87 E-value=0.51 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTH 425 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~ 425 (1291)
..|+|+|.+++||||++..|....+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4799999999999999999976543
No 476
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.83 E-value=1.2 Score=52.72 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=39.1
Q ss_pred CceeEEecCCCccccH----HHH--HHHhhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCc-EEEEEEccCcc
Q psy15088 214 TRNNNKCLPPGHVNFS----DEV--TAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMA-ITLCVNKIDRL 280 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~----~~~--~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~-~ilvvNKiD~~ 280 (1291)
++.+.||||||..... .++ ...+..+|.++||+|+..|. .....++.... ..+ .-+|+||+|..
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 4568899999976432 222 12233589999999998662 22223332222 344 56689999975
No 477
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.75 E-value=0.43 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.090 Sum_probs=21.7
Q ss_pred cceEEEEcccCCChhHHHHHHHhhc
Q psy15088 400 IRNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 400 irnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
.+.|+++|+.++||||++..|....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998664
No 478
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.74 E-value=0.49 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred ceEEEEcccCCChhHHHHHHHhh
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQ 423 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~ 423 (1291)
..|+|+|.+++|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999764
No 479
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.66 E-value=0.47 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
+.|+|+|.+++||||++..|....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998664
No 480
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.55 E-value=0.42 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
..|+|+|+.++|||||++.|.+..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998664
No 481
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.40 E-value=0.48 Score=48.11 Aligned_cols=24 Identities=42% Similarity=0.529 Sum_probs=21.5
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
.+|+|+|.+++||||++..|....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998664
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.37 E-value=1.2 Score=49.25 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=46.7
Q ss_pred cCcEEEEEEC-CCCCchhHHHHHHHHHHcCCcEEEEEEccCccccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy15088 239 CDGVVLFVDA-AEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHIIDEINGLLRYLLI 311 (1291)
Q Consensus 239 ~D~~l~vVD~-~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 311 (1291)
++++++++|. .+|+.+.+.++++.+++. +++|+|+||+|... ..+ +....+.+...+...+.
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt------~~e----~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT------LEE----KSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC------HHH----HHHHHHHHHHHHHHTTC
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC------HHH----HHHHHHHHHHHHHHcCc
Confidence 5888999995 489999999999999887 99999999999864 222 33344555555655553
No 483
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.36 E-value=1.5 Score=49.85 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred CceeEEecCCCccccHHHHHHHh------------hhcCcEEEEEECCCCCchhHHHHHHHHHHcC--CcE-EEEEEccC
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAM------------RLCDGVVLFVDAAEGVMLNTERLLKHAVQEK--MAI-TLCVNKID 278 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~------------~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~--~~~-ilvvNKiD 278 (1291)
++.+.||||||..........++ ..+|.+++|+|+..| . ..++.++... .++ =+|+||+|
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~~~~~i~GvVltk~d 265 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFSKVADVSGIILTKMD 265 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHTTTSCCCEEEEECGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHhhcCCCcEEEEeCCC
Confidence 45788999999866433322222 237899999999865 2 2233334332 333 46899999
Q ss_pred cc
Q psy15088 279 RL 280 (1291)
Q Consensus 279 ~~ 280 (1291)
..
T Consensus 266 ~~ 267 (320)
T 1zu4_A 266 ST 267 (320)
T ss_dssp GC
T ss_pred CC
Confidence 75
No 484
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=84.21 E-value=1.9 Score=51.14 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=44.2
Q ss_pred ccccceEEEEcccCCChhHHHHHHHhhcCC-----ccc-CCccccccccccccccccccCceeeeccceecccccCCCCe
Q psy15088 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHP-----GYR-QPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNY 470 (1291)
Q Consensus 397 ~~~irnI~iiG~~~~GKsTl~~~ll~~~~~-----i~~-~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~~~~~ 470 (1291)
...+.-|+|+|..++|||+|+|.|+...+. ... ......+-.+..+. .-..+||=+-+.++.... ..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~-~~~TkGIWmw~~p~~~~~--~~g~~~ 140 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGS-ERETTGIQIWSEIFLINK--PDGKKV 140 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSS-SCCCCSEEEESSCEEEEC--TTSCEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCC-CCcCceEEEecCcccccC--CCCCee
Confidence 456789999999999999999977643211 000 00001111121111 112346544333332222 245677
Q ss_pred EEEEEeCCCc
Q psy15088 471 LMNIFDTPAS 480 (1291)
Q Consensus 471 ~~~liDTpGh 480 (1291)
.+.++||.|.
T Consensus 141 ~vlllDTEG~ 150 (457)
T 4ido_A 141 AVLLMDTQGT 150 (457)
T ss_dssp EEEEEEECCB
T ss_pred EEEEEeccCC
Confidence 8999999996
No 485
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.17 E-value=0.48 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
+-|+|+|+.++|||||+++|++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998764
No 486
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.17 E-value=0.061 Score=55.72 Aligned_cols=81 Identities=36% Similarity=0.748 Sum_probs=54.7
Q ss_pred ceeecCCCCccCccchHHHHHHHH-HHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~-~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
++++||||++..+...|...+.+. ...+.++++++|.+++.+|+..|+. ..+|.+++.+.+++|+..|.....|+...
T Consensus 79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~r~~~~~~~~~~r~~~~~~~~~~l~~~ 157 (186)
T 3cm0_A 79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAE-LEGRSDDNEETVRRRLEVYREKTEPLVGY 157 (186)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHH-HHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998866554444222211 0134678999999999999998741 11367788999999998877666665554
Q ss_pred ecc
Q psy15088 696 FEA 698 (1291)
Q Consensus 696 sa~ 698 (1291)
|+.
T Consensus 158 ~~~ 160 (186)
T 3cm0_A 158 YEA 160 (186)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 487
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.15 E-value=0.54 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
+-++|+|+.++|||||+++|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998764
No 488
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.13 E-value=0.069 Score=57.29 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=0.0
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhccc----------------------CCCCCCCC
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGA----------------------EGSGRADD 673 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~----------------------~~~~r~dd 673 (1291)
.+|++||||++..++..+.. .....+.+++++++.+.+.+|+..|.. ....|.++
T Consensus 85 ~~~vidg~~~~~~~~~~l~~---~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d 161 (222)
T 1zak_A 85 NGWLLDGYPRSYSQAMALET---LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD 161 (222)
T ss_dssp TCEEEESCCCSHHHHHHHHT---TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred CcEEEECCCCCHHHHHHHHH---cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Q ss_pred CHHHHHHHHhhccccccceEEeec
Q psy15088 674 NEESLKKRISVYNTETMPIIKFFE 697 (1291)
Q Consensus 674 ~~e~i~~rl~~~~~~~~PVl~~sa 697 (1291)
..+.+++|+..|..+..|+..+|.
T Consensus 162 ~~~~i~~Rl~~~~~~~~~l~~~y~ 185 (222)
T 1zak_A 162 TEEKVKLRLETYYQNIESLLSTYE 185 (222)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
No 489
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=84.08 E-value=0.78 Score=47.92 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCcccccccccccccceEEEEecCCCccchhhHhhHHHHHh
Q psy15088 468 KNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAH 518 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~ 518 (1291)
+.|.+.+||||+........++..+|.+++++.....- ............
T Consensus 74 ~~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~ 123 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLE 123 (206)
T ss_dssp TTSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHH
Confidence 46889999999986544555666778888888765443 444555555443
No 490
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.05 E-value=0.47 Score=49.67 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.9
Q ss_pred eEEEEcccCCChhHHHHHHHhhc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
-|+|+|+.++|||||++.|.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999998763
No 491
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.70 E-value=0.57 Score=50.54 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=35.6
Q ss_pred CCeEEEEEeCCCcccccccccccccceEEEEecCCCccchhhHhhHHHHHhhcCccc
Q psy15088 468 KNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRS 524 (1291)
Q Consensus 468 ~~~~~~liDTpGh~~~~~l~~~~~ad~~v~vida~~g~~~qt~~~~~~~~~~~~~~~ 524 (1291)
..|.+.+||||+........++..+|.+++++.....--....++.......+++.+
T Consensus 130 ~~yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~ 186 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKV 186 (254)
T ss_dssp TCCSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCE
T ss_pred CCCCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccE
Confidence 578999999998754455555667788888887643211223344444455565443
No 492
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=83.57 E-value=0.13 Score=60.05 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=44.6
Q ss_pred ceeEEecCCCccccH-------HHHHHH---hhhcCcEEEEEECCCCCchhHHHHHHHHHHcCCcEEEEEEccCccc
Q psy15088 215 RNNNKCLPPGHVNFS-------DEVTAA---MRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLM 281 (1291)
Q Consensus 215 ~~~~liDtpG~~~~~-------~~~~~a---~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~~~~~~ilvvNKiD~~~ 281 (1291)
..+.++||||+.+.. .+.... ....+.+++++|+...+.......++++...++|+++|+||+|...
T Consensus 211 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 211 EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 347899999986432 222222 4678999999998533222222224555667889999999999864
No 493
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.21 E-value=0.046 Score=57.25 Aligned_cols=98 Identities=27% Similarity=0.572 Sum_probs=0.0
Q ss_pred CceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHHhhccccccceEEe
Q psy15088 616 NKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKF 695 (1291)
Q Consensus 616 ~~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl~~~~~~~~PVl~~ 695 (1291)
..+++||||+...++..|...+. ..+.++++++|.+++.+|+.+|+. ...|.+++.+.+.+|+..|.....|+...
T Consensus 92 ~~vi~dg~~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 167 (199)
T 2bwj_A 92 RGFLIDGYPREVKQGEEFGRRIG---DPQLVICMDCSADTMTNRLLQMSR-SSLPVDDTTKTIAKRLEAYYRASIPVIAY 167 (199)
T ss_dssp SCEEEETCCSSHHHHHHHHHHTC---CCSEEEEEECCHHHHHHHHHHTCC-CCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEeCCCCCHHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ecchhhhhhhchhHHHHHHHHh
Q psy15088 696 FEAKNLVKRFNAEKSLVEMCVK 717 (1291)
Q Consensus 696 sa~k~~~~~~~g~~~LLD~Iv~ 717 (1291)
|...+.+..+++..++-+....
T Consensus 168 ~~~~~~~~~id~~~~~e~v~~~ 189 (199)
T 2bwj_A 168 YETKTQLHKINAEGTPEDVFLQ 189 (199)
T ss_dssp HHHHSEEEEEETTSCHHHHHHH
T ss_pred HHhcCCEEEEECCCCHHHHHHH
No 494
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.11 E-value=0.64 Score=52.29 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=45.2
Q ss_pred CceeEEecCCCccccHHHHHHHhhhcCcEEEEEECCCCCchhHHHHHHHHHH----cCCcEE-EEEEccCc
Q psy15088 214 TRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQ----EKMAIT-LCVNKIDR 279 (1291)
Q Consensus 214 ~~~~~liDtpG~~~~~~~~~~a~~~~D~~l~vVD~~~g~~~~~~~~~~~l~~----~~~~~i-lvvNKiD~ 279 (1291)
++.+.+||||+..... .+..++..||.+|+|+.+..--......+++.+++ .+.+++ +|+||++.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4578899999865422 23467899999999998654333445556666665 355655 88999995
No 495
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.83 E-value=0.56 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred eEEEEcccCCChhHHHHHHHhhc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
-++|+|+.++|||||+++|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999998764
No 496
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.63 E-value=0.68 Score=49.32 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.0
Q ss_pred ceEEEEcccCCChhHHHHHHHhhcC
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQTH 425 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~~ 425 (1291)
..|+|+|.+++||||+++.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999987654
No 497
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=82.45 E-value=0.59 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEcccCCChhHHHHHHHhhc
Q psy15088 401 RNVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 401 rnI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
..|||+|+.++|||||++.|.+..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998764
No 498
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.36 E-value=0.66 Score=46.72 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=36.4
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcccCCCCCCCCCHHHHHHHH
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRI 682 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg~~~~~r~dd~~e~i~~rl 682 (1291)
.+++||+ ++..+...+..... ....++++++|.+++.+|+..|+.. ....+.+.+.+|+
T Consensus 80 ~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~---~~~~~~~~~~~r~ 138 (179)
T 3lw7_A 80 LVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRS---DDSKEISELIRRD 138 (179)
T ss_dssp CEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHH
T ss_pred eEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCC---CCcchHHHHHHHH
Confidence 5788888 55444444333221 1225789999999999999988532 1124566676665
No 499
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.16 E-value=0.73 Score=50.02 Aligned_cols=89 Identities=21% Similarity=0.456 Sum_probs=56.3
Q ss_pred ceeecCCCCccCccchHHHHHHHHHHHHHhhhcCCCchHHHHHHhhcc--------------------------cCCCCC
Q psy15088 617 KFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRG--------------------------AEGSGR 670 (1291)
Q Consensus 617 ~~liDGfPr~~~qa~~~~~~l~e~~~l~~v~~ld~~~e~l~~R~l~rg--------------------------~~~~~r 670 (1291)
+|+++|+|++..++..+ ........+++++++.+.+++|+..+. ....++
T Consensus 106 ~~il~g~~~~~~~~~~l----~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~l 181 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEAL----DKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQ 181 (246)
T ss_dssp CEEEESCCCSHHHHHHH----HTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCC
T ss_pred eEEEECCCCCHHHHHHH----HhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccC
Confidence 56778888754322211 110112346788899988888887653 122234
Q ss_pred CCCCHHHHHHHHhhccccccceEEeecchhhhhhhchhH
Q psy15088 671 ADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEK 709 (1291)
Q Consensus 671 ~dd~~e~i~~rl~~~~~~~~PVl~~sa~k~~~~~~~g~~ 709 (1291)
.+++.+.+.+++..|..+..|++.+|..++.+..++|.+
T Consensus 182 d~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~ 220 (246)
T 2bbw_A 182 EDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTE 220 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCC
Confidence 455678888999888888888888877666666666643
No 500
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.10 E-value=0.65 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEcccCCChhHHHHHHHhhc
Q psy15088 402 NVALVGHLHHGKTTMIDCLIRQT 424 (1291)
Q Consensus 402 nI~iiG~~~~GKsTl~~~ll~~~ 424 (1291)
.++++|+.++|||||+..|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998764
Done!