RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15088
(1291 letters)
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET:
SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1
c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T
2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A*
1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A*
3b78_A* 3b8h_A*
Length = 842
Score = 720 bits (1859), Expect = 0.0
Identities = 272/932 (29%), Positives = 446/932 (47%), Gaps = 134/932 (14%)
Query: 383 TVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDT 442
+ ++ + +MD +RN++++ H+ HGK+T+ D L+++ A+ R+TDT
Sbjct: 2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGI--ISAAKAGEARFTDT 59
Query: 443 LFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTP 502
EQERG++IK++ ++L + V + G ++L+N+ D+P
Sbjct: 60 RKDEQERGITIKSTAISL-------------YSEMSDEDVKEIKQKTDGNSFLINLIDSP 106
Query: 503 GMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLG------ 556
G HV FS + A + L +V + V VL Q
Sbjct: 107 G----HVD-FSSEVTAAL---RVTDGAL-----VVVDTIEGVCVQTETVLRQALGERIKP 153
Query: 557 -IHMNK-----EESKINIRPL-LRLVYKVE-VNRVPAGNWVLIEGIDQPIVKTSTITDLI 608
+ +NK E +++ L VE VN + + + G Q T+
Sbjct: 154 VVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTV---A 210
Query: 609 TNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGS 668
+ F I F K DK +++ L+ D + ++ + +
Sbjct: 211 FGSGLHGWAFTIRQFATRYAK-----KFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAE 265
Query: 669 GRA---------------------DDNEESLKKRISVYNTETMPIIKFFEAKNLVKR--- 704
G+ + ++ + + K E K L+K
Sbjct: 266 GKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMR 325
Query: 705 --FNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKK 762
A +L+EM V H+PSP + +Y GP D +K C+P+ LM++ SK
Sbjct: 326 KFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSK- 384
Query: 763 NAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSGTLHA 822
M PT + F RV +GT+ +
Sbjct: 385 -------------------------------------MVPTSDKGRFYAFGRVFAGTVKS 407
Query: 823 GQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTS 882
GQ+VR+ G NY ++D I + R+ + R+ ++ PAGN + + GIDQ ++KT
Sbjct: 408 GQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTG 467
Query: 883 TITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEE 942
T+T +E + + +KF+ V+++AVE N ++LPK+++GL++++KS P + T + E
Sbjct: 468 TLTT---SETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSE 524
Query: 943 SGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNKRN 1002
SGEH+V GTGEL+L+ + DL ++ + +K++ PVVA+ ETV SS +++PNK N
Sbjct: 525 SGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHN 584
Query: 1003 KITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPN 1062
+I + AEP+++ ++ IEN I++ + K Y WD+ AR IW FGP+ GPN
Sbjct: 585 RIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPN 644
Query: 1063 ILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHR 1122
+++D T + L +KDS+V FQW T+EGP+ E +R+V+ ILD + + +HR
Sbjct: 645 LVIDQTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHR 700
Query: 1123 GGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPV 1182
GGGQIIPT RR Y+ FL+A P++ EP VE+Q P V +Y+VL K+RG V +
Sbjct: 701 GGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQR 760
Query: 1183 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEP 1242
PG+PL+T+KA++P +SFGF +LR T GQAF VF HW + DPLD
Sbjct: 761 PGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDP--------- 811
Query: 1243 QPATHLAREFMIKTRRRKGLSEDV-SINKFFD 1273
T A E ++ R+R G+ E+V +++D
Sbjct: 812 ---TSKAGEIVLAARKRHGMKEEVPGWQEYYD 840
Score = 225 bits (574), Expect = 3e-61
Identities = 75/199 (37%), Positives = 124/199 (62%), Gaps = 4/199 (2%)
Query: 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAF 60
+++GL++++KS P + T + ESGEH+V GTGEL+L+ + DL ++ + +K++ PVVA+
Sbjct: 504 LVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAY 563
Query: 61 CETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSKY 120
ETV SS +++PNK N+I + AEP+++ ++ IEN I++ + K Y
Sbjct: 564 RETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDY 623
Query: 121 DWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCEE 180
WD+ AR IW FGP+ GPN+++D T + L +KDS+V FQW T+EGP+ E
Sbjct: 624 GWDVTDARKIWCFGPDGNGPNLVIDQTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGE 679
Query: 181 PIRNVKFKIREGNLNSSPS 199
+R+V+ I + L++
Sbjct: 680 EMRSVRVNILDVTLHADAI 698
Score = 136 bits (343), Expect = 1e-32
Identities = 34/84 (40%), Positives = 57/84 (67%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EVTAA+R+ DG ++ VD EGV + TE +L+ A+ E++ + +NK+DR +L
Sbjct: 106 PGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL 165
Query: 283 ELKLPPQDAYYKIKHIIDEINGLL 306
EL++ +D Y ++ +N ++
Sbjct: 166 ELQVSKEDLYQTFARTVESVNVIV 189
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 142 bits (360), Expect = 1e-38
Identities = 59/120 (49%), Positives = 74/120 (61%), Gaps = 8/120 (6%)
Query: 598 IVKTSTITDLITNE-------DITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFD 650
IV L+ E + NKFLIDGFPRNQ+NL GWNK M K ++ +VLFFD
Sbjct: 62 IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121
Query: 651 CPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
C ++C+ RCL+RG SGR+DDN ESL+KRI Y T PII +E VK+ +A KS
Sbjct: 122 CNNEICIERCLERGKS-SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 180
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 141 bits (358), Expect = 2e-38
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 598 IVKTSTITDLITN--EDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDV 655
IV + L+ N + FL+DGFPRN+ N + W + M D V+ +VLFFDCPE+V
Sbjct: 64 IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123
Query: 656 CVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
+R LKRG SGR+DDN ES+KKR + +N +T +I + + VK A +
Sbjct: 124 MTQRLLKRGES-SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRD 177
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 138 bits (349), Expect = 3e-37
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKR 663
+ D + + TS FLIDG+PR + + + + + +L+ D + +R LKR
Sbjct: 77 LRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG---QPTLLLYVDAGPETMTQRLLKR 133
Query: 664 GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
G E SGR DDNEE++KKR+ Y T P+I F+E + +V++ NAE S
Sbjct: 134 G-ETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGS 179
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 136 bits (344), Expect = 2e-36
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKR 663
+ + + + FLIDG+PR + + + + + V+ DC D R L+
Sbjct: 80 LKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG---DPQLVICMDCSADTMTNRLLQM 136
Query: 664 GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
S DD +++ KR+ Y ++P+I ++E K + + NAE +
Sbjct: 137 S-RSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGT 182
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 134 bits (339), Expect = 8e-36
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 607 LITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAE 666
+ N +KFLIDGFPR + + +++ E ++LFFDCPED+ + R L+RG
Sbjct: 88 ISDNVKANKHKFLIDGFPRKMDQAISFERDIV---ESKFILFFDCPEDIMLERLLERGKT 144
Query: 667 GSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
SGR+DDN ES+KKR + + +MP+I++FE K+ V R ++S
Sbjct: 145 -SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRS 187
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 94.5 bits (236), Expect = 3e-22
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 606 DLITN---EDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRR 659
D + + + + + DGFPR LD E ++ V+ + PE+ VRR
Sbjct: 65 DDLILELIREELAERVIFDGFPRTLAQAEALDRLLSETGTRLL--GVVLVEVPEEELVRR 122
Query: 660 CLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
L+R GR+DDNEE++++R+ VY +T P++ ++EA+ ++KR + +
Sbjct: 123 ILRRAEL-EGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGT 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 85.7 bits (213), Expect = 8e-19
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 604 ITDLITNEDITSNKFLIDGFPRN--Q-NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
I D +TN N F++DGFPR Q LD KE L + +++ V R
Sbjct: 72 IKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQ--GTPLEKAIELKVDDELLVARI 129
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R G R+DDN ++LKKR++ Y+ +T PI+
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 695 FFEAKNLVKRFNAEKS 710
F++ + +A +
Sbjct: 190 FYKKTGIWAGVDASQP 205
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 84.5 bits (210), Expect = 1e-18
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
I LI + DGFPR LD ++ KV+ +VL F+ P++V + R
Sbjct: 64 IIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVD--HVLLFEVPDEVVIERL 121
Query: 661 LKR-------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNL 701
R G + R DD E +KKR+ VY +T P+I++++ K +
Sbjct: 122 SGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGI 181
Query: 702 VKRFNAEKSL 711
++ +A K +
Sbjct: 182 LRIIDASKPV 191
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 83.8 bits (208), Expect = 2e-18
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 604 ITDLITNEDITSNKFLIDGFPRN--Q-NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ D + N D +N F++DG+PR+ Q L + ++ VL F E+V + R
Sbjct: 88 VDDRLNNPD-AANGFILDGYPRSVEQAKALHEMLERR--GTDIDAVLEFRVSEEVLLERL 144
Query: 661 LKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
RG RADD ++ + R+ VY ET P+++++ ++ +K +A ++ E
Sbjct: 145 KGRG-----RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDE 190
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 84.1 bits (209), Expect = 2e-18
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 604 ITDLITNEDITSNKFLIDGFPRN--Q-NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + ++ +D FL+DGFPR Q + LD ++ +L YVL ++ ++R
Sbjct: 68 VHERLSKDD-CQKGFLLDGFPRTVAQADALDSLLTDL--GKKLDYVLNIKVEQEELMKRL 124
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R G E R DD E++K R+ V +T P++
Sbjct: 125 TGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLD 184
Query: 695 FFEAKNLVKRFNAEKSL 711
F+ K ++K + ++ +
Sbjct: 185 FYSQKGVLKDIDGQQDI 201
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 83.4 bits (207), Expect = 5e-18
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 32/136 (23%)
Query: 604 ITDLITNEDITSNKFLIDGFPRN--Q-NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + + +D FL+DGFPR Q L+ +EM + YV+ +DV + R
Sbjct: 68 VKERLGKDD-CERGFLLDGFPRTVAQAEALEEILEEM--GKPIDYVINIQVDKDVLMERL 124
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R G E RADDNEE++ KR+ V +T P++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLD 184
Query: 695 FFEAKNLVKRFNAEKS 710
F++ K + N ++
Sbjct: 185 FYDEKGYLVNVNGQQD 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 87.2 bits (215), Expect = 3e-17
Identities = 103/621 (16%), Positives = 201/621 (32%), Gaps = 166/621 (26%)
Query: 144 VDDTL--PSEVDK-----GLLGSVKDSIVQGFQWGTREGPLCEEPIR-NVKF---KIREG 192
+D + V L S ++ +VQ F EE +R N KF I+
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF---------VEEVLRINYKFLMSPIKTE 101
Query: 193 NLNSSP--SIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEV----TAAMRLCDGVVLFV 246
S +Y + + N+N+ +V+ A + L + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLY------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 247 DAAEGV---MLNTERLLKHAVQEKMA-----ITL-CVNKIDRLM-----LELKLPPQ--- 289
D G + + L + VQ KM + L N + ++ L ++ P
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 290 --DAYYKIKHIIDEINGLLRY----------LLI-DD--DREDGDEEMGDSQAVVLHEDK 334
D IK I I LR LL+ + + + + + ++ K
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 335 RYYPTAVEVFGPDVETVVQEED-----TQALSVPLIAPIKKKKFQLKEQDLPDT------ 383
+ T + + T L+ K + QDLP
Sbjct: 276 ----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLTTNP 327
Query: 384 -VYNM--EFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYT 440
++ E + D + T ++V TT+I+ + +PAE + + +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHV-----NCDKLTTIIESSLNVL-----EPAEYRKM-FD 376
Query: 441 D-TLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNY-LMNI 498
++F I ++L+ DV K+ +M + + +L+ K + +I
Sbjct: 377 RLSVFPP---SAHIPTILLSLIWFDVI-KSDVMVVVNKLHKY-SLVEKQPKESTISIPSI 431
Query: 499 FDTPGMWDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQ---- 554
+ ++ V+ ++ A H RS V+ Y + D D +P LDQ
Sbjct: 432 YL-----ELKVKLENEYALH----RSIVDH-----YNIPKTF--DSDDLIPPYLDQYFYS 475
Query: 555 -LGIHMNKEESKINIRPLLRLVY--------KVEVNRVPAGNWVLIEGIDQPIVKTSTIT 605
+G H+ E L R+V+ K+ R + W I +T+
Sbjct: 476 HIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSI------LNTLQ 525
Query: 606 DLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVR---RCLK 662
L + ++ D P+ + ++ + F E+ + L
Sbjct: 526 QLKFYK-----PYICDNDPKYERLVN------------AILDFLPKIEENLICSKYTDLL 568
Query: 663 RGA---EGSGRADDNEESLKK 680
R A E ++ + +++
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589
Score = 62.2 bits (150), Expect = 1e-09
Identities = 97/662 (14%), Positives = 191/662 (28%), Gaps = 186/662 (28%)
Query: 289 QDAYYK---IKHIIDEINGLLRYLLIDDDREDGDEEMG---------DSQAVVLHE---- 332
+DA+ K + D +L ID D G Q ++ +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 333 --DKRY----YPTAVEVFGPDVETVVQEE-------DTQALSVPLIAPIKKKKFQLKEQD 379
Y P E P + T + E D Q + + +L++
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQ-- 142
Query: 380 LPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMI-----DCLIRQTHP-------- 426
+ + P +NV + G L GKT + ++
Sbjct: 143 ---ALLELR--------PA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 427 GYRQPAEE-----KNLRYT-DTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPAS 480
E + L Y D +T + + L + L + +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSD------HSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 481 PVTLL-LPDVKGKNYLMNIFD--------TPGMWDIHVRKF--SKKAAHASAQRSFVEFV 529
LL L +V+ N F+ T V F + H S +
Sbjct: 244 ENCLLVLLNVQNAKAW-NAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 530 LEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKINIRPL-LRLV---YKVEVNRVPA 585
+ V L+ + + LP +E N P L ++ + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLP-----------REVLTTN--PRRLSIIAESIRDGLAT--W 344
Query: 586 GNW--VLIEGIDQPIVKTSTITDLITNEDITS-NKFLIDGFPRNQNNLDGWNKEMADKVE 642
NW V + + I+++S + L E ++ + FP + + + +
Sbjct: 345 DNWKHVNCDKLTT-IIESS-LNVLEPAEYRKMFDRLSV--FPPSAH--------IPTIL- 391
Query: 643 LLYVLFFD----CPEDV---CVRRCL--KRGAEGSGRADDNEESLKKRISVYNTETMPII 693
L +++FD V + L K+ E + LK ++ N +
Sbjct: 392 -LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYAL--- 445
Query: 694 KFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDVARDMKACNPEG 753
+++V +N K+ + P + Y Y S + +K
Sbjct: 446 ----HRSIVDHYNIPKTF---DSDDLIPPYLD-----QYFY-----SHIGHHLKNIEHPE 488
Query: 754 RLMVHSSK-------KNAETKVSYMYTGPGDS-DVARDMKACNPEGRLMVHSSKMYPTEE 805
R+ + + S + G + + +K K Y +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-----------FYKPYICDN 537
Query: 806 CTFFQVLARVMSGTLHAGQEVRVLGEN-----YSLMDEEDSRILTVGRLWIYEARYKVEV 860
++ L + L +E + + +LM E+++ I+E +K +V
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA---------IFEEAHK-QV 587
Query: 861 NR 862
R
Sbjct: 588 QR 589
Score = 55.6 bits (133), Expect = 1e-07
Identities = 64/475 (13%), Positives = 136/475 (28%), Gaps = 160/475 (33%)
Query: 871 IEGIDQPIVKTSTITDLITNED-----MYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDG 925
++ + + I+ I +I ++D + +F L + +++ VE V ++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 926 LRKVNKSYPLLTTKVEESGEHVVLGTGELY-------LDCVMHDLRKMYSEIDIKVADPV 978
++ + P + T++ + +++ L LR+ E+ + A V
Sbjct: 98 IKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLRQALLEL--RPAKNV 153
Query: 979 VAF----C------ETVVETSSLKCFAE------TPNKRNKITMIAEPLEK--------- 1013
+ V + ++C + N + E L+K
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1014 -GLAEDIENQIVHIAWNKKRLGEFFQSK-YDWDLLAARSIWAFGPEVTGPNILVDDTLPS 1071
++ N + I + L +SK Y+ LL +L +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----------------VL-LN---- 252
Query: 1072 EVDKGLLGSVKDS-IVQGFQWGTREGPLCEEPIRNVKFKILDAVIATEPLHRGGGQIIPT 1130
V+++ F N+ KIL + T
Sbjct: 253 ---------VQNAKAWNAF---------------NLSCKIL--L---------------T 271
Query: 1131 ARRVAYSAFLMA---TPRLMEPYL--FVEVQAPADCVSAVYTVLAKRRGHVTQDAP---V 1182
R + FL A T ++ + + ++L K QD P +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--------KSLLLKYLDCRPQDLPREVL 323
Query: 1183 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSI--VIRPL 1240
+P + +R L+ + +W+ V D L I + L
Sbjct: 324 TTNPR--------RLSIIA--ESIRDG-------LATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 1241 EPQPATHLAREFMIKTRRRKGLSEDVSI----------NKFFDDPMLL--ELARQ 1283
EP + + I + D M++ +L +
Sbjct: 367 EPAEYRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Score = 50.2 bits (119), Expect = 5e-06
Identities = 65/452 (14%), Positives = 120/452 (26%), Gaps = 133/452 (29%)
Query: 81 NKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQSK-YDWDLLAARSIWAFGPEVTG 139
K+ +P ++ N + I + L +SK Y+ LL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------------- 248
Query: 140 PNILVDDTLPSEVDKGLLGSVKDS-IVQGFQWG------TREGPLCEEPIRNVKFKIREG 192
+L + V+++ F TR + + I
Sbjct: 249 --VL-LN-------------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 193 NLNSSPSIYCSNKSHSWEIV--CTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVD-AA 249
+ + + + ++ + LP EV + A
Sbjct: 293 HHSMTLT-----PDEVKSLLLKYLDCRPQDLPR-------EV------LTTNPRRLSIIA 334
Query: 250 EGV--MLNTERLLKHAVQEKM--AITLCVNKIDRLMLELKLPPQD--AYYKIKHIIDE-- 301
E + L T KH +K+ I +N L P + + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLN---------VLEPAEYRKMFDRLSVFPPSA 385
Query: 302 -I-NGLLRYLLIDDDREDGDEEMGDSQAVVLHE----DKRYYPTAVEVFGPDVETVVQEE 355
I LL + D + D + + LH+ +K+ + + + +E V+ E
Sbjct: 386 HIPTILLSLIWFDVIKSD-VMVVVNK----LHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 356 DTQALSVPLIA--PIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGK 413
+ AL ++ I K Y + HH K
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG------------------HHLK 482
Query: 414 TTMIDCLIRQTHPGYRQPAEEKNL---RYTDTLFTEQ---ERGVSIKA-SPVTLLLPDVK 466
+ E L + D F EQ + A + L +
Sbjct: 483 NI--------------EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL- 527
Query: 467 GKNYLMNIFDTPASPVTLLLPDVKGKNYLMNI 498
K Y I D L+ + ++L I
Sbjct: 528 -KFYKPYICDNDPKY-ERLVNAI--LDFLPKI 555
Score = 47.9 bits (113), Expect = 2e-05
Identities = 94/781 (12%), Positives = 209/781 (26%), Gaps = 248/781 (31%)
Query: 408 HLHHGKTTMIDCLIRQTHPGYR------QPAEEKNLRYTDTLFTEQERGVSIKASPVTLL 461
H HH +D + Y+ + A N D + + + + + +
Sbjct: 3 HHHH-----MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSI-LSKEEIDHI 54
Query: 462 L--PDVKGKNYLMNIFDT----PASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKK 515
+ D +F T V + +V NY + +
Sbjct: 55 IMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINY-------KFLMS----PIKTE 101
Query: 516 AAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKINIRPLLRLV 575
S + +Y D ++++ + + +R L
Sbjct: 102 QRQPSMMTRMYIEQRDRLY-------NDNQVFAK-------YNVSRLQPYLKLRQAL--- 144
Query: 576 YKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPRNQNNLDG--W 633
++ + VLI+G KT D+ + + W
Sbjct: 145 LELRPAK-----NVLIDG-VLGSGKTWVALDVCLSYKVQCK------MD------FKIFW 186
Query: 634 ----NKEMADKV-ELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTE 688
N + V E+L L + + R ++ S S++ +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELR----- 235
Query: 689 TMPIIKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMYTGPGDSDV--ARDM 746
+ ++K E L+ + +V A+
Sbjct: 236 -----RLLKSKPY------ENCLLVL------------------------L-NVQNAKAW 259
Query: 747 KACNPEGRLMVHSSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEEC 806
A N ++++ + V + A + H S +E
Sbjct: 260 NAFNLSCKILLTTR----------------FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRI--LTVGRLWIYEARYKVEVNRVP 864
+L + L + E + + + +
Sbjct: 304 K--SLLL-------------KYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLAT-- 343
Query: 865 AGNW--VLIEGIDQPIVKTSTITDLITNE--DMY----IFR-----PLKFNTQSVIKIAV 911
NW V + + I+++S + L E M+ +F P ++ +
Sbjct: 344 WDNWKHVNCDKLTT-IIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTI-----LLSLIW 396
Query: 912 EPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEID 971
V S++ +++ L K S L+ + +ES + + + Y E+
Sbjct: 397 FDVIKSDVMVVVNKLHK--YS--LVEKQPKES---------TISI----PSI---YLELK 436
Query: 972 IKVADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAED--IENQIVHIAWN 1029
+K+ + E + S + + P + +I L D + I H N
Sbjct: 437 VKLEN------EYALHRSIVDHY-NIPKTFDSDDLIPPYL------DQYFYSHIGHHLKN 483
Query: 1030 KKRLGEF--FQSKY-DWDLLAARSIWAFGPEVTGPNILVDD-----------TLPSEVDK 1075
+ F+ + D+ L + I +++ +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 1076 GLLGSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAV-IATEPLHRGGGQIIPTARRV 1134
L+ ++ D + + EE + K+ D + IA + ++V
Sbjct: 543 RLVNAILDFLPK-----------IEENLICSKY--TDLLRIAL--MAEDEAIFEEAHKQV 587
Query: 1135 A 1135
Sbjct: 588 Q 588
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 81.1 bits (201), Expect = 5e-17
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + + F++DG+PRN +L+ ++ K++ V +F+ P++V V R
Sbjct: 97 VDEKLKTPQ-CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLD--GVFYFNVPDEVLVNRI 153
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R R DDNE+ LKKR++V+ +ET P+I
Sbjct: 154 SGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLIS 213
Query: 695 FFEAKNLVKRFNAEKS 710
+++ KNL+ +A +
Sbjct: 214 YYKNKNLLINLDATQP 229
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 80.3 bits (199), Expect = 6e-17
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 32/137 (23%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + N F++DGFPR L E+ D + V++F+ + + R
Sbjct: 73 VKEKFDLGV-CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLT--SVIYFEIDDSEIIERI 129
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R G R DDN E++K R+ V++ +T P++K
Sbjct: 130 SGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVK 189
Query: 695 FFEAKNLVKRFNAEKSL 711
F+E ++KR NA+
Sbjct: 190 FYEDLGILKRVNAKLPP 206
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 79.9 bits (198), Expect = 1e-16
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 32/136 (23%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
I + N FL+DGFPR LD ++ K +L V+ F P+ + +RR
Sbjct: 84 IEKNLETPP-CKNGFLLDGFPRTVRQAEMLDDLMEKR--KEKLDSVIEFSIPDSLLIRRI 140
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R G R+DDN+++LK R+ Y+T+T P+++
Sbjct: 141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200
Query: 695 FFEAKNLVKRFNAEKS 710
++ + + +A ++
Sbjct: 201 YYSKRGIHSAIDASQT 216
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 83.3 bits (207), Expect = 3e-16
Identities = 103/448 (22%), Positives = 173/448 (38%), Gaps = 120/448 (26%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TF RV SGTL +G V Y+ R+ RL A ++ EV + AG
Sbjct: 326 TFI----RVYSGTLTSGSYV------YNTTKGRKERV---ARLLRMHANHREEVEELKAG 372
Query: 867 NWVLIEGIDQPIVKT-STITD----LITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPK 921
+ + G+ + T T+ + E + + P VI +A+EP ++ K
Sbjct: 373 DLGAVVGLKE--TITGDTLVGEDAPRVILESIEVPEP-------VIDVAIEPKTKADQEK 423
Query: 922 MLDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVA 980
+ L ++ + P E+G+ ++ G GEL+L+ ++ L++ + +D V P VA
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK-VDANVGKPQVA 482
Query: 981 FCETVVETSSLKCFAETPNKR--------NKITMIAEPLEKGLAEDIENQIVHIAWNKKR 1032
+ ET+ + E R + + EPL +G + N IV
Sbjct: 483 YRETITKPVD----VEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIV-------- 530
Query: 1033 LGEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQG 1088
G I P E V KG+ +++ + G
Sbjct: 531 ---------------------------GGVI------PKEYIPAVQKGIEEAMQSGPLIG 557
Query: 1089 FQWGTREGPLCEEPIRNVKFKILD--------AVIATEPLHRGGGQIIPTARRVAY-SAF 1139
F P+ ++K + D + +A + A +A A
Sbjct: 558 F------------PVVDIKVTLYDGSYHEVDSSEMAFK-----------IAGSMAIKEAV 594
Query: 1140 LMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDS 1199
P ++EP + VEV P + + V L RRG + P + + I+AF+P +
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 1200 FGFETDLRTHTQGQAFCLSVFHHWQIVP 1227
FG+ TDLR+ TQG+ + F H+Q VP
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHYQEVP 680
Score = 37.5 bits (88), Expect = 0.037
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252
PGHV+F+ EV +MR+ DG ++ D+++GV
Sbjct: 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Score = 30.2 bits (69), Expect = 6.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 20 EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNK 79
E+G+ ++ G GEL+L+ ++ L++ + +D V P VA+ ET+ + E
Sbjct: 444 PETGQTIISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETITKPVD----VEGKFI 498
Query: 80 R--------NKITMIAEPLEKGLAEDIENQIV 103
R + + EPL +G + N IV
Sbjct: 499 RQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIV 530
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S
subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 82.6 bits (205), Expect = 4e-16
Identities = 104/447 (23%), Positives = 168/447 (37%), Gaps = 115/447 (25%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SG +++G V N E R GR+ A + E+ V AG
Sbjct: 334 TFF----RVYSGVVNSGDTVL----NSVKAARE--RF---GRIVQMHANKREEIKEVRAG 380
Query: 867 NWVLIEGIDQPIVKT-STITDL---ITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKM 922
+ G+ V T T+ D I E M P VI IAVEP ++ KM
Sbjct: 381 DIAAAIGLKD--VTTGDTLCDPDAPIILERMEFPEP-------VISIAVEPKTKADQEKM 431
Query: 923 LDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAF 981
L ++ K P EES + ++ G GEL+LD ++ +++ ++ ++ V P VA+
Sbjct: 432 GLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN-VEANVGKPQVAY 490
Query: 982 CETVVETSSLKCFAETPNKR--------NKITMIAEPLEKGLAEDIENQIVHIAWNKKRL 1033
ET+ + + E + + + + PLE G
Sbjct: 491 RETIRQKVTD---VEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPK--------------- 532
Query: 1034 GEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQGF 1089
G F + + G I P E VDKG+ +K + G+
Sbjct: 533 GYEFIND-----------------IKGGVI------PGEYIPAVDKGIQEQLKAGPLAGY 569
Query: 1090 QWGTREGPLCEEPIRNVKFKILD--------AVIATEPLHRGGGQIIPTARRVAY-SAFL 1140
P+ ++ ++ + +A + A +A+ F
Sbjct: 570 ------------PVVDMGIRLHFGSYHDVDSSELAFK-----------LAASIAFKEGFK 606
Query: 1141 MATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSF 1200
A P L+EP + VEV+ P + V L++RRG + I A +P + F
Sbjct: 607 KAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVK--IHAEVPLSEMF 664
Query: 1201 GFETDLRTHTQGQAFCLSVFHHWQIVP 1227
G+ T LR+ T+G+A F + P
Sbjct: 665 GYATQLRSLTKGRASYTMEFLKYDEAP 691
Score = 37.1 bits (87), Expect = 0.039
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252
PGHV+F+ EV +MR+ DG V+ A GV
Sbjct: 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGV 119
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A
{Staphylococcus aureus}
Length = 693
Score = 82.5 bits (205), Expect = 4e-16
Identities = 98/447 (21%), Positives = 175/447 (39%), Gaps = 119/447 (26%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
TFF RV SGT+ +G V + + R+ GRL A + E++ V +G
Sbjct: 326 TFF----RVYSGTMTSGSYV------KNSTKGKRERV---GRLLQMHANSRQEIDTVYSG 372
Query: 867 NWVLIEGIDQPIVKT-STITDL---ITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKM 922
+ G+ T T+ I E M P VI ++VEP + ++ KM
Sbjct: 373 DIAAAVGLKD--TGTGDTLCGEKNDIILESMEFPEP-------VIHLSVEPKSKADQDKM 423
Query: 923 LDGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAF 981
L K+ + P EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V++
Sbjct: 424 TQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSY 482
Query: 982 CETVVETSSLKCFAETPNKR--------NKITMIAEPLEKGLAEDIENQIVHIAWNKKRL 1033
ET ++ + R + + P E G + EN IV
Sbjct: 483 RETFKSSAQ----VQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIV--------- 529
Query: 1034 GEFFQSKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSE----VDKGLLGSVKDSIVQGF 1089
G + P E V+ GL ++++ ++ G+
Sbjct: 530 --------------------------GGVV------PREYIPSVEAGLKDAMENGVLAGY 557
Query: 1090 QWGTREGPLCEEPIRNVKFKILD--------AVIATEPLHRGGGQIIPTARRVAY-SAFL 1140
P+ +VK K+ D + +A + A +A A
Sbjct: 558 ------------PLIDVKAKLYDGSYHDVDSSEMAFK-----------IAASLALKEAAK 594
Query: 1141 MATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSF 1200
P ++EP + V ++ P + + + + RRG V P + + + A++P + F
Sbjct: 595 KCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQV--VNAYVPLSEMF 652
Query: 1201 GFETDLRTHTQGQAFCLSVFHHWQIVP 1227
G+ T LR++TQG+ F H+ VP
Sbjct: 653 GYATSLRSNTQGRGTYTMYFDHYAEVP 679
Score = 37.5 bits (88), Expect = 0.036
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGV 252
PGHV+F+ EV ++R+ DG V +DA GV
Sbjct: 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGV 112
Score = 29.8 bits (68), Expect = 8.3
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 20 EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETSSLKCFAETPNK 79
EE+G+ ++ G GEL+LD ++ ++K ++ ++ V P+V++ ET ++ +
Sbjct: 443 EETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRETFKSSAQ----VQGKFS 497
Query: 80 R--------NKITMIAEPLEKGLAEDIENQIV 103
R + + P E G + EN IV
Sbjct: 498 RQSGGRGQYGDVHIEFTPNETGAGFEFENAIV 529
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 77.3 bits (191), Expect = 6e-16
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 33/132 (25%)
Query: 604 ITDLITNEDITSNKFLIDGFPRN--Q-NNLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + + D N +L+DG+PR+ Q L+ + + D P+++ V R
Sbjct: 73 VKERLRQPDAQENGWLLDGYPRSYSQAMALETLE------IRPDTFILLDVPDELLVERV 126
Query: 661 LKR----------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKFFEA 698
+ R + + R DD EE +K R+ Y ++ +
Sbjct: 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTY-- 184
Query: 699 KNLVKRFNAEKS 710
+N++ + + +
Sbjct: 185 ENIIVKVQGDAT 196
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 76.9 bits (190), Expect = 1e-15
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 38/138 (27%)
Query: 604 ITDLITN--EDITSNKFLIDGFPRN--Q-NNLDGWNKEMADKVELLYVLFFDCPEDVCVR 658
+T L + +++T +L+DGFPR Q LD ++ V+ + P +V +
Sbjct: 71 MTRLALHELKNLTQYSWLLDGFPRTLPQAEALD-------RAYQIDTVINLNVPFEVIKQ 123
Query: 659 RCLKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPI 692
R R G R DD E++ KR+ Y +T P+
Sbjct: 124 RLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPV 183
Query: 693 IKFFEAKNLVKRFNAEKS 710
+++++ K +++ F+ ++
Sbjct: 184 LEYYQKKGVLETFSGTET 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 75.4 bits (186), Expect = 5e-15
Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 604 ITDLITNEDITSNKFLIDGFPRN--QNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCL 661
+ + N +L+DGFPR Q + + E+ V+ + P + R
Sbjct: 95 MMSELENRR--GQHWLLDGFPRTLGQA------EALDKICEVDLVISLNIPFETLKDRLS 146
Query: 662 KR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIKF 695
+R G + DD E++ R+ Y P+I+
Sbjct: 147 RRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIEL 206
Query: 696 FEAKNLVKRFNAEKS 710
++++ ++ +F+ ++
Sbjct: 207 YKSRGVLHQFSGTET 221
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 69.6 bits (171), Expect = 4e-13
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 36/136 (26%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + + D +N +L DGFPR + E V + YVL D P + R
Sbjct: 76 VKERLKEAD-CANGYLFDGFPRTIAQADAMK----EA--GVAIDYVLEIDVPFSEIIERM 128
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
R G R DD EE++KKR+ VY +T P+I
Sbjct: 129 SGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLIT 188
Query: 695 FFEAKNLVKRFNAEKS 710
++ N K+
Sbjct: 189 YYGDWARRGAENGLKA 204
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 68.3 bits (168), Expect = 7e-13
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 41/141 (29%)
Query: 604 ITDLITNEDITSNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
+ + I ED N FL+DGFPR + E V+ YVL FD P+++ V R
Sbjct: 68 VKERIAQED-CRNGFLLDGFPRTIPQADAMK----EAGINVD--YVLEFDVPDELIVDRI 120
Query: 661 LKR--------------------------GAEGSGRADDNEESLKKRISVYNTETMPIIK 694
+ R G E + R DD EE+++KR+ Y+ T P+I
Sbjct: 121 VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG 180
Query: 695 FFEAK-----NLVKRFNAEKS 710
++ + + + K
Sbjct: 181 YYSKEAEAGNTKYAKVDGTKP 201
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 3e-11
Identities = 92/554 (16%), Positives = 170/554 (30%), Gaps = 176/554 (31%)
Query: 775 PGDSDVARDMKACNPE--GRLMVH-SSKMYPTEECTFFQVLARVMSGTLHAGQEVRVLGE 831
P + A D E G+ + + SS + P++ F QVL ++ E L
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT---EF--ENCYLEG 98
Query: 832 N------YSLMDEEDSRILTVGRLWI---YEARYKVEVNRVPAGNWVLIEGIDQPIVKTS 882
N L+ E D+ ++ + I AR + N L + + +
Sbjct: 99 NDIHALAAKLLQENDTTLVKT-KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 883 TITDLITNEDMYIFRPLKFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSY-PLLTTKVE 941
I F Q N + + LR + ++Y L+ ++
Sbjct: 158 AI----------------FGGQG---------NTDDY---FEELRDLYQTYHVLVGDLIK 189
Query: 942 ESGEHVVLGTGELYLDCVMHDLRKMYSE-IDIKVADPVVAFCETVVETSSLKCFAETPNK 1000
S E + L D K++++ ++I + + E T P
Sbjct: 190 FSAETL------SELIRTTLDAEKVFTQGLNI------LEWLENPSNTPDKDYLLSIP-- 235
Query: 1001 RNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLG----EFFQ-----SKYDWDLLAARSI 1051
I+ PL G+ Q+ H K LG E + + L+ A +I
Sbjct: 236 ------ISCPL-IGVI-----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 1052 ------------------WAF--GPEV--TGPNILVDDTLPSEVDKGLLGSVKDSIVQGF 1089
F G PN +LP + ++DS+
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----SLPPSI-------LEDSLENN- 331
Query: 1090 QWGTREGPLCEEP---IRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRL 1146
EG P I N+ + + + H +P ++V S L+ +
Sbjct: 332 -----EGVPS--PMLSISNLTQEQVQDYVNKTNSH------LPAGKQVEIS--LVNGAK- 375
Query: 1147 MEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQD-APVPGS---PLYTIKAFIP------- 1195
V V P + + L K + D + +P S ++ + F+P
Sbjct: 376 ----NLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHS 429
Query: 1196 -----AIDSFGFETDLRTHT---QGQAFCLSVFH-----HWQIVPGDPLDK---SIVIRP 1239
A D DL + + + V+ +++ G ++ I+ P
Sbjct: 430 HLLVPASDL--INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 1240 LE-----PQPATHL 1248
++ ATH+
Sbjct: 488 VKWETTTQFKATHI 501
Score = 61.2 bits (148), Expect = 2e-09
Identities = 99/639 (15%), Positives = 177/639 (27%), Gaps = 209/639 (32%)
Query: 409 LHHGKTTMIDCLI---RQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDV 465
L HG ++ ++ + Q L+ + F I P D
Sbjct: 11 LSHGS---LEHVLLVPTASFFIASQ------LQ--EQ-FN------KILPEPTEGFAAD- 51
Query: 466 KGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSKKAAHASAQRSF 525
D P +P L+ +L G V
Sbjct: 52 ----------DEPTTPAELVG------KFL-------GYVSSLVEPSKVGQFDQVLNLCL 88
Query: 526 VEF---VL--EPVYKLVAQVVGDVDSSLPAVLD------QLGIHMNKEESKINIRPLLRL 574
EF L ++ L A+++ + D++L + I + K + L R
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 575 VYKVEVNRVPA-----GNWVLIEG-ID--QPIVKTST--ITDLITN----------EDIT 614
V ++ A GN + + + + +T + DLI +
Sbjct: 149 V-GEGNAQLVAIFGGQGN---TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 615 SNKFLIDGFPRNQNNLDGW--NKEMADKVELL-----------------YVLFFDC---- 651
+ K G N+ W N + L YV+
Sbjct: 205 AEKVFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT--AKLLG 257
Query: 652 --PEDVCVRRCLKRGAEGSGR---------ADDNEESLKKRISVYNTETMPIIKFF---E 697
P + +R L +GA G + D+ ES + + FF
Sbjct: 258 FTPGE--LRSYL-KGATGHSQGLVTAVAIAETDSWESFFV-----SVRKAITVLFFIGVR 309
Query: 698 AKNLVKRFNAEKSLVEMCVKHIPSPAENAETKVSYMY--TGPGDSDVARDMKACN---PE 752
+ S++E + EN E S M + V + N P
Sbjct: 310 CYEAYPNTSLPPSILEDSL-------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 753 GRLMVHSSKKNAETKVSYMYTGP-----GDSDVARDMKACNPEGRLMVHSSKMYPTEECT 807
G+ V S N + + +GP G + R KA + + + S+
Sbjct: 363 GK-QVEISLVNGAK--NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 808 FFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGN 867
F V + H+ L+ I L + + ++P
Sbjct: 420 FLPVASPF-----HS-----------HLLVPASDLINK--DLVKNNVSFNAKDIQIP--- 458
Query: 868 WVLIEGIDQPIVKTSTITDLITNEDMYIFRPLKFN-TQSVIK-IAVEPVN-----PSELP 920
V D D+ R L + ++ ++ I PV +
Sbjct: 459 -----------VY-----DTFDGSDL---RVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 921 KMLD----GLRKVNKSYPLLTTKVEE-SGEHVVLGTGEL 954
+LD G + LT + ++ +G V++ G L
Sbjct: 500 HILDFGPGGASGLGV----LTHRNKDGTGVRVIVA-GTL 533
Score = 59.3 bits (143), Expect = 8e-09
Identities = 80/505 (15%), Positives = 139/505 (27%), Gaps = 215/505 (42%)
Query: 6 RKVNKSYP-LLTTKVEESGEHVVL-----GTGELYLDCVMHDLRKMYSEIDIKVADPVVA 59
R +K L V E +V G + Y + +LR +Y + +V
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE----ELRDLY-----QTYHVLVG 185
Query: 60 -FCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQS 118
+ ET L T K+ +GL +I + W + +
Sbjct: 186 DLIKFSAET--LSELIRTTLDAEKV------FTQGL--NI------LEWLENP-----SN 224
Query: 119 KYDWDLLAARSIWAFGPEVTGPNI-LVD-----------DTLPSEVD---KGLLGSVKDS 163
D D L SI P ++ P I ++ P E+ KG G +
Sbjct: 225 TPDKDYLL--SI----P-ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 164 IVQGFQWGTREGPLCEEPIRNVKFKIREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPP 223
+ ++ + ++ SWE
Sbjct: 278 VT---------------------------------AVAIA-ETDSWE------------- 290
Query: 224 GHVNFSDEVTAAMRLCDGVVLF-----------------------VDAAEGV---MLNTE 257
+F V A+ + LF ++ EGV ML+
Sbjct: 291 ---SFFVSVRKAITV-----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 258 RLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHI-IDEING------------ 304
L + VQ+ + T N LP K + I +NG
Sbjct: 343 NLTQEQVQDYVNKT---NS--------HLPAG------KQVEISLVNGAKNLVVSGPPQS 385
Query: 305 LLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQALSVP- 363
L Y L R+ G Q+ + +++ F P ++ P
Sbjct: 386 L--YGLNLTLRK-AKAPSGLDQSRIPFSERK--LKFSNRFLP-------------VASPF 427
Query: 364 ---LIAP--------IKKKKFQLKEQDLPDTVYNMEFLADM-----MDTPHLIRNVALVG 407
L+ P + K +D+ VY+ +D+ + ++ + +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI-IRL 486
Query: 408 HLHHGKTTMIDCLIRQTH-----PG 427
+ TT TH PG
Sbjct: 487 PVKWETTTQFKA----THILDFGPG 507
Score = 52.4 bits (125), Expect = 1e-06
Identities = 105/648 (16%), Positives = 204/648 (31%), Gaps = 213/648 (32%)
Query: 187 FKIREGNLNSSPSIYCSNKSHSWEIVCTR---NNNKCLPPGHVNFS--DEVTAAMRLCDG 241
+ G+L + S + ++ NK LP F+ DE T L
Sbjct: 9 LTLSHGSLEHVLLV--PTASF---FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 242 VVLFVD--AAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKHII 299
+ +V + +++L + E + LE
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE----------FENCYLEGN-------------- 99
Query: 300 DEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAVEVFGPDVETVVQEEDTQA 359
+I+ L LL ++D + ++ ++ K Y + + +
Sbjct: 100 -DIHALAAKLLQEND-----TTLVKTKELI----KNYI---------TARIMAKRPFDKK 140
Query: 360 LSVPLIAPIKKKK------F--Q------LKE-QDLPDTVYNMEFLADMMDTPHLIRNVA 404
+ L + + F Q +E +DL T Y+ + D LI+ A
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YH-VLVGD------LIKFSA 192
Query: 405 LVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKA---SPVTLL 461
L LIR T + +FT +G++I +P
Sbjct: 193 --ETLSE--------LIRTTLD-------------AEKVFT---QGLNILEWLENPSNT- 225
Query: 462 LPDVKGKNYLMNIFDTPAS-PVTLLLPDVKGKNYLM--NIFD-TPGMWDIHVRKFSKK-- 515
PD +YL++I P S P+ ++ +Y++ + TPG +++ +
Sbjct: 226 -PDK---DYLLSI---PISCPLIGVIQLA---HYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 516 ---AAHASAQ-RSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEESKINIRPL 571
A A A+ S+ F + V + + VL +G+ + ++ P
Sbjct: 276 GLVTAVAIAETDSWESF-----FVSVRKAI--------TVLFFIGVRCYEAYPNTSLPPS 322
Query: 572 LRLVYKVEVNR-VPAGNWVL-IEGIDQPIVKT---STITDLITNEDI------TSNKFLI 620
+ L +E N VP+ +L I + Q V+ T + L + + + ++
Sbjct: 323 I-LEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 621 DGFPRNQNNLDGWN----KEMAD------KVEL------LYVLF------FDCP-----E 653
G P++ L G N K A ++ F F
Sbjct: 380 SGPPQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 654 DVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNL-VKRFNAEKSLV 712
D+ + +K + + ++ I VY+T +L V + + +V
Sbjct: 437 DLINKDLVKNNVSFNA------KDIQ--IPVYDTFD--------GSDLRVLSGSISERIV 480
Query: 713 EM-CVKHIPSPAENAETKVSYMYT-----GPGDSDVARDMKACNPEGR 754
+ + ET + T GPG + + N +G
Sbjct: 481 DCIIRLPV-----KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 47.0 bits (111), Expect = 5e-05
Identities = 73/483 (15%), Positives = 132/483 (27%), Gaps = 161/483 (33%)
Query: 2 LDGLRKVNKSY-PLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSE-IDIKVADPVVA 59
+ LR + ++Y L+ ++ S E + L D K++++ ++I +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETL------SELIRTTLDAEKVFTQGLNI------LE 217
Query: 60 FCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLG----EF 115
+ E T P I+ PL G+ Q+ H K LG E
Sbjct: 218 WLENPSNTPDKDYLLSIP--------ISCPL-IGVI-----QLAHYVVTAKLLGFTPGEL 263
Query: 116 FQ-----SKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQW 170
+ + L+ A +I A D+ S SV+ +I F
Sbjct: 264 RSYLKGATGHSQGLVTAVAI-AET-----------DSWES-----FFVSVRKAITVLFFI 306
Query: 171 GTR---EGPLCEEPIRNVKFKIREGNLNSSP--SIYCSNKSHSWEIVCTRNNNKCLPPG- 224
G R P P ++ + SP SI + + V N LP G
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGK 364
Query: 225 HVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAIT-----LCVNKIDR 279
V S L N + + V ++ L
Sbjct: 365 QVEIS--------------LV---------NGAK---NLV-----VSGPPQSLY-----G 388
Query: 280 LMLEL---KLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRY 336
L L L K P +I ++ R+L + A H
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV---------------ASPFHSH--L 431
Query: 337 YPTAVEVFGPDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEF------- 389
A ++ D+ + + + +P+ ++ + + + +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 390 LADMMDTPHLI---------------RN-------VALVGHLHHGKTTMIDCLIRQTHPG 427
H++ RN V + G L G
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY---------G 542
Query: 428 YRQ 430
++Q
Sbjct: 543 FKQ 545
Score = 44.7 bits (105), Expect = 3e-04
Identities = 46/317 (14%), Positives = 91/317 (28%), Gaps = 113/317 (35%)
Query: 694 KFFEAKNLVKRFNAEKSLVEM-------CVKHIPSPAENAETKVSYMYTGPGDSDV-ARD 745
A+++ R A+ + V + P ++ + G +
Sbjct: 1638 TSKAAQDVWNR--ADNHFKDTYGFSILDIVINNP-------VNLTIHFGGEKGKRIRENY 1688
Query: 746 MKAC---NPEGRLMVHSSKKNA-ETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMY 801
+G+L K E SY + +G L
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--------------KGLL-------S 1727
Query: 802 PTE---------ECTFFQVL--------ARVMSGTLHAGQEVRVLGENYS-------LMD 837
T+ E F+ L +G H+ LGE Y+ +M
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG--HS------LGE-YAALASLADVMS 1778
Query: 838 EEDS-RILTV-GRLWIYEARYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDM-Y 894
E ++ G + A + E+ R G + I+ P + + E + Y
Sbjct: 1779 IESLVEVVFYRGMT-MQVAVPRDELGRSNYG----MIAIN-P----GRVAASFSQEALQY 1828
Query: 895 IFRPLKFNTQSVIKIAVEPVN---PSE-------------LPKMLDGLRKVNKSYPLLTT 938
+ + T + VE VN ++ + +L+ ++ + ++
Sbjct: 1829 VVERVGKRTGWL----VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL--QKIDIIEL 1882
Query: 939 KVEESGEHVVLGTGELY 955
+ S E V G L+
Sbjct: 1883 QKSLSLEEV---EGHLF 1896
Score = 44.3 bits (104), Expect = 3e-04
Identities = 101/612 (16%), Positives = 182/612 (29%), Gaps = 228/612 (37%)
Query: 564 SKINIRPLLRLVY-KVEVN-RVPAGNWVLIEGIDQPIVKT-STITD-LITNEDITSN--- 616
+ RPL L + +E VP ++ + + + K T+ +++ T+
Sbjct: 2 DAYSTRPLT-LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 617 --KFLIDGFPRNQNNLDGWNKEMADKVELLYVLF--FDCPEDVCVRRCLKRGAE----GS 668
KFL G+ + ++ ++L + F+ L G + +
Sbjct: 61 VGKFL--GYVSSLVE----PSKVGQFDQVLNLCLTEFE-------NCYL-EGNDIHALAA 106
Query: 669 GRADDNEESLKKRISVYNTETMPIIK-FFEAKNLVKRFNAEKSLVEMCVKHIPSP-AENA 726
+N+ +L K +IK + A+ + KR +KS S
Sbjct: 107 KLLQENDTTLVKTKE--------LIKNYITARIMAKRPFDKKS---------NSALFRAV 149
Query: 727 ETKVSYMYT---GPGDSDVA----RDM----------------KACNPEGRLMVHSSK-- 761
+ + G G++D RD+ + + R + + K
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 762 ----------KNAETK--VSYMYTGP------GDSDVARDMKACNPEGRLMVHSSKMYPT 803
+N Y+ + P G +A + G P
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG--------FTPG 261
Query: 804 EECTFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDS------RILTVGRL-WI----Y 852
E L + G Q + V + D +S + +TV L +I Y
Sbjct: 262 E-------LRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITV--LFFIGVRCY 311
Query: 853 EA-----------RYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNE-DMYIFRPLK 900
EA +E N EG+ P++ +I++L + Y+ K
Sbjct: 312 EAYPNTSLPPSILEDSLENN----------EGVPSPML---SISNLTQEQVQDYVN---K 355
Query: 901 FNTQ----SVIKIAVEPVN-PSEL-----PKMLDG----LRKVNKSYPLLTTKVEESGEH 946
N+ ++I++ VN L P+ L G LRK L +++ S
Sbjct: 356 TNSHLPAGKQVEISL--VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 947 VVLGTGEL---------YL---------DC---------------VMH-----DLRKMYS 968
+ L L D V DLR +
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 969 EIDIKVAD-----PV-----VAFCET-VVE-----TSSLKCFAETPNKRNK----ITMI- 1007
I ++ D PV F T +++ S L RNK + +I
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT----HRNKDGTGVRVIV 529
Query: 1008 AEPLEKGLAEDI 1019
A L+ +D
Sbjct: 530 AGTLDINPDDDY 541
Score = 41.6 bits (97), Expect = 0.002
Identities = 49/270 (18%), Positives = 80/270 (29%), Gaps = 91/270 (33%)
Query: 1047 AARSIW----AFGPEVTGPNIL--VDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPLCE 1100
AA+ +W + G +IL V + P + G I + + E
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETI--- 1696
Query: 1101 EPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSA---FLMAT----PRLMEPYLFV 1153
+D + TE + + +I + + + L AT P L +
Sbjct: 1697 ----------VDGKLKTEKIFK---EINEHSTSYTFRSEKGLLSATQFTQPALT----LM 1739
Query: 1154 EVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPL--YTIKAFIPAI-DSFGFETDLRT-H 1209
E A + L K +G + DA G L Y A ++ D E+ +
Sbjct: 1740 EK--------AAFEDL-KSKGLIPADATFAGHSLGEYA--ALA-SLADVMSIESLVEVVF 1787
Query: 1210 TQGQAFCLSVFHHWQIVPGDPLDKS----IVIRPLEPQPATHLAREFMIKTRRRKGLSED 1265
+G VP D L +S I I P R S++
Sbjct: 1788 YRGMTM-------QVAVPRDELGRSNYGMIAINP----------------GRVAASFSQE 1824
Query: 1266 V------SINKFFDDPMLLELARQDVMLNY 1289
+ K L+E+ NY
Sbjct: 1825 ALQYVVERVGK--RTGWLVEIV------NY 1846
Score = 36.6 bits (84), Expect = 0.071
Identities = 57/324 (17%), Positives = 93/324 (28%), Gaps = 145/324 (44%)
Query: 778 SDVARDM--KACNPEGRLMVHSSKMYPTEECTFFQVLARV----MSGTLH-AGQEVRVLG 830
S A+D+ +A N H Y F +L V ++ T+H G++ + +
Sbjct: 1639 SKAAQDVWNRADN-------HFKDTYG------FSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 831 ENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGID---------QP-IVK 880
ENYS M E + I++ E+N QP +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFK-----EINEHSTS--YTFRSEKGLLSATQFTQPALTL 1738
Query: 881 TSTITDLITNEDMYIFRPLK----------------------------FNTQSVIKI--- 909
F LK + +S++++
Sbjct: 1739 ME----------KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 910 -------AVEP------------VNPSELPKML--DGLRKVNKSYPLLTTKVEESGEHVV 948
AV +NP + + L+ V VE G+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV----------VERVGKR-- 1836
Query: 949 LGTGELYLDCVMHDLRKMYSEIDIKVADPVVAF-CE--TVV---ETSSLKCFAETPN--K 1000
TG L V EI V + E V + +L N K
Sbjct: 1837 --TGWL----V---------EI--------VNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 1001 RNKITMIAEPLEKGLA-EDIENQI 1023
KI +I L+K L+ E++E +
Sbjct: 1874 LQKIDII--ELQKSLSLEEVEGHL 1895
Score = 34.6 bits (79), Expect = 0.29
Identities = 50/304 (16%), Positives = 99/304 (32%), Gaps = 84/304 (27%)
Query: 126 AARSIW----AFGPEVTGPNIL--VDDTLPSEVDKGLLGSVKDSIVQGFQWGTRE----G 175
AA+ +W + G +IL V + P + G I + + E G
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 176 PLCEEPI--------RNVKFKIREGNL----NSSPSIYCSNKSHSWEIVCTRNNNKCLPP 223
L E I + F+ +G L + P++ K+ ++E + ++ +P
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-AFEDLKSKGL---IPA 1755
Query: 224 -----GHVNFS-DEVTAAMRLCD--GVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVN 275
GH S E A L V+ ++ +
Sbjct: 1756 DATFAGH---SLGEYAA---LASLADVMSIESLV--------EVVFY------------- 1788
Query: 276 KIDRLMLELKLPPQDAYYKIKHIIDEIN-GLLRYLLIDDDREDGDEEMGDSQAVVLHEDK 334
R M P+D + + + IN G + + + E +G +
Sbjct: 1789 ---RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL----- 1840
Query: 335 RYYPTAVEV--FGPDVETVVQEEDTQALS--VPLIAPIKKKKFQLKEQDLPDTVYNMEFL 390
VE+ + + + V D +AL ++ IK +K + E L ++ ++E +
Sbjct: 1841 ------VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE--LQKSL-SLEEV 1891
Query: 391 ADMM 394
+
Sbjct: 1892 EGHL 1895
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 60.8 bits (148), Expect = 3e-10
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 34/115 (29%)
Query: 615 SNKFLIDGFPRNQN---NLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKR-------- 663
+ +L+DGFPRN L +E +++ +V+ P +V R + R
Sbjct: 77 KDGWLLDGFPRNTVQAQKLFEALQEK--GMKINFVIEILLPREVAKNRIMGRRICKNNPN 134
Query: 664 --------------------GAEGSGRADDNEES-LKKRISVYNTETMPIIKFFE 697
G S RADD +E + KR +Y +
Sbjct: 135 HPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAY 189
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 61.3 bits (150), Expect = 1e-09
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 394 MDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLR--YTDTLFTEQERGV 451
M+ + +RN ++ H+ HGK+T+ D L+ T E+ R DTL E+ERG+
Sbjct: 1 MEQKN-VRNFCIIAHVDHGKSTLADRLLEYTGA-----ISEREKREQLLDTLDVERERGI 54
Query: 452 SIKASPVTLLLPDVKGKNYLMNIFDTP 478
++K V + G Y +++ DTP
Sbjct: 55 TVKMQAVRMFYKAKDGNTYKLHLIDTP 81
Score = 46.7 bits (112), Expect = 5e-05
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EV+ A+ C+G +L +DA++G+ T AV++ + I +NKID
Sbjct: 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKID---- 136
Query: 283 ELKLPPQDAYYKIKHIIDEINGL 305
LP D ++K I+E+ GL
Sbjct: 137 ---LPSADV-DRVKKQIEEVLGL 155
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics,
NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1wdt_A*
Length = 665
Score = 59.8 bits (146), Expect = 4e-09
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 1138 AFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAI 1197
A P L+EP ++V AP + V V + L RRG + + + A +P
Sbjct: 563 VMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSV--VHAEVPLA 620
Query: 1198 DSFGFETDLRTHTQGQAFCLSVFHHWQIVP 1227
+ + L T G F H+ VP
Sbjct: 621 EVLEYYKALPGLTGGAGAYTLEFSHYAEVP 650
Score = 57.2 bits (139), Expect = 3e-08
Identities = 32/183 (17%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 807 TFFQVLARVMSGTLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAG 866
+ R+ G L G + S + R+ L++ + +EV AG
Sbjct: 301 AYL----RLYRGRLKPGDSL------QSEAGQV--RL---PHLYVPMGKDLLEVEEAEAG 345
Query: 867 NWVLIEGIDQPIVKTSTITDLITNEDMYI---FRPLKFNTQSVIKIAVEPVNPSELPKML 923
+ + + ++ + + + +A+ P ++ ++
Sbjct: 346 FVLGVPKA-----EGLHRGMVLWQGEKPESEEVPFARL-PDPNVPVALHPKGRTDEARLG 399
Query: 924 DGLRKVNKSYPLLTTKV-EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFC 982
+ LRK+ + P L + EE+GE ++ G GEL+L L+ ++++ + P V +
Sbjct: 400 EALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDY--GVEVEFSVPKVPYR 457
Query: 983 ETV 985
ET+
Sbjct: 458 ETI 460
Score = 47.5 bits (114), Expect = 3e-05
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDR 279
PG+ +F E+ A+ D ++ V A GV + TER A + + + V K+D+
Sbjct: 82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138
Score = 38.3 bits (90), Expect = 0.019
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 24/96 (25%)
Query: 393 MMDTP-HLIRNVALVGHLHHGKTTMIDCL---------IRQTHPGYRQPAEEKNLRYTDT 442
M +IR VALVGH GKTT+ + L + G TD
Sbjct: 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTT---------TDY 51
Query: 443 LFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478
+ +++ LL + + + + D P
Sbjct: 52 TPEAKLHRTTVRTGVAPLLF-----RGHRVFLLDAP 82
Score = 31.7 bits (73), Expect = 1.9
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 20 EESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 64
EE+GE ++ G GEL+L L+ ++++ + P V + ET+
Sbjct: 418 EETGELLLWGHGELHLATAKERLQDY--GVEVEFSVPKVPYRETI 460
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 59.4 bits (145), Expect = 6e-09
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
IRN +++ H+ HGK+T+ D +I+ E + D++ E+ERG++IKA VT
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGG---LSDREMEAQVLDSMDLERERGITIKAQSVT 60
Query: 460 LLLPDVKGKNYLMNIFDTP 478
L G+ Y +N DTP
Sbjct: 61 LDYKASDGETYQLNFIDTP 79
Score = 47.1 bits (113), Expect = 4e-05
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLML 282
PGHV+FS EV+ ++ C+G +L VDA +GV T A++ + + +NKID
Sbjct: 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID---- 134
Query: 283 ELKLPPQDAYYKIKHIIDEINGL 305
LP D ++ I++I G+
Sbjct: 135 ---LPAADP-ERVAEEIEDIVGI 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 46.1 bits (109), Expect = 2e-05
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 603 TITDLITNEDITSNKFLIDG--FPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRC 660
ITDL N + N ++D FP L + D VE+ ++ + +RR
Sbjct: 61 NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFI-ILWTNREELLRRD 119
Query: 661 LKRGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNL 701
R + + E + + + ++ + F+ +L
Sbjct: 120 ALR-----KKDEQMGERCLELVEEFESKGIDERYFYNTSHL 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 46.9 bits (112), Expect = 4e-05
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 223 PGHVNFSDEVTAAMR-----LCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKI 277
PGH F+ +R L D +L VD EG T+ L + + NKI
Sbjct: 78 PGHEAFT-----TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKI 132
Query: 278 DRL 280
DR+
Sbjct: 133 DRI 135
Score = 31.9 bits (73), Expect = 1.8
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTH 425
V+++GH+ HGKTT++D IR +
Sbjct: 8 VSVLGHVDHGKTTLLDH-IRGSA 29
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 43.4 bits (103), Expect = 4e-04
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER------LL--KHAVQEKMAITLCV 274
PGH ++ + CD ++ VDA GV T R LL KH V + +
Sbjct: 112 PGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIV-------VAI 164
Query: 275 NKID 278
NK+D
Sbjct: 165 NKMD 168
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 41.1 bits (97), Expect = 6e-04
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 223 PGHVNFSDEVTAAMR-----LCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKI 277
PGH F+ MR + D V+L V A +GVM T + HA + I + +NK+
Sbjct: 63 PGHEAFT-----TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKM 117
Query: 278 DR 279
D+
Sbjct: 118 DK 119
Score = 31.1 bits (71), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTH 425
V ++GH+ HGKTT++D IR +
Sbjct: 11 VTIMGHVDHGKTTLLDA-IRHSK 32
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 39.7 bits (93), Expect = 0.007
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 223 PGHVNFSDE----VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKID 278
PGH +F+++ +TA D ++ +DAA+GV T +L++ I +NK+D
Sbjct: 90 PGHADFTEDTYRTLTAV----DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145
Query: 279 R 279
R
Sbjct: 146 R 146
Score = 31.2 bits (71), Expect = 2.3
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE----KNLRYT--DTLFTEQERGVSIK 454
R A++ H GKTT+ + L+ G Q A K R+ D + E++RG+S+
Sbjct: 14 RTFAIISHPDAGKTTLTEKLL--LFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT 71
Query: 455 ASPVTLLLPDVKGKNYLMNIFDTP 478
S + K+YL+N+ DTP
Sbjct: 72 TSVMQFPY-----KDYLINLLDTP 90
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 38.9 bits (91), Expect = 0.010
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLI-------RQTHPGYRQPAEEKNLR------YTDTL 443
H+ NV ++GH+ GK+T LI ++T + + A E D L
Sbjct: 6 SHI--NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKL 63
Query: 444 FTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478
E+ERG++I + L + Y + + D P
Sbjct: 64 KAERERGITIDIA-----LWKFETPKYQVTVIDAP 93
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative,
midwest center for structural genomics, GTP-BIN
nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio
parahaemolyticus}
Length = 332
Score = 38.3 bits (89), Expect = 0.012
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 1145 RLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFET 1204
+LMEP+ V + + + + R G + AP G + +P+ GF+T
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAP-DGKGRVRMDFIMPSRGLIGFQT 180
Query: 1205 DLRTHTQGQAFCLSVFHHWQ 1224
+ T T G F H+
Sbjct: 181 EFMTLTSGSGLLYHTFDHYG 200
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 38.5 bits (90), Expect = 0.014
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 223 PGHVNFSDE----VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKID 278
PGH +FS++ +TA D ++ +DAA+GV T +L++ I +NK+D
Sbjct: 90 PGHEDFSEDTYRTLTAV----DCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 279 R 279
R
Sbjct: 146 R 146
Score = 31.2 bits (71), Expect = 2.3
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE----KNLRYT--DTLFTEQERGVSIK 454
R A++ H GKTT+ + ++ Q A + ++ D + E++RG+SI
Sbjct: 14 RTFAIISHPDAGKTTITEKVL--LFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 455 ASPVTLLLPDVKGKNYLMNIFDTP 478
S + + L+N+ DTP
Sbjct: 72 TSVMQFPY-----HDCLVNLLDTP 90
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 38.0 bits (89), Expect = 0.017
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 393 MMDTPHLIRNVALVGHLHHGKTTMIDCLI-------RQTHPGYRQPAEEKNLR------Y 439
M PHL N+ ++GH+ HGK+T++ L+ +T + A++
Sbjct: 1 MSQKPHL--NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFL 58
Query: 440 TDTLFTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478
D L E+ERGV+I + + K Y I D P
Sbjct: 59 LDRLKEERERGVTINLT-----FMRFETKKYFFTIIDAP 92
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 37.7 bits (88), Expect = 0.022
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 366 APIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLI---- 421
P + Q+ D E L DM H+ N+ +GH+ GK+T+ ++
Sbjct: 15 EPATVTEDATDLQNEVDQ----ELLKDMYGKEHV--NIVFIGHVDAGKSTLGGNILFLTG 68
Query: 422 ---RQTHPGYRQPAEEKNLR------YTDTLFTEQERGVSI 453
++T + A+E D+ E+E+G ++
Sbjct: 69 MVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTV 109
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 36.8 bits (86), Expect = 0.043
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 223 PGHVNFSDEVTAAMR-----LCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKI 277
PGH FS AMR + D V+L V A +GVM T ++HA + I L +NK
Sbjct: 60 PGHAAFS-----AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKC 114
Query: 278 DR 279
D+
Sbjct: 115 DK 116
Score = 29.9 bits (68), Expect = 7.0
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTH 425
V ++GH+ HGKTT++D +R+T
Sbjct: 7 VTIMGHVDHGKTTLLDK-LRKTQ 28
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 35.6 bits (82), Expect = 0.053
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 611 EDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGR 670
+ + DG R+ ++ + + + D V Y++ P + +R ++R R
Sbjct: 74 GTSNHDLVVFDGV-RSLAEVEEFKRLLGDSV---YIVAVHSPPKIRYKRMIER-----LR 124
Query: 671 ADDNE--ESLKKRI 682
+DD++ L +R
Sbjct: 125 SDDSKEISELIRRD 138
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 36.3 bits (85), Expect = 0.060
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 223 PGHVNFSDEVTAAMR-----LCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKI 277
PGH F+ +MR D VVL V A +GVM T ++HA ++ + + VNKI
Sbjct: 59 PGHAAFT-----SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKI 113
Query: 278 DR 279
D+
Sbjct: 114 DK 115
Score = 30.2 bits (69), Expect = 5.1
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTH 425
V ++GH+ HGKT++++ IR T
Sbjct: 7 VTIMGHVDHGKTSLLEY-IRSTK 28
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 35.5 bits (83), Expect = 0.086
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 232 VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDA 291
++++ + V+ V+ + E +L + K + L VNK+D + + L P
Sbjct: 82 ASSSIGDVELVIFVVEGTRWTPDD-EMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ 140
Query: 292 YYKIKHIIDEI 302
+ + +I
Sbjct: 141 FLASQMNFLDI 151
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 34.4 bits (80), Expect = 0.21
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 230 DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQE-KMAITLCVNKIDRLMLELKLPP 288
+ ++ D ++ +DA EG E + ++ ++ + + +NKID++ + P
Sbjct: 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLP 143
Query: 289 Q-DAYYKIKHIIDEI 302
D +K + EI
Sbjct: 144 LIDEIHKKHPELTEI 158
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 34.7 bits (80), Expect = 0.23
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 346 PDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVAL 405
+ E Q + + + +K ++K+Q+ D V E P + ++ +
Sbjct: 125 KNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVV--HLVV 182
Query: 406 VGHLHHGKTTMIDCLI-------RQTHPGYRQPAEEKN---LRYT---DTLFTEQERGVS 452
GH+ GK+TM+ ++ ++ A Y DT E+ RGV+
Sbjct: 183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVT 242
Query: 453 I 453
+
Sbjct: 243 M 243
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 34.0 bits (79), Expect = 0.31
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 234 AAMRLCDGVVLFVDAAEGVMLNTE---RLLKHAVQEKMAITLCVNKID 278
++ D VV+ +DA +G+ T R+ + A + NK D
Sbjct: 259 DSIEKADVVVIVLDATQGI---TRQDQRMAGLMERRGRASVVVFNKWD 303
Score = 29.4 bits (67), Expect = 9.3
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 232 VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDA 291
+R D V+ VD G+ E L + + L NK + L + +
Sbjct: 75 TLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPEL 134
Query: 292 Y 292
Y
Sbjct: 135 Y 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 33.6 bits (78), Expect = 0.47
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 234 AAMRLCDGVVLFVDAAEGVMLNTE---RLLKHAVQEKMAITLCVNKID 278
A+ + V + +D EG+ E R+ +A + A+ + VNK D
Sbjct: 253 KAIDRSEVVAVVLDGEEGI---IEQDKRIAGYAHEAGKAVVIVVNKWD 297
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 33.5 bits (77), Expect = 0.49
Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 346 PDVETVVQEEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDT--PHLIRNV 403
+ + EE+++ A +K + + +P ++ + + PHL +
Sbjct: 113 DRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHL--SF 170
Query: 404 ALVGHLHHGKTTMIDCLI-------RQTHPGYRQPAEEKNLR------YTDTLFTEQERG 450
++GH+ GK+T++ L+ + ++ +E D E+ERG
Sbjct: 171 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG 230
Query: 451 VSI 453
V++
Sbjct: 231 VTV 233
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 33.0 bits (76), Expect = 0.80
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 27/113 (23%)
Query: 354 EEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGK 413
+E T P K KK + PHL + ++GH+ GK
Sbjct: 1 DEKTVQRYYKTTVPTKPKKPHDISAFVKS------------ALPHL--SFVVLGHVDAGK 46
Query: 414 TTMIDCLI-------RQTHPGYRQPAEEKNLR------YTDTLFTEQERGVSI 453
+T++ L+ + ++ +E D E+ERGV++
Sbjct: 47 STLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV 99
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 31.9 bits (73), Expect = 1.7
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 17/58 (29%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
+ N+ +VGH+ HGKT++ L +TD E RG+SI+
Sbjct: 7 AEV--NIGMVGHVDHGKTSLTKALTGV---------------WTDRHSEELRRGISIR 47
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 31.8 bits (72), Expect = 1.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
PH+ NV +GH+ HGKTT+ + Y + D E+ RG++I S
Sbjct: 295 PHV--NVGTIGHVDHGKTTLTAAITTVLAKTY--GGAARAFDQIDNAPEEKARGITINTS 350
Query: 457 PV 458
V
Sbjct: 351 HV 352
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 31.4 bits (72), Expect = 2.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 17/58 (29%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
+ N+ +VGH+ HGKTT+ L +TDT E RG++IK
Sbjct: 9 AEV--NIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIK 49
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 31.6 bits (72), Expect = 2.1
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 397 PHLIR---NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
PH+ N+ + GH+ HGKTT+ L E + D L Q+RG++I
Sbjct: 13 PHMDFKNINLGIFGHIDHGKTTLSKVL-----------TEIASTSAHDKLPESQKRGITI 61
Query: 454 KASPVTLLLPD 464
L +
Sbjct: 62 DIGFSAFKLEN 72
Score = 31.2 bits (71), Expect = 2.3
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 223 PGHVNF-SDEVTAA--MRLCDGVVLFVDAAEGVMLNTER--LLKHAVQEKMAITLCVNKI 277
PGH + V+AA + D ++ VDA EG T L+ + + + K
Sbjct: 81 PGHADLIRAVVSAADII---DLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVI--TKS 135
Query: 278 DRL---MLEL 284
D ++
Sbjct: 136 DNAGTEEIKR 145
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 31.4 bits (72), Expect = 2.2
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 10/39 (25%)
Query: 1126 QIIPTA---RRVAYSAFLMATPRLMEPYLFVEVQAPADC 1161
+II + ++ S FLM F ADC
Sbjct: 148 RIIGLQPGCKTLS-SIFLMLPQYSGPALGF------ADC 179
>3sw0_X H factor 1, complement factor H; innate immune response, sushi
domains, cofactor in the inact of C3B, C3B, human
plasma, immune system; 1.80A {Homo sapiens}
Length = 188
Score = 30.3 bits (68), Expect = 2.4
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 158 GSVKDSIVQGFQWGTREGPLCEEPIRNVKFKIREG-NLNSSPSIYCSNKSHSWEIVCTRN 216
+ + + G R V+++ R + + C N + + C +
Sbjct: 14 AYIVSRQMSKYPSGER-----------VRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDS 62
Query: 217 NNKCLPPGHVNFSD 230
KC PP ++ D
Sbjct: 63 TGKCGPPPPIDNGD 76
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 30.9 bits (71), Expect = 2.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 230 DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKH--AVQEKMAITLCVNKIDRL 280
EV A+ + VV VD E + + + K+ I L NK+D
Sbjct: 78 QEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 30.6 bits (70), Expect = 3.1
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
PH+ NV +GH+ HGKTT+ + + G A+ K D E+ RG++I A+
Sbjct: 2 PHV--NVGTIGHVDHGKTTLTAAITKILAEGG--GAKFKKYEEIDNAPEERARGITINAA 57
Query: 457 PV 458
V
Sbjct: 58 HV 59
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 3.3
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 230 DEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCV-NKIDRLMLELKLPP 288
+ + C ++ + A++ L R L++ ++ + + N D++ L P
Sbjct: 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPD 251
Query: 289 QDAYYK--IKHIIDEINGLLRYLLIDDDREDGDE 320
+ + N L + + DE
Sbjct: 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDE 285
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 30.6 bits (70), Expect = 3.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
PH+ NV +GH+ HGKTT+ L E K+ D E+ RG++I +
Sbjct: 10 PHV--NVGTIGHVDHGKTTLTAALTYVAAAENPN-VEVKDYGDIDKAPEERARGITINTA 66
Query: 457 PV 458
V
Sbjct: 67 HV 68
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.4 bits (68), Expect = 3.9
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 629 NLDGWNK--EMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKK 680
+ + W K + L V D + R KR + SG E +K
Sbjct: 273 DQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGLVTTIAEGREK 325
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical
domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Length = 182
Score = 29.8 bits (67), Expect = 3.9
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 80 RNKITMIAEPLEKGLAEDIENQIVHIAWN-KKRLGEFFQSKYDWDLLAARSIWAFGPEVT 138
+ + +AE LE E +E+ AW + YD AF V+
Sbjct: 108 YSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYD----------AFKHAVS 157
Query: 139 GPNILVDDTLPSEVDKGLLGSVK 161
P+IL L + + L+ ++
Sbjct: 158 DPSILDSLDLNEDEREVLINNIN 180
Score = 29.8 bits (67), Expect = 3.9
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 1001 RNKITMIAEPLEKGLAEDIENQIVHIAWN-KKRLGEFFQSKYDWDLLAARSIWAFGPEVT 1059
+ + +AE LE E +E+ AW + YD AF V+
Sbjct: 108 YSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYD----------AFKHAVS 157
Query: 1060 GPNILVDDTLPSEVDKGLLGSVK 1082
P+IL L + + L+ ++
Sbjct: 158 DPSILDSLDLNEDEREVLINNIN 180
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.7 bits (67), Expect = 4.1
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 9/43 (20%)
Query: 629 NLDGWNKEMADKVELL-------YVLFFDCPEDVCVRRCLKRG 664
NL+ FD P V+R KRG
Sbjct: 87 NLNPE--RRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 4.2
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 16/42 (38%)
Query: 675 EESLKK---RISVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
+++LKK + +Y ++ P + A K+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-------------AIKATME 47
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 30.2 bits (69), Expect = 4.6
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 1126 QIIPTA---RRVAYSAFLMATPRLMEPYLFVEVQAPADC 1161
QII T R + FLM E Y+F ADC
Sbjct: 146 QIIKTKPGISRTS-GVFLMNRENTSERYVF------ADC 177
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP:
b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O*
2c7c_O 2c7d_O
Length = 97
Score = 28.3 bits (64), Expect = 4.7
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 814 RVMSGTLHAGQEVRVLGENYSLMDEEDSRILTV 846
V+ + + ++ E +M E D IL +
Sbjct: 64 IVIFNDGYGVKSEKIDNEEVLIMSESD--ILAI 94
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 30.3 bits (69), Expect = 5.2
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 397 PHLIRNVALVGHLHHGKTT 415
P + N+ +VGH+ HGKTT
Sbjct: 7 PEV--NIGVVGHVDHGKTT 23
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural
genomics, unknown function; HET: NHE; 1.40A {Pyrococcus
horikoshii} SCOP: d.269.1.1
Length = 124
Score = 28.6 bits (64), Expect = 5.8
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 847 GRLWIYEARYKVEVNRVPAGNWV 869
G+ +++E K R+ +G++
Sbjct: 91 GKAFLWEWGSKPRGKRIKSGDFD 113
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.8 bits (66), Expect = 6.5
Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 21/133 (15%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFT-----EQER---GVSIK 454
V + G GKT+ I L+ Q PG R E T F E E G ++
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPE-----PTTDCFVAVMHGETEGTVPGNALV 122
Query: 455 ASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVRKFSK 514
P N +N F P +L ++I DTPG+ ++ S+
Sbjct: 123 VDPEKPFRKLNPFGNTFLNRFMCAQLPNQVL--------ESISIIDTPGILSGAKQRVSR 174
Query: 515 KAAHASAQRSFVE 527
+ R F E
Sbjct: 175 GYDFPAVLRWFAE 187
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 6.6
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 412 GKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVTLLLPDVKGKNYL 471
GKTT + + + G + TLF + L + +VKG
Sbjct: 26 GKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP----------LDIGEVKGFKTR 75
Query: 472 MNIFDTP 478
+++ P
Sbjct: 76 FHLYTVP 82
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 28.6 bits (65), Expect = 7.4
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 232 VTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKID 278
V A+ + V+ VD + + ++ ++ + L K+D
Sbjct: 73 VDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVD 119
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.2 bits (65), Expect = 8.9
Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 5/93 (5%)
Query: 634 NKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGR-ADDNEESLKKRISVYNTETMPI 692
+A +L + ++ + + R G + + + +R+ Y +P
Sbjct: 141 EVNIAGLADLK--IGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQ 198
Query: 693 IKFFEAKNLVKRFNAEKSLVEMCVKHIPSPAEN 725
+ +R + + IP+ E+
Sbjct: 199 FSQTDI--NFQRVPVVDTSNPFIARWIPTADES 229
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.3 bits (65), Expect = 8.9
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIK 454
N+ VG GK+T++D L G + ++ + QE V +K
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,918,215
Number of extensions: 1263170
Number of successful extensions: 2362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2264
Number of HSP's successfully gapped: 139
Length of query: 1291
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1186
Effective length of database: 3,770,088
Effective search space: 4471324368
Effective search space used: 4471324368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)