RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15088
(1291 letters)
>d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 183 bits (466), Expect = 5e-54
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
Query: 979 VAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQ 1038
VA+ ETV SS +++PNK N+I + AEP+++ ++ IEN I++ + K
Sbjct: 1 VAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMA 60
Query: 1039 SKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPL 1098
Y WD+ AR IW FGP+ GPN+++D T + L +KDS+V FQW T+EGP+
Sbjct: 61 DDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQY----LHEIKDSVVAAFQWATKEGPI 116
Query: 1099 CEEPIRNVKFKILDAVIATEPLHRGGGQIIPTARRVAYSAFLMATPRL 1146
E +R+V+ ILD + + +HRGGGQIIPT RR Y+ FL+A P++
Sbjct: 117 FGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 164
Score = 135 bits (342), Expect = 3e-37
Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Query: 58 VAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQIVHIAWNKKRLGEFFQ 117
VA+ ETV SS +++PNK N+I + AEP+++ ++ IEN I++ + K
Sbjct: 1 VAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMA 60
Query: 118 SKYDWDLLAARSIWAFGPEVTGPNILVDDTLPSEVDKGLLGSVKDSIVQGFQWGTREGPL 177
Y WD+ AR IW FGP+ GPN+++D T + L +KDS+V FQW T+EGP+
Sbjct: 61 DDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQY----LHEIKDSVVAAFQWATKEGPI 116
Query: 178 CEEPIRNVKFKIREGNLNSSPS 199
E +R+V+ I + L++
Sbjct: 117 FGEEMRSVRVNILDVTLHADAI 138
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 124 bits (313), Expect = 8e-34
Identities = 43/128 (33%), Positives = 69/128 (53%)
Query: 759 SSKKNAETKVSYMYTGPGDSDVARDMKACNPEGRLMVHSSKMYPTEECTFFQVLARVMSG 818
S + +Y GP D +K C+P+ LM++ SKM PT + F RV +G
Sbjct: 1 SPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAG 60
Query: 819 TLHAGQEVRVLGENYSLMDEEDSRILTVGRLWIYEARYKVEVNRVPAGNWVLIEGIDQPI 878
T+ +GQ+VR+ G NY ++D I + R+ + R+ ++ PAGN + + GIDQ +
Sbjct: 61 TVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFL 120
Query: 879 VKTSTITD 886
+KT T+T
Sbjct: 121 LKTGTLTT 128
Score = 41.2 bits (96), Expect = 1e-04
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 576 YKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITS 615
+ ++ PAGN + + GIDQ ++KT T+T T ++
Sbjct: 98 FVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 137
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 116 bits (291), Expect = 4e-31
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 1148 EPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLR 1207
EP VE+Q P V +Y+VL K+RG V + PG+PL+T+KA++P +SFGF +LR
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 1208 THTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDV- 1266
T GQAF VF HW + DPLD T A E ++ R+R G+ E+V
Sbjct: 61 QATGGQAFPQMVFDHWSTLGSDPLDP------------TSKAGEIVLAARKRHGMKEEVP 108
Query: 1267 SINKFFD 1273
+++D
Sbjct: 109 GWQEYYD 115
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 92.2 bits (229), Expect = 5e-23
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1146 LMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETD 1205
++EP + VEV P + + V L RRG + P I+AF+P + FG+ TD
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGM--EPRGNAQVIRAFVPLAEMFGYATD 59
Query: 1206 LRTHTQGQAFCLSVFHHWQIVPGDPLDKSI 1235
LR+ TQG+ + F H+Q VP +K I
Sbjct: 60 LRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 89
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 88.8 bits (220), Expect = 6e-22
Identities = 33/79 (41%), Positives = 58/79 (73%)
Query: 900 KFNTQSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCV 959
KF+ V+++AVE N ++LPK+++GL++++KS P + T + ESGEH+V GTGEL+L+
Sbjct: 1 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEIC 60
Query: 960 MHDLRKMYSEIDIKVADPV 978
+ DL ++ + +K++ PV
Sbjct: 61 LQDLEHDHAGVPLKISPPV 79
Score = 62.6 bits (152), Expect = 1e-12
Identities = 23/57 (40%), Positives = 42/57 (73%)
Query: 1 MLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPV 57
+++GL++++KS P + T + ESGEH+V GTGEL+L+ + DL ++ + +K++ PV
Sbjct: 23 LVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPV 79
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 86.1 bits (213), Expect = 8e-21
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 1146 LMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETD 1205
L+EP ++V AP + V V + L RRG + + A +P + +
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGAL--SVVHAEVPLAEVLEYYKA 59
Query: 1206 LRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKG 1261
L T G F H+ VP + +++ R ++G
Sbjct: 60 LPGLTGGAGAYTLEFSHYAEVPPHLAQR-------------------IVQERAQEG 96
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 92.1 bits (228), Expect = 2e-20
Identities = 67/379 (17%), Positives = 134/379 (35%), Gaps = 82/379 (21%)
Query: 385 YNMEFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLF 444
+ ++ + +MD +RN++++ H+ HGK+T+ D L+++ G A+ R+TDT
Sbjct: 2 FTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRA--GIISAAKAGEARFTDTRK 59
Query: 445 TEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGM 504
EQERG++IK++ ++L + V + G ++L+N+ D+PG
Sbjct: 60 DEQERGITIKSTAISL-------------YSEMSDEDVKEIKQKTDGNSFLINLIDSPG- 105
Query: 505 WDIHVRKFSKKAAHASAQRSFVEFVLEPVYKLVAQVVGDVDSSLPAVLDQLGIHMNKEES 564
HV S+ A + VV D + + + E
Sbjct: 106 ---HVDFSSEVTAALRVTDGAL-------------VVVDTIEGVCVQTETVLRQALGERI 149
Query: 565 KINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFP 624
K +V +V+R V E + Q +T ++I + + +P
Sbjct: 150 K-------PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYP 202
Query: 625 RNQN------------NLDGWNKEMADKV-----ELLYVLFFDCPEDVCVRRCLKRGAEG 667
+ + A K +++ L+ D + ++ + +
Sbjct: 203 ARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDA 262
Query: 668 SGRA---------------------DDNEESLKKRISVYNTETMPIIKFFEAKNLVKR-- 704
G+ + ++ + + K E K L+K
Sbjct: 263 EGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVM 322
Query: 705 ---FNAEKSLVEMCVKHIP 720
A +L+EM V H+P
Sbjct: 323 RKFLPAADALLEMIVLHLP 341
Score = 62.4 bits (151), Expect = 1e-10
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 218 NKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKMAITLCVNKI 277
N PGHV+FS EVTAA+R+ DG ++ VD EGV + TE +L+ A+ E++ + +NK+
Sbjct: 99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 158
Query: 278 DRLMLELKLPPQDAYYKIKHIIDEIN 303
DR +LEL++ +D Y ++ +N
Sbjct: 159 DRALLELQVSKEDLYQTFARTVESVN 184
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 66.8 bits (162), Expect = 2e-12
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 399 LIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPV 458
+IR VALVGH GKTT+ + L+ +T R+ E+ TD + +++
Sbjct: 1 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVA 60
Query: 459 TLLLPDVKGKNYLMNIFDTPA 479
+ + + + + D P
Sbjct: 61 P-----LLFRGHRVFLLDAPG 76
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 65.9 bits (160), Expect = 5e-12
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKASPVT 459
+RN+ + H+ GKTT + ++ T ++ + D + E+ERG++I A+ T
Sbjct: 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 65
Query: 460 LLLPDVKGKNYLMNIFDTPA 479
K++ +NI D P
Sbjct: 66 -----CFWKDHRINIIDAPG 80
Score = 64.3 bits (156), Expect = 1e-11
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 189 IREGNLNSSPSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDA 248
G ++ C K H I+ PGHV+F+ EV +MR+ DG ++ D+
Sbjct: 53 RERGITITAAVTTCFWKDHRINIIDA--------PGHVDFTIEVERSMRVLDGAIVVFDS 104
Query: 249 AEGVMLNTERLLKHAVQEKMAITLCVNKIDRLMLELKLPPQDAYYKIKH 297
++GV +E + + A + K+ NK+D+ +L L + ++
Sbjct: 105 SQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGA 153
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 63.1 bits (152), Expect = 1e-11
Identities = 56/99 (56%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 615 SNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDN 674
NKFLIDGFPRNQ+NL GWNK M K ++ +VLFFDC ++C+ RCL+RG + SGR+DDN
Sbjct: 84 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERG-KSSGRSDDN 142
Query: 675 EESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
ESL+KRI Y T PII +E VK+ +A KS+ E
Sbjct: 143 RESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDE 181
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 59.0 bits (143), Expect = 1e-11
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 906 VIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVLGTGELYLDCVMHDLR 964
VI +A+EP ++ K+ L ++ + P + E+G ++ G GEL L+ ++ L+
Sbjct: 5 VIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLK 64
Query: 965 KMYSEIDIKV 974
+ + +D V
Sbjct: 65 REFK-VDANV 73
Score = 38.6 bits (90), Expect = 2e-04
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1 MLDGLRKVNKSYPLLTTKVE-ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKV 53
+ L ++ + P + E+G ++ G GEL L+ ++ L++ + +D V
Sbjct: 21 LSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFK-VDANV 73
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 59.6 bits (144), Expect = 2e-10
Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLKHAVQEKM-AITLCVNKIDRLM 281
PGH ++ + DG +L V AA+G M T + A Q + I + +NK+D
Sbjct: 75 PGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD--- 131
Query: 282 LELKLPPQDAYYKIKHIIDEINGLLRYLLIDDDREDGDEEMGDSQAVVLHEDKRYYPTAV 341
+ + ++ + ++ + + G + Q + +R V
Sbjct: 132 ---MVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWV 188
Query: 342 EVFGPDVETVV 352
+ ++ +
Sbjct: 189 DKIWELLDAID 199
Score = 56.5 bits (136), Expect = 2e-09
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
PH+ NV +GH+ HGKTT+ L E K+ D E+ RG++I +
Sbjct: 2 PHV--NVGTIGHVDHGKTTLTAALTYVAA-AENPNVEVKDYGDIDKAPEERARGITINTA 58
Query: 457 PVTLLLPDVKGKNYLMNIFDTP 478
V + + D P
Sbjct: 59 HVE-----YETAKRHYSHVDCP 75
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 58.8 bits (141), Expect = 3e-10
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 612 DITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRA 671
FL+DGFPRN+ N + W + M D V+ +VLFFDCPE+V +R LKRG SGR+
Sbjct: 80 ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGES-SGRS 138
Query: 672 DDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
DDN ES+KKR + +N +T +I + + VK A + + E
Sbjct: 139 DDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNE 180
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 53.4 bits (128), Expect = 2e-09
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 906 VIKIAVEPVNPSELPKMLDGLRKVNKSYPLLTTKVE-ESGEHVVLGTGELYLDCVMHDLR 964
+ +A+ P ++ ++ + LRK+ + P L + + E+GE ++ G GEL+L L+
Sbjct: 5 NVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ 64
Query: 965 KMYSEIDIKVADPVV 979
++++ + P V
Sbjct: 65 DY--GVEVEFSVPKV 77
Score = 34.1 bits (78), Expect = 0.010
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1 MLDGLRKVNKSYPLLTTKVE-ESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVV 58
+ + LRK+ + P L + + E+GE ++ G GEL+L L+ ++++ + P V
Sbjct: 21 LGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDY--GVEVEFSVPKV 77
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 54.9 bits (131), Expect = 5e-09
Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 3/145 (2%)
Query: 566 INIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPR 625
+ +LR + + G + + N FL+DGFPR
Sbjct: 32 LATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPR 91
Query: 626 NQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVY 685
+ + M + L + ++R +DDN+++LK R+ Y
Sbjct: 92 TVRQAEMLDDLMEKRK---EKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAY 148
Query: 686 NTETMPIIKFFEAKNLVKRFNAEKS 710
+T+T P+++++ + + +A ++
Sbjct: 149 HTQTTPLVEYYSKRGIHSAIDASQT 173
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 54.6 bits (130), Expect = 1e-08
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 608 ITNEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEG 667
+ + TS FLIDG+PR + + +++ +L+ D + +R LKRG E
Sbjct: 80 MVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPT---LLLYVDAGPETMTKRLLKRG-ET 135
Query: 668 SGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714
SGR DDNEE++KKR+ Y T P+I F+E + +V++ NAE S+ ++
Sbjct: 136 SGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDV 182
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 54.1 bits (129), Expect = 2e-08
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE-------------KNLRYTDTL 443
PHL N+ ++GH+ HGK+T++ L+ + +E K D L
Sbjct: 2 PHL--NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 59
Query: 444 FTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478
E+ERGV+I + + + K Y I D P
Sbjct: 60 KEERERGVTINLTFMR-----FETKKYFFTIIDAP 89
Score = 39.8 bits (92), Expect = 0.001
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 199 SIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNT-- 256
+I + + PGH +F + D +L V A +G
Sbjct: 68 TINLTFMRFETKKYFF---TIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 124
Query: 257 ------ERLLKHAVQEKMAITLCVNKIDR 279
E ++ + + VNK+D
Sbjct: 125 VEGQTREHIILAKTMGLDQLIVAVNKMDL 153
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 51.1 bits (121), Expect = 2e-07
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 610 NEDITSNKFLIDGFPRNQNNLDGWNKEMADKVELL-------YVLFFDCPEDVCVRRCLK 662
+ + +++ +DG+ ++M + ++LFFDCPED+ + R L+
Sbjct: 74 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLE 133
Query: 663 RGAEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
RG + SGR+DDN ES+KKR + + +MP+I++FE K+ V R ++S+ +
Sbjct: 134 RG-KTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVED 183
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 49.3 bits (117), Expect = 6e-07
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
PH+ NV +GH+ HGKTT+ + + A+ K D E+ RG++I A+
Sbjct: 2 PHV--NVGTIGHVDHGKTTLTAAITKIL--AEGGGAKFKKYEEIDNAPEERARGITINAA 57
Query: 457 PVTLLLPDVKGKNYLMNIFDTP 478
V D P
Sbjct: 58 HVE-----YSTAARHYAHTDCP 74
Score = 48.5 bits (115), Expect = 1e-06
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 199 SIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTER 258
+I ++ +S R+ PGH ++ + DG +L V A +G M T
Sbjct: 53 TINAAHVEYST---AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE 109
Query: 259 LLKHAVQ-EKMAITLCVNKID 278
L A Q + + VNK D
Sbjct: 110 HLLLARQIGVEHVVVYVNKAD 130
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 48.4 bits (114), Expect = 8e-07
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 606 DLITNEDITSNKFLIDGFPRNQNNLDGWNKEMADK-VELLYVLFFDCPEDVCVRRCLKRG 664
D +TN N F++DGFPR + ++ + ++ L + +++ V R
Sbjct: 72 DELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI---- 127
Query: 665 AEGSGRADDNEESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKS 710
N ++LKKR++ Y+ +T PI+ F++ + +A +
Sbjct: 128 --------TNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQP 165
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 48.3 bits (114), Expect = 8e-07
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 615 SNKFLIDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDN 674
N FL+DGFPR + ++ +AD + V + R ADDN
Sbjct: 78 DNGFLLDGFPRTVPQAEALDQLLADMG---RKIEHVLNIQVEKEELIARL-----TADDN 129
Query: 675 EESLKKRISVYNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
+++ R+ V +T P++ F+++K ++ N +K + +
Sbjct: 130 PDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKD 168
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 48.3 bits (114), Expect = 1e-06
Identities = 13/78 (16%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 633 WNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISVYNTETMPI 692
+ + ++ V+ + P +V +R D E++ KR+ Y +T P+
Sbjct: 97 QAEALDRAYQIDTVINLNVPFEVIKQRL-----------TDRPETVVKRLKAYEAQTEPV 145
Query: 693 IKFFEAKNLVKRFNAEKS 710
++++ K +++ F+ ++
Sbjct: 146 LEYYRKKGVLETFSGTET 163
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 48.4 bits (114), Expect = 1e-06
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 18/112 (16%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
P + N+ +VGH+ HGKTT++ + + E K + E GV
Sbjct: 7 PEV--NIGVVGHVDHGKTTLVQAITGIW--TSKHSEELKRGMTIKLGYAETNIGVCESCK 62
Query: 457 PVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDIH 508
+ T S + D ++ D PG +
Sbjct: 63 K--------------PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLM 100
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 46.5 bits (110), Expect = 8e-06
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 223 PGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLN-------TERLLKHAVQEKM-AITLCV 274
PGH +F + D +L + G T A + + + V
Sbjct: 92 PGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAV 151
Query: 275 NKIDRLMLELKLPPQDAYYKIKHIIDEI 302
NK+D + + + +I
Sbjct: 152 NKMDSVK-----WDESRFQEIVKETSNF 174
Score = 44.2 bits (104), Expect = 4e-05
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQT-------------HPGYRQPAEEKNLRYTDTL 443
H+ NV ++GH+ GK+T LI + K D L
Sbjct: 5 SHI--NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKL 62
Query: 444 FTEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478
E+ERG++I + + Y + + D P
Sbjct: 63 KAERERGITIDIALW-----KFETPKYQVTVIDAP 92
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 44.1 bits (103), Expect = 5e-05
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 388 EFLADMMDTPHLIRNVALVGHLHHGKTTMIDCLIRQT 424
E L DM H+ N+ +GH+ GK+T+ ++ T
Sbjct: 14 ELLKDMYGKEHV--NIVFIGHVDAGKSTLGGNILFLT 48
Score = 33.3 bits (75), Expect = 0.13
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 2/118 (1%)
Query: 202 CSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLLK 261
++ R + PGH + + D VL + A G
Sbjct: 89 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 148
Query: 262 HAVQE-KMAITLCVNKIDRLMLELKLPPQD-AYYKIKHIIDEINGLLRYLLIDDDRED 317
+ +A T +N + ++ ++ P + + K +D+++ LR + + + D
Sbjct: 149 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTD 206
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 43.0 bits (100), Expect = 6e-05
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 566 INIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFPR 625
I+ + R K + G P T I ++D N FL+DGFPR
Sbjct: 29 ISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPR 88
Query: 626 NQNNLDGWNKEMAD-KVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISV 684
+ +AD +L YV+ D +DV + R ADDNE ++ R+ V
Sbjct: 89 TVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERL---------TADDNEATVANRLEV 139
Query: 685 YNTETMPIIKFFEAKNLVKRFNAEKSLVE 713
+ P++ F+E K ++ N E+ + +
Sbjct: 140 NMKQMKPLVDFYEQKGYLRNINGEQDMEK 168
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 42.4 bits (98), Expect = 9e-05
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 394 MDTPHLIRNVALVGHLHHGKTTMIDCLIRQT 424
MD ++ N+ + GH+ HGKTT+ L
Sbjct: 1 MDFKNI--NLGIFGHIDHGKTTLSKVLTEIA 29
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 42.9 bits (100), Expect = 1e-04
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 20/94 (21%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEE---------------KNLRYTDTLF 444
+ G++ GK+T+I L+ + Y E D L
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 445 TEQERGVSIKASPVTLLLPDVKGKNYLMNIFDTP 478
E+E+G++I + I DTP
Sbjct: 69 AEREQGITIDVAYRY-----FSTAKRKFIIADTP 97
Score = 32.1 bits (72), Expect = 0.34
Identities = 15/84 (17%), Positives = 26/84 (30%)
Query: 198 PSIYCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTE 257
+ ++ + R PGH ++ + CD ++ VDA GV T
Sbjct: 72 EQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR 131
Query: 258 RLLKHAVQEKMAITLCVNKIDRLM 281
R A + + L
Sbjct: 132 RHSYIASLLGIKHIVVAINKMDLN 155
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 41.2 bits (95), Expect = 4e-04
Identities = 24/140 (17%), Positives = 40/140 (28%), Gaps = 11/140 (7%)
Query: 201 YCSNKSHSWEIVCTRNNNKCLPPGHVNFSDEVTAAMRLCDGVVLFVDAAEGVMLNTERLL 260
PGH F+ L D +L VD EG T+ L
Sbjct: 56 CGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115
Query: 261 KHAVQEKMAITLCVNKIDRLMLELKLPPQDAYY-----------KIKHIIDEINGLLRYL 309
+ + NKIDR+ + K+ + E+ G L
Sbjct: 116 NILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEE 175
Query: 310 LIDDDREDGDEEMGDSQAVV 329
+ +R D + +++
Sbjct: 176 GFESERFDRVTDFASQVSII 195
Score = 40.4 bits (93), Expect = 7e-04
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 400 IRN--VALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSI 453
IR+ V+++GH+ HGKTT++D + +++ T+ E
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGD 58
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 40.2 bits (93), Expect = 6e-04
Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 566 INIRPLLRLVYKVEVNRVPAGNWVLIEGI-DQPIVKTSTITDLITNEDITSNKFLIDGFP 624
I+ LLR + +G + + + + + D N +L+DG+P
Sbjct: 32 ISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYP 91
Query: 625 RNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISV 684
R+ + + + D P+++ V R DD EE +K R+
Sbjct: 92 RSYSQAMALETLE---IRPDTFILLDVPDELLVERV---------VFDDTEEKVKLRLET 139
Query: 685 YNTETMPIIKFFEAKNLVKRFNAEKSLVEM 714
Y ++ + +N++ + + ++ +
Sbjct: 140 YYQNIESLLSTY--ENIIVKVQGDATVDAV 167
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 39.6 bits (91), Expect = 0.001
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 23/111 (20%)
Query: 397 PHLIRNVALVGHLHHGKTTMIDCLIRQTHPGYRQPAEEKNLRYTDTLFTEQERGVSIKAS 456
+ N+ +VGH+ HGKTT+ L TDT E RG++IK
Sbjct: 4 AEV--NIGMVGHVDHGKTTLTKALTGVW---------------TDTHSEELRRGITIKIG 46
Query: 457 PVTLLLPDVKGKNYLMNIFDTPASPVTLLLPDVKGKNYLMNIFDTPGMWDI 507
+ N SPV ++ D PG +
Sbjct: 47 FADAEIRR------CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEAL 91
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.9 bits (76), Expect = 0.062
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQT 424
VA+VG + GK+T+ + ++ +
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKE 32
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.0 bits (71), Expect = 0.23
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 620 IDGFPRNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLK 679
I N W + + FD P V+R KR G + L+
Sbjct: 83 ISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR-----GTKAVPIDVLR 137
Query: 680 KRISVY 685
Sbjct: 138 SMYKSM 143
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 32.3 bits (72), Expect = 0.28
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTHPGYR 429
V VG GKTT+ R Y+
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYK 29
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.5 bits (70), Expect = 0.40
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 401 RNVALVGHLHHGKTTMIDCLIRQTHPGY 428
R V VG GKT + L+ +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT 28
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.4 bits (73), Expect = 0.41
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 354 EEDTQALSVPLIAPIKKKKFQLKEQDLPDTVYNMEFLADMMDTPHLIRNVALVGHLHHGK 413
+ +S ++ I+ +++ ++ T + +D+ L NVA+ G GK
Sbjct: 15 NTGRKIISQEILNLIEL---RMRAGNIQLTNSAISDALKEIDSSVL--NVAVTGETGSGK 69
Query: 414 TTMIDCLIRQTH 425
++ I+ L +
Sbjct: 70 SSFINTLRGIGN 81
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 31.1 bits (69), Expect = 0.50
Identities = 17/155 (10%), Positives = 42/155 (27%), Gaps = 16/155 (10%)
Query: 565 KINIRPLLRLVYKVEVNRVPAGNWVLIEGIDQPIVKTSTITDLITNEDITSNKFLIDGFP 624
+++ L + V+ N ++ + D + ++ ++D
Sbjct: 28 ELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHS 87
Query: 625 RNQNNLDGWNKEMADKVELLYVLFFDCPEDVCVRRCLKRGAEGSGRADDNEESLKKRISV 684
++ V+ +V R KR + +N E +
Sbjct: 88 SELFPERWFH----------MVVVLHTSTEVLFERLTKRQYS-EAKRAENME-----AEI 131
Query: 685 YNTETMPIIKFFEAKNLVKRFNAEKSLVEMCVKHI 719
+E ++ R N + V+ I
Sbjct: 132 QCICEEEARDAYEDDIVLVRENDTLEQMAATVEEI 166
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.9 bits (68), Expect = 0.61
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 403 VALVGHLHHGKTTMIDCLIRQ 423
VA+VG + GK+T+++ L+
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.5 bits (67), Expect = 0.76
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 403 VALVGHLHHGKTTMIDCLIRQ 423
V +VG + GK+T+ + L+++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 242
Score = 30.7 bits (69), Expect = 0.82
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 1179 DAPVPGSPLYTIKAFIPAIDSF-GFETDLRTHTQGQ---AFCLSVFH----HWQIVPGDP 1230
D G Y+ AF+ A SF GF T T+T+ + AF H P P
Sbjct: 20 DPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFLAQTSHETTGGAAGSPDGP 79
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.6 bits (65), Expect = 2.1
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 403 VALVGHLHHGKTTMIDCLIRQ 423
+ + G + GKT+++ L
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTD 26
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.3 bits (64), Expect = 2.1
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 403 VALVGHLHHGKTTMIDCLIRQ 423
+A+VG + GK+T+++ L+ Q
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 27.4 bits (61), Expect = 3.0
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 86 IAEPLEKGLAEDIENQIVHIAWN-KKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILV 144
+AE LE E +E+ AW + YD AF V+ P+IL
Sbjct: 26 VAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYD----------AFKHAVSDPSILD 75
Query: 145 DDTLPSEVDKGLLGSVK 161
L + + L+ ++
Sbjct: 76 SLDLNEDEREVLINNIN 92
Score = 27.4 bits (61), Expect = 3.0
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 1007 IAEPLEKGLAEDIENQIVHIAWN-KKRLGEFFQSKYDWDLLAARSIWAFGPEVTGPNILV 1065
+AE LE E +E+ AW + YD AF V+ P+IL
Sbjct: 26 VAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYD----------AFKHAVSDPSILD 75
Query: 1066 DDTLPSEVDKGLLGSVK 1082
L + + L+ ++
Sbjct: 76 SLDLNEDEREVLINNIN 92
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 28.4 bits (62), Expect = 3.8
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQ 423
+ +VG + GK+T+++ L+ +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNE 23
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.5 bits (62), Expect = 4.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 400 IRNVALVGHLHHGKTTMIDCLIRQ 423
I +V LVG+ + GK++++ + R
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRA 24
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.2 bits (61), Expect = 4.4
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 402 NVALVGHLHHGKTTMIDCLIRQ 423
V + G + GK+++++ L +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGR 24
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 27.9 bits (62), Expect = 4.5
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 1130 TARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSP 1186
TA + YSA R + L A + V + G T PV P
Sbjct: 36 TAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGG-STYQVPVEVRP 91
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 4.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 391 ADMMDTPHLIR-NVALVGHLHHGKTTMIDCLIRQTHP 426
D+ P VA G + GK++ ++ L Q
Sbjct: 6 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL 42
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 5.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 403 VALVGHLHHGKTTMIDCLIRQTHPGYRQP 431
+ LVG + GKTT ++ + P
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIP 33
>d2p3ya1 e.65.1.1 (A:22-482) Hypothetical protein VPA0735 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 461
Score = 28.5 bits (63), Expect = 7.0
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 470 YLMNIFD-TPASPVTLLLPDVKGKNYLMNIFDTPGMWDIHVR 510
Y++ ++ P+ + LP+ K ++++ D+ +
Sbjct: 88 YVIGTWNLEKTGPLIINLPEAKMAGMMLDVHQRVL-SDLSLL 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,831,708
Number of extensions: 238496
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 79
Length of query: 1291
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1195
Effective length of database: 1,089,516
Effective search space: 1301971620
Effective search space used: 1301971620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.2 bits)