BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15089
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|A Chain A, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|A Chain A, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|N Chain N, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|A Chain A, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|N Chain N, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|A Chain A, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|A Chain A, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|N Chain N, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 621
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/617 (76%), Positives = 537/617 (87%)
Query: 45 SDAISREYPVVDHQFDXXXXXXXXXXXXXXXXXXXEGFKTAVITKLFPTRSHTVAAQGGI 104
SD+IS +YPVVDH+FD GF TA +TKLFPTRSHTVAAQGGI
Sbjct: 5 SDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGI 64
Query: 105 NAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGK 164
NAALGNME+D+W WH YDTVKGSDWLGDQDAIHYMT +AP AVIELENYGMPFSRT +GK
Sbjct: 65 NAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGK 124
Query: 165 IYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE 224
IYQRAFGGQSL++GKGGQAHRCC VADRTGHSLLHTLYG+SLRYD +YFVEYFALDL++E
Sbjct: 125 IYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME 184
Query: 225 NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPN 284
NGEC+GVIALC+EDG+IHRF A NTV+ATGGYGR YFSCTSAHT TGDGTAM++RAGLP
Sbjct: 185 NGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPC 244
Query: 285 EDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM 344
+DLEFVQFHPTGIYGAGCLITEGCRGEGG LINS+GERFMERYAPVAKDLASRDVVSRSM
Sbjct: 245 QDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSM 304
Query: 345 TIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVH 404
TIEIREGRG GP+KDHVYLQLHHLPP+ L RLPGISETAMIFAGVDVT+EPIPVLPTVH
Sbjct: 305 TIEIREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVH 364
Query: 405 YNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRAC 464
YNMGGIPTNYKGQV+THVNG+DK++ GLYA GEA+ +SVHGANRLGANSLLDLVVFGRAC
Sbjct: 365 YNMGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRAC 424
Query: 465 AKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFR 524
A TIAE KPG P+ NAGE SVANLD +R A G I T++ RL MQKTMQ++AAVFR
Sbjct: 425 ALTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFR 484
Query: 525 TQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKE 584
T LQEGC K++ +Y+DLAHLK FDR ++WNTDLVETLELQNLM+ A+QT++ AE RKE
Sbjct: 485 TGSILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKE 544
Query: 585 SRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDK 644
SRGAHARED+K+R+DE DY+KPL+GQ +P EEHWRKHTL+ VDV +GKV + YRPVID+
Sbjct: 545 SRGAHAREDYKLRIDEFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDR 604
Query: 645 TLDAKECATIAPAIRSY 661
TL+ ++C+++ PAIRSY
Sbjct: 605 TLNEEDCSSVPPAIRSY 621
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/617 (77%), Positives = 530/617 (85%)
Query: 45 SDAISREYPVVDHQFDXXXXXXXXXXXXXXXXXXXEGFKTAVITKLFPTRSHTVAAQGGI 104
SDAIS +YPVVDH+FD GF TA +TKLFPTRSHTVAAQGGI
Sbjct: 6 SDAISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGI 65
Query: 105 NAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGK 164
NAALGNMEED+W WH YDTVKGSDWLGDQDAIHYMT +AP +V+ELENYGMPFSRT DGK
Sbjct: 66 NAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGK 125
Query: 165 IYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE 224
IYQRAFGGQSLK+GKGGQAHRCC VADRTGHSLLHTLYG+SLRYD +YFVEYFALDL++E
Sbjct: 126 IYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME 185
Query: 225 NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPN 284
NGEC+GVIALC+EDGSIHR A NTV+ATGGYGR YFSCTSAHT TGDGTAM++RAGLP
Sbjct: 186 NGECRGVIALCIEDGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPC 245
Query: 285 EDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM 344
+DLEFVQFHPTGIYGAGCLITEGCRGEGG LINS+GERFMERYAPVAKDLASRDVVSRSM
Sbjct: 246 QDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSM 305
Query: 345 TIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVH 404
T+EIREGRG GP+KDHVYLQLHHLPPE L RLPGISETAMIFAGVDVT+EPIPVLPTVH
Sbjct: 306 TLEIREGRGCGPEKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVH 365
Query: 405 YNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRAC 464
YNMGGIPTNYKGQVL HVNGQD+++ GLYA GEA+C+SVHGANRLGANSLLDLVVFGRAC
Sbjct: 366 YNMGGIPTNYKGQVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRAC 425
Query: 465 AKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFR 524
A +IAE +PG + NAGE SV NLD +R A G I T++LRL+MQK+MQ++AAVFR
Sbjct: 426 ALSIAESCRPGDKVPSIKPNAGEESVMNLDKLRFANGTIRTSELRLSMQKSMQSHAAVFR 485
Query: 525 TQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKE 584
LQEGC K+ LY DL HLK FDR ++WNTDLVETLELQNLM+ A+QT++ AE RKE
Sbjct: 486 VGSVLQEGCEKILRLYGDLQHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKE 545
Query: 585 SRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDK 644
SRGAHAREDFK RVDE DY+KP++GQ KP +EHWRKHTL+ VDV TGKV + YRPVIDK
Sbjct: 546 SRGAHAREDFKERVDEYDYSKPIQGQQKKPFQEHWRKHTLSYVDVKTGKVSLEYRPVIDK 605
Query: 645 TLDAKECATIAPAIRSY 661
TL+ +CAT+ PAIRSY
Sbjct: 606 TLNEADCATVPPAIRSY 622
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/612 (69%), Positives = 484/612 (79%), Gaps = 1/612 (0%)
Query: 51 EYPVVDHQFDXXXXXXXXXXXXXXXXXXXEGFKTAVITKLFPTRSHTVAAQGGINAALGN 110
+Y V+DH +D GFKTAV+TK+FPTRSHT AAQGGINAALG+
Sbjct: 34 QYKVIDHAYDVVIIGAGGAGLRAAMGLGEAGFKTAVVTKMFPTRSHTTAAQGGINAALGS 93
Query: 111 MEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAF 170
M DDW WH YDT KGSDWLGDQ+A+HY+TR A +AV ELEN+GMPFSRT +GKIYQR+F
Sbjct: 94 MNPDDWKWHFYDTAKGSDWLGDQNAMHYLTRNAVEAVTELENFGMPFSRTPEGKIYQRSF 153
Query: 171 GGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKG 230
GGQS YGKGG A R C VADRTGHS+LHTLYG SLR C +F+EYFALDL+++ G C G
Sbjct: 154 GGQSNNYGKGGVAKRTCCVADRTGHSMLHTLYGNSLRCHCTFFIEYFALDLLMDKGRCVG 213
Query: 231 VIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290
VIALCLEDG+IHRF + T++ATGGYGRAYFSCT+AH TGDGTA+ +RAG+ EDLEF+
Sbjct: 214 VIALCLEDGTIHRFRSKRTIVATGGYGRAYFSCTTAHMNTGDGTALATRAGIALEDLEFI 273
Query: 291 QFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIRE 350
QFHPTGIYG GCLITEG RGEGG+L+NSEGERFMERYAP AKDLASRDVVSR+ TIEI E
Sbjct: 274 QFHPTGIYGVGCLITEGSRGEGGFLVNSEGERFMERYAPKAKDLASRDVVSRAETIEIME 333
Query: 351 GRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGI 410
GRGVGP+KDH+YLQLHHLP E LHQRLPGISETA IFAGVDVT+EPIPV+PTVHYNMGGI
Sbjct: 334 GRGVGPEKDHIYLQLHHLPAEQLHQRLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGI 393
Query: 411 PTNYKGQVLTHVN-GQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIA 469
PTNYK QV+ + G DKI+ GLYA GE +C SVHGANRLGANSLLD VVFGRAC+ I
Sbjct: 394 PTNYKAQVIKYTKEGGDKIVPGLYACGECACHSVHGANRLGANSLLDAVVFGRACSINIK 453
Query: 470 EENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETL 529
EE KP I AGE S+ANLD VR+A GD+ TA+LRLTMQKTMQ +A VFR + L
Sbjct: 454 EELKPDEKIPELPEGAGEESIANLDAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDIL 513
Query: 530 QEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAH 589
EG KM L K+L LK DRSLIWN+DL E+LELQNLM+NA QT+ AAENRKESRGAH
Sbjct: 514 AEGVKKMMDLSKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKESRGAH 573
Query: 590 AREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAK 649
AR+DF R DE DY+KP+EGQ +P E+HWRKHTLT D TG + + YRPVIDKTLD
Sbjct: 574 ARDDFPKREDEYDYSKPIEGQTKRPFEKHWRKHTLTKQDPRTGHITLDYRPVIDKTLDPA 633
Query: 650 ECATIAPAIRSY 661
E I P IRSY
Sbjct: 634 EVDWIPPIIRSY 645
>pdb|1NEK|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 588
Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/527 (54%), Positives = 356/527 (67%), Gaps = 12/527 (2%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMT 140
G A+++K+FPTRSHTV+AQGGI ALGN ED+W WHMYDTVKGSD++GDQDAI YM
Sbjct: 30 GQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMC 89
Query: 141 REAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHT 200
+ P+A++ELE+ G+PFSR DG+IYQR FGGQS +G G QA R A ADRTGH+LLHT
Sbjct: 90 KTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHT 148
Query: 201 LYGQSLRYDCNYFVEYFALDLII-ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259
LY Q+L+ F E++ALDL+ ++G G ALC+E G + F A TVLATGG GR
Sbjct: 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI 208
Query: 260 YFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSE 319
Y S T+AH TGDG M RAG+P +D+E QFHPTGI GAG L+TEGCRGEGGYL+N
Sbjct: 209 YQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKH 268
Query: 320 GERFMERYAPVAKDLASRDVVSRSMTIEIREGRGV-GPDKDHVYLQLHHLPPEDLHQRLP 378
GERFMERYAP AKDLA RDVV+RS+ IEIREGRG GP H L+L HL E L RLP
Sbjct: 269 GERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLP 328
Query: 379 GISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLT-HVNGQDKIIHGLYAAGE 437
GI E + FA VD +EPIPV+PT HY MGGIPT GQ LT + G+D ++ GL+A GE
Sbjct: 329 GILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGE 388
Query: 438 ASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSV-ANLDWV 496
+C SVHGANRLG NSLLDLVVFGRA + E ++ +A ES V A+LD +
Sbjct: 389 IACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALR----DASESDVEASLDRL 444
Query: 497 RHAKGDITTAD---LRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSL 553
+ D +R +Q+ MQ +VFR + + +G ++ + + L + ++ D S
Sbjct: 445 NRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSS 504
Query: 554 IWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDE 600
+NT VE LEL NLM A T +A R ESRGAH+R DF R DE
Sbjct: 505 EFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDE 551
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/593 (37%), Positives = 324/593 (54%), Gaps = 57/593 (9%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
K A+I+K++P RSHTVAAQGG +AA+ + D + +H +DTV G DWL +QD + Y
Sbjct: 32 KIALISKVYPMRSHTVAAQGG-SAAVAQ-DHDSFEYHFHDTVAGGDWLCEQDVVDYFVHH 89
Query: 143 APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLY 202
P + +LE +G P+SR DG + R FGG ++ R AD+TG +LHTL+
Sbjct: 90 CPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLF 141
Query: 203 GQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYF 261
SL++ F E+F LD+++++G +G++A+ + +G++ + AN V+ATGG GR Y
Sbjct: 142 QTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYR 201
Query: 262 SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGE 321
T+ TGDG M G+P D+EFVQ+HPTG+ G+G L+TEGCRGEGG L+N G
Sbjct: 202 YNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGY 261
Query: 322 RFMERYA-----PVAK------DLASRDVVSRSMTIEIREGRGVG-PDKDHVYLQLHHLP 369
R+++ Y P+ + +L RD VS++ E R+G + P D VYL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429
+ LH+RLP I E A + GVD +EPIPV PT HY MGGI T+ + I
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETR---------I 372
Query: 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS 489
GL+A GE S +HGANRLG+NSL +LVVFGR + E A A +
Sbjct: 373 KGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAG 432
Query: 490 VAN-LDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKV 548
V L + + G A +R M M+ ++RT E +Q+ +K+A L + +++
Sbjct: 433 VEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRI 492
Query: 549 FDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLE 608
D S ++NTDL+ T+EL + + A +A RKESRGAH R D E
Sbjct: 493 TDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD--------------E 538
Query: 609 GQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
G + + ++ KHTL D + G ++ Y V + T+ PA R Y
Sbjct: 539 GCTERD-DVNFLKHTLAFRDAD-GTTRLEYSDV--------KITTLPPAKRVY 581
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 360 bits (923), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 223/593 (37%), Positives = 324/593 (54%), Gaps = 57/593 (9%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
K A+I+K++P RSHTVAA+GG +AA+ + D + +H +DTV G DWL +QD + Y
Sbjct: 32 KIALISKVYPMRSHTVAAEGG-SAAVAQ-DHDSFEYHFHDTVAGGDWLCEQDVVDYFVHH 89
Query: 143 APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLY 202
P + +LE +G P+SR DG + R FGG ++ R AD+TG +LHTL+
Sbjct: 90 CPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLF 141
Query: 203 GQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYF 261
SL++ F E+F LD+++++G +G++A+ + +G++ + AN V+ATGG GR Y
Sbjct: 142 QTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYR 201
Query: 262 SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGE 321
T+ TGDG M G+P D+EFVQ+HPTG+ G+G L+TEGCRGEGG L+N G
Sbjct: 202 YNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGY 261
Query: 322 RFMERYA-----PVAK------DLASRDVVSRSMTIEIREGRGVG-PDKDHVYLQLHHLP 369
R+++ Y P+ + +L RD VS++ E R+G + P D VYL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429
+ LH+RLP I E A + GVD +EPIPV PT HY MGGI T+ + I
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETR---------I 372
Query: 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS 489
GL+A GE S +HGANRLG+NSL +LVVFGR + E A A +
Sbjct: 373 KGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAG 432
Query: 490 VAN-LDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKV 548
V L + + G A +R M M+ ++RT E +Q+ +K+A L + +++
Sbjct: 433 VEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRI 492
Query: 549 FDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLE 608
D S ++NTDL+ T+EL + + A +A RKESRGAH R D E
Sbjct: 493 TDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD--------------E 538
Query: 609 GQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
G + + ++ KHTL D + G ++ Y V + T+ PA R Y
Sbjct: 539 GCTERD-DVNFLKHTLAFRDAD-GTTRLEYSDV--------KITTLPPAKRVY 581
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 208/525 (39%), Positives = 300/525 (57%), Gaps = 33/525 (6%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
K A+I+K++P RSHTVAA+GG +AA+ + D + +H +DTV G DWL +QD + Y
Sbjct: 32 KIALISKVYPMRSHTVAAEGG-SAAVAQ-DHDSFEYHFHDTVAGGDWLCEQDVVDYFVHH 89
Query: 143 APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLY 202
P + +LE +G P+SR DG + R FGG ++ R AD+TG +LHTL+
Sbjct: 90 CPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLF 141
Query: 203 GQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYF 261
SL++ F E+F LD+++++G +G++A+ + +G++ + AN V+ATGG GR Y
Sbjct: 142 QTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYR 201
Query: 262 SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGE 321
T+ TGDG M G+P D+EFVQ+HPTG+ G+G L+TEGCRGEGG L+N G
Sbjct: 202 YNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGY 261
Query: 322 RFMERYA-----PVAK------DLASRDVVSRSMTIEIREGRGVG-PDKDHVYLQLHHLP 369
R+++ Y P+ + +L RD VS++ E R+G + P D VYL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429
+ LH+RLP I E A + GVD +EPIPV PT HY MGGI T+ + I
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETR---------I 372
Query: 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS 489
GL+A GE S +HGANRLG+NSL +LVVFGR + E A A +
Sbjct: 373 KGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAG 432
Query: 490 VAN-LDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKV 548
V L + + G A +R M M+ ++RT E +Q+ +K+A L + +++
Sbjct: 433 VEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRI 492
Query: 549 FDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHARED 593
D S ++NTDL+ T+EL + + A +A RKESRGAH R D
Sbjct: 493 TDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 358 bits (918), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 222/593 (37%), Positives = 323/593 (54%), Gaps = 57/593 (9%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
K A+I+K++P RSHTVAA+GG +AA+ + D + +H +DTV G DWL +QD + Y
Sbjct: 32 KIALISKVYPMRSHTVAAEGG-SAAVAQ-DHDSFEYHFHDTVAGGDWLCEQDVVDYFVHH 89
Query: 143 APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLY 202
P + +LE +G P+SR DG + R FGG ++ R AD+TG +LHTL+
Sbjct: 90 CPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLF 141
Query: 203 GQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYF 261
SL++ F E+F LD+++++G +G++A+ + +G++ + AN V+ATGG GR Y
Sbjct: 142 QTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYR 201
Query: 262 SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGE 321
T+ TGDG M G+P D+EFVQ+HP G+ G+G L+TEGCRGEGG L+N G
Sbjct: 202 YNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPAGLPGSGILMTEGCRGEGGILVNKNGY 261
Query: 322 RFMERYA-----PVAK------DLASRDVVSRSMTIEIREGRGVG-PDKDHVYLQLHHLP 369
R+++ Y P+ + +L RD VS++ E R+G + P D VYL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429
+ LH+RLP I E A + GVD +EPIPV PT HY MGGI T+ + I
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETR---------I 372
Query: 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS 489
GL+A GE S +HGANRLG+NSL +LVVFGR + E A A +
Sbjct: 373 KGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAG 432
Query: 490 VAN-LDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKV 548
V L + + G A +R M M+ ++RT E +Q+ +K+A L + +++
Sbjct: 433 VEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRI 492
Query: 549 FDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLE 608
D S ++NTDL+ T+EL + + A +A RKESRGAH R D E
Sbjct: 493 TDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD--------------E 538
Query: 609 GQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
G + + ++ KHTL D + G ++ Y V + T+ PA R Y
Sbjct: 539 GCTERD-DVNFLKHTLAFRDAD-GTTRLEYSDV--------KITTLPPAKRVY 581
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/592 (33%), Positives = 300/592 (50%), Gaps = 55/592 (9%)
Query: 80 EGFKTAVITKLFPTRSHTVAAQGGINAALGNM---EEDDWHWHMYDTVKGSDWLGDQDAI 136
+G T V++ + RSH+ AAQGG+ A+LGN + D+ H DTVKGSDW DQ
Sbjct: 27 KGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKVA 86
Query: 137 HYMTREAPKAVIELENYGMPFSRTTDGK---------------------IYQRAFGGQSL 175
APKA+ EL +G+P++R G I+ R FGG
Sbjct: 87 RMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGT-- 144
Query: 176 KYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALC 235
+ R C AD TGH++L + + L+ + A+ LI ++G+C G +
Sbjct: 145 ------KKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRD 198
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPN-EDLEFVQFHP 294
L G I + A T++ATGGYGR Y + T+A C G GTA+ G+ ++E VQFHP
Sbjct: 199 LVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHP 258
Query: 295 TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGV 354
T ++ +G L+TEGCRG+GG L + +G RFM Y P K+LASRDVVSR M IR+G+GV
Sbjct: 259 TPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGV 318
Query: 355 -GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTN 413
P H++L + L + + L + E FAG+D + PVLP HY+MGGI T+
Sbjct: 319 QSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTD 378
Query: 414 YKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE-- 471
Y+G+ + GL++AGEA+C +HG NRLG NS+ + VV G + AE
Sbjct: 379 YRGEAK---------LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 429
Query: 472 ----NKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
+ ++ F + A + + +KG ++ M+ M +FR
Sbjct: 430 NTQVDLETKTLEKFV----KGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGP 485
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
L++ ++ LYK ++ + ++ L N +L E + ++ A+ A +R ESRG
Sbjct: 486 HLEKSVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRG 545
Query: 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYR 639
AH RED+ R D++++ P P E+ +DVN ++ YR
Sbjct: 546 AHNREDYPKR-DDINWLNRTLASWPNP-EQTLPTLEYEALDVNEMEIAPRYR 595
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/592 (33%), Positives = 300/592 (50%), Gaps = 55/592 (9%)
Query: 80 EGFKTAVITKLFPTRSHTVAAQGGINAALGNM---EEDDWHWHMYDTVKGSDWLGDQDAI 136
+G T V++ + RSH+ AAQGG+ A+LGN + D+ H DTVKGSDW DQ
Sbjct: 27 KGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKVA 86
Query: 137 HYMTREAPKAVIELENYGMPFSRTTDGK---------------------IYQRAFGGQSL 175
APKA+ EL +G+P++R G I+ R FGG
Sbjct: 87 RMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGT-- 144
Query: 176 KYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALC 235
+ R C AD TGH++L + + L+ + A+ LI ++G+C G +
Sbjct: 145 ------KKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRD 198
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPN-EDLEFVQFHP 294
L G I + A T++ATGGYGR Y + T+A C G GTA+ G+ ++E VQFHP
Sbjct: 199 LVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHP 258
Query: 295 TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGV 354
T ++ +G L+TEGCRG+GG L + +G RFM Y P K+LASRDVVSR M IR+G+GV
Sbjct: 259 TPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGV 318
Query: 355 -GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTN 413
P H++L + L + + L + E FAG+D + PVLP HY+MGGI T+
Sbjct: 319 QSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTD 378
Query: 414 YKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE-- 471
Y+G+ + GL++AGEA+C +HG NRLG NS+ + VV G + AE
Sbjct: 379 YRGEAK---------LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 429
Query: 472 ----NKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
+ ++ F + A + + +KG ++ M+ M +FR
Sbjct: 430 NTQVDLETKTLEKFV----KGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGP 485
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
L++ ++ LYK ++ + ++ L N +L E + ++ A+ A +R ESRG
Sbjct: 486 HLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRG 545
Query: 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYR 639
AH RED+ R D++++ P P E+ +DVN ++ YR
Sbjct: 546 AHNREDYPKR-DDINWLNRTLASWPNP-EQTLPTLEYEALDVNEMEIAPGYR 595
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/592 (33%), Positives = 300/592 (50%), Gaps = 55/592 (9%)
Query: 80 EGFKTAVITKLFPTRSHTVAAQGGINAALGNM---EEDDWHWHMYDTVKGSDWLGDQDAI 136
+G T V++ + RSH+ AAQGG+ A+LGN + D+ H DTVKGSDW DQ
Sbjct: 27 KGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKVA 86
Query: 137 HYMTREAPKAVIELENYGMPFSRTTDGK---------------------IYQRAFGGQSL 175
APKA+ EL +G+P++R G I+ R FGG
Sbjct: 87 RMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGT-- 144
Query: 176 KYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALC 235
+ R C AD TGH++L + + L+ + A+ LI ++G+C G +
Sbjct: 145 ------KKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRD 198
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPN-EDLEFVQFHP 294
L G I + A T++ATGGYGR Y + T+A C G GTA+ G+ ++E VQFHP
Sbjct: 199 LVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHP 258
Query: 295 TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGV 354
T ++ +G L+TEGCRG+GG L + +G RFM Y P K+LASRDVVSR M IR+G+GV
Sbjct: 259 TPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGV 318
Query: 355 -GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTN 413
P H++L + L + + L + E FAG+D + PVLP HY+MGGI T+
Sbjct: 319 QSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTD 378
Query: 414 YKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE-- 471
Y+G+ + GL++AGEA+C +HG NRLG NS+ + VV G + AE
Sbjct: 379 YRGEAK---------LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 429
Query: 472 ----NKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
+ ++ F + A + + +KG ++ M+ M +FR
Sbjct: 430 NTQVDLETKTLEKFV----KGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGP 485
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
L++ ++ LYK ++ + ++ L N +L E + ++ A+ A +R ESRG
Sbjct: 486 HLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRG 545
Query: 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYR 639
AH RED+ R D++++ P P E+ +DVN ++ YR
Sbjct: 546 AHNREDYPKR-DDINWLNRTLASWPNP-EQTLPTLEYEALDVNEMEIAPGYR 595
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 160/536 (29%), Positives = 251/536 (46%), Gaps = 72/536 (13%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
+ V++K T T AQGGI A E D H+ DT+ + D+ A+ ++
Sbjct: 32 QVIVLSKGPVTEGSTFYAQGGIAAVFD--ETDSIDSHVEDTLIAGAGICDRHAVEFVASN 89
Query: 143 APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGK-GGQAHR-CCAVADRTGHSLLHT 200
A V L + G+ F + + G +S + GG +HR AD TG + T
Sbjct: 90 ARSCVQWLIDQGVLFD------THIQPNGEESYHLTREGGHSHRRILHAADATGREVETT 143
Query: 201 LYGQSLRYDCNYFVEYF-ALDLIIENG-------ECKGVIALCLEDGSIHRFNANNTVLA 252
L ++L + +E A+DLI+ + G ++ +A VLA
Sbjct: 144 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLA 203
Query: 253 TGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIY---GAGCLITEGCR 309
TGG + Y T+ +GDG AM RAG +LEF QFHPT +Y L+TE R
Sbjct: 204 TGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALR 263
Query: 310 GEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLP 369
GEG YL +G RFM + +LA RD+V+R++ E++ +G D ++L + H P
Sbjct: 264 GEGAYLKRPDGTRFMPDFDERG-ELAPRDIVARAIDHEMKR---LGADC--MFLDISHKP 317
Query: 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429
+ + Q P I E ++ G+D+T+EP+P++P HY GG+ + G+ +
Sbjct: 318 ADFIRQHFPMIYEK-LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRT---------DV 367
Query: 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS 489
GLYA GE S + +HGANR+ +NSLL+ +V+G + A+ I P+A + S+
Sbjct: 368 EGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRR-------MPYAHDI--ST 418
Query: 490 VANLDWVRHAKGDITTADLRLTMQKT-------MQTYAAVFRTQETLQEGCNKMAALYKD 542
+ D R + D R+ +Q M Y + RT + L+ ++ L ++
Sbjct: 419 LPPWDESR-----VENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQE 473
Query: 543 L----AHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDF 594
+ AH +V + LEL+NL+ A + A RKESRG H D+
Sbjct: 474 IDEYYAHFRVSN----------NLLELRNLVQVAELIVRCAMMRKESRGLHFTLDY 519
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 250/536 (46%), Gaps = 72/536 (13%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
+ V++K T T AQGGI A E D H+ DT+ + D+ A+ ++
Sbjct: 32 QVIVLSKGPVTEGSTFYAQGGIAAVFD--ETDSIDSHVEDTLIAGAGICDRHAVEFVASN 89
Query: 143 APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGK-GGQAHR-CCAVADRTGHSLLHT 200
A V L + G+ F + + G +S + GG +HR AD TG + T
Sbjct: 90 ARSCVQWLIDQGVLFD------THIQPNGEESYHLTREGGHSHRRILHAADATGREVETT 143
Query: 201 LYGQSLRYDCNYFVEYF-ALDLIIENG-------ECKGVIALCLEDGSIHRFNANNTVLA 252
L ++L + +E A+DLI+ + G ++ +A VLA
Sbjct: 144 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLA 203
Query: 253 TGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIY---GAGCLITEGCR 309
TGG + Y T+ +GDG AM RAG +LEF QFHPT +Y L+TE R
Sbjct: 204 TGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALR 263
Query: 310 GEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLP 369
GEG YL +G RFM + +LA RD+V+R++ E++ +G D ++L + H P
Sbjct: 264 GEGAYLKRPDGTRFMPDFDERG-ELAPRDIVARAIDHEMKR---LGADC--MFLDISHKP 317
Query: 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429
+ + Q P I E ++ G+D+T+EP+P++P HY GG+ + G+ +
Sbjct: 318 ADFIRQHFPMIYEK-LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRT---------DV 367
Query: 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS 489
GLYA GE S + +HGAN + +NSLL+ +V+G + A+ I P+A + S+
Sbjct: 368 EGLYAIGEVSYTGLHGANLMASNSLLECLVYGWSAAEDITRR-------MPYAHDI--ST 418
Query: 490 VANLDWVRHAKGDITTADLRLTMQKT-------MQTYAAVFRTQETLQEGCNKMAALYKD 542
+ D R + D R+ +Q M Y + RT + L+ ++ L ++
Sbjct: 419 LPPWDESR-----VENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQE 473
Query: 543 L----AHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDF 594
+ AH +V + LEL+NL+ A + A RKESRG H D+
Sbjct: 474 IDEYYAHFRVSN----------NLLELRNLVQVAELIVRCAMMRKESRGLHFTLDY 519
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 147/517 (28%), Positives = 235/517 (45%), Gaps = 86/517 (16%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMT 140
G K +I+K S T A+GG+ A++G+ +D H DT++ D L D ++Y+T
Sbjct: 22 GKKVTLISKRIDGGS-TPIAKGGVAASVGS--DDSPELHAQDTIRVGDGLCDVKTVNYVT 78
Query: 141 REAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHT 200
EA + E++G F + L+ G R D TG + +
Sbjct: 79 SEAKNVIETFESWGFEFE--------------EDLRLEGGHTKRRVLHRTDETGREIFNF 124
Query: 201 LYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY 260
L + R + +E +++ +++G+ G + + G + + + VLATGGY Y
Sbjct: 125 LL-KLAREEGIPIIEDRLVEIRVKDGKVTGFV--TEKRGLVE--DVDKLVLATGGYSYLY 179
Query: 261 FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP--TGIYGAGCLITEGCRGEGGYLINS 318
++ T GDG A+ +AG D+EFVQFHP T + G L+TE RGEG +IN
Sbjct: 180 EYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGEVFLLTETLRGEGAQIINE 239
Query: 319 EGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLP 378
GERF+ Y +LA RD++SR++ IE+ +G V++ L + ED ++ P
Sbjct: 240 NGERFLFNYDKRG-ELAPRDILSRAIYIEMLKGH-------KVFIDLSKI--EDFERKFP 289
Query: 379 GISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEA 438
+++ + G + + IP+ P H+ GGI N + G+ I++ LYA GE
Sbjct: 290 VVAKY-LARHGHNY-KVKIPIFPAAHFVDGGIRVN--------IRGESNIVN-LYAIGEV 338
Query: 439 SCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRH 498
S S +HGANRL +NSLL+ +VFG P ++ ++ D + H
Sbjct: 339 SDSGLHGANRLASNSLLEGLVFGINL---------------PRYVDSSWEGISTDDGIVH 383
Query: 499 AKGDITTADLRLT-MQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNT 557
+ L L +++ + R +E L + N ++
Sbjct: 384 SVRISGNKTLSLKEIRRINWENVGIIRNEEKLVKAINTYSS------------------- 424
Query: 558 DLVETLELQNLMINAIQTMFAAENRKESRGAHAREDF 594
QN I + T AAE RKESRG H RED+
Sbjct: 425 ------STQNEAIISYLTALAAEIRKESRGNHFREDY 455
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 112/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VHY MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHYTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 194/442 (43%), Gaps = 70/442 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLASR---------------DVVSRSMT-I 346
++TE RG G L+N EG+RF+ KD AS D V +S++ I
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEI--TTKDKASAAILAQTGKSAYLIFDDSVRKSLSKI 432
Query: 347 EIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE---------- 395
+ G GV P D + ++L + D ++ +++ +G D E
Sbjct: 433 DKYIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNE 491
Query: 396 ----PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGA 451
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG
Sbjct: 492 GNYYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGG 547
Query: 452 NSLLDLVVFGRACAKTIAEENK 473
N++ D++ FGR + A+ +K
Sbjct: 548 NAISDIITFGRLAGEEAAKYSK 569
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 192/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHATMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE +G G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVKGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 193/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++T+ RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTDAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 193/443 (43%), Gaps = 72/443 (16%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHR---CCAVADR 192
+ ++ + +V + G + GG S+ +AHR C V
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGCGV--- 253
Query: 193 TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVL 251
G ++ LY +++ + + + ++++ ++ G KG++ + G + A+ +L
Sbjct: 254 -GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVIL 311
Query: 252 ATGGYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYG 299
ATGG+ + F T+ GDG + AG +D++++Q HPT
Sbjct: 312 ATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVK 371
Query: 300 AGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSM-T 345
G ++TE RG G L+N EG+RF+ K A+ D V +S+
Sbjct: 372 GGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLCK 431
Query: 346 IEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE--------- 395
I+ G GV P D + ++L + D ++ +++ +G D E
Sbjct: 432 IDKYIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALN 490
Query: 396 -----PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG 450
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG
Sbjct: 491 EGNYYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLG 546
Query: 451 ANSLLDLVVFGRACAKTIAEENK 473
N++ D++ FGR + A+ +K
Sbjct: 547 GNAISDIITFGRLAGEEAAKYSK 569
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 192/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++ HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 192/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++ HPT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 192/440 (43%), Gaps = 66/440 (15%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEE-----DDWHWHMYDTVKGSDWLGDQDA 135
G K +I K + A GG+NAA + ++ D DT+KG + D
Sbjct: 149 GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPAL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ ++ + +V + G + GG S+ +AHR A H
Sbjct: 209 VKVLSSHSKDSVDWMTAMGADLTDVG-------MMGGASVN-----RAHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254
++ LY +++ + + + ++++ ++ G KG++ + G + A+ +LATG
Sbjct: 257 -VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ GDG + AG +D++++Q PT G
Sbjct: 315 GFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAAPTLSVKGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSMT-IEI 348
++TE RG G L+N EG+RF+ K A+ D V +S++ I+
Sbjct: 375 MVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDK 434
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISE-TAMIFAGVDVTRE------------ 395
G GV P D + ++L + D ++ +++ +G D E
Sbjct: 435 YIGLGVAPTADSL-VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGN 493
Query: 396 --PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
I V P VH+ MGG+ + K +V+ N + ++I GLY AGE + VHGANRLG N+
Sbjct: 494 YYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEVT-GGVHGANRLGGNA 549
Query: 454 LLDLVVFGRACAKTIAEENK 473
+ D++ FGR + A+ +K
Sbjct: 550 ISDIITFGRLAGEEAAKYSK 569
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/446 (26%), Positives = 194/446 (43%), Gaps = 76/446 (17%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNME-----EDDWHWHMYDTVKGSDWLGDQDA 135
G K ++ K +T A GG+NAA + ED + DT+KG + D +
Sbjct: 149 GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPEL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ + + ++ L + G T G++ GG S+ ++HR A H
Sbjct: 209 VKVLANNSSDSIDWLTSMGADM--TDVGRM-----GGASVN-----RSHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATG 254
+ L+ +++ + + + ++ + +G+ GV+ G + A+ V+A G
Sbjct: 257 -VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIKADAVVIAAG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ TGDG + +AG DLE++Q HPT G
Sbjct: 315 GFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSM-TIE- 347
+ITE RG G ++N EG RFM K A+ D + +S+ IE
Sbjct: 375 MITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEG 434
Query: 348 ------IREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGI-----SETAMIFAGVDVTRE- 395
++EG+ + + + Q+ +P +L + + S F D+ RE
Sbjct: 435 YVHLNIVKEGKTI----EELAKQI-DVPAAELAKTVTAYNGFVKSGKDAQFERPDLPREL 489
Query: 396 ------PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449
+ + P VH+ MGG+ + K +V + G K I GLYAAGE + VHGANRL
Sbjct: 490 VVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTG--KPITGLYAAGEVT-GGVHGANRL 546
Query: 450 GANSLLDLVVFGR---ACAKTIAEEN 472
G N++ D+V +GR A A A++N
Sbjct: 547 GGNAISDIVTYGRIAGASAAKFAKDN 572
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 115/446 (25%), Positives = 193/446 (43%), Gaps = 76/446 (17%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNME-----EDDWHWHMYDTVKGSDWLGDQDA 135
G K ++ K +T A GG+NAA + ED + DT+KG + D +
Sbjct: 149 GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPEL 208
Query: 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGH 195
+ + + ++ L + G T G++ GG S+ ++HR A H
Sbjct: 209 VKVLANNSSDSIDWLTSMGADM--TDVGRM-----GGASVN-----RSHRPTGGAGVGAH 256
Query: 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATG 254
+ L+ +++ + + + ++ + +G+ GV+ G + A+ V+A G
Sbjct: 257 -VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIKADAVVIAAG 314
Query: 255 GYGRAY------------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGC 302
G+ + F T+ TGDG + +AG DL+++Q HPT G
Sbjct: 315 GFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLQYIQAHPTYSPAGGV 374
Query: 303 LITEGCRGEGGYLINSEGERFMERYAPVAKDLAS-------------RDVVSRSM-TIE- 347
+ITE RG G ++N EG RFM K A+ D + +S+ IE
Sbjct: 375 MITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEG 434
Query: 348 ------IREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGI-----SETAMIFAGVDVTRE- 395
++EG+ + + + Q+ +P +L + + S F D+ RE
Sbjct: 435 YVHLNIVKEGKTI----EELAKQI-DVPAAELAKTVTAYNGFVKSGKDAQFERPDLPREL 489
Query: 396 ------PIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449
+ + P VH+ MGG+ + K +V + K I GLYAAGE + VHGANRL
Sbjct: 490 VVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTA--KPITGLYAAGEVT-GGVHGANRL 546
Query: 450 GANSLLDLVVFGR---ACAKTIAEEN 472
G N++ D+V +GR A A A++N
Sbjct: 547 GGNAISDIVTYGRIAGASAAKFAKDN 572
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 184/446 (41%), Gaps = 84/446 (18%)
Query: 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNME-----EDDWHWHMYDTVKGSDWLGDQDA 135
G ++ K + +++ + GG+NA + ED W + D +KG D
Sbjct: 144 GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKL 203
Query: 136 IHYMTREAPKAVIELENYGM---PFSRTTDGKI--YQRAFGGQSLKYGKGGQAHRCCAVA 190
+ + ++ V LE+ G R+ ++ R GG+S
Sbjct: 204 VTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKS---------------- 247
Query: 191 DRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTV 250
+G ++ TL + + + + L++ + + + + A + V
Sbjct: 248 --SGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVV 305
Query: 251 LATGGYGR-----AYF-----SCTSAH--TCTGDGTAMISRAGLPNEDLEFVQFHPTGIY 298
LATGGYG AY+ TS++ T TGDG M G D+++VQ HPT
Sbjct: 306 LATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAHPTVGK 365
Query: 299 GAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSR-----------SMTIE 347
+ LI+E RG G ++N +G RF+ +D AS ++ + + +
Sbjct: 366 DSRILISETVRGVGAVMVNKDGNRFISEL--TTRDKASDAILKQPGQFAWIIFDNQLYKK 423
Query: 348 IREGRGVGPDKDHVYLQLHHLPPEDLHQ----RLPGISETAMIFAG-------------- 389
+ RG DH+ + E L + ++ +++T + G
Sbjct: 424 AKMVRGY----DHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFGRAD 479
Query: 390 --VDVTREP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVH 444
+++T+ P + V P +H+ MGG+ N VL + Q K I GL+AAGE + VH
Sbjct: 480 MPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVL---DLQSKPIDGLFAAGEVT-GGVH 535
Query: 445 GANRLGANSLLDLVVFGRACAKTIAE 470
G NRLG N++ D VVFGR A+
Sbjct: 536 GYNRLGGNAIADTVVFGRIAGDNAAK 561
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 117/548 (21%), Positives = 198/548 (36%), Gaps = 116/548 (21%)
Query: 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV 189
L +D + R V E +G+P +T DGK Y R Q + +G+ + A
Sbjct: 103 LAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAA 161
Query: 190 ADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGE---CKGVIALCLEDGSIHRFNA 246
G N + F +L+ +N + G + + + + F A
Sbjct: 162 KMAVGEE--------------NIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA 207
Query: 247 NNTVLATGG-------------YGRAYFSCTSAHTCTGDGTAMISRAG--LPNEDLEFVQ 291
+LATGG GR +++ TG G M +AG L + F+
Sbjct: 208 KAVILATGGATLLFRPRSTGEAAGRTWYAIFD----TGSGYYMGLKAGAMLTQFEHRFIP 263
Query: 292 FHPTGIYG--AGCLITEGCRGEGGYLINSEGERF-------MERYAPV-AKDLASRDVVS 341
F YG + C+ + Y GE + +E+Y P A + +
Sbjct: 264 FRFKDGYGPVGAWFLFFKCKAKNAY-----GEEYIKTRAAELEKYKPYGAAQPIPTPLRN 318
Query: 342 RSMTIEIREGRG-------------VGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFA 388
+ +EI +G G DK +L H+ E L A+++A
Sbjct: 319 HQVMLEIMDGNQPIYMHTEEALAELAGGDKK----KLKHIYEEAFEDFLDMTVSQALLWA 374
Query: 389 --GVDVTREPIPVLPTVHYNMGG---------------IPTNYKGQVLTHVNGQDKIIHG 431
+D +P P Y MG +P Y ++ + + G
Sbjct: 375 CQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPEEY-AKLFPLKYNRMTTVKG 433
Query: 432 LYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPI-KPFAANAGESSV 490
L+A G+ + ++ H + + S + + +A + I E+ KP I + +
Sbjct: 434 LFAIGDCAGANPH---KFSSGSFTEGRIAAKAAVRFILEQ-KPNPEIDDAVVEELKKKAY 489
Query: 491 ANLDWVRHAKGDITTADL-----------RLTMQKTMQTYAA----VFRTQE-TLQEGCN 534
A ++ K D++TAD + +QK M YAA +++T E LQ
Sbjct: 490 APMERFMQYK-DLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALE 548
Query: 535 KMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESR--GAHARE 592
+A L +DL L D +L+ EL + + A + RKE+R G + R
Sbjct: 549 LLAFLKEDLEKLAARDLH-----ELMRAWELVHRVWTAEAHVRHMLFRKETRWPGYYYRT 603
Query: 593 DFKVRVDE 600
D+ DE
Sbjct: 604 DYPELNDE 611
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 116/548 (21%), Positives = 197/548 (35%), Gaps = 116/548 (21%)
Query: 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV 189
L +D + R V E +G+P +T DGK Y R Q + +G+ + A
Sbjct: 103 LAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAA 161
Query: 190 ADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGE---CKGVIALCLEDGSIHRFNA 246
G N + F +L+ + + G + + + + F A
Sbjct: 162 KMAVGEE--------------NIYERVFIFELLKDKNDPNAVAGAVGFSVREPKFYVFKA 207
Query: 247 NNTVLATGG-------------YGRAYFSCTSAHTCTGDGTAMISRAG--LPNEDLEFVQ 291
+LATGG GR +++ TG G M +AG L + F+
Sbjct: 208 KAVILATGGATLLFRPRSTGEAAGRTWYAIFD----TGSGYYMGLKAGAMLTQFEHRFIP 263
Query: 292 FHPTGIYG--AGCLITEGCRGEGGYLINSEGERF-------MERYAPV-AKDLASRDVVS 341
F YG + C+ + Y GE + +E+Y P A + +
Sbjct: 264 FRFKDGYGPVGAWFLFFKCKAKNAY-----GEEYIKTRAAELEKYKPYGAAQPIPTPLRN 318
Query: 342 RSMTIEIREGRG-------------VGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFA 388
+ +EI +G G DK +L H+ E L A+++A
Sbjct: 319 HQVMLEIMDGNQPIYMHTEEALAELAGGDKK----KLKHIYEEAFEDFLDMTVSQALLWA 374
Query: 389 --GVDVTREPIPVLPTVHYNMGG---------------IPTNYKGQVLTHVNGQDKIIHG 431
+D +P P Y MG +P Y ++ + + G
Sbjct: 375 CQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPEEY-AKLFPLKYNRMTTVKG 433
Query: 432 LYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPI-KPFAANAGESSV 490
L+A G+ + ++ H + + S + + +A + I E+ KP I + +
Sbjct: 434 LFAIGDCAGANPH---KFSSGSFTEGRIAAKAAVRFILEQ-KPNPEIDDAVVEELKKKAY 489
Query: 491 ANLDWVRHAKGDITTADL-----------RLTMQKTMQTYAA----VFRTQE-TLQEGCN 534
A ++ K D++TAD + +QK M YAA +++T E LQ
Sbjct: 490 APMERFMQYK-DLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALE 548
Query: 535 KMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESR--GAHARE 592
+A L +DL L D +L+ EL + + A + RKE+R G + R
Sbjct: 549 LLAFLKEDLEKLAARDLH-----ELMRAWELVHRVWTAEAHVRHMLFRKETRWPGYYYRT 603
Query: 593 DFKVRVDE 600
D+ DE
Sbjct: 604 DYPELNDE 611
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 98/446 (21%), Positives = 158/446 (35%), Gaps = 86/446 (19%)
Query: 83 KTAVITKLFPTRSHTVAAQG--GINAALGNMEEDDWHWHMYDTVKGSDWLG--DQDAIHY 138
K ++ K RS VA QG IN LG+ DD Y + +D +G +D I+
Sbjct: 53 KILLVDKASLERSGAVA-QGLSAINTYLGDNNADD-----YVRMVRTDLMGLVREDLIYD 106
Query: 139 MTREAPKAVIELENYGMPF------SRTTDGKIYQRAFGGQSLKYG-KGGQAHRCCAVAD 191
+ R +V E +G+P DG Q G+SL+ G K ++ R + +
Sbjct: 107 LGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGA--QAKAAGKSLRNGDKPVRSGRWQIMIN 164
Query: 192 RTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENG---ECKGVIALCLEDGSIHRFNANN 248
+ ++ ++ F + L+++ G + L +H F AN
Sbjct: 165 GESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANA 224
Query: 249 TVLATG-------------GYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295
V+A G G GRA++ +A G M ++ G +E +F P
Sbjct: 225 MVVACGGAVNVYRPRSVGEGMGRAWYPVWNA----GSTYTMCAQVGAEMTMME-NRFVPA 279
Query: 296 ------GIYGAGCLITEG----CRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMT 345
G GA L+ + C+GE N + E + + + M
Sbjct: 280 RFKDGYGPVGAWFLLFKAKATNCKGEDYCATNRAMLKPYEERGYAKGHVIPTCLRNHMML 339
Query: 346 IEIREGRGVGPDKDHVYLQL----------HHLPPEDLHQRLPGISETAMIFAGVDVTRE 395
E+REGRG LQ HL E L A ++A + E
Sbjct: 340 REMREGRGPIYMDTKTALQTSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPE 399
Query: 396 P--IPVLPTVHYNMGG----------------IPTNYK-----GQV---LTHVNGQDKII 429
++PT Y +G +P +YK G+V +T V G
Sbjct: 400 ERGSEIMPTEPYLLGSHSGCCGIWASGPDEAWVPEDYKVRAANGKVYNRMTTVEGLWTCA 459
Query: 430 HGLYAAGEASCSSVHGANRLGANSLL 455
G+ A+G S H R+ ++
Sbjct: 460 DGVGASGHKFSSGSHAEGRIVGKQMV 485
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|E Chain E, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|F Chain F, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|G Chain G, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|H Chain H, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|J Chain J, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 216
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 280 AGLPNEDLEFVQFHPTGIYGAGCLITE-GCRGEGGYLINS-----------EGERFMERY 327
+G+P ++ F H G +G G T G G G ++N+ +G +MER+
Sbjct: 71 SGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGVEYMERF 130
Query: 328 APVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIF 387
K + + + ++ + R G V D + E L +RL E+A +
Sbjct: 131 EDGGKPVGTLKKIGKT---KKRNGTSVTFLPDDTIFSTTNFSYEILAERL---RESAFLL 184
Query: 388 AGVDVT 393
GV +T
Sbjct: 185 KGVKIT 190
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 95 SHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYG 154
+HT++ GG G D W + T++G W G Y P A+ LE
Sbjct: 318 AHTLSPSGGFGMNTGIGSAADLGWKLAATLRG--WAGPGLLATYEEERRPVAITSLEEAN 375
Query: 155 MPFSRTTDGKI 165
+ RT D ++
Sbjct: 376 VNLRRTMDREL 386
>pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 358 KDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNY 414
K++V L L L P L++R+ E A FA D++ + I + ++ MGG NY
Sbjct: 242 KNYVELYLKSLIPTILYERINNRWEVA--FAVSDISFQQISFVNSIATTMGGTHVNY 296
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 95 SHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYG 154
+HT++ GG G D W + T++G W G Y P A+ LE
Sbjct: 318 AHTLSPSGGFGMNTGIGSAADLGWKLAATLRG--WAGPGLLATYEEERRPVAITSLEEAN 375
Query: 155 MPFSRTTDGKI 165
+ RT D ++
Sbjct: 376 VNLRRTMDREL 386
>pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 358 KDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNY 414
K++V L L L P L++R+ E A FA D++ + I + ++ MGG NY
Sbjct: 242 KNYVELYLKSLIPTILYERINNRWEVA--FAVSDISFQQISFVNSIATTMGGTHVNY 296
>pdb|3IGY|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate
Mutase At High Cobalt Concentrations
pdb|3IGZ|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate
Mutase At Low Cobalt Concentration
Length = 561
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 337 RDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQR 376
+D+ R++ I + +G G+GP+ D+ + + P D H+R
Sbjct: 10 KDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRR 49
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 209 DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHT 268
DC Y VEY II+ G+ G + +EDG + L T G G+ + +
Sbjct: 60 DCMYPVEYGKDSCIIKEGDV-GSLVYVMEDGKVE-VTKEGVKLCTMGPGKVFGELAILYN 117
Query: 269 CTGDGTA 275
CT T
Sbjct: 118 CTRTATV 124
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 209 DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHT 268
DC Y VEY II+ G+ G + +EDG + L T G G+ + +
Sbjct: 44 DCMYPVEYGKDSCIIKEGDV-GSLVYVMEDGKVE-VTKEGVKLCTMGPGKVFGELAILYN 101
Query: 269 CTGDGTA 275
CT T
Sbjct: 102 CTRTATV 108
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 80 EGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136
E K + K + T+ T+ A+ + LG + WH H+ VK S W ++D I
Sbjct: 14 EDQKVIELVKKYGTKQWTLIAKH-LKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRI 69
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 86 VITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE 142
++ K P R +A + +G + WH H+ VK + W ++D I Y +
Sbjct: 18 LVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,586,192
Number of Sequences: 62578
Number of extensions: 899996
Number of successful extensions: 2066
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 76
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)