Query psy15089
Match_columns 661
No_of_seqs 444 out of 4205
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:16:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00128 Succinate dehydrogena 100.0 2E-107 4E-112 917.0 64.9 591 51-661 43-635 (635)
2 KOG2403|consensus 100.0 5E-111 1E-115 867.1 30.4 614 28-661 27-642 (642)
3 PTZ00139 Succinate dehydrogena 100.0 1E-105 2E-110 904.1 62.6 592 52-661 23-617 (617)
4 PRK09078 sdhA succinate dehydr 100.0 2E-104 5E-109 892.3 63.5 593 50-661 4-598 (598)
5 PRK08626 fumarate reductase fl 100.0 1E-102 2E-107 883.0 59.5 565 57-661 4-598 (657)
6 PRK08958 sdhA succinate dehydr 100.0 1E-102 3E-107 874.7 58.6 580 57-661 6-588 (588)
7 COG0029 NadB Aspartate oxidase 100.0 2E-103 4E-108 811.7 43.8 498 60-628 9-512 (518)
8 PRK06452 sdhA succinate dehydr 100.0 4E-101 8E-106 861.7 58.1 559 57-661 4-566 (566)
9 PRK08205 sdhA succinate dehydr 100.0 2E-100 4E-105 860.0 59.7 574 57-661 4-583 (583)
10 PRK07057 sdhA succinate dehydr 100.0 2E-100 5E-105 858.4 59.2 581 56-661 10-591 (591)
11 TIGR01176 fum_red_Fp fumarate 100.0 3E-100 6E-105 854.0 58.5 560 57-661 2-579 (580)
12 PRK05945 sdhA succinate dehydr 100.0 9E-100 2E-104 853.9 58.7 566 57-661 2-575 (575)
13 PRK08641 sdhA succinate dehydr 100.0 4.2E-99 9E-104 848.0 60.1 560 58-661 3-579 (589)
14 PRK07573 sdhA succinate dehydr 100.0 4.7E-99 1E-103 852.1 57.2 562 57-661 34-639 (640)
15 PRK09231 fumarate reductase fl 100.0 1.1E-98 2E-103 843.3 58.7 560 57-661 3-580 (582)
16 TIGR01811 sdhA_Bsu succinate d 100.0 1.4E-98 3E-103 843.8 57.5 558 61-661 1-603 (603)
17 PRK06069 sdhA succinate dehydr 100.0 9.3E-98 2E-102 838.8 58.4 567 56-661 3-577 (577)
18 PRK05675 sdhA succinate dehydr 100.0 6.1E-98 1E-102 835.5 56.0 567 71-661 1-570 (570)
19 COG1053 SdhA Succinate dehydro 100.0 4.7E-99 1E-103 828.9 44.8 551 55-643 3-561 (562)
20 TIGR01816 sdhA_forward succina 100.0 3E-97 7E-102 830.0 58.7 565 77-661 1-565 (565)
21 PRK07803 sdhA succinate dehydr 100.0 1.5E-96 3E-101 831.8 58.3 564 57-661 7-619 (626)
22 TIGR01812 sdhA_frdA_Gneg succi 100.0 1.1E-94 2.5E-99 814.8 59.8 563 60-661 1-566 (566)
23 PLN02815 L-aspartate oxidase 100.0 1.1E-93 2.4E-98 798.6 52.9 527 56-628 27-571 (594)
24 PRK07395 L-aspartate oxidase; 100.0 7E-92 1.5E-96 782.0 52.7 520 56-626 7-545 (553)
25 PRK06263 sdhA succinate dehydr 100.0 3.4E-90 7.3E-95 772.8 57.3 523 56-627 5-534 (543)
26 PRK09077 L-aspartate oxidase; 100.0 5E-88 1.1E-92 752.7 54.3 505 56-600 6-524 (536)
27 PRK07804 L-aspartate oxidase; 100.0 2.5E-87 5.5E-92 747.0 55.3 511 54-636 12-533 (541)
28 PRK08071 L-aspartate oxidase; 100.0 3.5E-86 7.6E-91 732.8 51.5 504 57-636 2-509 (510)
29 PRK07512 L-aspartate oxidase; 100.0 5E-86 1.1E-90 732.1 48.9 477 56-600 7-489 (513)
30 PRK13800 putative oxidoreducta 100.0 2.6E-84 5.7E-89 760.4 53.4 541 54-661 9-577 (897)
31 TIGR00551 nadB L-aspartate oxi 100.0 1.4E-83 3E-88 711.0 51.2 484 57-595 1-488 (488)
32 TIGR02061 aprA adenosine phosp 100.0 1.4E-83 3.1E-88 716.7 51.3 522 60-642 1-611 (614)
33 PRK08275 putative oxidoreducta 100.0 1E-81 2.2E-86 705.3 52.5 523 53-642 4-552 (554)
34 PRK06854 adenylylsulfate reduc 100.0 1.9E-81 4.2E-86 706.7 53.4 528 54-642 7-601 (608)
35 PRK08401 L-aspartate oxidase; 100.0 3.7E-78 7.9E-83 663.4 47.0 450 59-600 2-453 (466)
36 PRK06175 L-aspartate oxidase; 100.0 1.3E-63 2.8E-68 542.2 42.5 423 57-534 3-431 (433)
37 PRK06481 fumarate reductase fl 100.0 1.5E-51 3.2E-56 456.9 36.5 394 51-473 54-504 (506)
38 KOG2404|consensus 100.0 2.6E-50 5.7E-55 390.9 21.8 373 60-468 11-467 (477)
39 PF00890 FAD_binding_2: FAD bi 100.0 3.6E-48 7.9E-53 422.8 34.1 374 60-454 1-417 (417)
40 TIGR01813 flavo_cyto_c flavocy 100.0 3.7E-47 8E-52 417.1 34.2 374 60-466 1-439 (439)
41 PTZ00306 NADH-dependent fumara 100.0 1E-46 2.2E-51 451.7 40.4 395 56-475 407-905 (1167)
42 PRK08274 tricarballylate dehyd 100.0 3.7E-46 7.9E-51 412.1 33.0 392 56-473 2-462 (466)
43 PRK07121 hypothetical protein; 100.0 3.2E-45 6.9E-50 406.4 36.3 401 54-471 16-490 (492)
44 PRK12837 3-ketosteroid-delta-1 100.0 6E-45 1.3E-49 404.7 38.3 400 54-470 3-510 (513)
45 PRK12845 3-ketosteroid-delta-1 100.0 4.1E-45 8.8E-50 407.5 36.8 409 50-470 8-563 (564)
46 PRK12844 3-ketosteroid-delta-1 100.0 1.6E-44 3.4E-49 404.0 35.3 409 55-473 3-551 (557)
47 PRK12834 putative FAD-binding 100.0 5.8E-44 1.3E-48 400.4 35.5 401 57-470 3-548 (549)
48 PRK12835 3-ketosteroid-delta-1 100.0 3.8E-43 8.1E-48 394.2 36.4 412 53-474 6-572 (584)
49 TIGR02485 CobZ_N-term precorri 100.0 3.9E-42 8.5E-47 376.0 35.8 379 63-472 1-430 (432)
50 PRK12839 hypothetical protein; 100.0 2.2E-40 4.9E-45 370.5 35.7 408 56-471 6-567 (572)
51 PRK07843 3-ketosteroid-delta-1 100.0 1.4E-40 3.1E-45 372.6 33.3 409 54-471 3-556 (557)
52 PRK12843 putative FAD-binding 100.0 3.7E-40 7.9E-45 370.8 36.7 412 52-473 10-573 (578)
53 PRK12842 putative succinate de 100.0 7.6E-39 1.6E-43 360.6 39.1 409 56-473 7-568 (574)
54 PRK06134 putative FAD-binding 100.0 7.4E-38 1.6E-42 352.4 37.4 411 54-473 8-572 (581)
55 PF02910 Succ_DH_flav_C: Fumar 100.0 8.6E-33 1.9E-37 248.2 13.3 129 509-661 1-129 (129)
56 COG2081 Predicted flavoprotein 100.0 3.6E-27 7.8E-32 240.3 27.6 358 57-472 2-407 (408)
57 PF03486 HI0933_like: HI0933-l 99.9 1.8E-25 3.9E-30 238.8 17.4 346 59-467 1-409 (409)
58 COG3573 Predicted oxidoreducta 99.9 2.2E-24 4.8E-29 211.5 23.0 401 57-470 4-550 (552)
59 TIGR00275 flavoprotein, HI0933 99.9 8.1E-22 1.8E-26 212.9 29.2 347 62-466 1-400 (400)
60 COG1249 Lpd Pyruvate/2-oxoglut 99.7 7E-17 1.5E-21 174.0 11.9 50 56-113 2-51 (454)
61 TIGR03862 flavo_PP4765 unchara 99.7 1.5E-14 3.3E-19 152.3 27.0 326 81-472 1-375 (376)
62 KOG2415|consensus 99.6 5.3E-16 1.2E-20 157.0 10.3 191 25-259 46-258 (621)
63 PRK04176 ribulose-1,5-biphosph 99.6 1.4E-14 3.1E-19 146.3 16.0 143 57-257 24-173 (257)
64 KOG0405|consensus 99.6 7.2E-15 1.6E-19 145.9 10.5 147 56-257 18-165 (478)
65 COG0644 FixC Dehydrogenases (f 99.6 4.3E-13 9.3E-18 145.2 24.2 151 57-257 2-152 (396)
66 PLN02661 Putative thiazole syn 99.6 3.6E-14 7.8E-19 146.5 15.0 142 57-256 91-243 (357)
67 TIGR00292 thiazole biosynthesi 99.6 4.9E-14 1.1E-18 141.9 15.2 143 57-257 20-170 (254)
68 TIGR01421 gluta_reduc_1 glutat 99.6 2.9E-14 6.3E-19 156.7 13.6 46 57-111 1-46 (450)
69 KOG4716|consensus 99.5 8.9E-14 1.9E-18 137.6 15.1 152 56-257 17-173 (503)
70 PLN02546 glutathione reductase 99.5 7.3E-14 1.6E-18 156.0 15.8 151 56-257 77-228 (558)
71 PTZ00058 glutathione reductase 99.5 2.1E-14 4.5E-19 160.2 11.0 50 56-114 46-95 (561)
72 TIGR01424 gluta_reduc_2 glutat 99.5 3.9E-14 8.4E-19 155.8 12.5 45 58-111 2-46 (446)
73 COG1635 THI4 Ribulose 1,5-bisp 99.5 1.6E-13 3.4E-18 128.8 13.7 139 58-254 30-175 (262)
74 PLN02507 glutathione reductase 99.5 4.7E-13 1E-17 148.7 20.1 156 56-257 23-179 (499)
75 COG0492 TrxB Thioredoxin reduc 99.5 1.7E-13 3.6E-18 141.1 14.7 58 193-258 59-116 (305)
76 PRK06467 dihydrolipoamide dehy 99.5 9.3E-14 2E-18 153.6 13.6 46 57-110 3-48 (471)
77 TIGR01438 TGR thioredoxin and 99.5 1.7E-13 3.6E-18 151.6 14.6 56 58-113 2-57 (484)
78 PF01946 Thi4: Thi4 family; PD 99.5 2.7E-13 5.8E-18 128.5 13.7 138 57-254 16-162 (230)
79 PRK06115 dihydrolipoamide dehy 99.5 7.3E-13 1.6E-17 146.3 17.8 47 58-112 3-49 (466)
80 TIGR01423 trypano_reduc trypan 99.5 3E-13 6.4E-18 149.4 14.5 56 57-112 2-58 (486)
81 KOG1335|consensus 99.5 1E-13 2.2E-18 139.6 8.9 145 57-256 38-184 (506)
82 PRK06116 glutathione reductase 99.5 3.2E-13 7E-18 148.8 13.5 34 57-90 3-36 (450)
83 PTZ00052 thioredoxin reductase 99.5 3E-13 6.6E-18 150.3 13.2 55 58-112 5-59 (499)
84 PRK06370 mercuric reductase; V 99.5 6.8E-13 1.5E-17 146.8 15.8 48 55-111 2-49 (463)
85 PRK05329 anaerobic glycerol-3- 99.5 8.6E-12 1.9E-16 134.2 23.4 59 195-256 259-317 (422)
86 PRK10015 oxidoreductase; Provi 99.4 8.3E-12 1.8E-16 136.3 21.9 58 195-258 108-165 (429)
87 PRK11101 glpA sn-glycerol-3-ph 99.4 2.5E-12 5.4E-17 144.5 17.5 189 58-257 6-211 (546)
88 TIGR00136 gidA glucose-inhibit 99.4 5.4E-11 1.2E-15 131.3 26.1 151 59-258 1-155 (617)
89 PRK06416 dihydrolipoamide dehy 99.4 5.4E-12 1.2E-16 139.7 17.9 47 57-112 3-49 (462)
90 PRK07818 dihydrolipoamide dehy 99.4 9.9E-12 2.1E-16 137.6 18.9 45 58-111 4-48 (466)
91 PRK05249 soluble pyridine nucl 99.4 3.1E-11 6.7E-16 133.7 21.5 35 57-91 4-38 (461)
92 TIGR03143 AhpF_homolog putativ 99.4 7.1E-12 1.5E-16 141.2 15.8 35 57-91 3-37 (555)
93 PRK06327 dihydrolipoamide dehy 99.4 2.7E-12 5.8E-17 142.3 12.0 51 57-109 3-53 (475)
94 PRK14694 putative mercuric red 99.4 1.7E-11 3.6E-16 135.8 17.5 46 56-110 4-49 (468)
95 PRK15317 alkyl hydroperoxide r 99.3 7.2E-12 1.6E-16 140.3 13.4 114 56-257 209-322 (517)
96 TIGR03140 AhpF alkyl hydropero 99.3 1.7E-12 3.7E-17 145.1 7.6 114 56-257 210-323 (515)
97 PRK06292 dihydrolipoamide dehy 99.3 4.1E-12 9E-17 140.5 10.3 34 57-90 2-35 (460)
98 PRK07845 flavoprotein disulfid 99.3 1.7E-11 3.7E-16 135.5 14.9 148 60-258 3-152 (466)
99 PTZ00153 lipoamide dehydrogena 99.3 7.4E-12 1.6E-16 141.7 11.6 50 56-112 114-163 (659)
100 PRK14727 putative mercuric red 99.3 3E-11 6.6E-16 134.0 16.2 51 53-111 11-61 (479)
101 PRK07846 mycothione reductase; 99.3 5E-11 1.1E-15 131.1 17.3 43 58-111 1-43 (451)
102 KOG0404|consensus 99.3 4.3E-12 9.2E-17 119.0 7.3 67 399-473 253-319 (322)
103 TIGR02028 ChlP geranylgeranyl 99.3 1.5E-10 3.2E-15 125.4 20.4 63 195-258 93-161 (398)
104 COG2509 Uncharacterized FAD-de 99.3 1.8E-10 3.9E-15 119.8 19.7 62 194-260 172-233 (486)
105 PRK13748 putative mercuric red 99.3 1E-10 2.2E-15 132.8 19.5 46 57-111 97-142 (561)
106 TIGR02053 MerA mercuric reduct 99.3 1E-11 2.3E-16 137.4 11.2 33 59-91 1-33 (463)
107 TIGR01350 lipoamide_DH dihydro 99.3 8.4E-11 1.8E-15 130.2 18.2 33 58-90 1-33 (461)
108 PF01266 DAO: FAD dependent ox 99.3 7.5E-11 1.6E-15 125.6 16.9 181 60-258 1-204 (358)
109 PRK06912 acoL dihydrolipoamide 99.3 4.4E-11 9.6E-16 132.1 14.6 44 60-112 2-45 (458)
110 PRK12266 glpD glycerol-3-phosp 99.3 1.4E-10 3.1E-15 129.3 18.6 64 194-258 154-217 (508)
111 PLN02464 glycerol-3-phosphate 99.3 6.6E-11 1.4E-15 134.6 15.7 65 194-258 231-297 (627)
112 PRK05192 tRNA uridine 5-carbox 99.3 1.1E-10 2.4E-15 129.1 16.8 153 57-258 3-158 (618)
113 PF12831 FAD_oxidored: FAD dep 99.2 7.6E-12 1.7E-16 136.6 6.2 147 60-255 1-148 (428)
114 COG0578 GlpA Glycerol-3-phosph 99.2 1.6E-10 3.4E-15 125.4 16.0 195 57-259 11-227 (532)
115 PRK10157 putative oxidoreducta 99.2 1.6E-10 3.5E-15 126.3 16.4 57 195-257 108-164 (428)
116 PLN02697 lycopene epsilon cycl 99.2 4E-10 8.7E-15 124.7 19.4 58 195-258 192-249 (529)
117 PRK08010 pyridine nucleotide-d 99.2 1.1E-10 2.3E-15 128.5 14.5 46 58-110 3-48 (441)
118 TIGR01320 mal_quin_oxido malat 99.2 6.4E-10 1.4E-14 122.8 20.6 64 194-258 177-241 (483)
119 TIGR01292 TRX_reduct thioredox 99.2 2.3E-10 5E-15 119.0 16.2 111 59-257 1-112 (300)
120 TIGR02023 BchP-ChlP geranylger 99.2 4E-09 8.6E-14 114.1 26.2 62 195-258 92-156 (388)
121 PRK07251 pyridine nucleotide-d 99.2 1.8E-10 3.9E-15 126.6 15.9 34 58-91 3-36 (438)
122 TIGR03452 mycothione_red mycot 99.2 4.3E-11 9.4E-16 131.7 10.9 45 58-113 2-46 (452)
123 COG3634 AhpF Alkyl hydroperoxi 99.2 1.1E-11 2.4E-16 123.4 4.3 58 193-255 264-323 (520)
124 PRK12409 D-amino acid dehydrog 99.2 1.1E-09 2.3E-14 119.6 19.2 62 194-257 196-258 (410)
125 COG0579 Predicted dehydrogenas 99.2 5.9E-10 1.3E-14 118.6 16.3 193 57-257 2-211 (429)
126 PRK13369 glycerol-3-phosphate 99.2 9.1E-11 2E-15 130.9 10.6 63 194-258 154-216 (502)
127 PLN02463 lycopene beta cyclase 99.2 6.2E-09 1.4E-13 113.5 24.6 57 195-258 114-170 (447)
128 PRK00711 D-amino acid dehydrog 99.2 7.1E-10 1.5E-14 121.2 17.1 59 194-258 200-258 (416)
129 TIGR03329 Phn_aa_oxid putative 99.2 3E-10 6.5E-15 125.5 14.1 47 56-102 22-70 (460)
130 PRK10262 thioredoxin reductase 99.1 4.6E-11 9.9E-16 125.8 6.4 34 57-90 5-38 (321)
131 PF01134 GIDA: Glucose inhibit 99.1 3.6E-10 7.8E-15 118.8 12.7 150 60-258 1-153 (392)
132 TIGR01373 soxB sarcosine oxida 99.1 1.6E-09 3.4E-14 118.1 18.0 191 57-258 29-241 (407)
133 PRK11728 hydroxyglutarate oxid 99.1 2.9E-09 6.3E-14 115.4 18.1 182 58-257 2-204 (393)
134 PRK06126 hypothetical protein; 99.1 3.5E-09 7.5E-14 119.8 19.4 63 195-258 126-189 (545)
135 PF00732 GMC_oxred_N: GMC oxid 99.1 3.5E-09 7.5E-14 110.2 17.8 58 201-258 198-259 (296)
136 PF01494 FAD_binding_3: FAD bi 99.1 8.7E-10 1.9E-14 117.3 13.1 62 195-257 111-172 (356)
137 TIGR02032 GG-red-SF geranylger 99.1 1.3E-09 2.9E-14 112.9 14.0 59 195-258 91-149 (295)
138 PRK05257 malate:quinone oxidor 99.1 5.3E-09 1.2E-13 115.7 19.3 64 194-258 182-247 (494)
139 TIGR01377 soxA_mon sarcosine o 99.1 9.4E-10 2E-14 118.7 12.9 186 59-258 1-201 (380)
140 TIGR01372 soxA sarcosine oxida 99.1 3.7E-09 7.9E-14 126.7 18.4 37 56-92 161-197 (985)
141 PRK06185 hypothetical protein; 99.1 3.1E-09 6.7E-14 115.8 16.4 62 195-258 108-170 (407)
142 PRK12831 putative oxidoreducta 99.0 2.3E-09 4.9E-14 118.2 15.0 36 56-91 138-173 (464)
143 PRK12779 putative bifunctional 99.0 8.7E-09 1.9E-13 121.8 20.4 56 409-473 572-627 (944)
144 PRK09853 putative selenate red 99.0 2.2E-09 4.8E-14 125.0 15.0 35 58-92 539-573 (1019)
145 PF07992 Pyr_redox_2: Pyridine 99.0 2.2E-09 4.9E-14 104.6 12.7 57 201-257 64-122 (201)
146 COG3075 GlpB Anaerobic glycero 99.0 1.8E-09 4E-14 107.4 11.8 60 194-256 257-316 (421)
147 PLN02985 squalene monooxygenas 99.0 7E-09 1.5E-13 115.5 17.3 63 195-259 147-210 (514)
148 PRK05976 dihydrolipoamide dehy 99.0 3.9E-09 8.5E-14 117.1 15.2 46 57-111 3-48 (472)
149 PRK11259 solA N-methyltryptoph 99.0 2.9E-09 6.2E-14 114.7 13.5 184 58-258 3-205 (376)
150 TIGR03364 HpnW_proposed FAD de 99.0 5.5E-09 1.2E-13 112.1 15.5 47 59-105 1-47 (365)
151 PRK13339 malate:quinone oxidor 99.0 1.5E-08 3.2E-13 111.4 18.3 64 194-258 183-248 (497)
152 PRK07364 2-octaprenyl-6-methox 99.0 6.9E-09 1.5E-13 113.3 15.1 61 195-258 121-182 (415)
153 COG0654 UbiH 2-polyprenyl-6-me 99.0 8E-09 1.7E-13 111.7 15.2 59 195-258 104-163 (387)
154 PRK12775 putative trifunctiona 99.0 1.8E-08 4E-13 120.1 19.5 34 58-91 430-463 (1006)
155 PRK01747 mnmC bifunctional tRN 99.0 1.5E-08 3.3E-13 117.0 18.4 59 195-260 408-466 (662)
156 PLN00093 geranylgeranyl diphos 99.0 1.3E-08 2.8E-13 111.5 16.6 36 56-91 37-72 (450)
157 COG0665 DadA Glycine/D-amino a 99.0 8.9E-09 1.9E-13 111.3 15.1 193 57-259 3-214 (387)
158 KOG0042|consensus 99.0 1E-10 2.2E-15 123.1 -0.2 191 56-257 65-287 (680)
159 TIGR03315 Se_ygfK putative sel 99.0 7.4E-09 1.6E-13 121.3 15.0 35 58-92 537-571 (1012)
160 PRK06184 hypothetical protein; 99.0 1.5E-08 3.3E-13 113.4 16.9 61 195-258 109-169 (502)
161 PRK08243 4-hydroxybenzoate 3-m 98.9 2.3E-08 5E-13 108.4 17.6 62 195-258 103-164 (392)
162 PTZ00383 malate:quinone oxidor 98.9 3.1E-08 6.7E-13 109.3 18.6 59 194-258 210-274 (497)
163 PRK12769 putative oxidoreducta 98.9 2.1E-07 4.6E-12 107.3 25.3 36 58-93 327-362 (654)
164 PRK12810 gltD glutamate syntha 98.9 2.4E-07 5.3E-12 102.6 24.7 37 57-93 142-178 (471)
165 KOG1298|consensus 98.9 8.1E-09 1.7E-13 104.8 11.0 167 55-261 42-212 (509)
166 PRK11445 putative oxidoreducta 98.9 3.2E-08 7E-13 105.5 16.2 60 195-258 99-158 (351)
167 PRK08773 2-octaprenyl-3-methyl 98.9 2.4E-08 5.3E-13 108.2 15.5 57 195-257 113-169 (392)
168 PRK08244 hypothetical protein; 98.9 3.1E-08 6.7E-13 110.7 16.5 61 195-258 100-160 (493)
169 TIGR01988 Ubi-OHases Ubiquinon 98.9 3.4E-08 7.3E-13 106.7 16.3 58 195-258 106-164 (385)
170 PRK07333 2-octaprenyl-6-methox 98.9 2.5E-08 5.4E-13 108.5 14.7 58 195-258 111-168 (403)
171 PRK07190 hypothetical protein; 98.9 2.8E-08 6.1E-13 110.2 15.2 57 195-257 109-165 (487)
172 PRK06834 hypothetical protein; 98.9 3.1E-08 6.7E-13 110.0 15.4 58 195-258 100-157 (488)
173 PRK11749 dihydropyrimidine deh 98.9 1.6E-08 3.5E-13 111.7 13.0 35 57-91 139-173 (457)
174 TIGR03378 glycerol3P_GlpB glyc 98.9 1.6E-07 3.4E-12 100.3 19.8 61 193-256 261-321 (419)
175 PRK09126 hypothetical protein; 98.9 4E-08 8.6E-13 106.5 15.6 58 195-258 110-168 (392)
176 PRK06183 mhpA 3-(3-hydroxyphen 98.9 5.9E-08 1.3E-12 109.5 17.2 62 195-258 113-175 (538)
177 PRK13977 myosin-cross-reactive 98.9 8.2E-08 1.8E-12 105.6 17.6 65 195-259 226-295 (576)
178 PRK13512 coenzyme A disulfide 98.8 6.4E-09 1.4E-13 114.2 9.0 50 206-258 69-118 (438)
179 PRK06847 hypothetical protein; 98.8 8.7E-08 1.9E-12 103.2 17.6 60 194-259 106-165 (375)
180 PRK07608 ubiquinone biosynthes 98.8 7.7E-08 1.7E-12 104.1 17.1 57 195-258 111-168 (388)
181 PLN02172 flavin-containing mon 98.8 6.1E-08 1.3E-12 106.4 16.2 64 193-258 109-174 (461)
182 COG0445 GidA Flavin-dependent 98.8 3.9E-09 8.5E-14 112.2 6.5 151 58-257 4-158 (621)
183 TIGR01317 GOGAT_sm_gam glutama 98.8 8.5E-08 1.9E-12 106.4 17.5 57 409-474 424-480 (485)
184 PRK02106 choline dehydrogenase 98.8 8.3E-08 1.8E-12 108.8 17.7 51 207-258 213-263 (560)
185 PRK12778 putative bifunctional 98.8 3.6E-08 7.9E-13 115.4 14.9 35 57-91 430-464 (752)
186 PRK06617 2-octaprenyl-6-methox 98.8 8.8E-08 1.9E-12 103.1 16.3 58 195-259 104-162 (374)
187 PRK08020 ubiF 2-octaprenyl-3-m 98.8 8E-08 1.7E-12 104.1 16.1 58 195-258 112-170 (391)
188 PRK08013 oxidoreductase; Provi 98.8 8.3E-08 1.8E-12 104.3 16.1 58 195-258 111-169 (400)
189 PRK05714 2-octaprenyl-3-methyl 98.8 5E-08 1.1E-12 106.2 14.4 58 195-258 112-169 (405)
190 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 8.8E-08 1.9E-12 103.6 15.7 63 195-259 103-165 (390)
191 PRK05335 tRNA (uracil-5-)-meth 98.8 2.8E-07 6.2E-12 98.1 18.6 35 59-93 3-37 (436)
192 PRK08849 2-octaprenyl-3-methyl 98.8 1.1E-07 2.4E-12 102.7 16.0 57 196-258 111-168 (384)
193 PRK09754 phenylpropionate diox 98.8 1.1E-08 2.3E-13 111.1 7.6 33 58-90 3-37 (396)
194 PRK12814 putative NADPH-depend 98.8 6.8E-08 1.5E-12 111.0 14.5 35 58-92 193-227 (652)
195 PRK09897 hypothetical protein; 98.8 2.1E-07 4.6E-12 103.3 17.8 160 59-256 2-165 (534)
196 TIGR01984 UbiH 2-polyprenyl-6- 98.8 1.4E-07 3E-12 101.9 15.5 58 195-258 105-163 (382)
197 PRK08163 salicylate hydroxylas 98.8 1.4E-07 2.9E-12 102.5 15.5 59 195-259 109-168 (396)
198 TIGR01810 betA choline dehydro 98.7 3.2E-07 6.9E-12 103.4 18.4 55 203-258 201-256 (532)
199 PRK07045 putative monooxygenas 98.7 2.1E-07 4.6E-12 100.7 15.9 59 195-258 106-166 (388)
200 PRK07494 2-octaprenyl-6-methox 98.7 2.2E-07 4.7E-12 100.6 15.9 57 195-258 111-168 (388)
201 PRK13984 putative oxidoreducta 98.7 1.4E-06 2.9E-11 99.9 23.3 38 57-94 282-319 (604)
202 PRK07538 hypothetical protein; 98.7 2.2E-07 4.7E-12 101.4 16.0 63 195-258 102-166 (413)
203 PF13738 Pyr_redox_3: Pyridine 98.7 5.9E-08 1.3E-12 94.8 10.2 61 193-259 80-140 (203)
204 PRK08132 FAD-dependent oxidore 98.7 4.9E-07 1.1E-11 102.3 18.2 61 195-258 125-186 (547)
205 PLN02785 Protein HOTHEAD 98.7 8.9E-08 1.9E-12 108.0 12.0 56 202-258 227-291 (587)
206 KOG2820|consensus 98.7 1.8E-07 3.9E-12 93.9 12.7 64 195-263 153-218 (399)
207 TIGR02730 carot_isom carotene 98.7 7.7E-07 1.7E-11 99.4 19.3 58 195-257 229-286 (493)
208 TIGR01790 carotene-cycl lycope 98.7 1.5E-07 3.3E-12 101.8 13.3 57 195-257 85-141 (388)
209 TIGR01316 gltA glutamate synth 98.7 8.6E-07 1.9E-11 97.6 19.1 32 59-90 273-304 (449)
210 PTZ00318 NADH dehydrogenase-li 98.7 2.5E-07 5.5E-12 101.1 14.5 33 58-90 10-42 (424)
211 PRK08850 2-octaprenyl-6-methox 98.7 3.1E-07 6.7E-12 100.0 15.2 58 195-258 111-169 (405)
212 PF05834 Lycopene_cycl: Lycope 98.7 1.9E-06 4.1E-11 92.6 20.7 55 194-255 86-140 (374)
213 PRK14989 nitrite reductase sub 98.7 1.1E-07 2.3E-12 111.6 11.6 33 59-91 4-40 (847)
214 PRK12770 putative glutamate sy 98.7 2E-07 4.4E-12 99.4 12.6 36 57-92 17-52 (352)
215 PRK05732 2-octaprenyl-6-methox 98.6 3.8E-07 8.2E-12 98.9 14.9 57 196-258 113-170 (395)
216 PRK07236 hypothetical protein; 98.6 6E-07 1.3E-11 97.1 16.1 34 58-91 6-39 (386)
217 COG1233 Phytoene dehydrogenase 98.6 7.1E-07 1.5E-11 99.1 16.9 56 195-255 224-279 (487)
218 KOG2403|consensus 98.6 3.7E-07 8E-12 97.0 13.6 257 213-482 228-484 (642)
219 PRK06996 hypothetical protein; 98.6 4.3E-07 9.3E-12 98.6 14.6 58 195-256 115-173 (398)
220 TIGR01989 COQ6 Ubiquinone bios 98.6 5.1E-07 1.1E-11 99.3 15.3 62 195-259 117-185 (437)
221 PRK07588 hypothetical protein; 98.6 7.3E-07 1.6E-11 96.6 15.9 58 195-259 103-160 (391)
222 PRK04965 NADH:flavorubredoxin 98.6 9.2E-08 2E-12 103.1 8.3 32 59-90 3-36 (377)
223 KOG1336|consensus 98.6 7.3E-08 1.6E-12 101.4 6.9 71 389-469 310-381 (478)
224 TIGR02462 pyranose_ox pyranose 98.6 7.5E-07 1.6E-11 98.8 15.3 52 207-258 226-280 (544)
225 TIGR03169 Nterm_to_SelD pyridi 98.6 8.5E-07 1.8E-11 95.1 15.5 31 60-90 1-34 (364)
226 PTZ00367 squalene epoxidase; P 98.6 1.2E-06 2.6E-11 98.4 16.2 35 57-91 32-66 (567)
227 PRK12771 putative glutamate sy 98.6 4.7E-07 1E-11 102.7 13.1 35 58-92 137-171 (564)
228 PRK12809 putative oxidoreducta 98.6 1.3E-06 2.8E-11 100.4 16.5 36 58-93 310-345 (639)
229 TIGR02733 desat_CrtD C-3',4' d 98.5 4.3E-06 9.3E-11 93.5 20.2 61 195-255 232-292 (492)
230 PRK08294 phenol 2-monooxygenas 98.5 1.5E-06 3.2E-11 99.5 15.9 65 195-259 141-212 (634)
231 PRK07208 hypothetical protein; 98.5 3.3E-06 7.2E-11 94.1 18.4 62 195-256 218-279 (479)
232 KOG2853|consensus 98.5 1.3E-06 2.8E-11 87.6 12.8 57 53-109 81-142 (509)
233 PRK06475 salicylate hydroxylas 98.5 2.3E-06 5E-11 93.0 16.1 62 195-259 107-169 (400)
234 TIGR02374 nitri_red_nirB nitri 98.5 4.5E-07 9.8E-12 106.3 11.0 45 205-257 64-108 (785)
235 PRK05868 hypothetical protein; 98.5 2.5E-06 5.4E-11 91.7 15.9 33 60-92 3-35 (372)
236 PF06039 Mqo: Malate:quinone o 98.5 2.5E-06 5.3E-11 90.3 14.6 64 195-258 181-245 (488)
237 PRK06753 hypothetical protein; 98.5 2.8E-06 6.1E-11 91.4 15.4 33 60-92 2-34 (373)
238 KOG2311|consensus 98.4 8.6E-07 1.9E-11 92.5 9.8 35 57-91 27-61 (679)
239 KOG2844|consensus 98.4 2.4E-06 5.2E-11 92.7 13.2 58 195-258 187-244 (856)
240 TIGR02734 crtI_fam phytoene de 98.4 7E-06 1.5E-10 92.0 17.1 56 195-255 219-274 (502)
241 PLN02927 antheraxanthin epoxid 98.4 9.1E-06 2E-10 92.1 17.8 36 56-91 79-114 (668)
242 COG2072 TrkA Predicted flavopr 98.4 5.6E-06 1.2E-10 90.7 15.2 38 56-93 6-44 (443)
243 PF04820 Trp_halogenase: Trypt 98.3 5.1E-06 1.1E-10 91.3 13.2 57 195-257 154-211 (454)
244 KOG2960|consensus 98.3 1.8E-06 3.9E-11 81.0 7.8 139 58-254 76-231 (328)
245 PTZ00363 rab-GDP dissociation 98.3 1.3E-05 2.8E-10 87.4 15.7 55 195-254 232-287 (443)
246 TIGR03377 glycerol3P_GlpA glyc 98.3 8E-06 1.7E-10 91.8 14.2 64 194-257 127-190 (516)
247 PRK07233 hypothetical protein; 98.3 9.9E-06 2.1E-10 88.9 14.5 55 195-255 198-252 (434)
248 COG2303 BetA Choline dehydroge 98.3 7.9E-06 1.7E-10 91.8 13.8 54 205-258 213-267 (542)
249 TIGR03219 salicylate_mono sali 98.3 9.9E-06 2.2E-10 88.5 14.1 56 195-258 105-160 (414)
250 TIGR02731 phytoene_desat phyto 98.3 3.3E-05 7.1E-10 85.5 17.9 61 195-255 213-274 (453)
251 PF13454 NAD_binding_9: FAD-NA 98.2 1.4E-05 3.1E-10 74.5 11.4 31 62-92 1-36 (156)
252 TIGR01318 gltD_gamma_fam gluta 98.1 0.00011 2.4E-09 81.4 19.1 32 59-90 283-315 (467)
253 KOG2852|consensus 98.1 1.4E-05 3.1E-10 78.6 10.2 176 59-262 11-213 (380)
254 PF13450 NAD_binding_8: NAD(P) 98.1 3.4E-06 7.4E-11 66.6 4.4 34 63-96 1-34 (68)
255 PRK09564 coenzyme A disulfide 98.1 1.9E-05 4.1E-10 87.1 11.7 52 203-257 64-115 (444)
256 KOG1399|consensus 98.1 3.4E-05 7.3E-10 83.6 13.0 144 58-256 6-152 (448)
257 COG1252 Ndh NADH dehydrogenase 98.1 0.00025 5.4E-09 75.5 18.5 63 409-474 271-333 (405)
258 KOG2614|consensus 98.1 4.9E-05 1.1E-09 79.2 12.8 39 58-96 2-40 (420)
259 TIGR02732 zeta_caro_desat caro 98.0 0.00011 2.4E-09 81.5 16.5 61 194-256 218-283 (474)
260 PLN02612 phytoene desaturase 98.0 0.00017 3.8E-09 81.6 18.3 56 195-255 308-364 (567)
261 TIGR01789 lycopene_cycl lycope 98.0 5E-05 1.1E-09 81.4 12.5 34 60-93 1-36 (370)
262 KOG1238|consensus 98.0 0.00019 4E-09 79.2 16.7 50 208-258 267-319 (623)
263 PRK08255 salicylyl-CoA 5-hydro 98.0 2.4E-05 5.3E-10 91.7 10.3 33 60-92 2-36 (765)
264 PF00743 FMO-like: Flavin-bind 98.0 7E-05 1.5E-09 83.7 13.4 70 193-262 82-155 (531)
265 PF13434 K_oxygenase: L-lysine 97.9 4.2E-05 9.2E-10 80.8 9.7 61 196-257 96-159 (341)
266 PF00070 Pyr_redox: Pyridine n 97.9 0.00022 4.7E-09 58.3 11.7 31 61-91 2-32 (80)
267 KOG4254|consensus 97.9 7.8E-05 1.7E-09 78.0 10.9 56 196-256 265-320 (561)
268 PLN02487 zeta-carotene desatur 97.9 0.00028 6.1E-09 79.3 16.0 63 192-256 292-359 (569)
269 TIGR01316 gltA glutamate synth 97.9 3E-05 6.5E-10 85.5 7.9 35 57-91 132-166 (449)
270 TIGR02352 thiamin_ThiO glycine 97.8 0.00025 5.4E-09 74.9 13.4 61 194-260 136-196 (337)
271 KOG2665|consensus 97.8 0.00013 2.7E-09 73.0 9.4 178 57-257 47-257 (453)
272 KOG0399|consensus 97.7 0.00018 3.8E-09 82.3 10.6 35 58-92 1785-1819(2142)
273 TIGR01318 gltD_gamma_fam gluta 97.7 6.4E-05 1.4E-09 83.2 7.3 36 57-92 140-175 (467)
274 TIGR03197 MnmC_Cterm tRNA U-34 97.7 0.00072 1.6E-08 73.0 15.0 59 194-259 134-192 (381)
275 TIGR00031 UDP-GALP_mutase UDP- 97.6 5.1E-05 1.1E-09 80.8 5.2 37 59-95 2-38 (377)
276 COG3380 Predicted NAD/FAD-depe 97.6 5.6E-05 1.2E-09 74.1 4.9 35 59-93 2-36 (331)
277 COG1148 HdrA Heterodisulfide r 97.6 5.2E-05 1.1E-09 79.9 4.9 40 56-95 122-161 (622)
278 PRK05976 dihydrolipoamide dehy 97.6 0.00063 1.4E-08 75.7 13.9 32 59-90 181-212 (472)
279 TIGR01350 lipoamide_DH dihydro 97.6 0.00065 1.4E-08 75.3 14.0 32 59-90 171-202 (461)
280 COG1251 NirB NAD(P)H-nitrite r 97.6 0.00025 5.4E-09 78.9 9.1 48 204-259 68-115 (793)
281 KOG0029|consensus 97.5 9.6E-05 2.1E-09 81.6 5.2 40 56-95 13-52 (501)
282 PLN02576 protoporphyrinogen ox 97.5 0.0001 2.2E-09 82.6 5.4 39 57-95 11-50 (496)
283 PRK07818 dihydrolipoamide dehy 97.5 0.0015 3.3E-08 72.5 14.6 54 199-254 217-270 (466)
284 PTZ00188 adrenodoxin reductase 97.5 0.00018 3.9E-09 78.2 6.9 35 59-93 40-75 (506)
285 PRK06115 dihydrolipoamide dehy 97.5 0.0017 3.8E-08 71.9 14.7 32 59-90 175-206 (466)
286 PRK06416 dihydrolipoamide dehy 97.5 0.0015 3.3E-08 72.4 14.2 32 59-90 173-204 (462)
287 PRK06327 dihydrolipoamide dehy 97.4 0.002 4.3E-08 71.7 14.5 55 199-255 228-282 (475)
288 PRK06912 acoL dihydrolipoamide 97.4 0.0017 3.6E-08 71.9 13.6 32 59-90 171-202 (458)
289 PRK11883 protoporphyrinogen ox 97.4 0.00014 3.1E-09 80.3 5.1 36 60-95 2-39 (451)
290 PLN02268 probable polyamine ox 97.4 0.00015 3.2E-09 79.9 5.1 38 59-96 1-38 (435)
291 COG0562 Glf UDP-galactopyranos 97.4 0.00018 4E-09 72.3 5.1 41 59-99 2-42 (374)
292 TIGR00562 proto_IX_ox protopor 97.4 0.00018 3.8E-09 79.9 5.2 37 59-95 3-43 (462)
293 TIGR03140 AhpF alkyl hydropero 97.4 0.0017 3.7E-08 73.0 13.0 47 208-254 401-447 (515)
294 PRK06370 mercuric reductase; V 97.3 0.0027 5.8E-08 70.5 13.9 32 59-90 172-203 (463)
295 TIGR01292 TRX_reduct thioredox 97.3 0.0015 3.3E-08 67.6 11.3 48 206-254 187-235 (300)
296 TIGR02053 MerA mercuric reduct 97.3 0.0025 5.5E-08 70.7 13.5 32 59-90 167-198 (463)
297 PRK04965 NADH:flavorubredoxin 97.3 0.0028 6E-08 68.3 12.8 32 59-90 142-173 (377)
298 PRK15317 alkyl hydroperoxide r 97.3 0.0021 4.6E-08 72.2 12.3 47 208-254 400-446 (517)
299 PRK10262 thioredoxin reductase 97.2 0.0036 7.7E-08 65.9 13.0 53 202-254 192-245 (321)
300 COG4529 Uncharacterized protei 97.2 0.0022 4.9E-08 68.6 11.3 37 59-95 2-41 (474)
301 PRK09754 phenylpropionate diox 97.2 0.0028 6E-08 68.8 12.5 32 59-90 145-176 (396)
302 COG1231 Monoamine oxidase [Ami 97.2 0.00032 7E-09 74.3 4.9 42 56-97 5-46 (450)
303 PLN02568 polyamine oxidase 97.2 0.00036 7.8E-09 78.3 5.4 39 57-95 4-47 (539)
304 COG3349 Uncharacterized conser 97.2 0.00036 7.9E-09 75.2 4.9 36 60-95 2-37 (485)
305 PLN02852 ferredoxin-NADP+ redu 97.2 0.00049 1.1E-08 75.9 6.1 36 58-93 26-63 (491)
306 PRK12831 putative oxidoreducta 97.2 0.004 8.7E-08 68.9 13.3 32 59-90 282-313 (464)
307 PRK07251 pyridine nucleotide-d 97.2 0.0024 5.2E-08 70.3 11.5 32 59-90 158-189 (438)
308 COG1249 Lpd Pyruvate/2-oxoglut 97.2 0.0034 7.3E-08 68.5 12.2 95 60-254 175-269 (454)
309 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.00041 8.8E-09 74.8 4.8 34 59-92 1-34 (433)
310 PRK06116 glutathione reductase 97.2 0.0044 9.6E-08 68.4 13.2 32 59-90 168-199 (450)
311 PRK05249 soluble pyridine nucl 97.2 0.0055 1.2E-07 68.0 13.9 32 59-90 176-207 (461)
312 TIGR01421 gluta_reduc_1 glutat 97.1 0.0057 1.2E-07 67.5 13.7 32 59-90 167-198 (450)
313 PRK09564 coenzyme A disulfide 97.1 0.0048 1E-07 68.1 12.4 32 59-90 150-181 (444)
314 PRK06467 dihydrolipoamide dehy 97.0 0.0073 1.6E-07 67.1 13.6 32 59-90 175-206 (471)
315 PRK11749 dihydropyrimidine deh 97.0 0.006 1.3E-07 67.5 12.9 32 59-90 274-306 (457)
316 PRK12416 protoporphyrinogen ox 97.0 0.00058 1.3E-08 75.7 4.9 52 195-254 226-277 (463)
317 COG1232 HemY Protoporphyrinoge 97.0 0.00065 1.4E-08 73.4 4.9 35 60-94 2-38 (444)
318 PLN02676 polyamine oxidase 97.0 0.00071 1.5E-08 75.3 5.1 39 58-96 26-65 (487)
319 COG0446 HcaD Uncharacterized N 97.0 0.0047 1E-07 67.0 11.5 33 59-91 137-169 (415)
320 PF06100 Strep_67kDa_ant: Stre 97.0 0.027 5.8E-07 61.0 16.2 62 195-257 207-274 (500)
321 TIGR03385 CoA_CoA_reduc CoA-di 97.0 0.0073 1.6E-07 66.2 12.6 32 59-90 138-169 (427)
322 PRK07845 flavoprotein disulfid 96.9 0.011 2.3E-07 65.7 13.5 31 60-90 179-209 (466)
323 PRK06292 dihydrolipoamide dehy 96.9 0.01 2.2E-07 65.8 13.3 32 59-90 170-201 (460)
324 TIGR01424 gluta_reduc_2 glutat 96.9 0.011 2.5E-07 65.1 13.5 31 60-90 168-198 (446)
325 PLN02529 lysine-specific histo 96.9 0.0012 2.5E-08 76.2 5.6 40 56-95 158-197 (738)
326 KOG2495|consensus 96.9 0.06 1.3E-06 56.8 17.4 37 54-90 51-87 (491)
327 TIGR02374 nitri_red_nirB nitri 96.9 0.0067 1.4E-07 71.6 11.9 31 60-90 142-172 (785)
328 PLN02328 lysine-specific histo 96.9 0.0014 2.9E-08 76.1 5.8 39 57-95 237-275 (808)
329 TIGR01423 trypano_reduc trypan 96.8 0.012 2.5E-07 65.6 12.9 53 197-254 233-285 (486)
330 PLN02507 glutathione reductase 96.8 0.015 3.4E-07 64.9 13.9 32 59-90 204-235 (499)
331 PRK08010 pyridine nucleotide-d 96.8 0.013 2.9E-07 64.5 13.1 31 60-90 160-190 (441)
332 PRK14694 putative mercuric red 96.8 0.013 2.8E-07 65.1 13.0 32 59-90 179-210 (468)
333 PRK14989 nitrite reductase sub 96.8 0.0093 2E-07 70.6 12.3 31 60-90 147-177 (847)
334 PF13434 K_oxygenase: L-lysine 96.8 0.0092 2E-07 63.1 11.0 143 57-254 189-338 (341)
335 PRK14727 putative mercuric red 96.8 0.016 3.4E-07 64.6 13.2 32 59-90 189-220 (479)
336 TIGR01438 TGR thioredoxin and 96.7 0.019 4.2E-07 63.9 13.2 31 60-90 182-212 (484)
337 PTZ00058 glutathione reductase 96.7 0.021 4.6E-07 64.5 13.5 32 59-90 238-269 (561)
338 PRK12770 putative glutamate sy 96.6 0.019 4E-07 61.3 12.3 31 60-90 174-205 (352)
339 PRK13748 putative mercuric red 96.6 0.017 3.7E-07 65.8 12.6 32 59-90 271-302 (561)
340 PRK06567 putative bifunctional 96.6 0.002 4.3E-08 75.4 4.8 35 57-91 382-416 (1028)
341 COG0493 GltD NADPH-dependent g 96.6 0.0033 7.3E-08 68.6 6.0 34 59-92 124-157 (457)
342 PTZ00052 thioredoxin reductase 96.6 0.024 5.2E-07 63.4 12.9 31 60-90 184-214 (499)
343 PRK07846 mycothione reductase; 96.6 0.027 5.9E-07 62.2 13.1 32 59-90 167-198 (451)
344 PRK13512 coenzyme A disulfide 96.5 0.021 4.6E-07 62.8 11.9 31 60-90 150-180 (438)
345 PRK12778 putative bifunctional 96.4 0.031 6.7E-07 65.9 13.4 32 59-90 571-603 (752)
346 PRK12779 putative bifunctional 96.4 0.037 8E-07 66.3 13.5 32 59-90 448-479 (944)
347 PLN02546 glutathione reductase 96.3 0.044 9.6E-07 61.9 13.1 32 59-90 253-284 (558)
348 PTZ00153 lipoamide dehydrogena 96.3 0.05 1.1E-06 62.5 13.4 31 60-90 314-344 (659)
349 TIGR03143 AhpF_homolog putativ 96.3 0.032 6.9E-07 63.3 11.8 32 59-90 144-175 (555)
350 TIGR03452 mycothione_red mycot 96.2 0.051 1.1E-06 60.1 13.0 32 59-90 170-201 (452)
351 PLN03000 amine oxidase 96.2 0.006 1.3E-07 71.0 5.6 39 58-96 184-222 (881)
352 PLN02976 amine oxidase 96.2 0.0058 1.2E-07 73.7 5.4 41 56-96 691-731 (1713)
353 PTZ00318 NADH dehydrogenase-li 96.1 0.046 1E-06 59.9 11.9 55 408-474 295-349 (424)
354 COG1252 Ndh NADH dehydrogenase 96.1 0.023 5E-07 60.8 9.0 52 197-257 211-262 (405)
355 KOG1335|consensus 96.1 0.038 8.2E-07 57.3 9.9 53 203-255 260-312 (506)
356 KOG1276|consensus 95.9 0.0083 1.8E-07 63.0 4.6 38 58-95 11-50 (491)
357 PRK12775 putative trifunctiona 95.9 0.075 1.6E-06 64.3 13.3 51 205-255 619-684 (1006)
358 KOG0685|consensus 95.9 0.011 2.3E-07 63.1 5.0 38 58-95 21-59 (498)
359 COG2907 Predicted NAD/FAD-bind 95.9 0.0086 1.9E-07 61.2 4.1 39 58-97 8-46 (447)
360 TIGR03385 CoA_CoA_reduc CoA-di 95.7 0.0085 1.8E-07 65.7 4.0 49 206-257 55-103 (427)
361 TIGR01372 soxA sarcosine oxida 95.5 0.096 2.1E-06 63.6 12.2 51 204-256 360-410 (985)
362 COG0492 TrxB Thioredoxin reduc 95.5 0.14 2.9E-06 53.3 11.5 48 204-254 187-235 (305)
363 PRK12814 putative NADPH-depend 95.4 0.17 3.7E-06 58.6 13.1 32 59-90 324-356 (652)
364 KOG1346|consensus 95.0 0.02 4.4E-07 59.6 3.5 44 207-258 269-312 (659)
365 COG3634 AhpF Alkyl hydroperoxi 94.9 0.17 3.7E-06 51.9 9.7 47 208-254 403-449 (520)
366 PRK12771 putative glutamate sy 94.9 0.26 5.6E-06 56.1 12.5 40 426-474 406-445 (564)
367 KOG1336|consensus 94.8 0.21 4.6E-06 53.5 10.6 53 199-256 259-312 (478)
368 TIGR03169 Nterm_to_SelD pyridi 94.8 0.26 5.7E-06 52.7 11.7 55 408-474 258-312 (364)
369 PF00996 GDI: GDP dissociation 94.7 0.035 7.7E-07 60.2 4.7 51 196-252 233-284 (438)
370 COG3486 IucD Lysine/ornithine 94.7 0.59 1.3E-05 49.3 13.4 37 56-92 3-40 (436)
371 KOG1800|consensus 94.6 0.033 7.1E-07 57.7 3.8 35 59-93 21-57 (468)
372 KOG3855|consensus 94.4 0.066 1.4E-06 56.2 5.5 34 58-91 36-73 (481)
373 TIGR03315 Se_ygfK putative sel 94.0 0.6 1.3E-05 56.0 13.3 32 59-90 667-700 (1012)
374 COG1206 Gid NAD(FAD)-utilizing 93.6 0.059 1.3E-06 54.8 3.4 34 59-92 4-37 (439)
375 PRK09853 putative selenate red 93.3 0.94 2E-05 54.3 13.1 32 59-90 669-702 (1019)
376 TIGR01317 GOGAT_sm_gam glutama 93.2 0.97 2.1E-05 50.4 12.7 32 59-90 284-316 (485)
377 PRK06567 putative bifunctional 93.1 0.22 4.8E-06 58.8 7.5 53 203-255 648-726 (1028)
378 COG3486 IucD Lysine/ornithine 92.9 1.3 2.9E-05 46.8 12.0 59 195-254 275-337 (436)
379 PLN02852 ferredoxin-NADP+ redu 92.4 0.12 2.7E-06 57.1 4.0 57 409-474 367-423 (491)
380 COG1251 NirB NAD(P)H-nitrite r 91.5 0.71 1.5E-05 52.3 8.5 51 201-257 193-243 (793)
381 PF13241 NAD_binding_7: Putati 91.0 0.18 3.9E-06 43.2 2.7 32 59-90 8-39 (103)
382 PRK04148 hypothetical protein; 91.0 0.99 2.1E-05 40.5 7.4 31 59-90 18-48 (134)
383 PF02558 ApbA: Ketopantoate re 90.4 0.4 8.7E-06 44.0 4.7 31 61-91 1-31 (151)
384 PRK02705 murD UDP-N-acetylmura 90.4 0.26 5.6E-06 54.6 4.0 32 60-91 2-33 (459)
385 KOG0404|consensus 90.1 1.6 3.4E-05 42.3 8.3 52 203-254 200-252 (322)
386 PRK01438 murD UDP-N-acetylmura 90.0 0.34 7.4E-06 54.0 4.6 31 60-90 18-48 (480)
387 TIGR01470 cysG_Nterm siroheme 89.8 0.39 8.4E-06 46.8 4.3 32 59-90 10-41 (205)
388 PF01210 NAD_Gly3P_dh_N: NAD-d 89.5 0.34 7.4E-06 45.0 3.4 30 61-90 2-31 (157)
389 KOG2755|consensus 89.0 0.29 6.3E-06 48.4 2.6 30 61-90 2-33 (334)
390 KOG2495|consensus 89.0 1.7 3.8E-05 46.2 8.4 51 199-255 277-327 (491)
391 PF13738 Pyr_redox_3: Pyridine 88.6 0.47 1E-05 45.8 3.9 34 58-91 167-200 (203)
392 PF01488 Shikimate_DH: Shikima 88.6 0.72 1.6E-05 41.7 4.8 33 58-90 12-45 (135)
393 PF01593 Amino_oxidase: Flavin 88.0 0.5 1.1E-05 51.1 4.0 47 204-256 218-264 (450)
394 PF01262 AlaDh_PNT_C: Alanine 87.9 0.74 1.6E-05 43.3 4.6 32 59-90 21-52 (168)
395 PF02737 3HCDH_N: 3-hydroxyacy 87.9 0.68 1.5E-05 44.2 4.4 30 61-90 2-31 (180)
396 KOG3923|consensus 87.5 0.57 1.2E-05 47.3 3.6 45 58-102 3-54 (342)
397 PRK06719 precorrin-2 dehydroge 87.0 0.81 1.8E-05 42.5 4.2 31 59-89 14-44 (157)
398 PRK14106 murD UDP-N-acetylmura 86.9 0.71 1.5E-05 51.0 4.5 32 59-90 6-37 (450)
399 PRK06718 precorrin-2 dehydroge 86.7 0.83 1.8E-05 44.4 4.3 32 59-90 11-42 (202)
400 TIGR00292 thiazole biosynthesi 86.6 0.73 1.6E-05 46.6 4.0 45 426-472 209-253 (254)
401 TIGR00518 alaDH alanine dehydr 86.6 0.81 1.8E-05 49.0 4.5 33 58-90 167-199 (370)
402 COG1635 THI4 Ribulose 1,5-bisp 86.3 0.59 1.3E-05 45.3 2.8 46 426-473 215-260 (262)
403 PRK09424 pntA NAD(P) transhydr 86.2 0.85 1.8E-05 50.7 4.5 33 58-90 165-197 (509)
404 KOG4716|consensus 86.2 1.6 3.4E-05 45.0 5.9 31 60-90 200-230 (503)
405 PF03721 UDPG_MGDP_dh_N: UDP-g 86.0 0.71 1.5E-05 44.2 3.4 31 60-90 2-32 (185)
406 COG0569 TrkA K+ transport syst 85.8 1 2.3E-05 44.6 4.5 32 60-91 2-33 (225)
407 COG0686 Ald Alanine dehydrogen 85.2 0.73 1.6E-05 46.9 3.0 33 58-90 168-200 (371)
408 KOG3851|consensus 85.2 0.76 1.7E-05 46.8 3.2 35 56-90 37-73 (446)
409 KOG1439|consensus 85.0 0.49 1.1E-05 49.7 1.8 40 56-95 2-41 (440)
410 PRK04176 ribulose-1,5-biphosph 84.8 0.92 2E-05 46.0 3.7 46 426-473 210-255 (257)
411 COG0446 HcaD Uncharacterized N 84.5 3.7 8.1E-05 44.2 8.6 44 207-259 65-108 (415)
412 KOG4405|consensus 84.4 0.94 2E-05 47.7 3.5 40 56-95 6-45 (547)
413 COG5044 MRS6 RAB proteins gera 83.8 1.6 3.4E-05 45.6 4.8 38 58-95 6-43 (434)
414 PRK06129 3-hydroxyacyl-CoA deh 82.9 1.5 3.2E-05 45.8 4.4 31 60-90 4-34 (308)
415 PRK05708 2-dehydropantoate 2-r 82.8 1.7 3.7E-05 45.2 4.9 32 59-90 3-34 (305)
416 PRK12548 shikimate 5-dehydroge 82.6 1.7 3.6E-05 44.9 4.6 32 59-90 127-159 (289)
417 PLN02661 Putative thiazole syn 82.1 1.4 3E-05 46.5 3.7 46 426-473 283-328 (357)
418 cd00401 AdoHcyase S-adenosyl-L 82.0 1.7 3.7E-05 47.0 4.5 32 59-90 203-234 (413)
419 PRK12549 shikimate 5-dehydroge 81.7 1.6 3.6E-05 44.8 4.1 32 59-90 128-160 (284)
420 PF02254 TrkA_N: TrkA-N domain 81.4 2.4 5.2E-05 36.8 4.6 30 61-90 1-30 (116)
421 PRK05562 precorrin-2 dehydroge 81.3 2 4.4E-05 42.3 4.4 32 59-90 26-57 (223)
422 PRK15116 sulfur acceptor prote 81.2 2.1 4.6E-05 43.4 4.6 36 57-92 29-65 (268)
423 PRK12921 2-dehydropantoate 2-r 80.9 2 4.3E-05 44.6 4.6 30 60-89 2-31 (305)
424 TIGR02354 thiF_fam2 thiamine b 80.5 2.1 4.6E-05 41.5 4.2 35 57-91 20-55 (200)
425 PRK12475 thiamine/molybdopteri 80.2 2.4 5.2E-05 44.8 4.8 37 57-93 23-60 (338)
426 PRK06522 2-dehydropantoate 2-r 80.1 2.2 4.7E-05 44.2 4.5 31 60-90 2-32 (304)
427 PRK08293 3-hydroxybutyryl-CoA 80.0 2.3 4.9E-05 43.9 4.6 31 60-90 5-35 (287)
428 PRK09260 3-hydroxybutyryl-CoA 79.6 2.4 5.3E-05 43.6 4.6 31 60-90 3-33 (288)
429 TIGR00561 pntA NAD(P) transhyd 79.5 2.3 4.9E-05 47.2 4.5 33 58-90 164-196 (511)
430 cd05311 NAD_bind_2_malic_enz N 79.5 2.5 5.4E-05 41.9 4.4 32 59-90 26-60 (226)
431 PRK12550 shikimate 5-dehydroge 79.5 2.5 5.5E-05 43.1 4.6 31 60-90 124-155 (272)
432 PRK02472 murD UDP-N-acetylmura 79.4 2 4.3E-05 47.4 4.1 31 60-90 7-37 (447)
433 PRK06249 2-dehydropantoate 2-r 78.7 3 6.5E-05 43.6 5.0 32 59-90 6-37 (313)
434 PRK07688 thiamine/molybdopteri 78.2 2.7 5.8E-05 44.5 4.4 36 57-92 23-59 (339)
435 PF01134 GIDA: Glucose inhibit 78.0 2.7 5.8E-05 45.1 4.3 38 427-474 353-390 (392)
436 TIGR02355 moeB molybdopterin s 77.0 3.8 8.3E-05 41.0 5.0 37 57-93 23-60 (240)
437 PRK07530 3-hydroxybutyryl-CoA 76.6 3.3 7.1E-05 42.8 4.6 31 60-90 6-36 (292)
438 PRK07819 3-hydroxybutyryl-CoA 76.4 3.3 7.1E-05 42.7 4.4 31 60-90 7-37 (286)
439 PRK07066 3-hydroxybutyryl-CoA 76.3 3.3 7.2E-05 43.3 4.5 31 60-90 9-39 (321)
440 PRK14027 quinate/shikimate deh 76.2 3.2 7E-05 42.6 4.3 32 59-90 128-160 (283)
441 TIGR02356 adenyl_thiF thiazole 76.1 3.7 8E-05 39.9 4.5 35 57-91 20-55 (202)
442 PLN02520 bifunctional 3-dehydr 76.0 2.9 6.3E-05 47.1 4.2 32 59-90 380-411 (529)
443 TIGR03378 glycerol3P_GlpB glyc 75.9 1.9 4E-05 46.7 2.5 33 59-91 1-33 (419)
444 PRK06035 3-hydroxyacyl-CoA deh 75.9 3.5 7.5E-05 42.6 4.5 31 60-90 5-35 (291)
445 COG1004 Ugd Predicted UDP-gluc 75.8 3.3 7.2E-05 43.8 4.2 31 60-90 2-32 (414)
446 COG1748 LYS9 Saccharopine dehy 75.8 3.4 7.4E-05 44.1 4.4 31 60-90 3-34 (389)
447 TIGR03467 HpnE squalene-associ 75.6 7.8 0.00017 41.9 7.5 56 196-256 198-253 (419)
448 PRK08306 dipicolinate synthase 75.6 3.6 7.8E-05 42.6 4.5 33 58-90 152-184 (296)
449 cd01487 E1_ThiF_like E1_ThiF_l 75.3 4.3 9.4E-05 38.4 4.6 31 61-91 2-33 (174)
450 PRK08229 2-dehydropantoate 2-r 75.1 3.7 8E-05 43.4 4.6 31 60-90 4-34 (341)
451 PF00899 ThiF: ThiF family; I 74.6 4 8.6E-05 36.7 4.0 35 58-92 2-37 (135)
452 TIGR01809 Shik-DH-AROM shikima 74.6 3.9 8.4E-05 42.1 4.4 32 59-90 126-158 (282)
453 cd01483 E1_enzyme_family Super 74.3 5 0.00011 36.4 4.6 32 61-92 2-34 (143)
454 cd01080 NAD_bind_m-THF_DH_Cycl 74.2 4.6 0.0001 38.0 4.4 34 57-90 43-77 (168)
455 PRK04308 murD UDP-N-acetylmura 74.2 3.9 8.4E-05 45.1 4.6 31 60-90 7-37 (445)
456 TIGR00936 ahcY adenosylhomocys 73.9 4.1 8.8E-05 44.0 4.5 34 58-91 195-228 (406)
457 cd01075 NAD_bind_Leu_Phe_Val_D 73.8 4.3 9.4E-05 39.4 4.3 32 59-90 29-60 (200)
458 PF13478 XdhC_C: XdhC Rossmann 73.3 3.2 7E-05 37.5 3.0 31 61-91 1-31 (136)
459 PRK00258 aroE shikimate 5-dehy 73.2 4.4 9.5E-05 41.5 4.4 32 59-90 124-156 (278)
460 PRK08328 hypothetical protein; 73.1 4.7 0.0001 40.1 4.4 34 58-91 27-61 (231)
461 TIGR00507 aroE shikimate 5-deh 72.9 4.5 9.7E-05 41.3 4.4 32 59-90 118-149 (270)
462 cd01078 NAD_bind_H4MPT_DH NADP 72.8 4.7 0.0001 38.8 4.3 32 59-90 29-61 (194)
463 PRK03369 murD UDP-N-acetylmura 72.6 4 8.7E-05 45.6 4.3 31 60-90 14-44 (488)
464 PRK05808 3-hydroxybutyryl-CoA 72.5 4.8 0.00011 41.3 4.6 31 60-90 5-35 (282)
465 KOG1346|consensus 72.5 7.4 0.00016 41.3 5.7 52 198-255 396-447 (659)
466 KOG4254|consensus 72.5 2.9 6.2E-05 44.8 2.8 39 57-95 13-51 (561)
467 COG4716 Myosin-crossreactive a 71.9 2 4.4E-05 44.7 1.5 61 195-256 227-291 (587)
468 cd05292 LDH_2 A subgroup of L- 71.5 5.2 0.00011 41.7 4.5 31 60-90 2-34 (308)
469 COG1063 Tdh Threonine dehydrog 71.3 4.9 0.00011 42.7 4.4 30 60-89 171-201 (350)
470 TIGR02853 spore_dpaA dipicolin 71.2 5.2 0.00011 41.2 4.4 33 58-90 151-183 (287)
471 PRK08223 hypothetical protein; 71.0 6 0.00013 40.5 4.7 36 57-92 26-62 (287)
472 COG1648 CysG Siroheme synthase 70.9 5.3 0.00011 39.0 4.1 32 59-90 13-44 (210)
473 PRK08644 thiamine biosynthesis 70.8 6.4 0.00014 38.6 4.7 35 57-91 27-62 (212)
474 PRK05866 short chain dehydroge 70.7 6.8 0.00015 40.4 5.2 31 60-90 42-73 (293)
475 PRK00141 murD UDP-N-acetylmura 70.5 4.6 9.9E-05 44.9 4.1 31 60-90 17-47 (473)
476 KOG2755|consensus 70.4 3.1 6.7E-05 41.4 2.3 30 406-444 296-325 (334)
477 PRK05476 S-adenosyl-L-homocyst 70.4 5.3 0.00011 43.4 4.3 33 58-90 212-244 (425)
478 TIGR01763 MalateDH_bact malate 70.3 5.7 0.00012 41.3 4.5 30 60-89 3-33 (305)
479 cd05191 NAD_bind_amino_acid_DH 70.2 7.3 0.00016 31.9 4.3 31 59-89 24-55 (86)
480 COG0169 AroE Shikimate 5-dehyd 70.0 6 0.00013 40.5 4.5 32 59-90 127-159 (283)
481 PRK14620 NAD(P)H-dependent gly 69.9 5.7 0.00012 41.7 4.5 31 60-90 2-32 (326)
482 PRK06130 3-hydroxybutyryl-CoA 69.7 6 0.00013 41.2 4.6 31 60-90 6-36 (311)
483 PRK12749 quinate/shikimate deh 69.7 6.1 0.00013 40.7 4.5 32 59-90 125-157 (288)
484 PRK05690 molybdopterin biosynt 68.9 6.2 0.00014 39.6 4.3 35 57-91 31-66 (245)
485 PRK03803 murD UDP-N-acetylmura 68.9 5.3 0.00012 44.0 4.2 33 58-90 6-38 (448)
486 PRK01710 murD UDP-N-acetylmura 68.7 5.4 0.00012 44.1 4.2 31 60-90 16-46 (458)
487 COG2072 TrkA Predicted flavopr 67.8 5.5 0.00012 43.8 4.0 33 59-91 176-208 (443)
488 TIGR03026 NDP-sugDHase nucleot 67.4 6 0.00013 43.1 4.1 31 60-90 2-32 (411)
489 PRK04690 murD UDP-N-acetylmura 67.1 5.7 0.00012 44.1 4.0 31 60-90 10-40 (468)
490 TIGR03736 PRTRC_ThiF PRTRC sys 66.9 6.5 0.00014 39.3 3.9 36 56-91 9-55 (244)
491 PLN02172 flavin-containing mon 66.5 5.6 0.00012 44.0 3.7 32 59-90 205-236 (461)
492 PRK11064 wecC UDP-N-acetyl-D-m 66.5 6.8 0.00015 42.7 4.3 31 60-90 5-35 (415)
493 PRK00094 gpsA NAD(P)H-dependen 66.4 7.6 0.00016 40.6 4.6 31 60-90 3-33 (325)
494 PLN02545 3-hydroxybutyryl-CoA 66.2 7.6 0.00017 40.1 4.5 31 60-90 6-36 (295)
495 PF01593 Amino_oxidase: Flavin 65.9 12 0.00025 40.3 6.1 29 68-96 1-29 (450)
496 cd05291 HicDH_like L-2-hydroxy 65.9 7.7 0.00017 40.4 4.4 31 60-90 2-34 (306)
497 PRK14618 NAD(P)H-dependent gly 65.7 7.6 0.00017 40.8 4.4 31 60-90 6-36 (328)
498 PRK08017 oxidoreductase; Provi 65.5 8.3 0.00018 38.5 4.5 31 60-90 4-35 (256)
499 PF00670 AdoHcyase_NAD: S-aden 65.5 7.4 0.00016 36.2 3.7 33 59-91 24-56 (162)
500 PLN02494 adenosylhomocysteinas 65.4 8.2 0.00018 42.3 4.5 33 58-90 254-286 (477)
No 1
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=100.00 E-value=2e-107 Score=916.98 Aligned_cols=591 Identities=73% Similarity=1.186 Sum_probs=524.1
Q ss_pred CCCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCC
Q psy15089 51 EYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWL 130 (661)
Q Consensus 51 ~~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l 130 (661)
.++.++.++||||||+|+|||+||++|+++|++|+||||....+|+|.+++||+++..+...+|+++.|+.|+++.+.++
T Consensus 43 ~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~ 122 (635)
T PLN00128 43 SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWL 122 (635)
T ss_pred cCcceeeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCC
Confidence 34455668999999999999999999999999999999998889999999999998876556799999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCc
Q psy15089 131 GDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDC 210 (661)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv 210 (661)
+|+++++.+++++++.++||+++|++|++..+|.+..+.+++|+..+..++..+|+++..+.+|..++..|.+++++.||
T Consensus 123 ~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv 202 (635)
T PLN00128 123 GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT 202 (635)
T ss_pred CCHHHHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999888888777889988765545556788888899999999999999999999
Q ss_pred EEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcc
Q psy15089 211 NYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEF 289 (661)
Q Consensus 211 ~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef 289 (661)
+++.++.+++|+.+ +|+|+||++.+..+|+...|.||+|||||||++++|..++++..+||||++||+++||.+.||||
T Consensus 203 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mef 282 (635)
T PLN00128 203 QFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEF 282 (635)
T ss_pred EEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcc
Confidence 99999999999987 68999999988778998899999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCC
Q psy15089 290 VQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLP 369 (661)
Q Consensus 290 ~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 369 (661)
+||||+.+++.+++++++++++|++++|.+|+|||++|+|...++.+||+++++|..++.+++|+.+..+.+|+|+++++
T Consensus 283 vqfhPt~~~~~~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~l~ 362 (635)
T PLN00128 283 VQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLP 362 (635)
T ss_pred eEEecccccCCCeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCC
Confidence 99999998888889999999999999999999999999998779999999999999999888776444456999999999
Q ss_pred hHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecC-CCCccccceeeeccccccCCCCCCc
Q psy15089 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVN-GQDKIIHGLYAAGEASCSSVHGANR 448 (661)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~-~~~T~ipGLyAaGe~a~~g~hGanr 448 (661)
++.+++++|.+++.+..+.|+|+.++|+||.|++||+||||.||.++++++.+. +++|+||||||||||+|+|+||+||
T Consensus 363 ~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanR 442 (635)
T PLN00128 363 PEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANR 442 (635)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCC
Confidence 999999999999988777899999999999999999999999999999988763 4568999999999999889999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHH
Q psy15089 449 LGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQET 528 (661)
Q Consensus 449 lgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~ 528 (661)
||||+|++|+|||++||++|++++++............+...+.+..+...+++++|.+++++||++||+++||+|++++
T Consensus 443 lggnsL~~a~vfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~ 522 (635)
T PLN00128 443 LGANSLLDIVVFGRACANRVAEIAKPGEKQKPLPKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQET 522 (635)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHhCceeEEECHHH
Confidence 99999999999999999999988643211111111122222223333333345678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCC
Q psy15089 529 LQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLE 608 (661)
Q Consensus 529 L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~ 608 (661)
|++++++|++|++++..+.+.|....+|++|.+++|++||+++|+++++|||+|+||||+|||+|||++||+
T Consensus 523 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~-------- 594 (635)
T PLN00128 523 LEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAREDFTKRDDE-------- 594 (635)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCCcc--------
Confidence 999999999999988888777777788999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 609 GQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 609 ~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||+++.++ +|+++++++||...+... .++.++|..|.|
T Consensus 595 ---------~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~ 635 (635)
T PLN00128 595 ---------NWMKHTLGYWE--EGKVRLDYRPVHMNTLDD-EVETFPPKARVY 635 (635)
T ss_pred ---------ccccEEEEEec--CCcceEEecccccccccc-cccccCCCCCCC
Confidence 99999987653 688999999998665442 355799999998
No 2
>KOG2403|consensus
Probab=100.00 E-value=5e-111 Score=867.10 Aligned_cols=614 Identities=77% Similarity=1.232 Sum_probs=580.7
Q ss_pred ccceeEeecC-CCCCccCCccccCCCCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEE
Q psy15089 28 VKQFHFTIHG-QGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINA 106 (661)
Q Consensus 28 ~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~ 106 (661)
.+++++++.. ...+...++ +.+...+..||-+|||+|.||+.+|+.+++.|.+|+++.|..+..+++..++||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA 103 (642)
T KOG2403|consen 27 VRKFHSTVDGNKRSSSTSSD---SIYAQVDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINA 103 (642)
T ss_pred ccceeeccccccccccccCC---cceeeeeeeceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhh
Confidence 5666666544 222222222 334445667999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCcccee
Q psy15089 107 ALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRC 186 (661)
Q Consensus 107 ~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~ 186 (661)
+++++.+|+|+||++|+.+.++|++|++.++.++.+++..+-+|+.+|.+|.+.++|+++++.|+|++..++++++..|+
T Consensus 104 ~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~ 183 (642)
T KOG2403|consen 104 ALGNMGNDNWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRA 183 (642)
T ss_pred hhccCCCchhhhhhhhccccccccCchhhhhHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCC
Q psy15089 187 CAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSA 266 (661)
Q Consensus 187 ~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~ 266 (661)
+...+.+|+.+...|+.+..+.+..++.+..+++++...+.+.|+++.++.+|..+.++++.+|+||||+|+.|...+++
T Consensus 184 ~~~Ad~tg~~~~~tL~~~~l~~~~~~f~~yfa~dll~~~g~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~ 263 (642)
T KOG2403|consen 184 CCVADRTGHALLHTLYGQSLRHNTSFFVEYFALDLLMSQGECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSA 263 (642)
T ss_pred EEeecccccHHHhhhHHHHhccchhhHHHHHHHHHHHhccCceEEEEEEeecccceeeeeeeeEEEEeccceEEEEeccC
Confidence 99999999999999999999888888888889999988888999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCccCCCcccccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHH
Q psy15089 267 HTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTI 346 (661)
Q Consensus 267 ~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~ 346 (661)
..+||||.+|++++|+.+.+|||+||||+++++.|++++|+++++|+.++|.+|+|||+.|.|...++++||++++.+..
T Consensus 264 ~t~TgdG~a~~~ra~~~l~d~efvqfhpt~i~g~Gcliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tm 343 (642)
T KOG2403|consen 264 HTCTGDGNAMASRAGAPLSDMEFVQFHPTGIYGAGCLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTM 343 (642)
T ss_pred eeEccCCCeEEeeccCCCcccceeeeeeecccccceeeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhcCCCCCCCCcEEEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecC-CC
Q psy15089 347 EIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVN-GQ 425 (661)
Q Consensus 347 e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~-~~ 425 (661)
++.+|+|++|..+++|+++.+++++.++.++|.+.+....+.|+|.+++|+||.|.+||.||||+++.+++++..++ ..
T Consensus 344 ei~~grg~g~~kd~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~ 423 (642)
T KOG2403|consen 344 EIREGRGVGPNKDHVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQ 423 (642)
T ss_pred hhHhhcccCCCCCccchhhccCChhhhcccCCCcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccccc
Confidence 99999999999999999999999999999999998887778999999999999999999999999999999887654 46
Q ss_pred CccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCH
Q psy15089 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITT 505 (661)
Q Consensus 426 ~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (661)
.+.|||||||||++|.++|||||||.|||++.+|||+.+|..+++.++++...+++.++..++..+++.+++..++.++.
T Consensus 424 d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~ld~lr~~~gsi~T 503 (642)
T KOG2403|consen 424 DQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVANLDKLRFADGSIRT 503 (642)
T ss_pred cccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccchHHHHHhhhcccCCccH
Confidence 78999999999999999999999999999999999999999999999998888888888889999999999999999999
Q ss_pred HHHHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccC
Q psy15089 506 ADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKES 585 (661)
Q Consensus 506 ~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ES 585 (661)
.++|..||+.||++++|+|.++.|+++..+|.+|.+++++++..|.+++||.+|++.+||+||++||..++.+|++||||
T Consensus 504 selRl~MQksMqnhaaVFR~g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkES 583 (642)
T KOG2403|consen 504 SELRLEMQKTMQKHAAVFRVGSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKES 583 (642)
T ss_pred HHHHHHHHHHHhhcceEEEechHHHHHHHHHHHHHhHHhhhccccccceechhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 586 RGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 586 RG~H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
||+|+|+|||.|+|+ ||+|||++.+|..+|+++++||||+++||++.++++|||++|+|
T Consensus 584 RGAHAReDy~~R~De-----------------hWrKHTlsy~~~~tg~Vtl~YRpVidkTLde~~~~tvPPaiRsY 642 (642)
T KOG2403|consen 584 RGAHAREDFPVRIDE-----------------HWRKHTLSYWDVGTGKVTLEYRPVIDKTLDEAECDTVPPAIRSY 642 (642)
T ss_pred ccchhhcccccchhh-----------------hhccceeeeecCCCceEEEEEeecccccCchhhcCcCCCccCCC
Confidence 999999999999999 99999999888889999999999999999999999999999999
No 3
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=100.00 E-value=9.6e-106 Score=904.14 Aligned_cols=592 Identities=75% Similarity=1.221 Sum_probs=524.8
Q ss_pred CCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCC
Q psy15089 52 YPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLG 131 (661)
Q Consensus 52 ~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~ 131 (661)
++.++.++||||||||+|||+||++|+++|++|+||||....+++|..++||+++..+..+.|+++.|+.|+++.+.+++
T Consensus 23 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~ 102 (617)
T PTZ00139 23 YPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLG 102 (617)
T ss_pred ccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCC
Confidence 34455689999999999999999999999999999999988899999999999987765567899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcE
Q psy15089 132 DQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCN 211 (661)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~ 211 (661)
|+++++.+++++++.++||+++|++|++..+|.+....++||+..+..+...+|+++..+.+|..|+..|.+++++.|++
T Consensus 103 d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~ 182 (617)
T PTZ00139 103 DQDAIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN 182 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999998888877777888876555455678999989999999999999999999999
Q ss_pred EEEeEEEEEEEE-eCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccc
Q psy15089 212 YFVEYFALDLII-ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290 (661)
Q Consensus 212 i~~~~~v~~l~~-~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~ 290 (661)
++.++.+++|+. ++|+|+||++++..+|+.+.|+||+|||||||++++|..++++..+||||++||+++||.+.||||+
T Consensus 183 i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef~ 262 (617)
T PTZ00139 183 FFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262 (617)
T ss_pred EEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCceE
Confidence 999999999998 6799999999887889989999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCCh
Q psy15089 291 QFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPP 370 (661)
Q Consensus 291 q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~ 370 (661)
||||+.+++++.+++++++++|++++|.+|+|||++|+|...++.+||++++++..++.+++|..+..+.+|+|++++++
T Consensus 263 q~~pt~~~~~~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~~~v~lD~~~~~~ 342 (617)
T PTZ00139 263 QFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLDLTHLPP 342 (617)
T ss_pred EeccccccCCCcEEEeeccCCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCCCCEEEEECCCCCH
Confidence 99999988888899999999999999999999999999987789999999999999998888765445679999999999
Q ss_pred HHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeec-CCCCccccceeeeccccccCCCCCCcc
Q psy15089 371 EDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHV-NGQDKIIHGLYAAGEASCSSVHGANRL 449 (661)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d-~~~~T~ipGLyAaGe~a~~g~hGanrl 449 (661)
+.|+++++.+++.+..+.|+|+.++++||.|++||+||||.||.++|+++.+ .+..|+||||||||||+|+|+||+|||
T Consensus 343 ~~l~~~~~~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrl 422 (617)
T PTZ00139 343 ETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRL 422 (617)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCccc
Confidence 9999999999998876679999999999999999999999999999988752 235789999999999998899999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHH
Q psy15089 450 GANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETL 529 (661)
Q Consensus 450 gg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L 529 (661)
|||+|++|+|||++||++|+++.+.....+.......+...+++..+...+++.+|.+++++||++||+++|++|++++|
T Consensus 423 ggnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L 502 (617)
T PTZ00139 423 GANSLLDIVVFGRAAANTVMEILKPGRPQPDLPKDAGEASIARLDKIRHNKGDISTAQIRKRMQRTMQKHAAVFRIGESL 502 (617)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCcccchhhhHHHHHHHHHHhcccCCcChHHHHHHHHHHHhhhceeEECHHHH
Confidence 99999999999999999999886432111222222212233334444444456789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCC
Q psy15089 530 QEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEG 609 (661)
Q Consensus 530 ~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~ 609 (661)
++++++|++|++++..+.+.|....||++|++++|++||+++|+++++|||+|+||||+|||.|||++||+
T Consensus 503 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~--------- 573 (617)
T PTZ00139 503 QEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARDDFPERDDK--------- 573 (617)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhccCcCCcCCch---------
Confidence 99999999999988888877777788999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccccceEEEEe-eCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 610 QVPKPIEEHWRKHTLTDV-DVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 610 ~~~~~~~~~w~~~~~~~~-~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||+++.+ +.++|+++++++|+..+++.. .+..++|..|.|
T Consensus 574 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 617 (617)
T PTZ00139 574 --------NWMKHTLSYIRDVKKGKVRLTYRPVITTPLDN-EMETVPPAKRVY 617 (617)
T ss_pred --------hhceEEEEEeccCCCCCceEEEecCccccccc-cccccCCCCCCC
Confidence 9999999776 445689999999997654432 355799999998
No 4
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.1e-104 Score=892.34 Aligned_cols=593 Identities=69% Similarity=1.124 Sum_probs=522.9
Q ss_pred CCCCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCC
Q psy15089 50 REYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDW 129 (661)
Q Consensus 50 ~~~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~ 129 (661)
+.++..+.++||||||||+|||+||++|++.|++|+||||....++++.+++||+++..+....|++++|+.|+++.+.+
T Consensus 4 ~~~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~ 83 (598)
T PRK09078 4 SAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDW 83 (598)
T ss_pred ccccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccC
Confidence 34444556899999999999999999999999999999999888999999999999877655679999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCC
Q psy15089 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD 209 (661)
Q Consensus 130 l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~g 209 (661)
++|+++++.+++++++.++||+++|++|++..+|.+....+++|+..++.+...+|+++..+.+|..++..|.+.+++.|
T Consensus 84 ~~d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~g 163 (598)
T PRK09078 84 LGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHN 163 (598)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999988888777778888765554445689999889999999999999999999
Q ss_pred cEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCc
Q psy15089 210 CNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLE 288 (661)
Q Consensus 210 v~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~e 288 (661)
|++++++.+++|+.++ |+|+||++.+..+|+.+.|.||+|||||||++++|..+++++.++|||++||+++||.+.|||
T Consensus 164 i~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me 243 (598)
T PRK09078 164 AEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDME 243 (598)
T ss_pred CEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCc
Confidence 9999999999999976 899999998777898889999999999999999999888989999999999999999999999
Q ss_pred ccccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCC
Q psy15089 289 FVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHL 368 (661)
Q Consensus 289 f~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~ 368 (661)
|+||||+.+.+.+.+++++++++|++++|.+|+|||++|+|...++.+||++++++..++.+++|..+..+.+|+|++++
T Consensus 244 ~~q~~pt~~~~~~~l~~e~~rg~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~ 323 (598)
T PRK09078 244 FVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKKDHIFLHLDHL 323 (598)
T ss_pred hheecccccCCCceEEeecccCCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCCCEEEEECCCC
Confidence 99999998887788889999999999999999999999999877899999999999999988877544445799999999
Q ss_pred ChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecC-CCCccccceeeeccccccCCCCCC
Q psy15089 369 PPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVN-GQDKIIHGLYAAGEASCSSVHGAN 447 (661)
Q Consensus 369 ~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~-~~~T~ipGLyAaGe~a~~g~hGan 447 (661)
+++.|++++|.+++.+..+.|+|+.++|+||.|++||+||||.||.+++|++.++ +.+|+||||||||||+|+|+||+|
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~g~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGan 403 (598)
T PRK09078 324 DPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGAN 403 (598)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeecccccccCCcCcc
Confidence 9999999999999988766799999999999999999999999999999987653 356899999999999988999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHH
Q psy15089 448 RLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527 (661)
Q Consensus 448 rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~ 527 (661)
||+||+|++|+|||++||++|+++++.....+.......+...+++..+...+++.+|.+++++||++||+++|++|+++
T Consensus 404 rlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~ 483 (598)
T PRK09078 404 RLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTGE 483 (598)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhccCCCcccchhhHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHhCCeeEEECHH
Confidence 99999999999999999999998864321112222212222223333443334456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCC
Q psy15089 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPL 607 (661)
Q Consensus 528 ~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~ 607 (661)
+|++++++|++|++++..+.+.|....||++|++++|++||+++|+++++|||+|+||||+|||.|||++||+
T Consensus 484 ~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~------- 556 (598)
T PRK09078 484 VLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAREDFPDRDDE------- 556 (598)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhccCCCCccCcc-------
Confidence 9999999999999988888777777778999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 608 EGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 608 ~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++++++ .+|++++.++|+...++.. ++..++|..|.|
T Consensus 557 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~y 598 (598)
T PRK09078 557 ----------NWMKHTLAWVD-DKGKVKLDYRPVHLYTLTD-DVQYIPPKKRVY 598 (598)
T ss_pred ----------ccccEEEEEec-CCCCceEEeccCccccccc-cccccCCcCCCC
Confidence 89999988765 4689999999997655442 345799999998
No 5
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=1.1e-102 Score=882.97 Aligned_cols=565 Identities=38% Similarity=0.611 Sum_probs=498.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC---CCCCHHHHHHHHHhccCCCCCH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM---EEDDWHWHMYDTVKGSDWLGDQ 133 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~---~~d~~~~~~~d~~~~g~~l~~~ 133 (661)
.++||||||||.|||+||++|++.|++|+||||....+|+|.+++||+++.+++. ..|+++.|+.|+++.+.++||+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~ 83 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQ 83 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCH
Confidence 5799999999999999999999999999999999999999999999998876532 4689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCcccCCCCc---------------------ccccccCCcccccCCCCccceeeeccCC
Q psy15089 134 DAIHYMTREAPKAVIELENYGMPFSRTTDGK---------------------IYQRAFGGQSLKYGKGGQAHRCCAVADR 192 (661)
Q Consensus 134 ~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~---------------------~~~~~~gg~~~~~~~g~~~~r~~~~~~~ 192 (661)
++++.+++++++.++||.++|++|.+..+|. +..+.++|+ ..+|+++..+.
T Consensus 84 ~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~--------~~~R~~~~~d~ 155 (657)
T PRK08626 84 EVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGT--------KKWRTCYTADG 155 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeecCCCccccccccccccccccccccccccccccccc--------ccceeEecCCC
Confidence 9999999999999999999999998765542 111223333 34688888889
Q ss_pred cHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCCh
Q psy15089 193 TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGD 272 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGd 272 (661)
+|+.++..|.+.+.+.||+++.++.+++|+.++|+|+|+++.+..+|+.+.|.||+|||||||++++|..+++++.+|||
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGd 235 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGI 235 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChH
Confidence 99999999999999999999999999999999999999999887789988999999999999999999999999999999
Q ss_pred HHHHHHHcCC-ccCCCcccccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhc
Q psy15089 273 GTAMISRAGL-PNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREG 351 (661)
Q Consensus 273 G~~~a~~aGa-~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g 351 (661)
|++||+++|+ .+.||||+||||+.+.+.+.+++++++++|++++|.+|+|||++|+|...++++||+++++|..++.+|
T Consensus 236 G~~mA~~aGaa~l~~mE~vqfhPt~~~~~g~l~~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vsrai~~~~~~g 315 (657)
T PRK08626 236 GAAIALETGVAPLGNMEAVQFHPTAIVPSGILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVSRRMTEHIRKG 315 (657)
T ss_pred HHHHHHHcCCccccCccceEEeccEECCCCeEEEeeccCCCEEEECCCCCCCCcccCcccccccchhHHHHHHHHHHHhc
Confidence 9999999996 799999999999998888889999999999999999999999999998789999999999999999998
Q ss_pred CCCC-CCCCcEEEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCc-cc
Q psy15089 352 RGVG-PDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDK-II 429 (661)
Q Consensus 352 ~g~~-~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T-~i 429 (661)
+|+. +....||+|+++++.+.+.++++.+.+.+..+.|+||.++++||.|+.||+||||+||.+++ | +|
T Consensus 316 ~g~~~~~~~~v~lD~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~---------t~~I 386 (657)
T PRK08626 316 KGVKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGE---------SYGL 386 (657)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCC---------Cccc
Confidence 8763 23356999999999899999999999988876899999999999999999999999999887 6 69
Q ss_pred cceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCC--CcccccchhhhHhhhhHhhhcCCCCCHHH
Q psy15089 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPI--KPFAANAGESSVANLDWVRHAKGDITTAD 507 (661)
Q Consensus 430 pGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (661)
|||||||||+|+|+||+||||||||++|+|||++||++|+++++..... ........++..+++..+...++..++.+
T Consensus 387 ~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (657)
T PRK08626 387 KGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTALVEKFVKKQQDRIDELIAGEGKENVFE 466 (657)
T ss_pred CCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHHHhhcCCCCCHHH
Confidence 9999999999889999999999999999999999999999987432111 11112222333344555554555678899
Q ss_pred HHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCC
Q psy15089 508 LRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587 (661)
Q Consensus 508 ~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG 587 (661)
++++||++||+++||+|++++|++++++|++|+++++++.+.+....+|++|++++|++|||++|+++++|||+|+||||
T Consensus 467 i~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R~ESRG 546 (657)
T PRK08626 467 IKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRG 546 (657)
T ss_pred HHHHHHHHHhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999988888887788899999999999999999999999999999999
Q ss_pred ccccccCCCCccccccCCCCCCCCCCCccccccceEEEEeeCCCC-ceEEEeecccccccCcccccccCCCCCCC
Q psy15089 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTG-KVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 588 ~H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g-~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|||+|||++||+ ||+||+++.++.+++ ++.++|+|+.++.+ .++|..|.|
T Consensus 547 ~H~R~DyP~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~p~~r~y 598 (657)
T PRK08626 547 AHAREDYPKRNDR-----------------DWLNRTLASWPEGEALEPTLEYEPLDVMKM------ELPPGFRGY 598 (657)
T ss_pred ceecCcCcccCch-----------------hhceEEEEEecCCCCccceeeeccceeecc------ccCCccCcC
Confidence 9999999999999 999999987753333 28999999876532 278899988
No 6
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.5e-102 Score=874.68 Aligned_cols=580 Identities=52% Similarity=0.843 Sum_probs=505.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.++||||||+|.|||+||++|+++|++|+||||....+|+|.+++||+++..+....|+++.|+.|+++.+.+++|++++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 46999999999999999999999999999999998888999999999988766546799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEY 216 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~ 216 (661)
+.+++++++.++||+++|++|++.++|.+....+++|+..++ +...+|+++..+.+|..|+..|.+++++.|++++.++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~-~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeccccccccccc-ccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCc
Confidence 999999999999999999999998888877777888876542 3456789998899999999999999988999999999
Q ss_pred EEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccc
Q psy15089 217 FALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295 (661)
Q Consensus 217 ~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~ 295 (661)
.+++|+.+ +|+|+||++++..+|+...|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt 244 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT 244 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceEeecC
Confidence 99999995 78999999988788998899999999999999999998889999999999999999999999999999999
Q ss_pred cccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCC-CCCcEEEeCCCCChHHHH
Q psy15089 296 GIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGP-DKDHVYLQLHHLPPEDLH 374 (661)
Q Consensus 296 ~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~-~~~~v~~d~~~~~~~~l~ 374 (661)
.+.+.+.+++++++++|++++|.+|+|||++|+|...++.+||++++++..++.+++|... ....+|+|+++++++.++
T Consensus 245 ~~~~~~~l~~e~~rg~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~~v~ld~~~l~~~~l~ 324 (588)
T PRK08958 245 GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLE 324 (588)
T ss_pred cccCCceEEeeccccCceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCCCeEEEEcccCCHHHHH
Confidence 8877788899999999999999999999999999877999999999999999988877421 123589999999999999
Q ss_pred hHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecC-CCCccccceeeeccccccCCCCCCccchhh
Q psy15089 375 QRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVN-GQDKIIHGLYAAGEASCSSVHGANRLGANS 453 (661)
Q Consensus 375 ~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~-~~~T~ipGLyAaGe~a~~g~hGanrlgg~~ 453 (661)
++++.+.+.++.+.++|+.++|+||.|++||+||||+||.+++|++.|. ..+|+||||||||||+|+|+||+|||||||
T Consensus 325 ~~~~~~~~~~~~~~~~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggns 404 (588)
T PRK08958 325 SRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNS 404 (588)
T ss_pred HHcccHHHHHHHhcCCCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhH
Confidence 9999998888776789999999999999999999999999999988763 335899999999999988999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHH
Q psy15089 454 LLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGC 533 (661)
Q Consensus 454 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al 533 (661)
|++|+|||++||++|+++++.....+.+.....+...+++..+...+++.++.+++++||++||+++||+|++++|++||
T Consensus 405 l~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al 484 (588)
T PRK08958 405 LLDLVVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKGL 484 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHhCCEEEEECHHHHHHHH
Confidence 99999999999999998874321112222222233333333333333456788999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCC
Q psy15089 534 NKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPK 613 (661)
Q Consensus 534 ~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~ 613 (661)
++|++|++++..+.+.|.+..||.++++++|++|||++|+++++|||+|+||||+|||+|||++||+
T Consensus 485 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~------------- 551 (588)
T PRK08958 485 EELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDE------------- 551 (588)
T ss_pred HHHHHHHHHHHhcccCccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCCCCCCCch-------------
Confidence 9999999999888877777788999999999999999999999999999999999999999999998
Q ss_pred CccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 614 PIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 614 ~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++... +++ ++.++|+...++. +..++|..|+|
T Consensus 552 ----~~~~~~~~~~--~~~--~~~~~~~~~~~~~---~~~~~p~~r~y 588 (588)
T PRK08958 552 ----NWLCHSLYLP--ETE--SMTRRSVNMEPKL---RPAFPPKIRTY 588 (588)
T ss_pred ----hhceEEEEec--CCC--cccccccccccce---eeeeCCCCCCC
Confidence 9999986442 234 3445555443322 34699999998
No 7
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-103 Score=811.72 Aligned_cols=498 Identities=39% Similarity=0.623 Sum_probs=442.1
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYM 139 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~ 139 (661)
||+|||+|+|||++|+.|++. .+|+||.|+....++|.|+||||++.++ ..|+++.|..||+.+|.++||++.++.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~--~~Ds~~~Hv~DTL~AG~glcD~~aV~~i 85 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALS--EDDSPELHVADTLAAGAGLCDEEAVEFI 85 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeC--CCCCHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 899999999999999999998 8999999998888999999999999997 5788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHh-CCcEEEEeEEE
Q psy15089 140 TREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLR-YDCNYFVEYFA 218 (661)
Q Consensus 140 ~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~-~gv~i~~~~~v 218 (661)
+.+++..++||.++|++|+++.+|.+....++||+. +|..+..+.||+.++..|.+++++ .+|++++++.+
T Consensus 86 v~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~--------rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a 157 (518)
T COG0029 86 VSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR--------RRILHAADATGKEIMTALLKKVRNRPNITVLEGAEA 157 (518)
T ss_pred HHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCC--------ceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchh
Confidence 999999999999999999999999999999999986 789999999999999999999987 59999999999
Q ss_pred EEEEEeCC-EEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccccc
Q psy15089 219 LDLIIENG-ECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGI 297 (661)
Q Consensus 219 ~~l~~~~g-~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~ 297 (661)
.+|+.+++ .++|+.+.+. +++...|.|+.|||||||+|.+|..+|||..++|||++||+++||.+.||||+|||||.+
T Consensus 158 ~~li~~~~~~~~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l 236 (518)
T COG0029 158 LDLIIEDGIGVAGVLVLNR-NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTAL 236 (518)
T ss_pred hhhhhcCCceEeEEEEecC-CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeecccee
Confidence 99999998 5559999863 336788999999999999999999999999999999999999999999999999999998
Q ss_pred cCC---CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHHHH
Q psy15089 298 YGA---GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLH 374 (661)
Q Consensus 298 ~~~---g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~ 374 (661)
+.+ .+|++|++||+|++|+|.+|+|||..|+|.. ||+|||+|+|+|+.|+.++.. + ||+|+++++.+.++
T Consensus 237 ~~~~~~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~~-ELAPRDVVARAI~~e~~~~g~-----~-V~LD~s~~~~~~~~ 309 (518)
T COG0029 237 YIPQRRAFLISEAVRGEGAILVNEDGERFMPDYHPRG-ELAPRDVVARAIDAEMKRGGA-----D-VFLDISHIPGDFFE 309 (518)
T ss_pred cCCCCccceeehhhhcCccEEECCCCCccccCCCCcc-ccchHHHHHHHHHHHHHhcCC-----e-EEEeccCCCchhhh
Confidence 765 3799999999999999999999999999974 999999999999999998642 2 99999999999999
Q ss_pred hHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhh
Q psy15089 375 QRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSL 454 (661)
Q Consensus 375 ~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l 454 (661)
++||.++..|+. .|+||.++||||.|++||+||||.||.+|| |+||||||||||+|+|+||||||++|||
T Consensus 310 ~rFP~I~~~c~~-~GiD~~r~~IPV~PaaHY~mGGI~vD~~Gr---------Tsi~gLYAiGEvA~TGlHGANRLASNSL 379 (518)
T COG0029 310 RRFPTIYAACLK-AGIDPTREPIPVVPAAHYTMGGIAVDANGR---------TSIPGLYAIGEVACTGLHGANRLASNSL 379 (518)
T ss_pred hhCcHHHHHHHH-cCCCcccCccCccchhheecccEEECCCCc---------ccCcccEEeeeecccccccchhhhhhhH
Confidence 999999999986 799999999999999999999999999997 9999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-CCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHH
Q psy15089 455 LDLVVFGRACAKTIAEENKPGA-PIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGC 533 (661)
Q Consensus 455 ~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al 533 (661)
+||+|||+.||++|+....+.. ....++... .. +....+..-+++||++||+|+||+|+.++|++++
T Consensus 380 LE~vV~g~~aA~~i~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~~ 447 (518)
T COG0029 380 LECLVFGKRAAEDIAGRLAPAPREAPTLPVRD---DY---------EENVLLAHDRHELRRLMWRYVGIVRTAKGLERAI 447 (518)
T ss_pred HHHHHHHHHHHHHhhcccccCccCCCCCCccc---cc---------ccccccccCHHHHHHHHHhhcceEechHHHHHHH
Confidence 9999999999999987653221 111111100 00 0001111235789999999999999999999999
Q ss_pred HHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCC
Q psy15089 534 NKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPK 613 (661)
Q Consensus 534 ~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~ 613 (661)
.+|+.++.+.... . . .+. +-+|++++|++|+.|||+|+||||+|||.|||.+.++
T Consensus 448 ~~l~~~~~~~~~~-~-~------~~~----~~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~~------------- 502 (518)
T COG0029 448 RRLEPLQQENDEY-A-N------FRV----SNRNLALVALLIARAALLRTESRGAHFRLDYPDTLPE------------- 502 (518)
T ss_pred HHHHhhhhhhhhc-c-c------ccc----cccCHHHHHHHHHHHHHhccccccceecccCCCcCcc-------------
Confidence 9999998775433 1 1 111 1199999999999999999999999999999999987
Q ss_pred CccccccceEEEEee
Q psy15089 614 PIEEHWRKHTLTDVD 628 (661)
Q Consensus 614 ~~~~~w~~~~~~~~~ 628 (661)
|..+++.+.+
T Consensus 503 -----~~~~~~~~~~ 512 (518)
T COG0029 503 -----AQRRILVTLN 512 (518)
T ss_pred -----ccCceEEecc
Confidence 8777776653
No 8
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.7e-101 Score=861.73 Aligned_cols=559 Identities=41% Similarity=0.654 Sum_probs=492.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC--CCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN--MEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~--~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.++||||||+|.|||+||++|++.|++|+||||....++++.+++||+++.+.. ...|+++.|+.|+++.+.+++|++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 569999999999999999999999999999999988889999999999865432 246889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
+++.+++++++.++||+++|++|++.++|.+....++||++ +|+++..+.+|..++..|.+.+++.||++++
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~ 155 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTY--------PRTRFVGDKTGMALLHTLFERTSGLNVDFYN 155 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccC--------CeeEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999999999999999999999998888766666777764 5777777888999999999999888999999
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccccc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p 294 (661)
++.+++|+.++|+|+||++.+..+|+.+.|+||+|||||||++.+|..+++++.+||||+.||+++||.+.+|||+||||
T Consensus 156 ~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~p 235 (566)
T PRK06452 156 EWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHP 235 (566)
T ss_pred CcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEee
Confidence 99999999999999999998866788888999999999999999988888999999999999999999999999999999
Q ss_pred ccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHHHH
Q psy15089 295 TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLH 374 (661)
Q Consensus 295 ~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~ 374 (661)
+.+++.+.+++++++++|++++|.+|+|||++|+|...++.+||+++++|..++.+|+|. ....+|+|+++++++.+.
T Consensus 236 t~~~~~~~l~~e~~rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~--~~~~v~lD~~~~~~~~~~ 313 (566)
T PRK06452 236 TALYPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGF--PGGYVGLDLTHLGEEYIK 313 (566)
T ss_pred eEECCCCeEEEEeeecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCC--CCCeEEEEcccCCHHHHH
Confidence 988877888899999999999999999999999998778999999999999999988874 234699999999999999
Q ss_pred hHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCcc-ccceeeeccccccCCCCCCccchhh
Q psy15089 375 QRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKI-IHGLYAAGEASCSSVHGANRLGANS 453 (661)
Q Consensus 375 ~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~-ipGLyAaGe~a~~g~hGanrlgg~~ 453 (661)
++|+.+.+.+..+.|+|+.+++|||.|++||+||||+||.+++ |+ ||||||||||+|+|+||+|||||||
T Consensus 314 ~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~---------t~~IpGLyAaGE~a~~g~hGanrlggns 384 (566)
T PRK06452 314 ERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGR---------NPDIVGLFSAGEAACVSVHGANRLGSNS 384 (566)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeeeecccCEecCCeEECCCCC---------cCCcCCeEecccccccCCCCcccccchH
Confidence 9999888877766799999999999999999999999999886 75 9999999999888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCccc-ccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHH
Q psy15089 454 LLDLVVFGRACAKTIAEENKPGAPIKPFA-ANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEG 532 (661)
Q Consensus 454 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~a 532 (661)
|++|+|||++||++|+++++.....+... ....+...+++..+...+++.++.+++++||++||+++||+|++++|++|
T Consensus 385 l~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a 464 (566)
T PRK06452 385 LLDTLVFGQVTGRTVVQFLKSNPGNPTSNYEKEAEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLLNA 464 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 99999999999999999874321111111 11111111212222333455678899999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCC
Q psy15089 533 CNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVP 612 (661)
Q Consensus 533 l~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~ 612 (661)
+++|++|++++.++.+.|.+..||++|+.++|++||+++|+++++|||+|+||||+|||.|||++||+
T Consensus 465 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~------------ 532 (566)
T PRK06452 465 MSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDN------------ 532 (566)
T ss_pred HHHHHHHHHHHHhhccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCch------------
Confidence 99999999988888777777788999999999999999999999999999999999999999999998
Q ss_pred CCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 613 KPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 613 ~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++++++ +|++.+.++|+.+ ..++|..|.|
T Consensus 533 -----~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~ 566 (566)
T PRK06452 533 -----NWLKHTIAYLR--GNTVEVTFKPVKI--------TRWKPEPRVY 566 (566)
T ss_pred -----hhccEEEEEec--CCCceeeecCccc--------cccCCCCCCC
Confidence 99999998764 5778999999864 3589999998
No 9
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.8e-100 Score=859.99 Aligned_cols=574 Identities=50% Similarity=0.811 Sum_probs=504.6
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.++||||||+|+|||+||++|++. ++|+||||....+++|.+++||+++..+..+.|++++|+.|+++.+.+++|++++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 569999999999999999999987 8999999998888889999999998776556789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEY 216 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~ 216 (661)
+.+++++++.++||+++|++|++..+|.+....++||+..+. ....+|.++..+.+|..++..|.+.+++.||+++.++
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~-~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~ 161 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHG-KAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEF 161 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeeccccccccccc-CCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence 999999999999999999999998888887778888876422 2344677777888999999999999999999999999
Q ss_pred EEEEEEEeC----CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccc
Q psy15089 217 FALDLIIEN----GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292 (661)
Q Consensus 217 ~v~~l~~~~----g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~ 292 (661)
.+++|+.++ |+|+|+++++..+|+.+.|.||+|||||||++++|..+++++.++|||+.||+++||.+.||||+||
T Consensus 162 ~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 241 (583)
T PRK08205 162 YVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQF 241 (583)
T ss_pred EEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccceEE
Confidence 999999876 8999999987778888889999999999999999988889999999999999999999999999999
Q ss_pred ccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHH
Q psy15089 293 HPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPED 372 (661)
Q Consensus 293 ~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~ 372 (661)
||+.+...+.+++++++++|++++|.+|+|||++|+|...++.+|+++++++..++.+++|+.+..+.+|+|+++++++.
T Consensus 242 ~Pt~~~~~~~l~~e~~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~ 321 (583)
T PRK08205 242 HPTGLAGLGILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTHLGEEV 321 (583)
T ss_pred ecceecCCceEeeecccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCCCEEEEecccCChHH
Confidence 99988777888999999999999999999999999998789999999999999999888775444457999999999999
Q ss_pred HHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchh
Q psy15089 373 LHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGAN 452 (661)
Q Consensus 373 l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~ 452 (661)
+++++|.+.+.++.+.|+||.++++|+.|++||+||||+||.+++|++.+ .|+||||||||||+|+|+||+||||||
T Consensus 322 l~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~~---~t~IpGLyAaGE~a~~g~hGanrlggn 398 (583)
T PRK08205 322 LEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRDN---TTVVPGLYAAGECACVSVHGANRLGTN 398 (583)
T ss_pred HHHHcchHHHHHHHHcCCCcCCCceEEEeeeeEECCCeeECCCceEecCC---CCCcCCeeeccccccCCCCCCcCCchh
Confidence 99999999888877689999999999999999999999999999987765 799999999999998899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHH
Q psy15089 453 SLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEG 532 (661)
Q Consensus 453 ~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~a 532 (661)
+|++|+|||++||++|+++++... ...+.....+...+.+..+....+..++.+++++||++||+++|++|++++|++|
T Consensus 399 sl~~~~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~a 477 (583)
T PRK08205 399 SLLDINVFGRRAGIAAAEYARGAD-FVDLPENPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQA 477 (583)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccC-ccCCchhhHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCEEECHHHHHHH
Confidence 999999999999999999874321 1112211111122222333333334678899999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCC
Q psy15089 533 CNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVP 612 (661)
Q Consensus 533 l~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~ 612 (661)
+++|++|++++..+.+.|....+|++|++++|++|||++|+++++|||+|+||||+|||.|||++||+
T Consensus 478 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~d~------------ 545 (583)
T PRK08205 478 LTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRDDV------------ 545 (583)
T ss_pred HHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcCcc------------
Confidence 99999999888888777777778999999999999999999999999999999999999999999998
Q ss_pred CCccccccceEEEEeeC--CCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 613 KPIEEHWRKHTLTDVDV--NTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 613 ~~~~~~w~~~~~~~~~~--~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++.+.+. ..+++.++++|+.+ +.++|..|.|
T Consensus 546 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 583 (583)
T PRK08205 546 -----NYMKHTMAYKEGTDLLSDIRLDYKPVVQ--------TRYEPMERKY 583 (583)
T ss_pred -----ccceEEEEEecCCCcCCcceeeecccee--------eeeCCCCCCC
Confidence 999999876532 34678899998864 3588999988
No 10
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.4e-100 Score=858.38 Aligned_cols=581 Identities=54% Similarity=0.894 Sum_probs=505.8
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
..++||||||||+|||+||++|++.|++|+||||....++++.+++||+++..+..+.|+++.|+.|+++.+.+++|+++
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 34699999999999999999999999999999999888999999999999887766778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEe
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~ 215 (661)
++.+++++++.++||+++|++|++..+|.++...++||+..+.. ....|.++..+.+|..|+..|.+++.+.|++++.+
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~-~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~ 168 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGE-KPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVE 168 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccC-CccceeeecCCCChHHHHHHHHHHHHhcCCEEEeC
Confidence 99999999999999999999999988888777778888753221 12368888888999999999999999999999999
Q ss_pred EEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccccc
Q psy15089 216 YFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294 (661)
Q Consensus 216 ~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p 294 (661)
+.+++|+.+ +|+|+||++.+..+|+...|.||+|||||||++++|..++++..++|||+.||+++||.+.||||+||||
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~p 248 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHP 248 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcccccccC
Confidence 999999986 5899999998777888888999999999999999999989999999999999999999999999999999
Q ss_pred ccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHHHH
Q psy15089 295 TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLH 374 (661)
Q Consensus 295 ~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~ 374 (661)
+.+...+++++++++++|++++|.+|+|||++|+|...++.+||++++++..++.+++|..+..+.+|+|.++++++.+.
T Consensus 249 t~~~~~~~l~~e~~rg~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~~~v~lD~~~~~~~~~~ 328 (591)
T PRK07057 249 TGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNGDHVLLDLTHLGAETIM 328 (591)
T ss_pred CccCCCceEEeecccCCceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCCCCCEEEEeCCCCCHHHHH
Confidence 98877778899999999999999999999999998777999999999999999998877544345699999999988888
Q ss_pred hHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhh
Q psy15089 375 QRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSL 454 (661)
Q Consensus 375 ~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l 454 (661)
.++|.+.+.+..+.++|+.++|+||.|++||+||||.||.++++++.++...|+||||||||||+|+|+||+||||||||
T Consensus 329 ~~~~~i~e~~~~~~~~d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl 408 (591)
T PRK07057 329 KRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSL 408 (591)
T ss_pred HHccHHHHHHHHhcCCCCCCCCeeeehhHheeCCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHH
Confidence 99999988887766799999999999999999999999999998764223468999999999999889999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHH
Q psy15089 455 LDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCN 534 (661)
Q Consensus 455 ~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~ 534 (661)
++|+|||++||++|+++.+.....+.+.....+....++..+....++.++.+++++||++||+++||+|++++|++|++
T Consensus 409 ~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~ 488 (591)
T PRK07057 409 LDLVVFGRAAGNHIVDHVKKQHEHKPLPADAADFSLARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEGVE 488 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchhhhhhHHHHHHHhhhhccccccCHHHHHHHHHHHHHhcCCeEECHHHHHHHHH
Confidence 99999999999999988643211112222112222223333333334567889999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCCC
Q psy15089 535 KMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKP 614 (661)
Q Consensus 535 ~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~~ 614 (661)
+|++|++++..+.+.|.+..||.++++++|++||+++|+++++|||+|+||||+|||+|||++||+
T Consensus 489 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~-------------- 554 (591)
T PRK07057 489 QILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEHRDDE-------------- 554 (591)
T ss_pred HHHHHHHHHHHhccCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCCCCCCCch--------------
Confidence 999999888888778888888999999999999999999999999999999999999999999998
Q ss_pred ccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 615 IEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 615 ~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++... ++. .+.++||..+++. +..++|..|.|
T Consensus 555 ---~~~~~~~~~~---~~~-~~~~~~~~~~~~~---~~~~~~~~r~~ 591 (591)
T PRK07057 555 ---NWLKHTLWYS---EGN-RLDYKPVQMKPLT---VESVPPKARTF 591 (591)
T ss_pred ---hhcceEEEec---CCC-cccccccccccce---eeeeCCCCCCC
Confidence 8999987553 233 7788888644332 45689999988
No 11
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=100.00 E-value=2.8e-100 Score=853.98 Aligned_cols=560 Identities=42% Similarity=0.671 Sum_probs=495.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.++||||||||+|||+||+.|+++ |++|+||||....++++.+++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~--~~ds~e~~~~dt~~~g~~~~d~~ 79 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTG--DDDSLDEHFHDTVSGGDWLCEQD 79 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcC--CCCCHHHHHHHHHHhcCCcCcHH
Confidence 368999999999999999999987 58999999999889999999999987665 57899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYF 213 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~ 213 (661)
+++.+++++++.++||+++|++|++.++|++....++||++ +|+++..+.+|..|+..|.+++.+. +|+++
T Consensus 80 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~ 151 (580)
T TIGR01176 80 VVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKK--------ERTWFAADKTGFHMLHTLFQTSLTYPQIMRY 151 (580)
T ss_pred HHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccC--------CeeeecCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999899877777788765 6788888889999999999988775 79999
Q ss_pred EeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccc
Q psy15089 214 VEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293 (661)
Q Consensus 214 ~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~ 293 (661)
.++.+++|+.++++|+||++++..+|+.+.|.||+|||||||++++|..+++++.+||||++||+++||.+.||||+|||
T Consensus 152 ~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~h 231 (580)
T TIGR01176 152 DEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYH 231 (580)
T ss_pred eCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEEE
Confidence 99999999999999999999887789888999999999999999999988999999999999999999999999999999
Q ss_pred cccccCCCceecccccCCCcEEEcCCCCccccccc---------cc--cccccchhHhhhhHHHHHHhcCCCC-CCCCcE
Q psy15089 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYA---------PV--AKDLASRDVVSRSMTIEIREGRGVG-PDKDHV 361 (661)
Q Consensus 294 p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~---------p~--~~~l~~rd~~~~~i~~e~~~g~g~~-~~~~~v 361 (661)
|+.+...+++++++++++|++++|.+|+|||++|+ |. ..++++||+++++|..++.+|+++. +..+.|
T Consensus 232 Pt~~~~~~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~~~g~~v 311 (580)
T TIGR01176 232 PTGLPGTGILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDTPYGDVV 311 (580)
T ss_pred ccccCCCceEEeecccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCCCCCCEE
Confidence 99887778899999999999999999999999985 32 2589999999999999999887653 223469
Q ss_pred EEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeecccccc
Q psy15089 362 YLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCS 441 (661)
Q Consensus 362 ~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~ 441 (661)
|+|+++++++.+.+++|.+.+.+..+.|+|+.++++||.|++||+||||.||.+++ |+||||||||||+|+
T Consensus 312 ~ld~~~~~~~~~~~~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~---------t~i~GLyAaGe~a~~ 382 (580)
T TIGR01176 312 YLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCE---------TRIKGLFAVGECASV 382 (580)
T ss_pred EEEcCCCCHHHHHHHhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcc---------cccCCeEeeeccccc
Confidence 99999999999999999998888776799999999999999999999999999886 999999999999888
Q ss_pred CCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCC-CCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccc
Q psy15089 442 SVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAP-IKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYA 520 (661)
Q Consensus 442 g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 520 (661)
|+||+||||||||++|+|||++||++|++++..... ..............++..+...++...+.+++++||++||+++
T Consensus 383 G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 462 (580)
T TIGR01176 383 GLHGANRLGSNSLAELVVFGRRAGEAAAERAARHQKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATMESGC 462 (580)
T ss_pred CcCCCccccchhHHHHHHHHHHHHHHHHHhhccccccCccchhhhHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998643211 1111111112222334444444445678899999999999999
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccC--CCCc
Q psy15089 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDF--KVRV 598 (661)
Q Consensus 521 g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~--P~~d 598 (661)
|++|++++|++++.+|++|++++..+.+.+....||++|++++|++||+++|+++++|||+|+||||+|||.|| |++|
T Consensus 463 gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~~~ 542 (580)
T TIGR01176 463 GIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCTERD 542 (580)
T ss_pred cEEECHHHHHHHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCcccC
Confidence 99999999999999999999999888877777788999999999999999999999999999999999999999 9999
Q ss_pred cccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 599 DELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 599 d~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
|+ +|+||++++.+ .++++.+.++|+.+ ..+||..|.|
T Consensus 543 d~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~p~~r~y 579 (580)
T TIGR01176 543 DV-----------------HFLKHTLAFRE-SDGTLRVGYSPVKI--------TRWPPGERVY 579 (580)
T ss_pred ch-----------------hhcceEEEEec-CCCcceeeecCccc--------ceeCCCCCCC
Confidence 98 89999987654 46778999999754 3589999988
No 12
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=9.1e-100 Score=853.86 Aligned_cols=566 Identities=46% Similarity=0.763 Sum_probs=500.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcccccCceEEccCCC-CCCCHHHHHHHHHhccCCCCCH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTVAAQGGINAALGNM-EEDDWHWHMYDTVKGSDWLGDQ 133 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~~ 133 (661)
.++||||||||+|||+||++|++. |++|+||||....++++..++||+++..... ..|+++.|+.|+++.+.+++|+
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999987 4899999999888888999999988776543 3588999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEE
Q psy15089 134 DAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYF 213 (661)
Q Consensus 134 ~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~ 213 (661)
++++.+++++++.++||+++|++|++.++|.+....++||++ +|.++..+.+|..++..|.+.+++.||+++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~ 153 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH--------NRTCYAADKTGHAILHELVNNLRRYGVTIY 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeecccccccc--------CeeEecCCCChHHHHHHHHHHHhhCCCEEE
Confidence 999999999999999999999999998888776667777764 678888888999999999999999999999
Q ss_pred EeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccc
Q psy15089 214 VEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293 (661)
Q Consensus 214 ~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~ 293 (661)
.++.+++|+.++++|+|+++++..+|+...|.||+|||||||++++|..++++..++|||+.||+++||.+.+|||+|||
T Consensus 154 ~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf~ 233 (575)
T PRK05945 154 DEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH 233 (575)
T ss_pred eCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEEe
Confidence 99999999999999999998877788877899999999999999999888889999999999999999999999999999
Q ss_pred cccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCC----CCcEEEeCCCCC
Q psy15089 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPD----KDHVYLQLHHLP 369 (661)
Q Consensus 294 p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~----~~~v~~d~~~~~ 369 (661)
|+.+.+.+.+++++++++|++++|.+|+|||++|+|...++.+||++++++..++.+++|..+. ...+|+|+++++
T Consensus 234 pt~~~~~~~l~~~~~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~v~ld~~~~~ 313 (575)
T PRK05945 234 PTGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPFVYLDLRHMG 313 (575)
T ss_pred eeeecCCCeEEeeecccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCEEEEECCCCC
Confidence 9988777888899999999999999999999999998779999999999999999888875321 235999999999
Q ss_pred hHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCcc
Q psy15089 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449 (661)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrl 449 (661)
++.+..++|...+.+....|+|+.++|+||.|++||+||||+||.++++++.+ .|+||||||||||+|+|+||+|||
T Consensus 314 ~~~~~~~~~~~~~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~~---~t~I~GLyAaGE~a~~g~hGanrl 390 (575)
T PRK05945 314 KEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSA---DGLVEGFFAAGECACVSVHGANRL 390 (575)
T ss_pred HHHHHHHhHHHHHHHHHHhCcCCCCceEEeeccceecCCCeeECCCceeccCC---CCccCCeEeeeccccccccccccc
Confidence 88888888876666665679999999999999999999999999999988766 689999999999998899999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHhcCCCCCCCccccc-chhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHH
Q psy15089 450 GANSLLDLVVFGRACAKTIAEENKPGAPIKPFAAN-AGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQET 528 (661)
Q Consensus 450 gg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~ 528 (661)
|||+|++|+|||++||++|+++++... .+..... ..+...+++..+...++..++.+++++||++||+++|++|++++
T Consensus 391 ggnsl~~~~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 469 (575)
T PRK05945 391 GSNSLLECVVYGRRTGAAIAEYVQGRK-LPEVDEQRYLKEAKQRIQALLDQSGTYRINQLRQQFQDCMTDHCGVFRTEEI 469 (575)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhccC-CCCcchhhHHHHHHHHHhhhhccccccChHHHHHHHHHHHHcCccEEECHHH
Confidence 999999999999999999998874321 1222211 11233344444444445667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCC
Q psy15089 529 LQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLE 608 (661)
Q Consensus 529 L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~ 608 (661)
|++|+++|++|++++..+.+.|.+..+|++|++++|++|||++|+++++|||+|+||||+|||.|||++||+
T Consensus 470 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~-------- 541 (575)
T PRK05945 470 MQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQ-------- 541 (575)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCch--------
Confidence 999999999999988888888877889999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 609 GQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 609 ~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++++++ ++.+++.++||.+ +.++|..|.|
T Consensus 542 ---------~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~ 575 (575)
T PRK05945 542 ---------NFLKHTLAYYS--PAGIDIQYMPVVI--------TMFEPQERKY 575 (575)
T ss_pred ---------hhhceEEEEec--CCCceEEeeccee--------eeeCCCCCCC
Confidence 99999988764 5778999999864 3589999998
No 13
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=4.2e-99 Score=847.99 Aligned_cols=560 Identities=33% Similarity=0.472 Sum_probs=484.3
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-CCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-EEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.+||||||+|+|||+||++|+++|++|+||||....+++|.+++||+++..+.. ..|+++.|+.|+++.+.++++++++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 479999999999999999999999999999999988899999999999876532 4688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCC----cEE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD----CNY 212 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~g----v~i 212 (661)
+.+++++++.++||+++|++|++.++|.+....++||++ +|+++..+.+|..|+..|.+.+++.+ |++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i 154 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLH--------HRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK 154 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeec--------ccccccCCCcHHHHHHHHHHHHHhhhccCCcEE
Confidence 999999999999999999999988888776667777765 56666778899999999998887643 889
Q ss_pred EEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccc
Q psy15089 213 FVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQ 291 (661)
Q Consensus 213 ~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q 291 (661)
+.++.+++|+.+ +|+|+||++.+..+++.+.|.||+|||||||++++|..+++++.+||||++||+++||.+.||||+|
T Consensus 155 ~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q 234 (589)
T PRK08641 155 YEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQ 234 (589)
T ss_pred EeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEE
Confidence 999999999985 6899999999877888888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCC--ceecccccCCCcEE-EcCCCCc--cccccccccccccchhHhhhhHHHHH-HhcCCCCCCCCcEEEeC
Q psy15089 292 FHPTGIYGAG--CLITEGCRGEGGYL-INSEGER--FMERYAPVAKDLASRDVVSRSMTIEI-REGRGVGPDKDHVYLQL 365 (661)
Q Consensus 292 ~~p~~~~~~g--~l~~e~~~~~g~~l-vn~~G~r--f~~~~~p~~~~l~~rd~~~~~i~~e~-~~g~g~~~~~~~v~~d~ 365 (661)
|||+.+.+.+ .+++++++++|+.+ +|.+|+| ||+++.|...++++||++++++..++ ..+++. +..+.+|+|+
T Consensus 235 ~hPt~~~~~~~~~l~~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~-~g~~~v~ld~ 313 (589)
T PRK08641 235 IHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGI-NGENMVYLDL 313 (589)
T ss_pred EeeeeecCCCcceEeeeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCC-CCCceEEEEc
Confidence 9999877654 58899999998855 5899999 77776676678999999999999877 455553 2234699999
Q ss_pred CCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCC
Q psy15089 366 HHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHG 445 (661)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hG 445 (661)
++++.+.|.++++.+.+.+..+.|+|+.++||||.|++||+||||.||.+++ |+||||||||||+ +|+||
T Consensus 314 ~~~~~e~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~---------t~I~GLyAaGE~~-~g~hG 383 (589)
T PRK08641 314 SHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQM---------TNIPGLFAAGECD-YSYHG 383 (589)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCC---------eECCCEEECcccc-cCCCC
Confidence 9999999999999988887766799999999999999999999999999875 9999999999986 68999
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHhcCCCCC-CCcccc----cchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccc
Q psy15089 446 ANRLGANSLLDLVVFGRACAKTIAEENKPGAP-IKPFAA----NAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYA 520 (661)
Q Consensus 446 anrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 520 (661)
+||||||||++|+|||++||++|+++++.... ....+. ...++...++..+...++..++.+++++||++||+++
T Consensus 384 anrlggnsl~~~lv~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 463 (589)
T PRK08641 384 ANRLGANSLLSAIYGGMVAGPNAVEYIKGLGKSADDVSSSVFEQALKQEQEKFDNILSMDGTENAYVLHKELGEWMTDNV 463 (589)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999988643110 011111 1112222333333333344567889999999999999
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccc
Q psy15089 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDE 600 (661)
Q Consensus 521 g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~ 600 (661)
||+|++++|++||++|++|+++++++.+.|.+..+|++|+.++|++|||++|+++++|||+|+||||+|||+|||++||+
T Consensus 464 gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~ 543 (589)
T PRK08641 464 TVVRENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERNDE 543 (589)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccCch
Confidence 99999999999999999999888888878888889999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 601 LDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
||+||+++.++.++|.++++++||.+ +.++|..|.|
T Consensus 544 -----------------~~~~~~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~ 579 (589)
T PRK08641 544 -----------------NWLKTTMATYTPEGEEPEFSYEDVDT--------SLIPPRKRDY 579 (589)
T ss_pred -----------------hhhceEEEEecCCCCCceEEeecccc--------ceeCCccccC
Confidence 99999987665455678999999964 3588999987
No 14
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=4.7e-99 Score=852.09 Aligned_cols=562 Identities=29% Similarity=0.419 Sum_probs=479.1
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC-CCCCcccccCceEEccCCC-CCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP-TRSHTVAAQGGINAALGNM-EEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~-~~~~s~~a~Gg~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.++||||||+|.|||+||+.|++.|++|+||||... .++++.+++||+++..+.. ..|+++.|+.|+++.+.+++|++
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~ 113 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA 113 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence 479999999999999999999999999999998644 5578888999998765422 46889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHH----HHHHHHHHhCCc
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLL----HTLYGQSLRYDC 210 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~----~~L~~~a~~~gv 210 (661)
+++.+++++++.++||+++|++|.++.++.+....++||+. +|.++..+.+|..++ +.|.+.+++.||
T Consensus 114 lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~--------~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV 185 (640)
T PRK07573 114 NVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQV--------SRTFYARGQTGQQLLLGAYQALSRQIAAGTV 185 (640)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCccc--------ceeEeCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987777666666677654 577777777887776 556667778899
Q ss_pred EEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccc
Q psy15089 211 NYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290 (661)
Q Consensus 211 ~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~ 290 (661)
++++++.+++|+.++++|+||++.+..+|+.+.|.||+|||||||++++|..+++++.+||||++||+++||.+.||||+
T Consensus 186 ~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~me~v 265 (640)
T PRK07573 186 KMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANPCFT 265 (640)
T ss_pred EEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCccce
Confidence 99999999999999999999999876678888899999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCC------ceecccccCCCcEEEcCCC------------Cc--cccccccccccccchhHhhhhHHHHHHh
Q psy15089 291 QFHPTGIYGAG------CLITEGCRGEGGYLINSEG------------ER--FMERYAPVAKDLASRDVVSRSMTIEIRE 350 (661)
Q Consensus 291 q~~p~~~~~~g------~l~~e~~~~~g~~lvn~~G------------~r--f~~~~~p~~~~l~~rd~~~~~i~~e~~~ 350 (661)
||||+.+...+ .+++++++++|++++|.+| +| ||.+|+|...+|+|||+++++|..|+++
T Consensus 266 q~hPt~~~~~g~~~~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~~~~~~f~~~~~~~~~el~~rd~v~rai~~e~~~ 345 (640)
T PRK07573 266 QIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLERRYPAFGNLVPRDVASRAAKERCDA 345 (640)
T ss_pred eeccccccCCCcccccceEEeccccCCceEEEcCcccccccccccccchhhhchhhhCccccCCCCcCHHHHHHHHHHHh
Confidence 99999876533 5889999999999999984 56 9999988878999999999999999999
Q ss_pred cCCCCCCCCcEEEeCCC----CChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCC
Q psy15089 351 GRGVGPDKDHVYLQLHH----LPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQD 426 (661)
Q Consensus 351 g~g~~~~~~~v~~d~~~----~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~ 426 (661)
|+|+.+..++||+|+++ ++.+.+.++||.+.+.++.+.|+||.++||||.|++||+||||.||.+++
T Consensus 346 grg~~~~~~~v~ld~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~~~~i~v~p~~hy~~GGi~vd~~~~--------- 416 (640)
T PRK07573 346 GRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFDMYERITGENPYETPMRIYPAVHYTMGGLWVDYNLM--------- 416 (640)
T ss_pred cCCCCCCCCEEEEeCchhhhhcCHHHHHHhChHHHHHHHHhcCCCcccCeeeeecccceecCCEEECCCCc---------
Confidence 99875445579999985 67788999999999988776799999999999999999999999999886
Q ss_pred ccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHH-HHHhcCCCCCCCcc----c--ccchhhhHhhhhHhhhc
Q psy15089 427 KIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKT-IAEENKPGAPIKPF----A--ANAGESSVANLDWVRHA 499 (661)
Q Consensus 427 T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~-aa~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~ 499 (661)
|+||||||||||+ +|+|||||||||||++|+|||++||+. |++++......... . ....++..+++..+...
T Consensus 417 T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (640)
T PRK07573 417 STIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVSTDHPEFKEAEAEVQDRIDRLLNI 495 (640)
T ss_pred cccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccCCccccchhhHHHHHHHHHHHHhhc
Confidence 9999999999985 689999999999999999999999987 66655321000000 0 01112222333333333
Q ss_pred CCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHh-ccccccCccccchhHHHHHHHHhHHHHHHHHHHH
Q psy15089 500 KGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLA-HLKVFDRSLIWNTDLVETLELQNLMINAIQTMFA 578 (661)
Q Consensus 500 ~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~-~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~a 578 (661)
.++.++.+++++||++||+|+||+|++++|++|+++|++|++++. .+.+.+....+|+++++++|++||+++|+++++|
T Consensus 496 ~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~A~~i~~a 575 (640)
T PRK07573 496 KGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGELMCRD 575 (640)
T ss_pred cCCCCHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999998874 5666666667899999999999999999999999
Q ss_pred HHhcccCCCccccccCC------CCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCccccc
Q psy15089 579 AENRKESRGAHAREDFK------VRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECA 652 (661)
Q Consensus 579 al~R~ESRG~H~R~D~P------~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~ 652 (661)
||+|+||||+|||+||| ++||+ +|.+|++.+++..+|+++++|+||.+ .
T Consensus 576 Al~R~ESRG~H~R~D~P~~~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 630 (640)
T PRK07573 576 ALHREESCGGHFREEHQTEDGEALRDDE-----------------NFAYVAAWEYKGDGKEPVLHKEPLEF--------E 630 (640)
T ss_pred HHhCcccccccCCccCCCCccccccChh-----------------hhceEEEEEecCCCCCceEEeecccc--------c
Confidence 99999999999999999 56666 89999844345556889999999864 4
Q ss_pred ccCCCCCCC
Q psy15089 653 TIAPAIRSY 661 (661)
Q Consensus 653 ~~~~~~r~y 661 (661)
.+||..|.|
T Consensus 631 ~~~~~~~~~ 639 (640)
T PRK07573 631 NVKLAQRSY 639 (640)
T ss_pred eeCCCCCCC
Confidence 689999998
No 15
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=1.1e-98 Score=843.35 Aligned_cols=560 Identities=42% Similarity=0.688 Sum_probs=494.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.++||||||+|+|||+||+.|+++ |++|+||||....++++.+++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~--~~ds~e~~~~d~~~~g~~~~d~~ 80 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ--DHDSFDYHFHDTVAGGDWLCEQD 80 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcC--CCCCHHHHHHHHHHhcccCCCHH
Confidence 468999999999999999999987 47999999998889999999999987764 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYF 213 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~ 213 (661)
+++.+++++++.++||+++|++|++.++|.+....++||+. +|+++..+.+|..|+..|.+++.+. +++++
T Consensus 81 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~ 152 (582)
T PRK09231 81 VVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKI--------ERTWFAADKTGFHMLHTLFQTSLKYPQIQRF 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccC--------CeeEecCCCcHHHHHHHHHHHhhcCCCcEEE
Confidence 99999999999999999999999998888776667788765 6788888889999999999888775 79999
Q ss_pred EeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccc
Q psy15089 214 VEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293 (661)
Q Consensus 214 ~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~ 293 (661)
.++.+++|+.++++|+||++++..+|+...|+||+||+||||++++|..++++..+||||++||+++||.+.||||+|||
T Consensus 153 ~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~ 232 (582)
T PRK09231 153 DEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYH 232 (582)
T ss_pred eCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceeee
Confidence 99999999999999999999887788888899999999999999999888888899999999999999999999999999
Q ss_pred cccccCCCceecccccCCCcEEEcCCCCccccccc---------cc--cccccchhHhhhhHHHHHHhcCCCCC-CCCcE
Q psy15089 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYA---------PV--AKDLASRDVVSRSMTIEIREGRGVGP-DKDHV 361 (661)
Q Consensus 294 p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~---------p~--~~~l~~rd~~~~~i~~e~~~g~g~~~-~~~~v 361 (661)
|+.+...+.+++++++++|++++|.+|+|||++|+ |. ..++++||+++++++.++.+++++.. ..+.|
T Consensus 233 Pt~~~~~~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~~~~g~~v 312 (582)
T PRK09231 233 PTGLPGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVV 312 (582)
T ss_pred cceeCCCCceeeecccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCccCCCCCEE
Confidence 99888778899999999999999999999999884 32 24899999999999999988876532 12359
Q ss_pred EEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeecccccc
Q psy15089 362 YLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCS 441 (661)
Q Consensus 362 ~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~ 441 (661)
|+|+++++++.+.+++|.+.+.+..+.|+|+.++++|+.|..||++|||.||.+++ |+||||||||||+|+
T Consensus 313 ~ld~~~~~~~~~~~~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~i~GLyAaGe~~~~ 383 (582)
T PRK09231 313 YLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCE---------TRIKGLFAVGECSSV 383 (582)
T ss_pred EEECCcCCHHHHHHHhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCc---------cccCCEEeccccccc
Confidence 99999999999999999999988876799999999999999999999999999886 999999999999877
Q ss_pred CCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCC-CCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccc
Q psy15089 442 SVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAP-IKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYA 520 (661)
Q Consensus 442 g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 520 (661)
|+||+||||||+|++|+|||++||++|+++++.... .+.......+...+++..++..+++.+|.+++++||++||+++
T Consensus 384 g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 463 (582)
T PRK09231 384 GLHGANRLGSNSLAELVVFGRVAGEQAAERAATAGPGNEAALDAQAADVEQRLKALVNQEGGENWAKIRDEMGLSMEEGC 463 (582)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998753211 1111111122223334444444456789999999999999999
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCcccccc--CCCCc
Q psy15089 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHARED--FKVRV 598 (661)
Q Consensus 521 g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D--~P~~d 598 (661)
|++|++++|++++.+|++|++++..+.+.|.+..||++|++++|++||+++|+++++|||+|+||||+|||.| ||++|
T Consensus 464 gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~~~ 543 (582)
T PRK09231 464 GIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCTERD 543 (582)
T ss_pred cEEECHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCCccC
Confidence 9999999999999999999988888888888888999999999999999999999999999999999999999 99999
Q ss_pred cccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 599 DELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 599 d~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
|+ +|+||++++++. +|++.++++|+.++ .++|..|.|
T Consensus 544 d~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~p~~r~~ 580 (582)
T PRK09231 544 DV-----------------NFLKHTLAFYNA-DGTPRIEYSDVKIT--------KSPPAKRVY 580 (582)
T ss_pred hh-----------------hhceEEEEEecC-CCCcceeecCcccc--------ccCCccCCC
Confidence 98 999999886653 67789999998643 589999988
No 16
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=100.00 E-value=1.4e-98 Score=843.82 Aligned_cols=558 Identities=29% Similarity=0.425 Sum_probs=483.4
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEecC-CCCCCcccccCceEEccCCC-CCCCHHHHHHHHHhccCCCCCHHHHHH
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLF-PTRSHTVAAQGGINAALGNM-EEDDWHWHMYDTVKGSDWLGDQDAIHY 138 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~~-~~~~~s~~a~Gg~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~~~~~~~ 138 (661)
|||||+|+|||+||+.|++.|++|+||||.. ..++++.+++||+++..+.. ..|+++.|+.|+++.+.+++|+++++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 7999999999999999999999999999987 66778889999987765432 467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC----CcEEEE
Q psy15089 139 MTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY----DCNYFV 214 (661)
Q Consensus 139 ~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~----gv~i~~ 214 (661)
+++++++.++||+++|++|.+..+|.+....++||++ +|+++..+.+|..++..|.+.+++. ||++++
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~ 152 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQV--------SRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYE 152 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCccc--------CcceecCCCChhHHHHHHHHHHHhhhccCCcEEEe
Confidence 9999999999999999999988777666666777654 5777777778999988887776543 799999
Q ss_pred eEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccc
Q psy15089 215 EYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293 (661)
Q Consensus 215 ~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~ 293 (661)
++.+++|+.++ |+|+||++.+..+|+...|.||+|||||||++++|..+++++.+||||++||+++||.+.||||+|||
T Consensus 153 ~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~ 232 (603)
T TIGR01811 153 GWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIH 232 (603)
T ss_pred CcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEE
Confidence 99999999864 69999999876678888899999999999999999999999999999999999999999999999999
Q ss_pred cccccCC------CceecccccCCCcEEEcC------------CCCc--cccccccccccccchhHhhhhHHHHHHhcCC
Q psy15089 294 PTGIYGA------GCLITEGCRGEGGYLINS------------EGER--FMERYAPVAKDLASRDVVSRSMTIEIREGRG 353 (661)
Q Consensus 294 p~~~~~~------g~l~~e~~~~~g~~lvn~------------~G~r--f~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g 353 (661)
|+.+... +++++++++++|++++|. +|+| ||.++.|...+|++||+++++|..++.+|+|
T Consensus 233 Pt~~~~~g~~~~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~g 312 (603)
T TIGR01811 233 PTAIPVDGTWQSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGKG 312 (603)
T ss_pred eeeecCCCcccccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcCC
Confidence 9987653 257899999999999999 9999 8987666556999999999999999999988
Q ss_pred CCCCCCcEEEeCCCCCh----HHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccc
Q psy15089 354 VGPDKDHVYLQLHHLPP----EDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKII 429 (661)
Q Consensus 354 ~~~~~~~v~~d~~~~~~----~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~i 429 (661)
..+..++||+|+++++. +.++++||.+.+.++.+.|+|+.++||||.|++||+||||.+|.+++ |+|
T Consensus 313 ~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~---------t~i 383 (603)
T TIGR01811 313 VGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQM---------TNI 383 (603)
T ss_pred cCCCCCeEEEEcCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCc---------ccC
Confidence 75445679999999988 88999999999988877899999999999999999999999999886 999
Q ss_pred cceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCC-CCCccc------ccchhhhHhhhhHhhhcCCC
Q psy15089 430 HGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGA-PIKPFA------ANAGESSVANLDWVRHAKGD 502 (661)
Q Consensus 430 pGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~ 502 (661)
|||||||||+ +++||+||||||||++|+|||++||++|++++.... ..+... ....++..+++..+...++.
T Consensus 384 ~gL~a~Ge~~-~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (603)
T TIGR01811 384 PGLFAAGECD-FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALAEEQERFDRLLKMRGD 462 (603)
T ss_pred CCEEECcccc-cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHHHHHhhccCC
Confidence 9999999986 689999999999999999999999999998753211 011111 11112222333334333444
Q ss_pred CCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHH-hccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHh
Q psy15089 503 ITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDL-AHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAEN 581 (661)
Q Consensus 503 ~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~-~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~ 581 (661)
.++.+++++||++||+++||+|++++|++||++|++|++++ +.+.+.|.+..||++|++++|++||+++|+++++|||+
T Consensus 463 ~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aal~ 542 (603)
T TIGR01811 463 ENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDALN 542 (603)
T ss_pred CCHHHHHHHHHHHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999887 45777777788999999999999999999999999999
Q ss_pred cccCCCccccccCC------CCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccC
Q psy15089 582 RKESRGAHAREDFK------VRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIA 655 (661)
Q Consensus 582 R~ESRG~H~R~D~P------~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~ 655 (661)
|+||||+|||+||| ++||+ +|+||++++++.++|+++++|+||++ ..++
T Consensus 543 R~ESRG~H~R~D~P~~~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 597 (603)
T TIGR01811 543 RNESCGAHFRPEFPTPDGEAERNDE-----------------EFLKVTAWEFQGENDAPEFHYEELDF--------ELVP 597 (603)
T ss_pred CcccccccccccCCCccccccCChh-----------------hhheeEEEEecCCCCCceEEeecccc--------ceeC
Confidence 99999999999999 66776 89999987776566899999999964 4699
Q ss_pred CCCCCC
Q psy15089 656 PAIRSY 661 (661)
Q Consensus 656 ~~~r~y 661 (661)
|..|.|
T Consensus 598 ~~~~~~ 603 (603)
T TIGR01811 598 PRKRDY 603 (603)
T ss_pred CCCCCC
Confidence 999998
No 17
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=9.3e-98 Score=838.77 Aligned_cols=567 Identities=45% Similarity=0.691 Sum_probs=497.0
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCC---CcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEG---FKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGD 132 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G---~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~ 132 (661)
..++||||||||+|||+||+.|+++| ++|+||||....++++.+++||+++.......|+++.|+.|+++.+.+++|
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 34689999999999999999999998 899999999988999999999998876543468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHh-CCcE
Q psy15089 133 QDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLR-YDCN 211 (661)
Q Consensus 133 ~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~-~gv~ 211 (661)
+++++.+++++++.++||+++|++|++.++|.+....++||++ +|+++..+.+|..+++.|.+++.+ .||+
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~--------~r~~~~~d~tG~~i~~~L~~~~~~~~gv~ 154 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSF--------PRTTFAADKTGFYIMHTLYSRALRFDNIH 154 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCccc--------ceeeEcCCCchHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999999999998888876667777764 678888888999999999998876 5899
Q ss_pred EEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccc
Q psy15089 212 YFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQ 291 (661)
Q Consensus 212 i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q 291 (661)
++.++.+++|+.++++|+||++++..+|+...|.||.|||||||++++|..++++..++|||+.||+++||.+.||||+|
T Consensus 155 i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~~q 234 (577)
T PRK06069 155 FYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQ 234 (577)
T ss_pred EEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCccee
Confidence 99999999999999999999998777888778999999999999999998888888999999999999999999999999
Q ss_pred cccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCC--CCcEEEeCCCCC
Q psy15089 292 FHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPD--KDHVYLQLHHLP 369 (661)
Q Consensus 292 ~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~--~~~v~~d~~~~~ 369 (661)
|||+.+.+.+.+++++++++|++++|.+|+|||++|+|...++.+|+++++++..++.+|+|+... ...+|+|+++++
T Consensus 235 ~~pt~~~~~g~l~~e~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~v~ld~~~~~ 314 (577)
T PRK06069 235 FHPTGLVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCYVGLDLRHLG 314 (577)
T ss_pred EeeeeeCCCCcEEEeeccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceEEEEecccCC
Confidence 999988888888999999999999999999999999998789999999999999999888875321 134899999999
Q ss_pred hHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCcc
Q psy15089 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449 (661)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrl 449 (661)
++.+.+++|.+.+.+..+.|+|+.++++||.|.+||+||||.||.++++.+.+ .++||||||||||+|+|+||+|||
T Consensus 315 ~~~~~~~~~~i~~~~~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~~---g~~I~GLyAaGE~a~~g~hGanrl 391 (577)
T PRK06069 315 EEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTAD---GEWVRGLWAAGEAAAVSVHGANRL 391 (577)
T ss_pred HHHHHHHhhHHHHHHHHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCCC---CCEeCCeEeccccccccccccccc
Confidence 88899999999888876679999999999999999999999999999976655 577999999999988799999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHhcCCCCCCCccccc-chhhhHhh-hhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHH
Q psy15089 450 GANSLLDLVVFGRACAKTIAEENKPGAPIKPFAAN-AGESSVAN-LDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527 (661)
Q Consensus 450 gg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~ 527 (661)
|||+|++|+|||++||++|+++++.... +..... ........ +..+...++..++.+++++||++||+++|++|+++
T Consensus 392 ggnsl~~~~v~Gr~Ag~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~ 470 (577)
T PRK06069 392 GSNSTAECLVWGRIAGEQAAEYALKRPA-PSSPVEKLAEKEEKRIFDKLLKKEGGEPSYEIRRELNDIMDKNFGIFRDES 470 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCC-CCCcchhhhhHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHhcccccCHH
Confidence 9999999999999999999998753211 111111 01111111 12223333456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCC
Q psy15089 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPL 607 (661)
Q Consensus 528 ~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~ 607 (661)
+|++||++|++|++++..+.+.+....+|++|++++|++||+++|+++++|||+|+||||+|||+|||++||+
T Consensus 471 ~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~------- 543 (577)
T PRK06069 471 GLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDE------- 543 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCch-------
Confidence 9999999999999888888878877888999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 608 EGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 608 ~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|.||++++++. ++ ..+.++|+++ +.+||..|.|
T Consensus 544 ----------~~~~~~~~~~~~-~~-~~~~~~~~~~--------~~~~~~~~~~ 577 (577)
T PRK06069 544 ----------NWLKHTLAYYTG-GG-PKVTYTPVTI--------TKWKPEERKY 577 (577)
T ss_pred ----------hhhceEEEEEcC-CC-ceeeecCccc--------cccCCCCCCC
Confidence 899999887642 34 5788888743 4689999988
No 18
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=6.1e-98 Score=835.48 Aligned_cols=567 Identities=55% Similarity=0.872 Sum_probs=498.9
Q ss_pred HHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC-CCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q psy15089 71 LRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN-MEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIE 149 (661)
Q Consensus 71 l~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~-~~~d~~~~~~~d~~~~g~~l~~~~~~~~~~~~~~~~i~~ 149 (661)
|+||++|+++|++|+||||....+|+|.+++||+++..+. .+.|++++|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999887653 256889999999999999999999999999999999999
Q ss_pred HHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEE
Q psy15089 150 LENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGEC 228 (661)
Q Consensus 150 l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v 228 (661)
|++||++|++.++|.+....++||+..+..++..+|+++..+.+|..|+..|.+.+++.||+++.++.+++|+.+ +|+|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE
Confidence 999999999999998888888999877666667789999999999999999999999999999999999999985 7899
Q ss_pred EEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccccccCCCceecccc
Q psy15089 229 KGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGC 308 (661)
Q Consensus 229 ~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~~e~~ 308 (661)
+||++++..+|+.+.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+.+.+.++++++
T Consensus 161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~~~l~~e~~ 240 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240 (570)
T ss_pred EEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCCceEeeccc
Confidence 99999887899999999999999999999999989999999999999999999999999999999998887788999999
Q ss_pred cCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHHHHhHhhhHHHHHHHHc
Q psy15089 309 RGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFA 388 (661)
Q Consensus 309 ~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~ 388 (661)
+++|++++|.+|+|||++|+|...++.+||+++++|..++.++++..+..+.+|+|+++++++.++++++.+.+.+..+.
T Consensus 241 rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~l~~~~~~~~~~~~~~~ 320 (570)
T PRK05675 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFA 320 (570)
T ss_pred cCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHHHHHhccHHHHHHHHhc
Confidence 99999999999999999999987799999999999999999887754444569999999999999999999888777767
Q ss_pred CCCCCCCCeeeeccccccccCcccCCCCeEEeec-CCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHH
Q psy15089 389 GVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHV-NGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKT 467 (661)
Q Consensus 389 gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d-~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~ 467 (661)
++||.++|+||.|++||+||||.||.++++++.| .++.|+||||||||||+|+|+||+|||+||||++|+|||++||++
T Consensus 321 ~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~ 400 (570)
T PRK05675 321 HVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLH 400 (570)
T ss_pred CCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998776 345689999999999998899999999999999999999999999
Q ss_pred HHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccc
Q psy15089 468 IAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLK 547 (661)
Q Consensus 468 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~ 547 (661)
|+++++.....+.......+....++..+...+++.++.+++++||++||+++||+|++++|++||.+|++|++++..+.
T Consensus 401 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 480 (570)
T PRK05675 401 LEKALKEGIEYRDASESDIDAALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480 (570)
T ss_pred HHHHHhcccccccCChHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhCCceecHHHHHHHHHHHHHHHHHHHhhc
Confidence 99886432111122222222333334444444456778899999999999999999999999999999999999998888
Q ss_pred cccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCCCccccccceEEEEe
Q psy15089 548 VFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDV 627 (661)
Q Consensus 548 ~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 627 (661)
+.|.+..+|.++++++|++||+++|+++++|||+|+||||+|||+|||++||+ +|+||++...
T Consensus 481 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~-----------------~~~~~~~~~~ 543 (570)
T PRK05675 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDE-----------------NWLCHTLYFP 543 (570)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChh-----------------hhcceEEEec
Confidence 77777788899999999999999999999999999999999999999999998 8999988553
Q ss_pred eCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 628 DVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 628 ~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+ +. .+.++|+...++ .+..++|..|.|
T Consensus 544 ~---~~-~~~~~~~~~~~~---~~~~~~~~~~~y 570 (570)
T PRK05675 544 G---EK-RVGKRAVNFAPK---TVPAFEPKVRTY 570 (570)
T ss_pred c---CC-ccceeccccccc---cccccCCCCCCC
Confidence 2 22 345566654432 245799999998
No 19
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=4.7e-99 Score=828.92 Aligned_cols=551 Identities=54% Similarity=0.830 Sum_probs=513.4
Q ss_pred ccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC---CCCHHHHHHHHHhccCCCC
Q psy15089 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME---EDDWHWHMYDTVKGSDWLG 131 (661)
Q Consensus 55 ~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~---~d~~~~~~~d~~~~g~~l~ 131 (661)
+..++||||||||.|||+||++|++.|++|+||||....+|+|.+++||+++.+++.. .|++++|++|+++.+++++
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~ 82 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLG 82 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcC
Confidence 4567999999999999999999999999999999999999999999999999987543 3689999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHh-CCc
Q psy15089 132 DQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLR-YDC 210 (661)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~-~gv 210 (661)
|+++++.+++.+++.+.+|++||++|.+.++|.++++.|+|++. +|+++.++.+|+.++..|.+++.+ .++
T Consensus 83 dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~--------~rt~~~~~~tG~~ll~~L~~~~~~~~~~ 154 (562)
T COG1053 83 DQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSK--------PRTCFAADKTGHELLHTLYEQLLKFSGI 154 (562)
T ss_pred CHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCC--------CcceecCCCCcHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999886 488899999999999999999998 568
Q ss_pred EEEEeEEEEEEEEeCCE-EEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcc
Q psy15089 211 NYFVEYFALDLIIENGE-CKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEF 289 (661)
Q Consensus 211 ~i~~~~~v~~l~~~~g~-v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef 289 (661)
+++.++++++|+++++. |.|++.+++.+|+.+.|+||+||+||||++..|..+++...+||||+.|++++|+.+.||||
T Consensus 155 ~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~ 234 (562)
T COG1053 155 EIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEF 234 (562)
T ss_pred hhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCc
Confidence 99999999999988654 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCceecccccCCCcEEEcCCCCccccc--cccccccccchhHhhhhHHHHHHhcCCC-CCCCCcEEEeCC
Q psy15089 290 VQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMER--YAPVAKDLASRDVVSRSMTIEIREGRGV-GPDKDHVYLQLH 366 (661)
Q Consensus 290 ~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~--~~p~~~~l~~rd~~~~~i~~e~~~g~g~-~~~~~~v~~d~~ 366 (661)
+||||+++.+.+++++|++|++|++++|++|+|||++ |.|...++.|||++++++..++++|+|+ .+..+.+++|+.
T Consensus 235 ~Q~hpt~~~~~g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ldl~ 314 (562)
T COG1053 235 VQFHPTGLVGSGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLDLR 314 (562)
T ss_pred cccccceecCCceEEeeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCceEEEEhh
Confidence 9999999999999999999999999999999999999 6788889999999999999999999987 466678999999
Q ss_pred CCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCC
Q psy15089 367 HLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGA 446 (661)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGa 446 (661)
+++++.+.+++|.+.+.+..+.|+|+.++|+||.|+.||+||||++|. +++ .|.||||||||||+|..+||+
T Consensus 315 hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~~-------~t~i~GLfAaGe~~~~~~hGa 386 (562)
T COG1053 315 HLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GRV-------ETKIPGLFAAGEAAGVSHHGA 386 (562)
T ss_pred hcChHHHHhcCchHHHHHHhhcCCCcccceeEecccceeccCCEeecc-ccc-------ccCCCCeEECceecccccCCc
Confidence 999989999999999998888999999999999999999999999996 432 478999999999999889999
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCH
Q psy15089 447 NRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQ 526 (661)
Q Consensus 447 nrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~ 526 (661)
||||+|||++++|||++||..++++++.....+ +....+...++++.+..+.+..++.+++++||++|+++++|+|++
T Consensus 387 nrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R~~ 464 (562)
T COG1053 387 NRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNE 464 (562)
T ss_pred ccCCccccHHHHHHHHHHHHHHHHHHHhccCCC--chhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhCCceeccCH
Confidence 999999999999999999999999987543222 344556677788888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCC
Q psy15089 527 ETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKP 606 (661)
Q Consensus 527 ~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~ 606 (661)
+.|++++++|++|++++.++.+.|.+..+|.+|.+++|+.|||.+|++++.+||.|+||||+|||+|||++||+
T Consensus 465 ~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~------ 538 (562)
T COG1053 465 EGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDE------ 538 (562)
T ss_pred HHHHHHHHHHHHHHHHhhcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchH------
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccceEEEEeeCCCCceEEEeecccc
Q psy15089 607 LEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVID 643 (661)
Q Consensus 607 ~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~ 643 (661)
||+||++++++. +++++|+||.+
T Consensus 539 -----------~w~kht~~~~~~---~~~~~~~~v~~ 561 (562)
T COG1053 539 -----------NWLKHTLASYDK---KPRLEYEPVKI 561 (562)
T ss_pred -----------HHHHHHHHhcCC---ccceeeeeccc
Confidence 999999999863 89999999964
No 20
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=100.00 E-value=3e-97 Score=830.00 Aligned_cols=565 Identities=69% Similarity=1.115 Sum_probs=498.7
Q ss_pred hHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q psy15089 77 LVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMP 156 (661)
Q Consensus 77 aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~~~~~~~~i~~l~~~Gv~ 156 (661)
|++.|++|+||||....+|+|.+++||+++..+..+.|++++|+.|+++.+.+++|+++++.+++++++.++||+++|++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46789999999999999999999999999888765689999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEc
Q psy15089 157 FSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCL 236 (661)
Q Consensus 157 f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~ 236 (661)
|++.++|.+....++||+..++..+..+|+++..+.+|..|+..|.+++++.||+|+.++.+++|+.++|+|+||++++.
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~ 160 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCL 160 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc
Confidence 99988887776778888765444335679999889999999999999999999999999999999998999999999887
Q ss_pred CCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccccccCCCceecccccCCCcEEE
Q psy15089 237 EDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLI 316 (661)
Q Consensus 237 ~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lv 316 (661)
.+|+...|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+.+.+.+++++++++|++++
T Consensus 161 ~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~~~l~~e~~r~~g~~lv 240 (565)
T TIGR01816 161 ETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLITEGCRGEGGILI 240 (565)
T ss_pred CCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCCceEEeccccCCceEEE
Confidence 78998899999999999999999999999999999999999999999999999999999887778889999999999999
Q ss_pred cCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCC
Q psy15089 317 NSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREP 396 (661)
Q Consensus 317 n~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~ 396 (661)
|.+|+|||++|+|...++.+||+++++|..++.+++|+.+..+.+|+|+++++++.|.+++|.+++.+..+.|+|+.++|
T Consensus 241 n~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~~ 320 (565)
T TIGR01816 241 NANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPGISETARTFAGVDPVKDP 320 (565)
T ss_pred CCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhhHHHHHHHHcCCCCCCCc
Confidence 99999999999998778999999999999999888876544457999999999999999999999988766799999999
Q ss_pred eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy15089 397 IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGA 476 (661)
Q Consensus 397 i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~ 476 (661)
+|+.|++||+||||.||.+++|++...+..|+||||||||||+|+|+||+||||||+|++|+|||++||++|+++++...
T Consensus 321 i~v~p~~h~t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~~~~ 400 (565)
T TIGR01816 321 IPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGS 400 (565)
T ss_pred EEeeeeeeeecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999988752234689999999999998899999999999999999999999999999875321
Q ss_pred CCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccc
Q psy15089 477 PIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWN 556 (661)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~ 556 (661)
..+.......++...++..+...+++.+|.+++++||++||+++|++|++++|++|+.+|++|+++++.+.+.|.+..+|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~ 480 (565)
T TIGR01816 401 DVKPMPPNAGEESVMRLDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSKVWN 480 (565)
T ss_pred cccccccchhHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 11122222222333334444444455678899999999999999999999999999999999999888887777767789
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEE
Q psy15089 557 TDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKI 636 (661)
Q Consensus 557 ~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~ 636 (661)
++|++++|++||+++|+++++|||+|+||||+|||+|||++||+ +|+||++++++.++|++.+
T Consensus 481 ~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~-----------------~~~~~~~~~~~~~~~~~~~ 543 (565)
T TIGR01816 481 TDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDE-----------------NWLKHTLSYVDINTGKVLL 543 (565)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCcc-----------------ccccEEEEEecCCCCcceE
Confidence 99999999999999999999999999999999999999999998 9999999877644589999
Q ss_pred EeecccccccCcccccccCCCCCCC
Q psy15089 637 YYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 637 ~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+++|+...++ .+..++|..|.|
T Consensus 544 ~~~~~~~~~~---~~~~~~~~~~~~ 565 (565)
T TIGR01816 544 SYKPVIFKPL---TVADFEPKKRVY 565 (565)
T ss_pred Eecccccccc---cccccCCCCCCC
Confidence 9999986532 234688999988
No 21
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.5e-96 Score=831.78 Aligned_cols=564 Identities=37% Similarity=0.588 Sum_probs=485.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-CCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-EEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
.++||||||+|+||++||+.|++.|++|+||||....+++|.+++||+++..+.. ..|+++.|+.|+++.+.+++|+++
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~ 86 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM 86 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence 5699999999999999999999999999999999888889999999999887643 458899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-------
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY------- 208 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~------- 208 (661)
++.+++++++.++||+++|++|++.++|.+....++||++ +|+++..+.+|..++..|.+.+++.
T Consensus 87 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~ 158 (626)
T PRK07803 87 AELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTY--------PRLAHVGDRTGLELIRTLQQKIVSLQQEDHAE 158 (626)
T ss_pred HHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCccc--------CeEEecCCCcHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999998888877777788765 6787778889999999999988776
Q ss_pred -C-----cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCC
Q psy15089 209 -D-----CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGL 282 (661)
Q Consensus 209 -g-----v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa 282 (661)
| |+++.++.+++|+.++++|+|+.+.+..+|+...|.||+|||||||++.+|..++++..++|||++||+++||
T Consensus 159 ~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa 238 (626)
T PRK07803 159 LGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGA 238 (626)
T ss_pred ccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCC
Confidence 6 9999999999999989999999988777888888999999999999999999888999999999999999999
Q ss_pred ccCCCcccccccccccC----CCceecccccCCCcEEEcCCCCccccccccc-------------------------ccc
Q psy15089 283 PNEDLEFVQFHPTGIYG----AGCLITEGCRGEGGYLINSEGERFMERYAPV-------------------------AKD 333 (661)
Q Consensus 283 ~l~~~ef~q~~p~~~~~----~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~-------------------------~~~ 333 (661)
.+.+|||+||||+++.. .+.+++++++++|++|+|.+|+|||++|.|. ..+
T Consensus 239 ~l~~me~~q~~Pt~~~~~~~~~~~li~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (626)
T PRK07803 239 TLINMEFVQFHPTGMVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNNRRPPE 318 (626)
T ss_pred cEeCCcceeecccccccCCCcCceEEeeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhcccccccccc
Confidence 99999999999997642 3578899999999999999999999998765 247
Q ss_pred ccchhHhhhhHHHHHHhcCCCCCCCCcEEEeC-CCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCccc
Q psy15089 334 LASRDVVSRSMTIEIREGRGVGPDKDHVYLQL-HHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPT 412 (661)
Q Consensus 334 l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~-~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~v 412 (661)
+.|||++++++..++.+|+|. ..+++|+|+ ++++++.|++++|.++..+..+.|+|+.++|+|+.|++||+||||+|
T Consensus 319 l~prd~v~~ai~~e~~~g~g~--~~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GGi~v 396 (626)
T PRK07803 319 LLPRDEVARAINSEVKAGRGS--PHGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGVEV 396 (626)
T ss_pred cccHHHHHHHHHHHHHhcCCC--CCCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCCEEE
Confidence 889999999999999998874 345699999 78999999999999666665557999999999999999999999999
Q ss_pred CCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhh
Q psy15089 413 NYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVAN 492 (661)
Q Consensus 413 d~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~ 492 (661)
|.+++ .|+||||||||||+ +|+||+|||+||||++|+|||++||++|+++++.....+...........++
T Consensus 397 d~~~~--------~t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~ 467 (626)
T PRK07803 397 DPDTG--------AATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAARE 467 (626)
T ss_pred cCCCC--------eeecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHHHHHH
Confidence 98875 38999999999986 5899999999999999999999999999998743211111111112222222
Q ss_pred hhHhhhc-CCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHH
Q psy15089 493 LDWVRHA-KGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMIN 571 (661)
Q Consensus 493 ~~~~~~~-~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~ 571 (661)
+...+.. .++.++.+++++||++||+++||+|++++|++||.+|++|++++.++.+.+. ..+|.++.+++|++||+++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~ 546 (626)
T PRK07803 468 ALAPFERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGH-RQYNPGWHLALDLRNMLLV 546 (626)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcc-cccchHHHHHHHHHhHHHH
Confidence 2222221 2246788999999999999999999999999999999999998877766543 5568888999999999999
Q ss_pred HHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCCCccccccceEEEEe-eCCCCceEEEee---cccccccC
Q psy15089 572 AIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDV-DVNTGKVKIYYR---PVIDKTLD 647 (661)
Q Consensus 572 a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~g~~~~~~~---~v~~~~~~ 647 (661)
|+++++|||+|+||||+|||.|||++|+ +|++|+++.. |+++|+++++++ |++..+|+
T Consensus 547 a~~~~~aal~R~ESRG~H~R~D~P~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 608 (626)
T PRK07803 547 SECVARAALERTESRGGHTRDDHPGMDP------------------EWRRINLVCRADPVGGHVTVTRQPQPPMRPDLLA 608 (626)
T ss_pred HHHHHHHHHhCCCCcccEeCCCCCccCh------------------hhhceEEEEecCCCCCceEEEEccCCCcChhHHh
Confidence 9999999999999999999999999986 5999988554 457899999999 66666676
Q ss_pred cccccccCCCCCCC
Q psy15089 648 AKECATIAPAIRSY 661 (661)
Q Consensus 648 ~~~~~~~~~~~r~y 661 (661)
...+..| +|+|
T Consensus 609 ~~~~~~~---~~~~ 619 (626)
T PRK07803 609 LFEISEL---EKYY 619 (626)
T ss_pred hhhhhhh---heec
Confidence 6555555 6665
No 22
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=100.00 E-value=1.1e-94 Score=814.85 Aligned_cols=563 Identities=55% Similarity=0.904 Sum_probs=492.8
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-CCCCHHHHHHHHHhccCCCCCHHHHHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-EEDDWHWHMYDTVKGSDWLGDQDAIHY 138 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~~~~~~~ 138 (661)
||||||+|+||++||+.|+++|++|+||||....++++..++||+++..+.. ..|++++|+.|+++.+.+++|+++++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999999999999888888889999998876543 357889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEE
Q psy15089 139 MTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFA 218 (661)
Q Consensus 139 ~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v 218 (661)
+++++++.++||+++|++|.+.++|.+....+++|+. +|.++..+.+|..+...|.+.+++.|+++++++.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v 152 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSK--------DRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFA 152 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeecccccccc--------CeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEE
Confidence 9999999999999999999988888766566777654 56777778889999999999999899999999999
Q ss_pred EEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccccccccc
Q psy15089 219 LDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIY 298 (661)
Q Consensus 219 ~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~ 298 (661)
++|+.++|+|+||.+.+..+|+...|.||.||+||||++.+|..+++++.++|||+.||+++||.+.+|||+||||+.+.
T Consensus 153 ~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~~ 232 (566)
T TIGR01812 153 LDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLY 232 (566)
T ss_pred EEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeeeC
Confidence 99999999999999987678887889999999999999999998888999999999999999999999999999999887
Q ss_pred CCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCC-CCCcEEEeCCCCChHHHHhHh
Q psy15089 299 GAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGP-DKDHVYLQLHHLPPEDLHQRL 377 (661)
Q Consensus 299 ~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~-~~~~v~~d~~~~~~~~l~~~~ 377 (661)
+.+.+++++++++|++++|.+|+|||++|+|...++.+|+++++++..++.++++..+ ....+|+|+++++++.+.+++
T Consensus 233 ~~~~~~~e~~~~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~~~~~~~~~~ 312 (566)
T TIGR01812 233 PSGILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEKIEERL 312 (566)
T ss_pred CCCcEEeccccCCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHHHc
Confidence 7778889999999999999999999999998777899999999999999988776422 224599999999988888999
Q ss_pred hhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhH
Q psy15089 378 PGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDL 457 (661)
Q Consensus 378 ~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a 457 (661)
+.+.+.+....|+|+.++++|+.|..||++|||+||.++||++. |+||||||||||+|+|+||+|||+||+|++|
T Consensus 313 ~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~-----t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a 387 (566)
T TIGR01812 313 PQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICE-----TIVKGLFAAGECACVSVHGANRLGGNSLLEL 387 (566)
T ss_pred hHHHHHHHHHcCCCCCCCceeeehhhcccCCCeEECcCcccccC-----cccCCeeecccccccCcCcccccchhhHHHH
Confidence 99988887657999999999999999999999999999998763 8999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHH
Q psy15089 458 VVFGRACAKTIAEENKPGA-PIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKM 536 (661)
Q Consensus 458 ~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 536 (661)
+|||++||++|+++++... ..+.+.....+...+.+..+...+++.++.+++++||++||+++|++|++++|++++++|
T Consensus 388 ~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~al~~l 467 (566)
T TIGR01812 388 VVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVDEI 467 (566)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHHHHHHHH
Confidence 9999999999998864311 111111111122222233333223456788999999999999999999999999999999
Q ss_pred HHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCCCCcc
Q psy15089 537 AALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIE 616 (661)
Q Consensus 537 ~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~~~~~ 616 (661)
++|++++..+.+.+.+..||++|++++|++||+++|+++++|||+|+||||+|||.|||++||+
T Consensus 468 ~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~---------------- 531 (566)
T TIGR01812 468 EELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDE---------------- 531 (566)
T ss_pred HHHHHHHHhhcccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcc----------------
Confidence 9999888877777777778999999999999999999999999999999999999999999998
Q ss_pred ccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 617 EHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 617 ~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+|+||++++++. ++++++.++|+.++ .++|..|.|
T Consensus 532 -~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~ 566 (566)
T TIGR01812 532 -NWLKHTLAYYDN-PGTPRLEYKPVTIT--------KYEPAERKY 566 (566)
T ss_pred -cccceEEEEecC-CCcceeeeccceec--------ccCCCCCCC
Confidence 899999887653 57899999998643 477888877
No 23
>PLN02815 L-aspartate oxidase
Probab=100.00 E-value=1.1e-93 Score=798.62 Aligned_cols=527 Identities=35% Similarity=0.516 Sum_probs=448.7
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
..++||||||+|.|||+||++|++.| +|+||||....++++.+++||+++..+ ..|+++.|+.|+++.+.+++|+++
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~--~~Ds~e~~~~d~~~~g~~~~d~~l 103 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD--PSDSVESHMRDTIVAGAFLCDEET 103 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCC--CCCCHHHHHHHHHHhccCCCcHHH
Confidence 45799999999999999999999999 999999999888999999999987764 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFV 214 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~~ 214 (661)
++.+++++++.++||+++|++|++.++|.+....++||++ +|+++..+.+|..++..|.+.+++. ||+++.
T Consensus 104 v~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~--------~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~ 175 (594)
T PLN02815 104 VRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLEAVKNDPNITFFE 175 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCcc--------CceeecCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999999988888876667777764 5777777889999999999998775 899999
Q ss_pred eEEEEEEEEe-CC---EEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccc
Q psy15089 215 EYFALDLIIE-NG---ECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290 (661)
Q Consensus 215 ~~~v~~l~~~-~g---~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~ 290 (661)
++.+++|+++ +| +|+||++++..+|+.+.|.||+|||||||++++|..+++++.+||||++||+++||.+.||||+
T Consensus 176 ~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefv 255 (594)
T PLN02815 176 HHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFV 255 (594)
T ss_pred ceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCcee
Confidence 9999999986 34 3999999887789888999999999999999999989999999999999999999999999999
Q ss_pred ccccccccCC------------CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCC
Q psy15089 291 QFHPTGIYGA------------GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDK 358 (661)
Q Consensus 291 q~~p~~~~~~------------g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~ 358 (661)
||||+.+++. .++++++++++|++++|.+|+|||++|++. .++.+||+++++|..++..+.+
T Consensus 256 QfhPt~~~~~~~~~~~~~~~~~~~l~~ea~rg~G~ilvN~~GeRF~~~y~~~-~ela~rd~va~ai~~e~~~~~~----- 329 (594)
T PLN02815 256 QFHPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 329 (594)
T ss_pred EEeeeeecCCCccccccccccccceeehhhccCCcEEECCCCCCCccccCcc-cccCChHHHHHHHHHHHHhcCC-----
Confidence 9999887543 267889999999999999999999999875 4899999999999999876532
Q ss_pred CcEEEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccc
Q psy15089 359 DHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEA 438 (661)
Q Consensus 359 ~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~ 438 (661)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|+||.|++||+||||.||.+++ |+||||||||||
T Consensus 330 ~~v~lD~~~~~~~~~~~~~p~i~~~~~~-~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~---------t~IpGLyAaGE~ 399 (594)
T PLN02815 330 KYVLLDISHKPREEILSHFPNIAAECLK-RGLDITKQPIPVVPAAHYMCGGVRTGLQGE---------TNVQGLYAAGEV 399 (594)
T ss_pred CEEEEeCCCCCHHHHHHHCHHHHHHHHH-hCcCCCCCceeeechhcEeCCCeeECCCCc---------eecCCEEecccc
Confidence 3599999999988899999999888765 699999999999999999999999999886 899999999999
Q ss_pred cccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhh-HhhhhHhhhcCCCCCHHHHHHHHHHHhc
Q psy15089 439 SCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESS-VANLDWVRHAKGDITTADLRLTMQKTMQ 517 (661)
Q Consensus 439 a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 517 (661)
+|+|+||+|||+||||++|+|||++||++|+++...............+.. ..........+....+.+++.+||++||
T Consensus 400 a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 479 (594)
T PLN02815 400 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMW 479 (594)
T ss_pred cccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHHHH
Confidence 988999999999999999999999999999877532110000000000000 0000000000111236788899999999
Q ss_pred ccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCC
Q psy15089 518 TYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVR 597 (661)
Q Consensus 518 ~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~ 597 (661)
+++||+|++++|++++++|++|++++..... .....+|.++++++|++||+++|+++++|||+|+||||+|||+|||++
T Consensus 480 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~ 558 (594)
T PLN02815 480 NYVGIVRSTERLETAERKLEELEAEWEAILF-RHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPEL 558 (594)
T ss_pred hcCCEEEcHHHHHHHHHHHHHHHHHHHHhhc-ccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCCcc
Confidence 9999999999999999999999987754321 111122568899999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCccccccceEEEEee
Q psy15089 598 VDELDYAKPLEGQVPKPIEEHWRKHTLTDVD 628 (661)
Q Consensus 598 dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 628 (661)
||+ |++|++++..
T Consensus 559 ~~~------------------~~~~~~~~~~ 571 (594)
T PLN02815 559 VES------------------ERKPTVIFPS 571 (594)
T ss_pred Chh------------------HhcCEEEeec
Confidence 986 9988777653
No 24
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=7e-92 Score=782.03 Aligned_cols=520 Identities=35% Similarity=0.520 Sum_probs=443.8
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
+.++||||||+|.|||+||++|++ |++|+||||....+++|.+++||+++..+ ..|+++.|+.|+++.+.+++|+++
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~--~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIA--PDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceeccc--CCCCHHHHHHHHHHhcCCCCCHHH
Confidence 456999999999999999999975 99999999998888899999999988765 478899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFV 214 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~~ 214 (661)
++.+++++++.++||+++|++|++. ++.+....+++|+. +|.++..+.+|..++..|.+.+++. ||+++.
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~-~~~~~~~~~~g~s~--------~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~ 154 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRH-GQHLALTLEAAHSR--------PRVLHAADTTGRAIVTTLTEQVLQRPNIEIIS 154 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecC-CCceeeeccccccc--------CeEEEeCCCChHHHHHHHHHHHhhcCCcEEEE
Confidence 9999999999999999999999875 44333344566553 5777778889999999999988765 899999
Q ss_pred eEEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccc
Q psy15089 215 EYFALDLIIEN--GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292 (661)
Q Consensus 215 ~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~ 292 (661)
++.+++|+.++ |+|+||++. .+|+.+.|.||+|||||||++++|..+++++.++|||++||+++||.+.+|||+||
T Consensus 155 ~~~v~~Li~~~~~g~v~Gv~~~--~~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~ 232 (553)
T PRK07395 155 QALALSLWLEPETGRCQGISLL--YQGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQF 232 (553)
T ss_pred CcChhhheecCCCCEEEEEEEE--ECCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeE
Confidence 99999999873 899999876 36777789999999999999999988889999999999999999999999999999
Q ss_pred ccccccCC---CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCC
Q psy15089 293 HPTGIYGA---GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLP 369 (661)
Q Consensus 293 ~p~~~~~~---g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 369 (661)
||+.+..+ .++++++++++|++++|.+|+|||.+|+|. .++.+||+++++|..++.++. .....+.||+|+++++
T Consensus 233 hpt~~~~~~~~~~l~~e~~rg~g~ilvn~~G~RF~~~y~~~-~El~~rd~v~~ai~~e~~~~~-~~~~~~~v~ld~~~~~ 310 (553)
T PRK07395 233 HPTALTKPGAPRFLISEAVRGEGAHLVDAQGRRFAFDYHPA-GELAPRDVVSRAIFSHLQKTA-TDPATAHVWLDLRPIP 310 (553)
T ss_pred EeeeecCCCCCceeeehhccCCcEEEECCCCCCCccccCcc-cccccHHHHHHHHHHHHHhcC-CCCCCceEEEeccccc
Confidence 99877543 368889999999999999999999999997 589999999999999987652 2223457999999999
Q ss_pred hHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCcc
Q psy15089 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449 (661)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrl 449 (661)
++.+.+++|.+.+.+.. .|+|+.++|+||.|++||+||||+||.+++ |+||||||||||+|+|+||+|||
T Consensus 311 ~~~~~~~~p~i~~~~~~-~giD~~~~~i~v~P~~h~~~GGi~vd~~~~---------t~I~GLyAaGE~a~~G~hGanRL 380 (553)
T PRK07395 311 AERIRRRFPNIIRVCQK-WGIDVFQEPIPVAPAAHYWMGGVVTDLNNQ---------TSIPGLYAVGETASTGVHGANRL 380 (553)
T ss_pred hHHHHHhhHHHHHHHHH-cCCCcCCCEeEEecceeecCCCeeECCCCc---------ccCCCEEECccccccCCCcccch
Confidence 99999999999998876 699999999999999999999999999886 99999999999998899999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHH
Q psy15089 450 GANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETL 529 (661)
Q Consensus 450 gg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L 529 (661)
|||||++|+|||++||+.+++..... .+.... .........+ .++...+.+++++||++||+++||+|++++|
T Consensus 381 ~gnsl~e~lvfG~~a~~~~~~~~~~~--~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L 453 (553)
T PRK07395 381 ASNSLLECLVFAAQLAQLELPIEPPA--SPDLPP---ISFIIDASQW--KNEQEQIQRIRQELPELVWQSAGICREADTL 453 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC--CCcccc---hhhHHHHhhh--hccCCCHHHHHHHHHHHHHhcccEEEcHHHH
Confidence 99999999999999999987642111 111000 0000000011 1223457889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccC--------cccc-----chhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCC
Q psy15089 530 QEGCNKMAALYKDLAHLKVFDR--------SLIW-----NTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKV 596 (661)
Q Consensus 530 ~~al~~l~~l~~~~~~~~~~d~--------~~~~-----~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~ 596 (661)
++++++|++|++++.++...+. +..| |.+|..++|++||+++|+++++|||+|+||||+|||+|||+
T Consensus 454 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D~p~ 533 (553)
T PRK07395 454 ERAIAQVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLDYPQ 533 (553)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCc
Confidence 9999999999988876655441 1222 24588889999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCCCCccccccceEEEE
Q psy15089 597 RVDELDYAKPLEGQVPKPIEEHWRKHTLTD 626 (661)
Q Consensus 597 ~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~ 626 (661)
+|+ +|++|++++
T Consensus 534 ~~~------------------~~~~~~~~~ 545 (553)
T PRK07395 534 TDP------------------AWQVHTLVQ 545 (553)
T ss_pred cCh------------------hhhceEEEE
Confidence 876 499999876
No 25
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.4e-90 Score=772.76 Aligned_cols=523 Identities=40% Similarity=0.627 Sum_probs=454.7
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC-CCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP-TRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~-~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
..++||||||+|.|||+||+.| +.|++|+||||... .++++..++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~--~~d~~~~~~~d~~~~~~~~~d~~ 81 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFEKHFEDTMKGGAYLNDPK 81 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCC--CCCCHHHHHHHHHHHhcCCCCHH
Confidence 4579999999999999999999 99999999999865 45677888899987764 56889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
+++.+++++++.++||+++|++|.+.++|.+....++++++ +|.++..+.+|..++..|.+.+++.||++++
T Consensus 82 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~ 153 (543)
T PRK06263 82 LVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSF--------NRTCYAGDRTGHEMMMGLMEYLIKERIKILE 153 (543)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEc--------CeEEECCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999999999988888766666677654 5777777888999999999999889999999
Q ss_pred eEEEEEEEEeCC-EEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccc
Q psy15089 215 EYFALDLIIENG-ECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293 (661)
Q Consensus 215 ~~~v~~l~~~~g-~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~ 293 (661)
++.+++|+.+++ +|+|+++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+|||
T Consensus 154 ~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~ 233 (543)
T PRK06263 154 EVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFH 233 (543)
T ss_pred CeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEe
Confidence 999999999876 4999998876788888899999999999999999888899999999999999999999999999999
Q ss_pred ccccc----CCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCC
Q psy15089 294 PTGIY----GAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLP 369 (661)
Q Consensus 294 p~~~~----~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 369 (661)
|+.+. ..+.+++++++++|++++|.+|+||+++|+|...++.+|+++++++..++..++|. ..+.+|+|+++++
T Consensus 234 p~~~~~~~~~~~~~~~~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~--~~~~~~ld~~~~~ 311 (543)
T PRK06263 234 PTGMVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGT--NHGGVYLDVTHLP 311 (543)
T ss_pred cceeccCCCCCceEEeeeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCC--CCceEEEECCCCC
Confidence 98764 34567888888999999999999999999997778999999999999999888774 2346999999999
Q ss_pred hHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCcc
Q psy15089 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449 (661)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrl 449 (661)
++.++++++.+.+.+.. .|+|+.++|+|+.|..|+++|||.||.+++ |+|||||||||++ +|+||+||+
T Consensus 312 ~~~l~~~~~~~~~~~~~-~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~---------t~IpGLyAaGE~~-gg~hG~~rl 380 (543)
T PRK06263 312 DEVIEEKLETMLEQFLD-VGVDIRKEPMEVAPTAHHFMGGIRINEDCE---------TNIPGLFACGEVA-GGVHGANRL 380 (543)
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCCCCEEEeccccEecCCEEECCCCc---------ccCCCeEeccccc-cCCCCCCcc
Confidence 99999999985544433 699999999999999999999999999886 9999999999986 689999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhh-hcCCCCCHHHHHHHHHHHhcccceeeeCHHH
Q psy15089 450 GANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVR-HAKGDITTADLRLTMQKTMQTYAAVFRTQET 528 (661)
Q Consensus 450 gg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~ 528 (661)
+||+|++|+|||++||++|+++++.... +.... ......+++..+. ..+++.+|.+++++||++||+++|++|++++
T Consensus 381 gG~sl~~a~v~Gr~Ag~~aa~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 458 (543)
T PRK06263 381 GGNALADTQVFGAIAGKSAAKNAENNEF-KKVNR-SVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKG 458 (543)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhhhcCC-Ccchh-hhhhhHHHHHHHhhhcccCCCHHHHHHHHHHHHHhhCcEEEcHHH
Confidence 9999999999999999999998643211 11111 1111222233321 2334678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCC
Q psy15089 529 LQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLE 608 (661)
Q Consensus 529 L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~ 608 (661)
|+++|.+|++|+++++.+.+.+ .++|++++|++||+++|+++++|||+|+||||+|||.|||++||+
T Consensus 459 L~~al~~l~~l~~~~~~~~~~~-----~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~-------- 525 (543)
T PRK06263 459 LKKALEEINELKEKLKDLKVNG-----IVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETNDE-------- 525 (543)
T ss_pred HHHHHHHHHHHHHHHHhccccc-----chhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccChh--------
Confidence 9999999999999988887766 388999999999999999999999999999999999999999884
Q ss_pred CCCCCCccccccceEEEEe
Q psy15089 609 GQVPKPIEEHWRKHTLTDV 627 (661)
Q Consensus 609 ~~~~~~~~~~w~~~~~~~~ 627 (661)
|+||++++.
T Consensus 526 ----------~~~~~~~~~ 534 (543)
T PRK06263 526 ----------WFGNIILNK 534 (543)
T ss_pred ----------hcCeEEecC
Confidence 999998764
No 26
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=5e-88 Score=752.68 Aligned_cols=505 Identities=34% Similarity=0.513 Sum_probs=428.6
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
+.++||||||+|+|||+||++|++. ++|+||||....+++|.+++||+++..+ ..|+++.|+.|+++.+.+++|+++
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~--~~ds~e~~~~d~~~~g~~~~d~~~ 82 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD--ETDSIESHVEDTLIAGAGLCDEDA 82 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccC--CCccHHHHHHHHHHHccCCCCHHH
Confidence 4569999999999999999999987 8999999998888889999999987765 568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCC--C--cccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-Cc
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTD--G--KIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DC 210 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~--g--~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv 210 (661)
++.+++++++.++||+++|++|++.++ | .+....++||+. .|+++..+.+|..+...|.+++++. +|
T Consensus 83 v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~~~I 154 (536)
T PRK09077 83 VRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSH--------RRILHAADATGKAVQTTLVERARNHPNI 154 (536)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccC--------CceEecCCCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999988655 2 344445666653 5778888889999999999988775 89
Q ss_pred EEEEeEEEEEEEEeC------CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCcc
Q psy15089 211 NYFVEYFALDLIIEN------GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPN 284 (661)
Q Consensus 211 ~i~~~~~v~~l~~~~------g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l 284 (661)
+++.++.+++|+.++ ++|+||.+.+..+|+...|.||.|||||||++++|..+++++.+||||+.||+++||.+
T Consensus 155 ~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l 234 (536)
T PRK09077 155 TVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRV 234 (536)
T ss_pred EEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcC
Confidence 999999999999864 89999999887788888899999999999999999988999999999999999999999
Q ss_pred CCCcccccccccccCC---CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcE
Q psy15089 285 EDLEFVQFHPTGIYGA---GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHV 361 (661)
Q Consensus 285 ~~~ef~q~~p~~~~~~---g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v 361 (661)
.||||+||||+.++.+ +++++++++++|++++|.+|+|||++|++. .++++||+++++|..++... | .+.+
T Consensus 235 ~~me~~q~~pt~~~~~~~~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~-~el~~rd~v~~ai~~~~~~~-g----~~~v 308 (536)
T PRK09077 235 ANMEFNQFHPTCLYHPQARSFLITEALRGEGAYLKLPDGTRFMPDFDER-AELAPRDIVARAIDHEMKRL-G----ADCV 308 (536)
T ss_pred cCccceeEecceecCCCCCceeecHHHcCCCCEEECCCCCCcccccCcc-cccCchhHHHHHHHHHHHhc-C----CCeE
Confidence 9999999999987543 467889999999999999999999999885 48999999999999888652 2 2359
Q ss_pred EEeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeecccccc
Q psy15089 362 YLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCS 441 (661)
Q Consensus 362 ~~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~ 441 (661)
|+|+++++++.+++++|.+.+.+.. .|+|+.++|+||.|.+||+||||+||.+++ |+||||||||||+|+
T Consensus 309 ~ld~~~~~~~~~~~~~~~~~~~~~~-~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~---------t~I~GLyAaGE~a~~ 378 (536)
T PRK09077 309 YLDISHKPADFIRQHFPTIYERCLE-LGIDITKEPIPVVPAAHYTCGGVMVDLHGR---------TDLDGLYAIGEVSYT 378 (536)
T ss_pred EEECCCCcHHHHHHHChHHHHHHHH-hCcCCCCCceeeeeeeeEecCCeeECCCCc---------cccCCEEeccccccc
Confidence 9999999988888899998887765 699999999999999999999999999886 999999999999888
Q ss_pred CCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccce
Q psy15089 442 SVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAA 521 (661)
Q Consensus 442 g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 521 (661)
|+||+||||||||++|+|||++||++|+++............ ... ..+. .......+.+..++||++||+++|
T Consensus 379 g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~-~~~---~~~~---~~~~~~~~~~~~~~l~~~m~~~~g 451 (536)
T PRK09077 379 GLHGANRMASNSLLECLVYGRSAAEDILSRLPKAPMPPTLPA-WDE---SRVT---DSDEEVVIQHNWHELRLFMWDYVG 451 (536)
T ss_pred ccCCCccchhhhHHHHHHHHHHHHHHHHHhhcccCcccccch-hhh---hhhh---ccccccchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999987532110111110 000 0000 001112234456799999999999
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccc
Q psy15089 522 VFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDE 600 (661)
Q Consensus 522 ~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~ 600 (661)
|+|++++|++++++|++|++++....... . ....++|++|||++|+++++|||+|+||||+|||.|||++||+
T Consensus 452 i~R~~~~L~~al~~l~~l~~~~~~~~~~~-----~-~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~ 524 (536)
T PRK09077 452 IVRTTKRLERALHRIRLLQQEIDEYYANF-----R-VSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPE 524 (536)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHhhhc-----c-cCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCcccccc
Confidence 99999999999999999987764322110 0 1124689999999999999999999999999999999999986
No 27
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.5e-87 Score=747.03 Aligned_cols=511 Identities=36% Similarity=0.505 Sum_probs=441.8
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCH
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQ 133 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~ 133 (661)
.++.++||||||+|+|||+||++|++.|++|+||||....+++|..++||+++..+ ..|+++.|+.|+++.+.+++|+
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~--~~ds~e~~~~d~~~~g~g~~d~ 89 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLD--PGDSPEAHVADTLVAGAGLCDP 89 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccC--CCCCHHHHHHHHHHhcCCCCCH
Confidence 45678999999999999999999999999999999998888889999999988775 5788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeec-cCCcHHHHHHHHHHHHHhCCcEE
Q psy15089 134 DAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV-ADRTGHSLLHTLYGQSLRYDCNY 212 (661)
Q Consensus 134 ~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-~~~~g~~l~~~L~~~a~~~gv~i 212 (661)
++++.+++++++.++||+++|++|++..+|.+....+++|+. .|.++. .+.+|..+.+.|.+++++.||++
T Consensus 90 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~--------~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i 161 (541)
T PRK07804 90 DAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSR--------RRIVHAGGDATGAEVQRALDAAVRADPLDI 161 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeec--------CeeEecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999999998888876666777764 455555 46789999999999999999999
Q ss_pred EEeEEEEEEEEeC-CEEEEEEEEEcC---CCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCc
Q psy15089 213 FVEYFALDLIIEN-GECKGVIALCLE---DGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLE 288 (661)
Q Consensus 213 ~~~~~v~~l~~~~-g~v~Gv~~~~~~---~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~e 288 (661)
+.++.+++|+.++ |+|+|+.+.+.. ++....|.||.||+||||++.+|..+++++.+||||+.||+++|+.+.+||
T Consensus 162 ~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me 241 (541)
T PRK07804 162 REHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLE 241 (541)
T ss_pred EECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCc
Confidence 9999999999875 799999887431 233467999999999999999999999999999999999999999999999
Q ss_pred ccccccccccC------CCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEE
Q psy15089 289 FVQFHPTGIYG------AGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVY 362 (661)
Q Consensus 289 f~q~~p~~~~~------~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~ 362 (661)
|+||||+.+.. ...+++++++++|++++|.+|+|||++|+|. .++.+||++++++..++.++ + ...+|
T Consensus 242 ~~q~~pt~~~~~~~~~~~~~l~~~~~r~~g~~lvn~~G~RF~~~~~~~-~E~a~rd~v~~ai~~~~~~~-g----~~~v~ 315 (541)
T PRK07804 242 FVQFHPTVLFLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPL-ADLAPRDVVAKAIDRRMKAT-G----DDHVY 315 (541)
T ss_pred ceeEecceecCCcccccccceechhhcCCceEEECCCCCCCccccCcc-cccCcHHHHHHHHHHHHHhc-C----CCEEE
Confidence 99999987652 2357888999999999999999999999986 48999999999999988652 2 23599
Q ss_pred EeCCCCChHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccC
Q psy15089 363 LQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSS 442 (661)
Q Consensus 363 ~d~~~~~~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g 442 (661)
+|.++ .+.+..++|.+.+.+.. .|+|+.++++||.|..||+||||.||.+++ |+||||||||||+|+|
T Consensus 316 lD~~~--~~~~~~~~p~i~~~~~~-~gid~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~i~GLyAaGe~~~~g 383 (541)
T PRK07804 316 LDARG--IEGFARRFPTITASCRA-AGIDPVRQPIPVAPAAHYSCGGVVTDVYGR---------TSVPGLYAAGEVACTG 383 (541)
T ss_pred EeCcc--HHHHHHHhhHHHHHHHH-hCcCCcCCeEEEEHHHhhcCCCEEECCCCc---------ccCCCeEEcccccccc
Confidence 99884 46778889999888765 799999999999999999999999999886 9999999999998889
Q ss_pred CCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhccccee
Q psy15089 443 VHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAV 522 (661)
Q Consensus 443 ~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~ 522 (661)
+||+||++||++++|++||++||++|+++.+... .+. .... ...+.+.++.+++++||++||+++|+
T Consensus 384 ~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~~~~~-~~~----~~~~--------~~~~~~~~~~~~~~~l~~~m~~~~gi 450 (541)
T PRK07804 384 VHGANRLASNSLLEGLVVGERAGAAAAAHAAAAG-RPR----ATPA--------VGPEPGLLPALDRAELQRAMTRGAGV 450 (541)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHhhcccC-ccc----cchh--------hcccccCchHHHHHHHHHHHHhcCCe
Confidence 9999999999999999999999999998764321 110 0000 01123456888999999999999999
Q ss_pred eeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccc
Q psy15089 523 FRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELD 602 (661)
Q Consensus 523 ~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~ 602 (661)
+|++++|++|+++|+++.... .+++..++|++||+++|+++++|||+|+||||+|||+|||++||+
T Consensus 451 ~R~~~~L~~al~~l~~~~~~~------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~-- 516 (541)
T PRK07804 451 LRSAAGLARAADRLAAGAPAR------------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDDE-- 516 (541)
T ss_pred EEcHHHHHHHHHHHHHHHhhc------------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccChh--
Confidence 999999999999998864211 134667889999999999999999999999999999999999885
Q ss_pred cCCCCCCCCCCCccccccceEEEEeeCCCCceEE
Q psy15089 603 YAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKI 636 (661)
Q Consensus 603 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~ 636 (661)
|+||++++++. ++.+++
T Consensus 517 ----------------~~~~~~~~~~~-~~~~~~ 533 (541)
T PRK07804 517 ----------------WARSIVVRLAD-DGNLVV 533 (541)
T ss_pred ----------------hhceEEEEEcC-CCCeee
Confidence 99999988764 566655
No 28
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.5e-86 Score=732.78 Aligned_cols=504 Identities=36% Similarity=0.550 Sum_probs=428.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.++||||||+|.|||+||++|++ |.+|+||||....+++|.+++||+++... +.|+++.|+.|+++.+.+++|++++
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~--~~ds~e~~~~d~~~~g~~~~d~~~v 78 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVA--TYDSPNDHFEDTLVAGCHHNNERAV 78 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceeccc--CCCCHHHHHHHHHHhccCcCCHHHH
Confidence 36899999999999999999987 89999999999888999899999987765 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeec-cCCcHHHHHHHHHHHHHhCCcEEEEe
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV-ADRTGHSLLHTLYGQSLRYDCNYFVE 215 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-~~~~g~~l~~~L~~~a~~~gv~i~~~ 215 (661)
+.+++++++.++||+++|++|+++.+|.+....+++|+. +|.++. .+.+|..+++.|.+.++ .||+++++
T Consensus 79 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~ 149 (510)
T PRK08071 79 RYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRK--------RRILHAGGDATGKNLLEHLLQELV-PHVTVVEQ 149 (510)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccC--------CeEEecCCCCcHHHHHHHHHHHHh-cCCEEEEC
Confidence 999999999999999999999988888765555666654 466665 47789999999998876 69999999
Q ss_pred EEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccc
Q psy15089 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295 (661)
Q Consensus 216 ~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~ 295 (661)
+.+++|+.++++|+|+.+.+ .+|+.+.|+||.|||||||++.+|..+++++.++|||+.||+++|+.+.+|||+||||+
T Consensus 150 ~~v~~Li~~~g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~pt 228 (510)
T PRK08071 150 EMVIDLIIENGRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPT 228 (510)
T ss_pred eEhhheeecCCEEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEeee
Confidence 99999999899999999877 57888889999999999999999998999999999999999999999999999999998
Q ss_pred cccCCCc---eecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHH
Q psy15089 296 GIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPED 372 (661)
Q Consensus 296 ~~~~~g~---l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~ 372 (661)
.+...+. ++++.++++|++++|.+|+|||++|+|. .++.+||++++++..++.+++ .+|+|+++++ .
T Consensus 229 ~~~~~~~~~~li~e~~rg~g~~lvn~~G~RF~~~~~~~-~e~~~rd~v~~ai~~~~~~~~-------~v~ld~~~~~--~ 298 (510)
T PRK08071 229 MLYANGRCVGLVSEAVRGEGAVLINEDGRRFMMGIHPL-ADLAPRDVVARAIHEELLSGE-------KVYLNISSIQ--N 298 (510)
T ss_pred EecCCCccceeechhhcCCceEEECCCCCCCccccCcc-ccCCCHHHHHHHHHHHHHcCC-------eEEEeccchH--H
Confidence 7765542 7888889999999999999999999887 489999999999999987653 3999998875 4
Q ss_pred HHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchh
Q psy15089 373 LHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGAN 452 (661)
Q Consensus 373 l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~ 452 (661)
+.+++|.+.+.+.. .|+|+.++++||.|..||+||||+||.+++ |+||||||||||+|+|+||+|||+||
T Consensus 299 ~~~~~~~i~~~~~~-~gid~~~~~i~v~p~~h~~~GGi~vd~~~~---------t~I~GLyAaGE~a~~g~hGanrl~g~ 368 (510)
T PRK08071 299 FEERFPTISALCEK-NGVDIETKRIPVVPGAHFLMGGVKTNLDGE---------TSIPGLYAIGEVACTGVHGANRLASN 368 (510)
T ss_pred HHHHhhHHHHHHHH-hCcCCCCCceeEehhheEEcCCEEECCCCc---------ccCCCeEEcccccccccCCCcccchH
Confidence 67789998888775 699999999999999999999999999886 99999999999988899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHH
Q psy15089 453 SLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEG 532 (661)
Q Consensus 453 ~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~a 532 (661)
||++|+|||++||++|+++..+.. ..... ... . .. ...++...+++||++||+++|++|++++|++|
T Consensus 369 sl~~~~v~G~~Ag~~aa~~~~~~~---~~~~~--~~~-~---~~----~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a 435 (510)
T PRK08071 369 SLLEGLVFGKRAAEHILTKATKPR---LNPFA--EKE-K---KF----IVLNHLPTKEEIQEKMMKYVGIVRTEQSLSEA 435 (510)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCc---ccchh--hhh-h---hh----ccccchHHHHHHHHHHHhhccEEEcHHHHHHH
Confidence 999999999999999987753211 10000 000 0 00 00112234679999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccccccCCCCCCCCC
Q psy15089 533 CNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVP 612 (661)
Q Consensus 533 l~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~~~~~~~~~~~~~ 612 (661)
+.+|++|+.+....... .....++|++|||++|+++++|||+|+||||+|||+|||++ +
T Consensus 436 ~~~l~~l~~~~~~~~~~-------~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~--~------------ 494 (510)
T PRK08071 436 KRWLEKYGVRNMILDHD-------ALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR--N------------ 494 (510)
T ss_pred HHHHHHHHHhhhhcccc-------ccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc--c------------
Confidence 99999997332111111 01145789999999999999999999999999999999987 4
Q ss_pred CCccccccceEEEEeeCCCCceEE
Q psy15089 613 KPIEEHWRKHTLTDVDVNTGKVKI 636 (661)
Q Consensus 613 ~~~~~~w~~~~~~~~~~~~g~~~~ 636 (661)
|++|++++. ++++++
T Consensus 495 ------~~~~~~~~~---~~~~~~ 509 (510)
T PRK08071 495 ------WRGKEIVRT---KRKLQI 509 (510)
T ss_pred ------cCceEEEec---CCceee
Confidence 999987653 566654
No 29
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=5e-86 Score=732.08 Aligned_cols=477 Identities=35% Similarity=0.485 Sum_probs=416.8
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC-CCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP-TRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~-~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
..++||||||+|+|||+||++|+ |.+|+||||... .++++.+++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~--~~ds~e~~~~d~~~~~~g~~d~~ 82 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALG--PDDSPALHAADTLAAGAGLCDPA 82 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccC--CCCCHHHHHHHHHHhhCCCCCHH
Confidence 45799999999999999999997 569999999886 56678889999988765 46889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeec-cCCcHHHHHHHHHHHHHhC-CcEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV-ADRTGHSLLHTLYGQSLRY-DCNY 212 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-~~~~g~~l~~~L~~~a~~~-gv~i 212 (661)
+++.+++++++.++||+++|++|++.++|.+....+++|+. +|.++. .+.+|..++..|.+.+++. ||++
T Consensus 83 ~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~--------~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i 154 (513)
T PRK07512 83 VAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSR--------RRIVHVGGDGAGAAIMRALIAAVRATPSITV 154 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccC--------CcEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999988888766655666654 566665 5678999999999998875 8999
Q ss_pred EEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccc
Q psy15089 213 FVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292 (661)
Q Consensus 213 ~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~ 292 (661)
+.++.+++|+.++++|+|+.+.+ +++...|.||.|||||||++++|..+++++.+||||+.||+++||.+.+|||+||
T Consensus 155 ~~~~~v~~Li~~~g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~ 232 (513)
T PRK07512 155 LEGAEARRLLVDDGAVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQF 232 (513)
T ss_pred EECcChhheeecCCEEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEE
Confidence 99999999998889999998874 4445679999999999999999998899999999999999999999999999999
Q ss_pred ccccccC---CCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCC
Q psy15089 293 HPTGIYG---AGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLP 369 (661)
Q Consensus 293 ~p~~~~~---~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 369 (661)
||+.+.. ++.+++++++++|++++|.+|+|||++|+|. .++.+|+++++++..++.++++ +|+|.++++
T Consensus 233 ~Pt~~~~~~~~~~l~~~~~rg~g~~lvn~~G~RF~~~~~~~-~e~~~rd~v~~ai~~~~~~g~~-------v~ld~~~~~ 304 (513)
T PRK07512 233 HPTAIDIGRDPAPLATEALRGEGAILINEDGERFMADIHPG-AELAPRDVVARAVFAEIAAGRG-------AFLDARAAL 304 (513)
T ss_pred EeeeecCCCCCcceeehhhhCCceEEECCCCCChhhhcCCc-cccCcHHHHHHHHHHHHhcCCE-------EEEeccccc
Confidence 9987743 3568888999999999999999999999886 4899999999999999887654 899999988
Q ss_pred hHHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCcc
Q psy15089 370 PEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL 449 (661)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrl 449 (661)
.+.+.+++|.+.+.+.. .|+|+.++++||.|..||++|||.||.+++ |+||||||||||+|+|+||+|||
T Consensus 305 ~~~~~~~~~~i~~l~~~-~gid~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~I~GLyAaGE~a~~G~hGanrl 374 (513)
T PRK07512 305 GAHFATRFPTVYAACRS-AGIDPARQPIPVAPAAHYHMGGIAVDADGR---------SSLPGLWAAGEVASTGLHGANRL 374 (513)
T ss_pred hHHHHHHhhHHHHHHHH-hCcCCCCCceEEecccCEEcCCEEECCCCc---------cccCCEEecccccccCCCcccch
Confidence 88888899999888775 799999999999999999999999999886 99999999999988899999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHH
Q psy15089 450 GANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETL 529 (661)
Q Consensus 450 gg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L 529 (661)
+||||++|+|||++||++|+++..... .+ ..+.. . ...+.+..++||++||+++|++|++++|
T Consensus 375 ~gnsl~~~~v~G~~ag~~aa~~~~~~~-~~-~~~~~-------------~--~~~~~~~~~~l~~~m~~~~gi~R~~~~L 437 (513)
T PRK07512 375 ASNSLLEAVVFAARAAEDIAGTPAAAA-AP-LSAAA-------------A--PALDPADLALLRPIMSRHVGVLRDADGL 437 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-cc-ccccc-------------c--ccccHHHHHHHHHHHHhhccEEEcHHHH
Confidence 999999999999999999998754311 10 00000 0 0123345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccc
Q psy15089 530 QEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDE 600 (661)
Q Consensus 530 ~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~ 600 (661)
++++.+|++|+++. .+++||+++|+++++|||+|+||||+|||+|||++||+
T Consensus 438 ~~al~~l~~l~~~~-------------------~~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~ 489 (513)
T PRK07512 438 RRAIAALLPLEAGA-------------------GPAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA 489 (513)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh
Confidence 99999999997542 13579999999999999999999999999999999986
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-84 Score=760.39 Aligned_cols=541 Identities=22% Similarity=0.288 Sum_probs=430.6
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC-CcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCC
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS-HTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGD 132 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~-~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~ 132 (661)
.++.++||||||||.|||+||++|++.|++|+||||.....+ ++...+||++.... ...|+++.|+.|+++.+.+++|
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~-~~~ds~e~~~~Dt~~~g~gl~d 87 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVI-PGKAEPEDYVAEITRANDGIVN 87 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccC-CCccCHHHHHHHHHhhcCCCCC
Confidence 445679999999999999999999999999999999876433 33334456644332 1358999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC----
Q psy15089 133 QDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY---- 208 (661)
Q Consensus 133 ~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~---- 208 (661)
+++++.+++++++.++||+++|++|++..+|.+..+.+... ......+.+|..+...|.+.+.+.
T Consensus 88 ~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~-----------~~~~~~~~tG~~i~~~L~~~l~~~~~~~ 156 (897)
T PRK13800 88 QRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRS-----------GSYVLPMPEGKDVKKALYRVLRQRSMRE 156 (897)
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccC-----------CCccccCCCchhHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999888876543322110 001113557888888888777654
Q ss_pred CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc------CCC-CCCCCCCCChHHHHHHHcC
Q psy15089 209 DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA------YFS-CTSAHTCTGDGTAMISRAG 281 (661)
Q Consensus 209 gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~------~~~-~~~~~~~tGdG~~~a~~aG 281 (661)
+|.++.++.+++|+.++|+|+||++++..+|+.+.|.||+|||||||++++ |.. +++++.+||||++||+++|
T Consensus 157 ~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~~~tGDG~amA~raG 236 (897)
T PRK13800 157 RIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAG 236 (897)
T ss_pred CcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCCCcccHHHHHHHHcC
Confidence 689999999999999999999999998889999999999999999999987 322 2334589999999999999
Q ss_pred CccCCCcccccccccccCCCceecccccCCCcEEEcCCCCccccc-cccccccccchhHhhhhHHHHHHhcCCCCCCCCc
Q psy15089 282 LPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMER-YAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDH 360 (661)
Q Consensus 282 a~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~-~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~ 360 (661)
|.+.||||+||||+.....+.++++.++++|++++|.+|+|||++ |.+ + .+...+..++.+|+| .
T Consensus 237 A~l~~me~vqfhPt~~~~~g~~~~~~~~~~G~~lvN~~GeRFm~~~~~~-------~-~i~~~i~~ei~~g~g------~ 302 (897)
T PRK13800 237 AELSGIECFQINPLIKDYNGPACAYVANPFGGYQVNAQGERFVDSDYWS-------G-QMMAEVKREIESARG------P 302 (897)
T ss_pred CcccCceeEEeeccccCCCCchhheeecccCcEEECCCCCccccCcccc-------h-hHHHHHHHHHhcCCC------C
Confidence 999999999999987755555666777889999999999999974 322 2 123355667777654 4
Q ss_pred EEEeCCCCChHHHHhHhhhHHHHHH--------HHcCCCCCCCCeeee-----ccccccccCcccCCCCeEEeecCCCCc
Q psy15089 361 VYLQLHHLPPEDLHQRLPGISETAM--------IFAGVDVTREPIPVL-----PTVHYNMGGIPTNYKGQVLTHVNGQDK 427 (661)
Q Consensus 361 v~~d~~~~~~~~l~~~~~~~~~~~~--------~~~gid~~~~~i~v~-----p~~~~~~GGi~vd~~~~vl~~d~~~~T 427 (661)
||+|++|++++.++ +||.+.+.+. ...|+||.++++|+. |..||+||||.||.+++ |
T Consensus 303 vyLD~~~l~~e~~~-~l~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~---------T 372 (897)
T PRK13800 303 IYLKVSHLPEETLS-ALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR---------T 372 (897)
T ss_pred EEEECCCCCHHHHH-HHHHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCc---------c
Confidence 99999999988776 7777665431 125999999999964 45677889999999886 9
Q ss_pred cccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHH
Q psy15089 428 IIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTAD 507 (661)
Q Consensus 428 ~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (661)
+||||||||||+|++ +|++++|+|||++||++|++++..............+...+.+...+....+..+.+
T Consensus 373 ~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (897)
T PRK13800 373 TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPDGPPQPQ 444 (897)
T ss_pred cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhchhhccCCCChHH
Confidence 999999999988642 589999999999999999998643211111111111222222111111222345678
Q ss_pred HHHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCC
Q psy15089 508 LRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587 (661)
Q Consensus 508 ~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG 587 (661)
++++||++||+|+||+|++++|++|+++|++|+++++++.+.+ |++|++++|++||+++|+++++|||+||||||
T Consensus 445 ~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~-----~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESRG 519 (897)
T PRK13800 445 VEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMGART-----PHELMRCAEVSFIRDCAEMAARSSLTRTESRW 519 (897)
T ss_pred HHHHHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999999999999999998887766554 69999999999999999999999999999999
Q ss_pred c--cccccCCCCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 588 A--HAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 588 ~--H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
+ |||+|||++||+ ||+||++++.+ .+|+++++|+||....+....+..+||..|.|
T Consensus 520 ~~~H~R~DyP~~~d~-----------------~w~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 577 (897)
T PRK13800 520 GLYHDRADLPERDDA-----------------SWGYHLNLRKG-DDGEMEFLKRPVAPYFVPVPELDDLPPVDRTV 577 (897)
T ss_pred ccccccCCCCCCChH-----------------hhhhheeeeec-CCCcEEEEEecccceecchhhcCCCCCCCccc
Confidence 9 999999999999 99999998764 56889999999876666654677899999988
No 31
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=100.00 E-value=1.4e-83 Score=711.01 Aligned_cols=484 Identities=36% Similarity=0.573 Sum_probs=419.6
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
+++||||||+|+|||+||+.|++.|. |+||||....++++.+++||+++... ..|+++.|+.|+++.+.+++|++++
T Consensus 1 ~~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~--~~ds~e~~~~d~~~~~~~~~d~~~v 77 (488)
T TIGR00551 1 HSCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLA--ETDSIDSHVEDTLAAGAGICDREAV 77 (488)
T ss_pred CCccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeec--CCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 36899999999999999999999997 99999998888999999999988765 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHh-CCcEEEEe
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLR-YDCNYFVE 215 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~-~gv~i~~~ 215 (661)
+.+++++++.++||+++|++|.+..+|.+....++||+. +|.++..+.+|..++..|.+.+++ .||+++.+
T Consensus 78 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~ 149 (488)
T TIGR00551 78 EFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSY--------RRILHAADATGREVITTLVKKALNHPNIRIIEG 149 (488)
T ss_pred HHHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCC--------CeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC
Confidence 999999999999999999999988888766666677654 577777788899999999999987 69999999
Q ss_pred EEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccc
Q psy15089 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295 (661)
Q Consensus 216 ~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~ 295 (661)
+.+++|+.++++|+|+.+.+. ++...|.||.||+||||++.+|..+++++.++|||+.||+++|+.+.||||+||||+
T Consensus 150 ~~v~~l~~~~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~pt 227 (488)
T TIGR00551 150 ENALDLLIETGRVVGVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPT 227 (488)
T ss_pred eEeeeeeccCCEEEEEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEee
Confidence 999999998899999988752 555679999999999999999999999999999999999999999999999999998
Q ss_pred cccCC---CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHH
Q psy15089 296 GIYGA---GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPED 372 (661)
Q Consensus 296 ~~~~~---g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~ 372 (661)
.+..+ .+++++.++++|++++|.+|+||+++|+|. .++.+||++++++..++.++.+ +.+|+|.++++ .
T Consensus 228 ~~~~~~~~~~l~~~~~~g~g~~lvn~~G~RF~~~~~~~-~el~~rd~v~~ai~~~~~~~~~-----~~v~ld~~~~~--~ 299 (488)
T TIGR00551 228 ALYKPRARYFLITEAVRGEGAYLVDRDGTRFMADFHPR-GELAPRDIVARAIDHEMKRGGA-----DCVFLDASGIE--A 299 (488)
T ss_pred EecCCCCcceeeehhhcCCceEEECCCCCChhhccCcc-cccCchHHHHHHHHHHHHhcCC-----CeEEecCcchH--H
Confidence 76554 357888899999999999999999999987 4899999999999999887532 25999999875 3
Q ss_pred HHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchh
Q psy15089 373 LHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGAN 452 (661)
Q Consensus 373 l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~ 452 (661)
+.+++|.+.+.+.. .|+|+.++|+||.|++||+||||+||.+++ |+||||||||||+|+|+||+|||+||
T Consensus 300 ~~~~~~~~~~~~~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~I~GLyAaGE~a~~g~hGanrl~g~ 369 (488)
T TIGR00551 300 FRQRFPTIYAKCLG-AGIDPTREPIPVVPAAHYTCGGISVDDHGR---------TTVPGLYAIGEVACTGLHGANRLASN 369 (488)
T ss_pred HHHHcchHHHHHHH-hCCCCCCCceecccccEEecCCEEECCCCc---------ccCCCEEECccccccccCcccccchh
Confidence 78889999888775 799999999999999999999999999887 89999999999998899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHH
Q psy15089 453 SLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEG 532 (661)
Q Consensus 453 ~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~a 532 (661)
||++|+|||++||++|+++.... +. .... ...... ..........+.+++.+||++||+++||+|++++|+++
T Consensus 370 sl~~~~v~G~~Ag~~aa~~~~~~---~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~~~m~~~~gi~r~~~~l~~a 442 (488)
T TIGR00551 370 SLLECLVFGWSAAEDISRRPPYA---SD-ISTS--PPWDEP-RSENPDDRVVLQHNMSELRSFMWDYAGIVRLTKSLERA 442 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc---Cc-cchh--hhhhhh-hhcccccccchHHHHHHHHHHHhheeeEEEcHHHHHHH
Confidence 99999999999999998864321 00 0000 000000 01111122346788899999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCC
Q psy15089 533 CNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFK 595 (661)
Q Consensus 533 l~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P 595 (661)
+++|++|++++. .++++||+++|+++++|||+|+||||+|||+|||
T Consensus 443 l~~~~~l~~~~~-----------------~~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 443 LRRLVMLQQEID-----------------EYELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 999999987653 1256999999999999999999999999999998
No 32
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=100.00 E-value=1.4e-83 Score=716.73 Aligned_cols=522 Identities=25% Similarity=0.336 Sum_probs=407.3
Q ss_pred cEEEECCcHHHHHHHHHhH----HCCCcEEEEEecCCCCCCcccccC--ceEEccCCC-CCCCHHHHHHHHHhccCCCCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLV----AEGFKTAVITKLFPTRSHTVAAQG--GINAALGNM-EEDDWHWHMYDTVKGSDWLGD 132 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa----~~G~~V~liek~~~~~~~s~~a~G--g~~~~~~~~-~~d~~~~~~~d~~~~g~~l~~ 132 (661)
||||||||+|||+||++|+ ++|++|+||||....++++ .++| |+++.+... ..|+++.|+.+++..+.+++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 7899999999988776666 5777 455444321 247889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCcccCC-CCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcE
Q psy15089 133 QDAIHYMTREAPKAVIELENYGMPFSRTT-DGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCN 211 (661)
Q Consensus 133 ~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~-~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~ 211 (661)
+++++.+++++++.++||+++|++|++.+ +|.+.. .+... ....|+.+...+...+.+.+++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~--~g~~~---------------~~~gG~~~~r~l~~~l~~~~~~ 142 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVR--EGRWQ---------------IMIHGESYKPIVAEAAKNALGD 142 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCcccc--CCCcc---------------cCcCchhHHHHHHHHHHhCCCe
Confidence 99999999999999999999999998764 553211 11000 0012456666666666667789
Q ss_pred EEEeEEEEEEEEeC---CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCC---------CCCCCCChHHHHHHH
Q psy15089 212 YFVEYFALDLIIEN---GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCT---------SAHTCTGDGTAMISR 279 (661)
Q Consensus 212 i~~~~~v~~l~~~~---g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~---------~~~~~tGdG~~~a~~ 279 (661)
++.++.+++|++++ |+|+||++++..+|+.+.|.||+|||||||++.+|.+++ +++.+||||+.||++
T Consensus 143 i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~ 222 (614)
T TIGR02061 143 IFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQ 222 (614)
T ss_pred EEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHH
Confidence 99999999999965 799999998878898888999999999999999987643 367899999999999
Q ss_pred cCCccCCCcccccccccccC----CC--ceecccccCCCcEEEcCCCCcccccccccccccc----------chhHhhhh
Q psy15089 280 AGLPNEDLEFVQFHPTGIYG----AG--CLITEGCRGEGGYLINSEGERFMERYAPVAKDLA----------SRDVVSRS 343 (661)
Q Consensus 280 aGa~l~~~ef~q~~p~~~~~----~g--~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~----------~rd~~~~~ 343 (661)
+||.+.+||| ||||+.+.. .+ ++++| ++++|.+|+|||++|+|...++. +||+++++
T Consensus 223 aGA~l~dme~-qf~pt~~~~~~~~~~~~~l~~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~vara 295 (614)
T TIGR02061 223 AGAEMTQMEN-RFVPARFKDGYGPVGAWFLLFK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRNHM 295 (614)
T ss_pred cCCCccCCcc-ceecceeccccCCCCceEEEee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHHHH
Confidence 9999999999 999987742 12 56665 78999999999998887654443 46899999
Q ss_pred HHHHHHhcCCCCCCCCcEEEeCCCC---------------ChHHHHhHhhhHHHHHHHH--cCCCCCCCCeeeecccccc
Q psy15089 344 MTIEIREGRGVGPDKDHVYLQLHHL---------------PPEDLHQRLPGISETAMIF--AGVDVTREPIPVLPTVHYN 406 (661)
Q Consensus 344 i~~e~~~g~g~~~~~~~v~~d~~~~---------------~~~~l~~~~~~~~~~~~~~--~gid~~~~~i~v~p~~~~~ 406 (661)
|..|+.+|+| .||+|++++ +.+.+...++.....+..+ .|+||.++||||.|++||+
T Consensus 296 i~~e~~~g~g------~vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy~ 369 (614)
T TIGR02061 296 MLREMREGRG------PIYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYL 369 (614)
T ss_pred HHHHHHcCCC------CEEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCee
Confidence 9999998876 299998854 4455555555444444333 4999999999999999999
Q ss_pred cc------CcccC---------CCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHh
Q psy15089 407 MG------GIPTN---------YKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE 471 (661)
Q Consensus 407 ~G------Gi~vd---------~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~ 471 (661)
|| ||.|| .+|+. ..|.+++|+||||||||||+|+++| |++||||+++.++|..|++.+...
T Consensus 370 mGg~~~~~Gi~vd~~~~~~~~~~~~~~-~~~~~~~T~i~gLyA~Ge~~~~~~h---~l~~nsl~eg~~ag~~a~~~~~~~ 445 (614)
T TIGR02061 370 MGSHSGCCGIWVSGPEDWVPEEYKVRA-AKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWILDH 445 (614)
T ss_pred cCCcccccceeeccccccccccccccc-ccccCCccccCCEEeceecccCcch---hhHHhHHHHHHHHHHHHHHHHHhC
Confidence 99 89887 22221 0113456999999999999988899 488999987655555555544321
Q ss_pred cCCCCCCCcccccchhhhHhhh----hHhh---h---c----CCCCCHHHHHHHHHHHhcccceee-----eCHHHHHHH
Q psy15089 472 NKPGAPIKPFAANAGESSVANL----DWVR---H---A----KGDITTADLRLTMQKTMQTYAAVF-----RTQETLQEG 532 (661)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~----~~~~---~---~----~~~~~~~~~~~~l~~~m~~~~g~~-----R~~~~L~~a 532 (661)
. ..+.......+....++ ..+. . . ...+++.+++++||++||+|+|++ |++++|++|
T Consensus 446 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~~a 521 (614)
T TIGR02061 446 K----DFKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTG 521 (614)
T ss_pred C----CCCCCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHHHH
Confidence 1 01111111111111111 1111 1 0 011357788999999999999999 999999999
Q ss_pred HHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCC--CccccccCCCCccccccCCCCCCC
Q psy15089 533 CNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESR--GAHAREDFKVRVDELDYAKPLEGQ 610 (661)
Q Consensus 533 l~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESR--G~H~R~D~P~~dd~~~~~~~~~~~ 610 (661)
|++|++|+++++++.+.+ +++|++++|++|||++|+++++|||+|+||| |+|||+|||++||+
T Consensus 522 l~~l~~l~~~~~~~~~~~-----~~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~---------- 586 (614)
T TIGR02061 522 LKLMAMLEEDLEKLAARD-----LHELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDE---------- 586 (614)
T ss_pred HHHHHHHHHHHhcccCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCch----------
Confidence 999999998887766555 3899999999999999999999999999999 99999999999998
Q ss_pred CCCCccccccceEEEEeeCCCCceEEEeeccc
Q psy15089 611 VPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVI 642 (661)
Q Consensus 611 ~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~ 642 (661)
+|+||++++++.++|+++++|+|+.
T Consensus 587 -------~w~~~~~~~~~~~~g~~~~~~~~~~ 611 (614)
T TIGR02061 587 -------NWKCFVNSKYDPATGETTIEKKPYY 611 (614)
T ss_pred -------hhhceEEEEEcCCCCceEEEeeccc
Confidence 9999999887666799999999985
No 33
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=1e-81 Score=705.30 Aligned_cols=523 Identities=24% Similarity=0.309 Sum_probs=417.8
Q ss_pred CcccccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcc-cccCceEEccCCCCCCCHHHHHHHHHhccCC
Q psy15089 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTV-AAQGGINAALGNMEEDDWHWHMYDTVKGSDW 129 (661)
Q Consensus 53 ~~~~~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~-~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~ 129 (661)
+....++||||||||+|||+||++|+++ |++|+||||....++++. .++||++..... ..|+++.|+.|+++.+.+
T Consensus 4 ~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~-~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 4 NTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIP-GHATPEQYTKEITIANDG 82 (554)
T ss_pred CceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhcc-CCCCHHHHHHHHHHhcCC
Confidence 3345679999999999999999999987 789999999877555443 455666654431 258899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCC
Q psy15089 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD 209 (661)
Q Consensus 130 l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~g 209 (661)
++++++++.+++++++.++||+++|++|.+..+|.+..... +.. ......+.+|..+.+.|.+++++.|
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~--~~~---------~~~~~~~~~G~~i~~~L~~~~~~~g 151 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKV--HHM---------GSYVLPMPEGHDIKKVLYRQLKRAR 151 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecc--ccc---------CcccccCCChHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999998876665432110 100 0001123468899999999999999
Q ss_pred cEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc------CCC-CCCCCCCCChHHHHHHHcC
Q psy15089 210 CNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA------YFS-CTSAHTCTGDGTAMISRAG 281 (661)
Q Consensus 210 v~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~------~~~-~~~~~~~tGdG~~~a~~aG 281 (661)
++++.++.+++|+.+ +++|+||++.+..+|+...+.||.|||||||++++ |.. +++++.+||||++||+++|
T Consensus 152 v~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aG 231 (554)
T PRK08275 152 VLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAG 231 (554)
T ss_pred CEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcC
Confidence 999999999999997 78999999887678888889999999999999987 322 2345689999999999999
Q ss_pred CccCCCcccccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcE
Q psy15089 282 LPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHV 361 (661)
Q Consensus 282 a~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v 361 (661)
|.+.+|||+||||+.....+........+.|++++|.+|+|||++|+|. ..++++|..|+.+|+| .|
T Consensus 232 A~l~~me~~q~~p~~~~~~~~~~~~~~~~~g~~lvn~~G~RF~~~~~~~-------~~~~~ai~~e~~~g~g------~v 298 (554)
T PRK08275 232 AELANLECFQINPLIKDYNGPACAYVTGPLGGYTANAKGERFIECDYWS-------GQMMWEFYQELQSGNG------PV 298 (554)
T ss_pred CcccCceEEEEeceeecCCCCccceeccccCcEEeCCCCCccccccCCc-------hHHHHHHHHHHHcCCC------cE
Confidence 9999999999999765332221111111468899999999999988764 3578999999988765 39
Q ss_pred EEeCCCCChHHHHhHhhhHHHH--------HHHHcCCCCCCCCeeeecccc-----ccccCcccCCCCeEEeecCCCCcc
Q psy15089 362 YLQLHHLPPEDLHQRLPGISET--------AMIFAGVDVTREPIPVLPTVH-----YNMGGIPTNYKGQVLTHVNGQDKI 428 (661)
Q Consensus 362 ~~d~~~~~~~~l~~~~~~~~~~--------~~~~~gid~~~~~i~v~p~~~-----~~~GGi~vd~~~~vl~~d~~~~T~ 428 (661)
|+|+++++++.+.. ++.+... +....|+|+.++|+||.|++| |+||||.||.+++ |+
T Consensus 299 ~ld~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~---------t~ 368 (554)
T PRK08275 299 FLKLDHLAEETIQT-IETILHTNERPSRGRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAE---------TT 368 (554)
T ss_pred EEECCCCCHHHHHH-HHhhhhhcccchHHHHHHHcCCCcccCcccccCCCceeecccccCcEEECCCCc---------cC
Confidence 99999999876643 4444322 223469999999999999887 4567999998876 99
Q ss_pred ccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHH
Q psy15089 429 IHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADL 508 (661)
Q Consensus 429 ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (661)
||||||||||++.+ +|++++|++||++||++|+++++... .+.......+...+++..++...++.+|.++
T Consensus 369 i~gl~a~Ge~~~~~--------~~~~~~~~~~G~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (554)
T PRK08275 369 VPGLYAAGDMASVP--------HNYMLGAFTYGWFAGENAAEYVAGRD-LPEVDAAQVEAERARVLAPLHREDGLPPAQV 439 (554)
T ss_pred CCCEEECcccCCch--------hHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHhccccccCCCCHHHH
Confidence 99999999986432 58999999999999999999875322 1211111122222333333334456789999
Q ss_pred HHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCc
Q psy15089 509 RLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGA 588 (661)
Q Consensus 509 ~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 588 (661)
+++||++||+|+|++|++++|++||++|++|++++.++.+.| +++|++++|++|||++|+++++|||+||||||+
T Consensus 440 ~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~-----~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~ 514 (554)
T PRK08275 440 EYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLERIKARD-----PHELMRALEVSSIRDCAEMAARASLFRTESRWG 514 (554)
T ss_pred HHHHHHHHHhhcCccccHHHHHHHHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999998887776655 389999999999999999999999999999998
Q ss_pred --cccccCCCCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeeccc
Q psy15089 589 --HAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVI 642 (661)
Q Consensus 589 --H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~ 642 (661)
|||.|||++||+ +|+||++++++ ++|+++++++|+.
T Consensus 515 ~~H~R~DyP~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~ 552 (554)
T PRK08275 515 LYHYRVDFPERNDA-----------------EWFCHTHLRKD-EDGRMVSFKRPVE 552 (554)
T ss_pred cccccCCCCCCChh-----------------hhceeeEEEEc-CCCceEEEeeccC
Confidence 999999999998 99999998864 5789999999985
No 34
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=100.00 E-value=1.9e-81 Score=706.65 Aligned_cols=528 Identities=23% Similarity=0.264 Sum_probs=415.0
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcccccC--ceEEccCCCCCCCHHHHHHHHHhccCC
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTVAAQG--GINAALGNMEEDDWHWHMYDTVKGSDW 129 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~~a~G--g~~~~~~~~~~d~~~~~~~d~~~~g~~ 129 (661)
....++||||||||+|||+||+.|+++ |++|+||||....++++ .++| +++...+ ..|+++.|+.++++.+.+
T Consensus 7 ~~~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~--~~ds~e~~~~d~~~~~~~ 83 (608)
T PRK06854 7 VVEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIG--EGETPEDYVRYVRKDLMG 83 (608)
T ss_pred cceeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccc--cCCCHHHHHHHHHHhccC
Confidence 334579999999999999999999998 99999999987765554 3444 3443333 356889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCC
Q psy15089 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD 209 (661)
Q Consensus 130 l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~g 209 (661)
++++++++.+++++++.++||+++|++|.+..+|.+.. .++ .+. ...|..+...|.+.+++.+
T Consensus 84 ~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~---~g~----------~~~----~~~G~~~~~~L~~~a~~~g 146 (608)
T PRK06854 84 IVREDLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVR---RGR----------WQI----MINGESYKPIVAEAAKKAL 146 (608)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccc---cCC----------ccC----CCChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998776665432 111 010 1256788888988888875
Q ss_pred -cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCC---------CCCCCCChHHHHHHH
Q psy15089 210 -CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCT---------SAHTCTGDGTAMISR 279 (661)
Q Consensus 210 -v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~---------~~~~~tGdG~~~a~~ 279 (661)
|+++.++.|++|+.++++|+||.+++..+|+...|.||+|||||||++.+|.+++ +++.+||||+.||++
T Consensus 147 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~ 226 (608)
T PRK06854 147 GDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIR 226 (608)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHH
Confidence 9999999999999988999999887767788778999999999999999887643 266899999999999
Q ss_pred cCCccCCCcccccccccccC---C-CceecccccCCCcEEEcCCCCccccccccccc--------cccchhHhhhhHHHH
Q psy15089 280 AGLPNEDLEFVQFHPTGIYG---A-GCLITEGCRGEGGYLINSEGERFMERYAPVAK--------DLASRDVVSRSMTIE 347 (661)
Q Consensus 280 aGa~l~~~ef~q~~p~~~~~---~-g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~--------~l~~rd~~~~~i~~e 347 (661)
+||.+.|||| ||||+.+.. + +.+ .+++|++++|.+|+|||++|+|... +++|||+++++|..|
T Consensus 227 aGA~l~~me~-qf~p~~~~~~~~~~~~~----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e 301 (608)
T PRK06854 227 AGAEMTTFEN-RFIPLRFKDGYGPVGAW----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEE 301 (608)
T ss_pred hCCcccCCcc-eEeccccCCCCCCcccc----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHH
Confidence 9999999999 999987532 1 222 2578999999999999999988543 467899999999999
Q ss_pred HHhcCCCCCCCCcEEEeCCCCC------hHHHHhHhh---hHHHHHHHHcCCCCCCCCeeeeccccccccC------ccc
Q psy15089 348 IREGRGVGPDKDHVYLQLHHLP------PEDLHQRLP---GISETAMIFAGVDVTREPIPVLPTVHYNMGG------IPT 412 (661)
Q Consensus 348 ~~~g~g~~~~~~~v~~d~~~~~------~~~l~~~~~---~~~~~~~~~~gid~~~~~i~v~p~~~~~~GG------i~v 412 (661)
+.+|+| .||+|+++++ .+.+++.++ .....+. ..|+||.++||||.|++||+||| |.|
T Consensus 302 ~~~g~g------~v~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi~v 374 (608)
T PRK06854 302 NKAGRG------PIYMDTEEALQDKHLESELWEDFLDMTPGQALLWA-AQNIEPEEENSEIMGTEPYIVGSHSGASGYWV 374 (608)
T ss_pred HhcCCC------CeEEEcccccccchhHHHHHHHHhccCHHHHHHHH-HcCCCcccCceeeeccCCeeecCCCCceEEEe
Confidence 998865 2999998875 233444443 3333232 25999999999999999999998 788
Q ss_pred CCCCeEEeec----CCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCC-CCCCcccccchh
Q psy15089 413 NYKGQVLTHV----NGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPG-APIKPFAANAGE 487 (661)
Q Consensus 413 d~~~~vl~~d----~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~-~~~~~~~~~~~~ 487 (661)
|....+...+ .+++|+||||||||||++++.| +++++++ ++|++||.+++++++.. ...+.+.....+
T Consensus 375 d~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~---~l~~~s~----~~g~~ag~~~~~~~~~~~~~~~~~~~~~~~ 447 (608)
T PRK06854 375 SGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSF----AEGRIAAKAAVRYILDNKDEKPEIDDDQIE 447 (608)
T ss_pred cCcccccccccccccccccCCCCEEEeeecCCCCcc---hhHHHHH----HHHHHHHHHHHHHHHhCCcCCCCCCHHHHH
Confidence 8222111111 2346999999999999865544 5666655 47888888888876432 111222222222
Q ss_pred hhHhhhh----Hhhh----------cCCCCCHHHHHHHHHHHhcccceee-----eCHHHHHHHHHHHHHHHHHHhcccc
Q psy15089 488 SSVANLD----WVRH----------AKGDITTADLRLTMQKTMQTYAAVF-----RTQETLQEGCNKMAALYKDLAHLKV 548 (661)
Q Consensus 488 ~~~~~~~----~~~~----------~~~~~~~~~~~~~l~~~m~~~~g~~-----R~~~~L~~al~~l~~l~~~~~~~~~ 548 (661)
...+++. .+.. ..+..++.+++.+||++||+|+|++ |++++|++||++|++|+++++++.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~~~ 527 (608)
T PRK06854 448 ELKKEIYAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKLAA 527 (608)
T ss_pred HHHHHHHhHHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhccC
Confidence 2222221 1110 1234568899999999999999998 9999999999999999988877766
Q ss_pred ccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCC--CccccccCCCCccccccCCCCCCCCCCCccccccceEEEE
Q psy15089 549 FDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESR--GAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTD 626 (661)
Q Consensus 549 ~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESR--G~H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~ 626 (661)
.| .++|++++|++||+++|+++++|||+||||| |+|||+|||++||+ +|+||++++
T Consensus 528 ~~-----~~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~-----------------~~~~~~~~~ 585 (608)
T PRK06854 528 RD-----LHELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDE-----------------NWKCFVNSR 585 (608)
T ss_pred CC-----HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChh-----------------hhcEEEEEE
Confidence 55 3899999999999999999999999999999 99999999999998 899999988
Q ss_pred eeCCCCceEEEeeccc
Q psy15089 627 VDVNTGKVKIYYRPVI 642 (661)
Q Consensus 627 ~~~~~g~~~~~~~~v~ 642 (661)
++.++|+++++++|+.
T Consensus 586 ~~~~~~~~~~~~~~~~ 601 (608)
T PRK06854 586 YDPGTGEWTIRKLPYY 601 (608)
T ss_pred EcCCCCcEEEEEeccc
Confidence 8777899999988885
No 35
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.7e-78 Score=663.44 Aligned_cols=450 Identities=34% Similarity=0.550 Sum_probs=383.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHH
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHY 138 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~ 138 (661)
.||||||+|+|||+||+.|++.|++|+||||.. ..+++..++||++.... ..|+++.|+.|+++.+.+++|+++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~--~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPIL--EGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccC--CCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 699999999999999999999999999999984 56677788999977654 468899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEE
Q psy15089 139 MTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFA 218 (661)
Q Consensus 139 ~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v 218 (661)
+++++++.++||+++|++|.+.. .++++++ +|.++..+.+|..+++.|.+.+++.|++++.. .+
T Consensus 79 ~~~~~~~~i~~L~~~Gv~f~~~~-------~~~g~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v 142 (466)
T PRK08401 79 VISKSSEAYDFLTSLGLEFEGNE-------LEGGHSF--------PRVFTIKNETGKHIIKILYKHARELGVNFIRG-FA 142 (466)
T ss_pred HHHHHHHHHHHHHHcCCCcccCC-------CcCCccC--------CeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-Ee
Confidence 99999999999999999997531 1244433 56666677789999999999999999999875 79
Q ss_pred EEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccccccccc
Q psy15089 219 LDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIY 298 (661)
Q Consensus 219 ~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~ 298 (661)
++|+.++++|+|+.+ +|+ .+.||.|||||||++++|..+++++.++|||+.+|+++||.+.+|||+||||+.++
T Consensus 143 ~~l~~~~g~v~Gv~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~~ 216 (466)
T PRK08401 143 EELAIKNGKAYGVFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFI 216 (466)
T ss_pred EEEEeeCCEEEEEEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEeccccc
Confidence 999888899999875 343 48999999999999999988889999999999999999999999999999998776
Q ss_pred CC--CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHHHHhH
Q psy15089 299 GA--GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQR 376 (661)
Q Consensus 299 ~~--g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~ 376 (661)
.+ ++++++.++++|++++|.+|+||++ |+.+|+++++++..++..++ .+|+|.++++ .+.++
T Consensus 217 ~~~~~~l~~e~~r~~g~ilvN~~G~RF~~-------E~~~rd~v~~ai~~~~~~~~-------~v~ld~~~~~--~~~~~ 280 (466)
T PRK08401 217 GKRGTYLISEAVRGAGAKLVTGDGERFVN-------ELETRDIVARAIYRKMQEGK-------GVFLDATGIE--DFKRR 280 (466)
T ss_pred CCCCCeEEeeecccCceEEECCCCCChhc-------ccccHHHHHHHHHHHHhcCC-------EEEEeCcCHH--HHHHH
Confidence 43 4788899999999999999999997 46678999999998887654 3999998863 46778
Q ss_pred hhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhh
Q psy15089 377 LPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLD 456 (661)
Q Consensus 377 ~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~ 456 (661)
+|.+.+.+.. .|+|+.++++|+.|..||+||||.||.+++ |+||||||||||+|+|+||+|||+||||++
T Consensus 281 ~~~~~~~~~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~ 350 (466)
T PRK08401 281 FPQIYAFLRK-EGIDPSRDLIPVTPIAHYTIGGISVDTFYR---------TGIKNLYAIGEAASNGFHGANRLASNSLLE 350 (466)
T ss_pred hHHHHHHHHH-cCCCcCCcccccccceeecCCCEEECCCCc---------ccCCCEEECccccccCCCCCCcchhHHHHH
Confidence 8887777665 799999999999999999999999999886 999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHHHHHHHH
Q psy15089 457 LVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKM 536 (661)
Q Consensus 457 a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 536 (661)
|+|||++||++|++.... .... .. .... ...+.++ ++||++||+++||+|++++|++++.+|
T Consensus 351 ~~v~G~~ag~~aa~~~~~------~~~~-~~---~~~~-------~~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~~~~ 412 (466)
T PRK08401 351 CIVSGLEVARTISRERPK------LREV-KE---PPYH-------GYELGDV-DSIREILWNHAGIVRSEESLREGLKKL 412 (466)
T ss_pred HHHHHHHHHHHHhhhCcC------cccc-ch---hhhh-------ccccccH-HHHHHHHhccceEEECHHHHHHHHHHH
Confidence 999999999999864211 0000 00 0000 0012233 569999999999999999999999999
Q ss_pred HHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCccccccCCCCccc
Q psy15089 537 AALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDE 600 (661)
Q Consensus 537 ~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~dd~ 600 (661)
++|+++ .+|+++|+++++|||+|+||||+|||+|||++|++
T Consensus 413 ~~l~~~-----------------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~~ 453 (466)
T PRK08401 413 EGIEAD-----------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKE 453 (466)
T ss_pred HHHHhc-----------------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccChh
Confidence 988631 25688999999999999999999999999998774
No 36
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.3e-63 Score=542.20 Aligned_cols=423 Identities=31% Similarity=0.498 Sum_probs=352.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.++||||||+|.|||+||+.|+ .|++|+||||....++++..++||++... ..++++.++.|+++.+.+.+|++++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~---~~d~~~~~~~d~~~~g~~~~d~~lv 78 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR---NKDDITSFVEDTLKAGQYENNLEAV 78 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC---CCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4699999999999999999985 69999999999888888998999998654 3578899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHh-CCcEEEEe
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLR-YDCNYFVE 215 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~-~gv~i~~~ 215 (661)
+.+++++++.++||+++|++|.+..+. .....+++|+ ..|.++..+.+|..++..|.+.+++ .||+++++
T Consensus 79 ~~~~~~s~e~i~wL~~~Gv~f~~~~~~-~~~~~~g~~~--------~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~ 149 (433)
T PRK06175 79 KILANESIENINKLIDMGLNFDKDEKE-LSYTKEGAHS--------VNRIVHFKDNTGKKVEKILLKKVKKRKNITIIEN 149 (433)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCc-eeeeccCccc--------cCeEEecCCCChHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999999999999999999876432 2223344544 3577777788899999999988875 49999999
Q ss_pred EEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccc
Q psy15089 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295 (661)
Q Consensus 216 ~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~ 295 (661)
+.+++|+.++++|+|+++.+ +++.+.|.||.|||||||++++|..+++++.++|||+.||+++|+.+.+|+|+|+||+
T Consensus 150 t~v~~Li~~~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~ 227 (433)
T PRK06175 150 CYLVDIIENDNTCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPT 227 (433)
T ss_pred cEeeeeEecCCEEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEece
Confidence 99999999889999988753 5555679999999999999999988888899999999999999999999999999998
Q ss_pred cccCC-----CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCCh
Q psy15089 296 GIYGA-----GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPP 370 (661)
Q Consensus 296 ~~~~~-----g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~ 370 (661)
.+++. .+++++.++++|+++||.+|+||++| +.+|+++++++..++..+. ...+|+|.++++.
T Consensus 228 ~~~~~~~~~~~~l~~~~~~~~g~ilVN~~G~RF~~E-------~~~~~~~~~ai~~~~~~~~-----~~~v~~D~~~~~~ 295 (433)
T PRK06175 228 AFYEETIEGKKFLISESVRGEGGKLLNSKGERFVDE-------LLPRDVVTKAILEEMKKTG-----SNYVYLDITFLDK 295 (433)
T ss_pred EeccCCCCCcceEeehhhcCCceEEECCCCCChhhc-------cccHHHHHHHHHHHHHhcC-----CCeEEEecccCcH
Confidence 76532 36778888899999999999999984 5678999999988876542 1358999999999
Q ss_pred HHHHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc
Q psy15089 371 EDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG 450 (661)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg 450 (661)
+.+.+++|..+..+.. .|+|+.++++|+.|+.||+||||+||.++| |+|||||||||++|+|+||+||++
T Consensus 296 ~~~~~~~~~~yn~~~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~i~gLYAaGE~a~~g~hG~nrl~ 365 (433)
T PRK06175 296 DFLKNRFPTIYEECLK-RGIDITKDAIPVSPAQHYFMGGIKVDLNSK---------TSMKNLYAFGEVSCTGVHGANRLA 365 (433)
T ss_pred HHHHHHHHHHHHHHHH-hCcCCCCCcEEEEcceeeecCCEEECCCcc---------ccCCCeEecccccccCCCccccch
Confidence 9999999887666654 699999999999999999999999999886 999999999999888999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCCCCcccccchhhhHhhhhHhhhcCCCCCHHHHHHHHHHHhcccceeeeCHHHHH
Q psy15089 451 ANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQ 530 (661)
Q Consensus 451 g~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~ 530 (661)
||||++|+|||++||++|+..+..... ...+ ... .......+.+.+++++++. +.|..+.|+
T Consensus 366 gnsl~~~lvfGr~Ag~~a~~~~~~~~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 427 (433)
T PRK06175 366 SNSLLEGLVFSKRGAEKINSEIDNIKL--NITK--VYT------------LKHDVEYYSLLNKKIIIKE--IEKLRGDLK 427 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc--cccc--ccc------------cccchhHHHHHHHHHHHHH--HHhhHHHHH
Confidence 999999999999999999876532110 0000 000 0112334556677777766 888888887
Q ss_pred HHHH
Q psy15089 531 EGCN 534 (661)
Q Consensus 531 ~al~ 534 (661)
+++.
T Consensus 428 ~~~~ 431 (433)
T PRK06175 428 DELV 431 (433)
T ss_pred HHhh
Confidence 7653
No 37
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=1.5e-51 Score=456.88 Aligned_cols=394 Identities=29% Similarity=0.478 Sum_probs=306.8
Q ss_pred CCCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHh
Q psy15089 51 EYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVK 125 (661)
Q Consensus 51 ~~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~ 125 (661)
.+..++.++||||||+|+||++||++|+++|++|+||||....++++..+.|++++..... ..++.+.++.++++
T Consensus 54 ~~~~~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~ 133 (506)
T PRK06481 54 DPSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLK 133 (506)
T ss_pred CCccccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHH
Confidence 3444667899999999999999999999999999999999888888887888876543211 24667788899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeecc--CCcHHHHHHHHHH
Q psy15089 126 GSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVA--DRTGHSLLHTLYG 203 (661)
Q Consensus 126 ~g~~l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~--~~~g~~l~~~L~~ 203 (661)
.+.+..|+++++.+++++.+.++||+++|++|.... ..++++. .|.+... ...|..++..|.+
T Consensus 134 ~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~-------~~~g~~~--------~r~~~p~~g~~~g~~l~~~L~~ 198 (506)
T PRK06481 134 GGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-------ITGGMSE--------KRTHRPHDGSAVGGYLVDGLLK 198 (506)
T ss_pred hcCCCCCHHHHHHHHhccHHHHHHHHHcCceEeecc-------cCCCCCC--------CceeccCCCCCChHHHHHHHHH
Confidence 899999999999999999999999999999986421 1122221 2332222 2346788999999
Q ss_pred HHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc------C------CCCCCCCCCCC
Q psy15089 204 QSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA------Y------FSCTSAHTCTG 271 (661)
Q Consensus 204 ~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~------~------~~~~~~~~~tG 271 (661)
.+++.|+++++++.+++|+.++++|+|+.+.. .+++...|.||.||+||||++.+ | ..+++++.++|
T Consensus 199 ~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tG 277 (506)
T PRK06481 199 NVQERKIPLFVNADVTKITEKDGKVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTG 277 (506)
T ss_pred HHHHcCCeEEeCCeeEEEEecCCEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCCh
Confidence 99999999999999999998889999998764 45566779999999999999875 2 22446778999
Q ss_pred hHHHHHHHcCCccCCCcccccccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHH----
Q psy15089 272 DGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIE---- 347 (661)
Q Consensus 272 dG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e---- 347 (661)
||+.||+++||.+.+|+++|+||+.....+.++.+.+++.++++||.+|+||++|..+ ++.+.+++..+
T Consensus 278 dGi~ma~~aGA~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~Vn~~G~RF~nE~~~-------~~~~~~~~~~~~~~~ 350 (506)
T PRK06481 278 DGIKMIEKLGGTTVDMDQIQIHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFGNELDT-------RDKVSAAINKLPEKY 350 (506)
T ss_pred HHHHHHHHcCCCccCchhhhhCCCccCCCcceehhhccCCceEEECCCCCCCCCCCcc-------HHHHHHHHHhCcCCc
Confidence 9999999999999999999999987665566666777778899999999999997543 23332222211
Q ss_pred ---------------HH--hcCCCCCCCCcE--EEeCCCCChHHHHhHhhhHHHHHHHHcCCC------------CCCCC
Q psy15089 348 ---------------IR--EGRGVGPDKDHV--YLQLHHLPPEDLHQRLPGISETAMIFAGVD------------VTREP 396 (661)
Q Consensus 348 ---------------~~--~g~g~~~~~~~v--~~d~~~~~~~~l~~~~~~~~~~~~~~~gid------------~~~~~ 396 (661)
+. ...|+-...+.+ ..+.-+++++.|++++..|++.|. .|.| +.+.|
T Consensus 351 ~~~i~D~~~~~~~~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~--~g~D~~fgr~~~~~~~i~~~P 428 (506)
T PRK06481 351 AYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVK--NKKDEAFGRTTGMDNDLSTGP 428 (506)
T ss_pred EEEEECHHHHhhhhhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh--cCCCcccCCCCCCCCCCcCCC
Confidence 00 001100000000 001125788999999999998876 3443 23455
Q ss_pred ---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 397 ---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 397 ---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
+++.|..|+++||++||.++||++.| .++|||||||||++ +|+||.||++|+++++|++||++||++|+++++
T Consensus 429 fYai~~~p~~~~T~GGl~in~~~qVld~~---g~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 429 YYAIKIAPGIHYTMGGVKINTNTEVLKKD---GSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred EEEEEEecceeecccCeEECCCceEEcCC---CCEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999999999988 68999999999986 699999999999999999999999999998864
No 38
>KOG2404|consensus
Probab=100.00 E-value=2.6e-50 Score=390.91 Aligned_cols=373 Identities=31% Similarity=0.476 Sum_probs=297.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccCCCCCHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
-|||||+|.|||+|+..+-..|-.|+++||....+++|..+..||+.+.... -.|+++.+..|++..+.....|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 6999999999999999999998889999999999999999999998775432 36888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCcccCCCCcccccccCCcccccCCCCccceeeec--cCCcHHHHHHHHHHHHHhC---
Q psy15089 135 AIHYMTREAPKAVIELEN-YGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV--ADRTGHSLLHTLYGQSLRY--- 208 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~-~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~--~~~~g~~l~~~L~~~a~~~--- 208 (661)
+++.++.+++.+++||.. .++..+. ....+||+. +|++.. ..+.|..|+..|..+.++.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~-------la~lgGHSv--------pRTHr~s~plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDL-------LAQLGGHSV--------PRTHRSSGPLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHH-------HHHhcCCCC--------CcccccCCCCCCchHHHHHHHHHHHHhhhc
Confidence 999999999999999975 6666542 234677775 455432 3456788888887776553
Q ss_pred ---CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc-------------CCCCCCCCCCCCh
Q psy15089 209 ---DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA-------------YFSCTSAHTCTGD 272 (661)
Q Consensus 209 ---gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~-------------~~~~~~~~~~tGd 272 (661)
-++|..++.|++|+.++|+|.||...| .+|+...+.++.||+|||||+.. -+++||.+..|||
T Consensus 156 ~pe~~ki~~nskvv~il~n~gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGD 234 (477)
T KOG2404|consen 156 NPELVKILLNSKVVDILRNNGKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGD 234 (477)
T ss_pred ChHHHhhhhcceeeeeecCCCeEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCc
Confidence 278999999999998899999999998 67888888999999999999852 2467899999999
Q ss_pred HHHHHHHcCCccCCCcccccccccccCCC-------ceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHH
Q psy15089 273 GTAMISRAGLPNEDLEFVQFHPTGIYGAG-------CLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMT 345 (661)
Q Consensus 273 G~~~a~~aGa~l~~~ef~q~~p~~~~~~g-------~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~ 345 (661)
|+.|....|+.++||+.+|.||++...+. +|..|++||.|++++|..|+||.+ ||..||++.-.|.
T Consensus 235 gqk~l~klga~liDmd~vqvhptgfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~n-------ELg~RDyvTgei~ 307 (477)
T KOG2404|consen 235 GQKMLMKLGASLIDMDQVQVHPTGFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGN-------ELGTRDYVTGEIQ 307 (477)
T ss_pred HHHHHHHhCccccccceeEecccCccCCCCchhHHHHHHHHHhccCceEEEeccchhhhc-------ccccchhhhHhHH
Confidence 99999999999999999999999976654 577899999999999999999998 5667787766554
Q ss_pred HHHHhcCCCCC-CCCcEEEeCC--------------------------------CCChHHHHhHhhhHHHHHHHHcCC--
Q psy15089 346 IEIREGRGVGP-DKDHVYLQLH--------------------------------HLPPEDLHQRLPGISETAMIFAGV-- 390 (661)
Q Consensus 346 ~e~~~g~g~~~-~~~~v~~d~~--------------------------------~~~~~~l~~~~~~~~~~~~~~~gi-- 390 (661)
.-. . | ..+.+++-+. ++....+...+..|... +.|.
T Consensus 308 kl~-~-----P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~~~~el~s~ln~t~sel~ttl~eY~~~---~~g~~~ 378 (477)
T KOG2404|consen 308 KLK-C-----PIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKYESAELASALNITESELKTTLEEYSKS---FTGKSE 378 (477)
T ss_pred hhc-C-----CcccceeEEEecHhHHHHHhhhhhhHhHHHHHHHhhHHHHHHHhCCCHHHHHHHHHHHHHh---hcCCCC
Confidence 310 0 1 1111222111 12333444444444332 2332
Q ss_pred CCCCC------------C---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhh
Q psy15089 391 DVTRE------------P---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLL 455 (661)
Q Consensus 391 d~~~~------------~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~ 455 (661)
||... + -+|.|..||+|||++||+..||++.+ ...|.|||||||+. ||+||+|||||+||+
T Consensus 379 D~fgrk~f~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~n---g~vi~GlfAAGEvs-GGvHGaNRLgGsSLL 454 (477)
T KOG2404|consen 379 DPFGRKVFPVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKN---GKVIVGLFAAGEVS-GGVHGANRLGGSSLL 454 (477)
T ss_pred CcCCCccccCCCCCccceeEEEEEeeeEEEeccceEechhhhhhccC---CcEeeeeeEcceec-cccccccccCcccce
Confidence 33211 1 36889999999999999999999876 47899999999985 899999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy15089 456 DLVVFGRACAKTI 468 (661)
Q Consensus 456 ~a~v~G~~Ag~~a 468 (661)
+|+||||+||+.|
T Consensus 455 eCVVFGr~Ag~~A 467 (477)
T KOG2404|consen 455 ECVVFGRTAGKAA 467 (477)
T ss_pred eeeeecccchhhH
Confidence 9999999998743
No 39
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=100.00 E-value=3.6e-48 Score=422.79 Aligned_cols=374 Identities=37% Similarity=0.544 Sum_probs=292.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC-----CCCHHHHHHHHHhccCCCCCHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME-----EDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~-----~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
||||||+|+|||+||++|+++|++|+||||+...++++.++.|++........ .|+++.++.++++.+.+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999998877777777777776553222 3678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeee-ccCC------cHHHHHHHHHHHHHh
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCA-VADR------TGHSLLHTLYGQSLR 207 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~-~~~~------~g~~l~~~L~~~a~~ 207 (661)
+++.+++++.+.++||+++|++|....++.+....++++... +|.+. ..+. +|..++..|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPR-------WRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESST-------EEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCcccc-------ceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 999999999999999999999999876665555555554432 13333 3343 788999999999999
Q ss_pred CCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc----------cCCCCCCCCCCCChHHHHH
Q psy15089 208 YDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR----------AYFSCTSAHTCTGDGTAMI 277 (661)
Q Consensus 208 ~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~----------~~~~~~~~~~~tGdG~~~a 277 (661)
+|++|+.++.+++|++++++|+||++.+..+|+.+.|+|++|||||||++. .+....+++.++|||+.||
T Consensus 154 ~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma 233 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMA 233 (417)
T ss_dssp TTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHH
T ss_pred cCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhh
Confidence 999999999999999999999999999878899999999999999999997 4555667789999999999
Q ss_pred HHcCCccCC--CcccccccccccC----CCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHH-HHHHh
Q psy15089 278 SRAGLPNED--LEFVQFHPTGIYG----AGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMT-IEIRE 350 (661)
Q Consensus 278 ~~aGa~l~~--~ef~q~~p~~~~~----~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~-~e~~~ 350 (661)
+++||.+.+ |++++++|....+ .+.++...+...+++++|.+|+||+++.. +++.+...+. .++..
T Consensus 234 ~~aGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~vn~~G~Rf~~e~~-------~~~~~~~~~~~~~~~~ 306 (417)
T PF00890_consen 234 LRAGAALSNDPMEFIQWGPPSVPGIRDPSGILITEALPGPGGIWVNADGERFMNEDA-------SYDDVAQAILQREIRE 306 (417)
T ss_dssp HHTTCCEESTTTTCEEEEEEEETSTCCTTTSBHHTHHHHTT-EEEETTSSBTHGGGS--------HHHHHHHHH-HHHHT
T ss_pred hccCccccCccchhhccCCcccccccccccchhhhhhccceeEEEcCCCcCcccccc-------cccHHHHHHHHHhhhc
Confidence 999999999 9999999987663 33334455566789999999999997543 4566666666 34444
Q ss_pred cCCCCCCCCcEEEeCCC-CChHHHHhHhhhHHHHHHHHcC------CCCCCCCee-------eeccccccccCcccCCCC
Q psy15089 351 GRGVGPDKDHVYLQLHH-LPPEDLHQRLPGISETAMIFAG------VDVTREPIP-------VLPTVHYNMGGIPTNYKG 416 (661)
Q Consensus 351 g~g~~~~~~~v~~d~~~-~~~~~l~~~~~~~~~~~~~~~g------id~~~~~i~-------v~p~~~~~~GGi~vd~~~ 416 (661)
+.+ ...+|+++++ ++++.|.++++.|++.+..... .++.+.++| +.|..|+++|||+||.++
T Consensus 307 ~~~----~~~~~~~~~~g~~~~~L~~tv~~yn~~~~~g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~vd~~~ 382 (417)
T PF00890_consen 307 PRG----DAYVYLIFDGGIDPEGLAATVERYNEECEAGVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKVDEDA 382 (417)
T ss_dssp TTS----ECBEEEEETTTSHHHHHHHHCHHHHHHHHHTSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEBETTS
T ss_pred ccC----CcceEEeeccccChhhhhhhhhHHHHhhhcccccccccccccccCcccccccccccccccceeeEEeeeCcCc
Confidence 322 1347999988 9999999999999998864222 223344344 889999999999999999
Q ss_pred eEEeecCCCCccccceeeeccccccCCCCCCccchhhh
Q psy15089 417 QVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSL 454 (661)
Q Consensus 417 ~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l 454 (661)
||++.+ .++|||||||||++++++||+++++||+|
T Consensus 383 ~vl~~~---g~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 383 QVLDAD---GQPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp EEETTT---CEEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CccCCC---CCEeCCEEEEEcccccccCCccCCcccCC
Confidence 998876 78999999999998789999999999986
No 40
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=100.00 E-value=3.7e-47 Score=417.09 Aligned_cols=374 Identities=34% Similarity=0.495 Sum_probs=290.4
Q ss_pred cEEEECCcHHHHHHHHHhHHCC-CcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccCCCCCH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEG-FKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSDWLGDQ 133 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G-~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~~l~~~ 133 (661)
||||||+|+||++||++|+++| ++|+||||....++.+..+.|+++...... ..++++.++.++++.+.+.+++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 999999999888888877778877654321 2467788888998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccC--CcHHHHHHHHHHHHHhCCcE
Q psy15089 134 DAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVAD--RTGHSLLHTLYGQSLRYDCN 211 (661)
Q Consensus 134 ~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~--~~g~~l~~~L~~~a~~~gv~ 211 (661)
++++.+++.+.+.++||. +++.|..... ...+++.. +|.+...+ ..+..++..|.+.+++.|++
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~ 146 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDL-----IQLGGHSV--------PRAHRPTGGAGSGAEIVQKLYKKAKKEGID 146 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccc-----cccCCcCC--------CccccCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 999999999999999999 7776643211 11122221 22222222 35678999999999999999
Q ss_pred EEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc------cCC------CCCCCCCCCChHHHHHH
Q psy15089 212 YFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGR------AYF------SCTSAHTCTGDGTAMIS 278 (661)
Q Consensus 212 i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~------~~~------~~~~~~~~tGdG~~~a~ 278 (661)
++.++.+++|+.+ +++|+|+.+.+ .+++...+.||.||+|||+++. .|. .+++++.++|||+.||+
T Consensus 147 i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~ 225 (439)
T TIGR01813 147 TRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAE 225 (439)
T ss_pred EEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHH
Confidence 9999999999986 57999998875 5666667899999999999997 342 23466789999999999
Q ss_pred HcCCccCCCcccccccccccCC-CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHH--------
Q psy15089 279 RAGLPNEDLEFVQFHPTGIYGA-GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIR-------- 349 (661)
Q Consensus 279 ~aGa~l~~~ef~q~~p~~~~~~-g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~-------- 349 (661)
++||.+.+|+++|+||+..... +.+....++..++++||.+|+||++|..+ ++.+.+++..+..
T Consensus 226 ~aGa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vn~~G~RF~~E~~~-------~~~~~~~~~~~~~~~~~~i~d 298 (439)
T TIGR01813 226 KIGAALVDMDYIQAHPTASPDEGGFLISEAVRGYGAILVNKTGERFMNELAT-------RDTVSDAILAQPGKSAYLIFD 298 (439)
T ss_pred HcCCCccCCchhheecccccCCcceeehhhcccCcEEEECCCCCCccccCCc-------HHHHHHHHHhCCCCceEEEEC
Confidence 9999999999999999765443 34455556667899999999999987543 2332222221100
Q ss_pred -------------hcCCCCCCCCcEEEe-------CCCCChHHHHhHhhhHHHHHHHHcCCCC------------CCCC-
Q psy15089 350 -------------EGRGVGPDKDHVYLQ-------LHHLPPEDLHQRLPGISETAMIFAGVDV------------TREP- 396 (661)
Q Consensus 350 -------------~g~g~~~~~~~v~~d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~------------~~~~- 396 (661)
...++ .+..| .-+++++.|.+++..|++.|. .|.|+ .+.|
T Consensus 299 ~~~~~~~~~~~~~~~~g~-----~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~--~g~D~~f~r~~~~~~~i~~~Pf 371 (439)
T TIGR01813 299 DDVYKKAEMVDNYYRLGV-----AYKGDSLEELAKQFGIPAAALKKTVKDYNEYVA--SGKDTPFGRPMDMPDDLSKSPY 371 (439)
T ss_pred HHHHHhhhhHHHHHhcCc-----EEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHh--cCCCcccCCCCCCCCCCCCCCE
Confidence 00110 01111 125788889999999998876 46553 2456
Q ss_pred --eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHH
Q psy15089 397 --IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAK 466 (661)
Q Consensus 397 --i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~ 466 (661)
+++.|..|+++|||+||.++||++.| .++|||||||||++ +|+||.||++|+++++|++||++||+
T Consensus 372 ya~~~~~~~~~t~GGl~~d~~~~vl~~~---g~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 372 YAIKVTPGVHHTMGGVKINTKAEVLDAQ---GKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EEEEEEcCccccccCeEECCCCeEECCC---CCEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 88999999999999999999999987 68999999999986 68999999999999999999999984
No 41
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=1e-46 Score=451.66 Aligned_cols=395 Identities=29% Similarity=0.402 Sum_probs=300.7
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhcc-CC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGS-DW 129 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g-~~ 129 (661)
..++||||||+|.||++||++|+++|++|+||||....++++..+.||+++..... ..|+.+.+..++...+ .+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~ 486 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG 486 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence 45799999999999999999999999999999999888888888888887654321 2466777777877655 57
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccC-------CcHHHHHHHHH
Q psy15089 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVAD-------RTGHSLLHTLY 202 (661)
Q Consensus 130 l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~-------~~g~~l~~~L~ 202 (661)
.+|+++++.+++++++.++||+++|++|.... .+++++. +|.++..+ ..|..++..|.
T Consensus 487 ~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~-------~~gg~~~--------~r~~~~~~~~~g~~~~~G~~i~~~l~ 551 (1167)
T PTZ00306 487 HCDPGLVKTLSVKSADAISWLSSLGVPLTVLS-------QLGGASR--------KRCHRAPDKKDGTPVPIGFTIMRTLE 551 (1167)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCCceeee-------ccCCCCC--------CceeecCcccCCCcCCcHHHHHHHHH
Confidence 89999999999999999999999999996421 1234332 23333221 12667888888
Q ss_pred HHHHh---CCcEEEEeEEEEEEEEeC---------CEEEEEEEEEc--CCCcEEEEEcCeEEEcCCcccccC--------
Q psy15089 203 GQSLR---YDCNYFVEYFALDLIIEN---------GECKGVIALCL--EDGSIHRFNANNTVLATGGYGRAY-------- 260 (661)
Q Consensus 203 ~~a~~---~gv~i~~~~~v~~l~~~~---------g~v~Gv~~~~~--~~G~~~~i~Ak~VIlAtGg~~~~~-------- 260 (661)
+.+++ .|++|++++.+++|+.++ ++|+||++.+. .+|+.+.|+||+||||||||+.+.
T Consensus 552 ~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~ 631 (1167)
T PTZ00306 552 DHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLRE 631 (1167)
T ss_pred HHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHH
Confidence 87765 489999999999999864 38999998763 278888999999999999999853
Q ss_pred -C------CCCCCCCCCChHHHHHHHcCCccCCCcccccccccccCC-------CceecccccCCCcEEEcCCCCccccc
Q psy15089 261 -F------SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGA-------GCLITEGCRGEGGYLINSEGERFMER 326 (661)
Q Consensus 261 -~------~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~-------g~l~~e~~~~~g~~lvn~~G~rf~~~ 326 (661)
. .+++++.++|||+.||+++||.+.+|+++|+||+++..+ +.+..+.+++.|+++||.+|+||++|
T Consensus 632 y~p~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~ilVN~~GkRF~nE 711 (1167)
T PTZ00306 632 YAPQLSGFPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVNE 711 (1167)
T ss_pred hCccccCCCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCcccceeeehhcCCceEEECCCCCCcccc
Confidence 1 234567899999999999999999999999999754322 23344555677899999999999986
Q ss_pred cccccccccchhHhhhhHHHHHHhcCC--C------------------CC-----CCCcEEE--e-------CCCCChHH
Q psy15089 327 YAPVAKDLASRDVVSRSMTIEIREGRG--V------------------GP-----DKDHVYL--Q-------LHHLPPED 372 (661)
Q Consensus 327 ~~p~~~~l~~rd~~~~~i~~e~~~g~g--~------------------~~-----~~~~v~~--d-------~~~~~~~~ 372 (661)
.. +++.+++++..+.....+ . .. ...++.. | .-+++++.
T Consensus 712 ~~-------~~~~~~~ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~~ 784 (1167)
T PTZ00306 712 LD-------LRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVEN 784 (1167)
T ss_pred cC-------cHHHHHHHHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHHH
Confidence 43 344444444332211000 0 00 0001111 1 12578889
Q ss_pred HHhHhhhHHHHHHHHcCCCC-------------CCCC---eeeeccccccccCcccCCCCeEEeecC-----CCCccccc
Q psy15089 373 LHQRLPGISETAMIFAGVDV-------------TREP---IPVLPTVHYNMGGIPTNYKGQVLTHVN-----GQDKIIHG 431 (661)
Q Consensus 373 l~~~~~~~~~~~~~~~gid~-------------~~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~-----~~~T~ipG 431 (661)
|++++..|++.|. .|.|. .+.| +++.|..|+|+||+.||.++||++.|. ...++|||
T Consensus 785 L~aTV~rYN~~~~--~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIpG 862 (1167)
T PTZ00306 785 LHRTLETYERLST--KKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILG 862 (1167)
T ss_pred HHHHHHHHHHHHh--cCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeCc
Confidence 9999999999886 45542 1344 488999999999999999999998752 13579999
Q ss_pred eeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCCC
Q psy15089 432 LYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPG 475 (661)
Q Consensus 432 LyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 475 (661)
||||||++ +++||.||++|+++++|++||++||++|+++++..
T Consensus 863 LYAAGe~~-gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~ 905 (1167)
T PTZ00306 863 LFGAGEVT-GGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKK 905 (1167)
T ss_pred eEecceec-cccccCCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999986 68999999999999999999999999999987653
No 42
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=3.7e-46 Score=412.14 Aligned_cols=392 Identities=18% Similarity=0.205 Sum_probs=281.8
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC--CCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP--TRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSD 128 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~--~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~ 128 (661)
..++||||||+|+||++||++|+++|++|+||||... .++++..+.| +.+..... ..++.+.++.++.+.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 3569999999999999999999999999999999864 4555555544 54443321 23456778888888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC
Q psy15089 129 WLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY 208 (661)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~ 208 (661)
+.+++++++.+++++.+.++||.++|++|....++...... .+.... ..|..++..|.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~--------------~~~~~~--g~g~~l~~~l~~~~~~~ 144 (466)
T PRK08274 81 GRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVAR--------------TNAFFW--GGGKALVNALYRSAERL 144 (466)
T ss_pred CCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCC--------------CCeeec--CCHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999765443321100 011111 12678999999999999
Q ss_pred CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc------CCC-------CCCCCCCCChHHH
Q psy15089 209 DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA------YFS-------CTSAHTCTGDGTA 275 (661)
Q Consensus 209 gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~------~~~-------~~~~~~~tGdG~~ 275 (661)
|++++.++.|++|+.++++|+|+.+.+ .+|+...|+||.||+||||++.+ +.. ..+++.++|||+.
T Consensus 145 gv~i~~~t~v~~l~~~~g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ 223 (466)
T PRK08274 145 GVEIRYDAPVTALELDDGRFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLK 223 (466)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHH
Confidence 999999999999999889999998753 56666779999999999998864 211 2456789999999
Q ss_pred HHHHcCCccCCCcccccccccccCCC-----ceecccccCCCcEEEcCCCCccccccccccccccchhHh----------
Q psy15089 276 MISRAGLPNEDLEFVQFHPTGIYGAG-----CLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVV---------- 340 (661)
Q Consensus 276 ~a~~aGa~l~~~ef~q~~p~~~~~~g-----~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~---------- 340 (661)
|++++||.+.+ ++.|+||+.+.... .........+++++||.+|+||++|..+... ..+...
T Consensus 224 ma~~~Ga~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vn~~G~RF~nE~~~~~~--~~~~~~~~~~~~~~~~ 300 (466)
T PRK08274 224 ALLDAGADRIG-DPSQCHAVAIDARAPLYDGGICTRIDCVPLGIVVNRDGERFYDEGEDFWP--KRYAIWGRLVAQQPGQ 300 (466)
T ss_pred HHHHcCCCccC-CccceeeEeecCCCCccCCcceeeecccceEEEEcCCCcEEEecCCcccc--chHHHHHHHHHcCCCc
Confidence 99999999876 56778876542211 1111222234679999999999997542110 000011
Q ss_pred -hhhHHHHHHhcCCCCCCCCcEEE-------eCCCCChHHHHhHhhhHHHHHHHHcCC--------------CCCC----
Q psy15089 341 -SRSMTIEIREGRGVGPDKDHVYL-------QLHHLPPEDLHQRLPGISETAMIFAGV--------------DVTR---- 394 (661)
Q Consensus 341 -~~~i~~e~~~g~g~~~~~~~v~~-------d~~~~~~~~l~~~~~~~~~~~~~~~gi--------------d~~~---- 394 (661)
...|+++........+....+.. +.-+++++.|++++..|++.|.. |. +|.+
T Consensus 301 ~~~~i~d~~~~~~~~~~~~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~~--g~~~~~~~d~~~~~~~~~~~~~~~ 378 (466)
T PRK08274 301 IAYQIFDAKAIGRFMPPVFPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVRP--GPFDPTVLDDCGTEGLTPPKSHWA 378 (466)
T ss_pred eEEEEeCchhHhhcCcccCCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhccc--cCCCcccccccccccCCCCccccc
Confidence 11111111110000000000000 11247888899999999988752 32 1111
Q ss_pred CC--------eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHH
Q psy15089 395 EP--------IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAK 466 (661)
Q Consensus 395 ~~--------i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~ 466 (661)
.| +++.|..|+++||++||.++||++.+ .++||||||||||+++++||+||++|+++++|+|||++||+
T Consensus 379 ~~i~~~Pfya~~~~p~~~~t~GGl~~d~~~~vl~~~---g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~ 455 (466)
T PRK08274 379 RPIDTPPFYAYPVRPGITFTYLGLKVDEDARVRFAD---GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGE 455 (466)
T ss_pred CccCCCCeEEEEeccceeeecccEEECCCceEECCC---CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHH
Confidence 12 48999999999999999999999987 68999999999997533999999999999999999999999
Q ss_pred HHHHhcC
Q psy15089 467 TIAEENK 473 (661)
Q Consensus 467 ~aa~~~~ 473 (661)
+|+++++
T Consensus 456 ~aa~~~~ 462 (466)
T PRK08274 456 EAARHAQ 462 (466)
T ss_pred HHHHHhh
Confidence 9998864
No 43
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=3.2e-45 Score=406.43 Aligned_cols=401 Identities=24% Similarity=0.274 Sum_probs=282.1
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC------CCCCCHHHHHHHHHhcc
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN------MEEDDWHWHMYDTVKGS 127 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~------~~~d~~~~~~~d~~~~g 127 (661)
.++.++||||||+|.||++||++|+++|++|+||||....++++..+.|.+.+..+. -..|+.+.++.++.+.+
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~ 95 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAV 95 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999887667666554433322111 12477788888877888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCccccc-------ccCCcc--cccC-CCCccceeeec---cCC-c
Q psy15089 128 DWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQR-------AFGGQS--LKYG-KGGQAHRCCAV---ADR-T 193 (661)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~-------~~gg~~--~~~~-~g~~~~r~~~~---~~~-~ 193 (661)
.+.+++++++.+++++.+.++||+++|++|.....+..... .+.+.. ..+. .....+|.+.. ... .
T Consensus 96 ~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (492)
T PRK07121 96 GPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGG 175 (492)
T ss_pred CCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCc
Confidence 88999999999999999999999999999975422111000 000000 0000 00011222221 111 4
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEc-CeEEEcCCccccc------CC----
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNA-NNTVLATGGYGRA------YF---- 261 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~~------~~---- 261 (661)
|..++..|.+.+++.|++++.++.+++|+.+ +|+|+||.+. .+++...|+| |.|||||||++.+ |.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~--~~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~p~~~ 253 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEAR--RYGETVAIRARKGVVLAAGGFAMNREMVARYAPAYA 253 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEE--eCCcEEEEEeCCEEEECCCCcCcCHHHHHHhCCccc
Confidence 7889999999999999999999999999987 4799999885 3566678999 9999999999962 22
Q ss_pred --CCCCCCCCCChHHHHHHHcCCccCCCcccccccccccCCCceecccccCCCcEEEcCCCCcccccccccccccc----
Q psy15089 262 --SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLA---- 335 (661)
Q Consensus 262 --~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~---- 335 (661)
.+.+++.++|||+.||+++||.+.+|+++|+++....+ .. ..++++||.+|+||++|..+.. .+.
T Consensus 254 ~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~~-~~-------~~~~i~Vn~~G~RF~nE~~~~~-~~~~~~~ 324 (492)
T PRK07121 254 GGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYPP-SA-------LLRGILVNARGQRFVNEDTYGA-RIGQFIL 324 (492)
T ss_pred CCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccCC-CC-------cCCeEEECCCCCEeecCCCcHH-HHHHHHH
Confidence 23456689999999999999999999999876543221 11 1368999999999999754321 000
Q ss_pred --c----hhHhhhhHHHHHHhc-C-CCCCCCCcEE-Ee-------CCCCChHHHHhHhhhHHHHHHHHcCCCCC--C---
Q psy15089 336 --S----RDVVSRSMTIEIREG-R-GVGPDKDHVY-LQ-------LHHLPPEDLHQRLPGISETAMIFAGVDVT--R--- 394 (661)
Q Consensus 336 --~----rd~~~~~i~~e~~~g-~-g~~~~~~~v~-~d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~~--~--- 394 (661)
+ .-++...+....... . ......+.++ .| .-+++++.|++++..|++.|. .|.|+. +
T Consensus 325 ~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~tv~~yN~~~~--~G~D~~f~r~~~ 402 (492)
T PRK07121 325 EQPGGTAYLIVDEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQATVDAYNRAAA--GGEDPPFHKQPE 402 (492)
T ss_pred hccCCcEEEEEeHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHHHHHHHHHhh--cCCCcccCCCcc
Confidence 0 001111111111000 0 0000000011 11 124788889999999999886 455532 1
Q ss_pred -------CC---eeeec----cccccccCcccCCC-CeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHH
Q psy15089 395 -------EP---IPVLP----TVHYNMGGIPTNYK-GQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVV 459 (661)
Q Consensus 395 -------~~---i~v~p----~~~~~~GGi~vd~~-~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v 459 (661)
.| +++.| ..++|+||+.||.+ +||++.| .++|||||||||++ +++||.||++|+++++|++
T Consensus 403 ~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~---g~pI~GLYAaG~~~-gg~~g~~y~~G~~l~~~~~ 478 (492)
T PRK07121 403 WLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRAD---GAPIPGLYAAGRCA-SGIASNGYVSGLSLADCSF 478 (492)
T ss_pred cccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCC---CCCcCceEeccccc-ccCCCCCCCCccccchhHH
Confidence 22 34444 89999999999999 9999988 68999999999985 6899999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy15089 460 FGRACAKTIAEE 471 (661)
Q Consensus 460 ~G~~Ag~~aa~~ 471 (661)
||++||++|++.
T Consensus 479 ~GriAg~~aa~~ 490 (492)
T PRK07121 479 FGRRAGRHAAAR 490 (492)
T ss_pred HHHHHHHHHHhh
Confidence 999999999865
No 44
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=6e-45 Score=404.69 Aligned_cols=400 Identities=21% Similarity=0.257 Sum_probs=281.0
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccC-ceEEccCCC-----CCCCHHHHHHHHHhcc
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQG-GINAALGNM-----EEDDWHWHMYDTVKGS 127 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~G-g~~~~~~~~-----~~d~~~~~~~d~~~~g 127 (661)
.++.++||||||+| ||++||++|++.|++|+||||....++++..+.| |+....... ..|+.+..+.++....
T Consensus 3 ~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 81 (513)
T PRK12837 3 AWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVV 81 (513)
T ss_pred CCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHh
Confidence 35568999999999 9999999999999999999998877777766655 353322111 1344455555555555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-CCCCcccCCC----CcccccccCCcccccCCC-------Ccc---------c-e
Q psy15089 128 DWLGDQDAIHYMTREAPKAVIELEN-YGMPFSRTTD----GKIYQRAFGGQSLKYGKG-------GQA---------H-R 185 (661)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~~~~~----g~~~~~~~gg~~~~~~~g-------~~~---------~-r 185 (661)
..+.++++++.|++++.+.++||++ .|++|..... +.......+++...+... ... . +
T Consensus 82 ~~~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
T PRK12837 82 GDRTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERL 161 (513)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhh
Confidence 5667999999999999999999987 5999864321 100000111100000000 000 0 0
Q ss_pred eeeccC--CcHHHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcC-eEEEcCCccccc--
Q psy15089 186 CCAVAD--RTGHSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNAN-NTVLATGGYGRA-- 259 (661)
Q Consensus 186 ~~~~~~--~~g~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak-~VIlAtGg~~~~-- 259 (661)
.+.... ..|..++..|.+.+.+. |++++.++.+++|+.++++|+||++. .+|+...|+|+ +|||||||++++
T Consensus 162 ~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~--~~g~~~~i~A~k~VIlAtGG~~~n~~ 239 (513)
T PRK12837 162 GAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVE--RGGERRRVRARRGVLLAAGGFEQNDD 239 (513)
T ss_pred ccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEE--ECCcEEEEEeCceEEEeCCCccCCHH
Confidence 000000 13667888888777664 99999999999999999999999875 36777789995 899999999876
Q ss_pred ----CC------CCCCCCCCCChHHHHHHHcCCccCCCcccccccccccCCCceecccccCCCcEEEcCCCCcccccccc
Q psy15089 260 ----YF------SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAP 329 (661)
Q Consensus 260 ----~~------~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p 329 (661)
|. .+++++.+||||+.||+++||.+.+|+++|++|....+.+. .....+..++++||.+|+||++|..
T Consensus 240 m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~-~~~~~~~~~~i~Vn~~GkRF~nE~~- 317 (513)
T PRK12837 240 MRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGR-SAFALWFTGGIFVDQHGERFVNESA- 317 (513)
T ss_pred HHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCc-ceeccccCceEEECCCCCCcccCCC-
Confidence 53 34567789999999999999999999999999854433221 1122334578999999999998643
Q ss_pred ccccccchhHhhhhHHHHHHhcCC----C----------------CC--------CCCcEEE--e-------CCCCChHH
Q psy15089 330 VAKDLASRDVVSRSMTIEIREGRG----V----------------GP--------DKDHVYL--Q-------LHHLPPED 372 (661)
Q Consensus 330 ~~~~l~~rd~~~~~i~~e~~~g~g----~----------------~~--------~~~~v~~--d-------~~~~~~~~ 372 (661)
+++.+++++..+...+.. + .+ ...++++ | .-+++++.
T Consensus 318 ------~~~~~~~a~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDTleELA~k~gid~~~ 391 (513)
T PRK12837 318 ------PYDRLGRAVIAEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADTLEELAAKIGVPADA 391 (513)
T ss_pred ------cHhHHHHHHHhhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCCHHHHHHHcCCCHHH
Confidence 344444444433221110 0 00 0011111 1 12468888
Q ss_pred HHhHhhhHHHHHHHHcCCCC--C---------------------CCC---eeeeccccccccCcccCCCCeEEeecCCCC
Q psy15089 373 LHQRLPGISETAMIFAGVDV--T---------------------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQD 426 (661)
Q Consensus 373 l~~~~~~~~~~~~~~~gid~--~---------------------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~ 426 (661)
|++++..|++.|. .|.|+ . +.| +++.|..++|+||++||.++||++.| .
T Consensus 392 L~~Tv~~yN~~~~--~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~~~qVl~~~---g 466 (513)
T PRK12837 392 LTATVARFNGFAA--AGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDTAARVLDTD---G 466 (513)
T ss_pred HHHHHHHHHHHHh--cCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECCCceEECCC---C
Confidence 9999999999886 34442 1 122 57788999999999999999999988 6
Q ss_pred ccccceeeeccccccCCCCCCccc-hhhhhhHHHHHHHHHHHHHH
Q psy15089 427 KIIHGLYAAGEASCSSVHGANRLG-ANSLLDLVVFGRACAKTIAE 470 (661)
Q Consensus 427 T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a~v~G~~Ag~~aa~ 470 (661)
++|||||||||++ ++++|.+|++ |++++.|++||++||++|+.
T Consensus 467 ~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 467 RPIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CEeCCceeccccc-ccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 8999999999986 6899999986 88999999999999999964
No 45
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-45 Score=407.52 Aligned_cols=409 Identities=20% Similarity=0.256 Sum_probs=287.1
Q ss_pred CCCCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHH
Q psy15089 50 REYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTV 124 (661)
Q Consensus 50 ~~~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~ 124 (661)
.....++.++||||||+| +|++||+.|++.|++|+||||....++.+..+.|+++...... ..|+.+..+.++.
T Consensus 8 ~~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~ 86 (564)
T PRK12845 8 AGTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLD 86 (564)
T ss_pred CCCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHH
Confidence 444456778999999999 8999999999999999999998877777777767775432111 2477788888888
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCcccCCCC-cccccccCCc----ccccC--------------CCCc--
Q psy15089 125 KGSDWLGDQDAIHYMTREAPKAVIELEN-YGMPFSRTTDG-KIYQRAFGGQ----SLKYG--------------KGGQ-- 182 (661)
Q Consensus 125 ~~g~~l~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~~~~~g-~~~~~~~gg~----~~~~~--------------~g~~-- 182 (661)
+......++++++.|++++++.++||++ .|+.|.....- .++....++. ++... ....
T Consensus 87 ~~~~~~~~~~li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (564)
T PRK12845 87 SVVGGSAPAERSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVME 166 (564)
T ss_pred HHhCCCCCHHHHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCcccc
Confidence 8777889999999999999999999998 67776432110 0110011110 00000 0000
Q ss_pred --------------------cceee------------------eccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe
Q psy15089 183 --------------------AHRCC------------------AVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE 224 (661)
Q Consensus 183 --------------------~~r~~------------------~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~ 224 (661)
.+|.. ......|..|+..|.+.+++.|++|+.++.+++|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~ 246 (564)
T PRK12845 167 VSIPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSLVRLTDD 246 (564)
T ss_pred ccccccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCEEEecCEeeEEEec
Confidence 00000 0001246788999999999999999999999999988
Q ss_pred CCEEEEEEEEEcCCCcEEEEEc-CeEEEcCCccccc------CCC-------CCCCCCCCChHHHHHHHcCCccCCCccc
Q psy15089 225 NGECKGVIALCLEDGSIHRFNA-NNTVLATGGYGRA------YFS-------CTSAHTCTGDGTAMISRAGLPNEDLEFV 290 (661)
Q Consensus 225 ~g~v~Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~~------~~~-------~~~~~~~tGdG~~~a~~aGa~l~~~ef~ 290 (661)
+|+|+||++.+ +|+.+.|.| |+||||||||+++ |.+ +++++.+||||+.||+++||.+.+|++.
T Consensus 247 ~g~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~ 324 (564)
T PRK12845 247 GGRVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQA 324 (564)
T ss_pred CCEEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCccc
Confidence 89999998753 555556776 7999999999986 432 4567899999999999999999999999
Q ss_pred ccccccccCCC----ceecccccCCCcEEEcCCCCccccccccccccccchhH-----------hhhhHHHH-HHh----
Q psy15089 291 QFHPTGIYGAG----CLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDV-----------VSRSMTIE-IRE---- 350 (661)
Q Consensus 291 q~~p~~~~~~g----~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~-----------~~~~i~~e-~~~---- 350 (661)
|+||+.....+ .++.+. ..+|+++||.+|+||++|..+.. .+. +.+ ....|+++ ...
T Consensus 325 ~~~p~~~~~~~~~~~~~~~~~-~~~g~i~VN~~G~RF~nE~~~~~-~~~-~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~ 401 (564)
T PRK12845 325 WWFPAVAPLPGGAPAVMLAER-SLPGSLIVDQTGRRFVNEATDYM-SFG-QRVLERERAGDPVESMWIVFDQQYRNSYVF 401 (564)
T ss_pred eEecccccCCCCCcccchhhh-ccCceEEECCCCCEecCCCCchh-HHH-HHHHhhhccCCCCceEEEEECchhhhhccc
Confidence 99997543221 222221 13578999999999999854321 000 000 00011110 000
Q ss_pred cCCCCCC--------CCcEEE--e-------CCCCChHHHHhHhhhHHHHHHHHcCCCCC--------------------
Q psy15089 351 GRGVGPD--------KDHVYL--Q-------LHHLPPEDLHQRLPGISETAMIFAGVDVT-------------------- 393 (661)
Q Consensus 351 g~g~~~~--------~~~v~~--d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~~-------------------- 393 (661)
+....+. ..+... | .-+++++.|++++..|++.|. .|.|+.
T Consensus 402 ~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~--~G~D~dFgr~~~~~~~~~gd~~~~~~ 479 (564)
T PRK12845 402 AAELFPRMPIPQAWYDAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAA--AGVDSDFGRGRSAYDRYYGDPTVTPN 479 (564)
T ss_pred ccccCCCCcccHhHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCCCCCCCCchhhhhcCCCcCCCC
Confidence 0000000 011111 1 125788999999999999886 354431
Q ss_pred -------CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc-hhhhhhHHHHHH
Q psy15089 394 -------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG-ANSLLDLVVFGR 462 (661)
Q Consensus 394 -------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a~v~G~ 462 (661)
+.| +++.|..+.|+||++||.++||++.| .++||||||||+++ ++++|.+|++ |++++.|++||+
T Consensus 480 ~~l~pi~~gPfYA~~~~p~~~~T~GGl~id~~~qVLd~d---g~pI~GLYAaG~~~-gg~~g~~Y~g~G~~lg~a~~fGr 555 (564)
T PRK12845 480 PNLRPLDKGPFYAVKMVLSDLGTCGGLRADERARVLRED---GSVIDGLYAIGNTA-ANAFGATYPGAGATIGQGLVYGY 555 (564)
T ss_pred cccCccccCCEEEEEeccccceecCCeeECCCceEECCC---CCCCCCeeEeeeec-cccccCCCCCcchhhHHHHHHHH
Confidence 122 57788999999999999999999987 68999999999986 6899999997 999999999999
Q ss_pred HHHHHHHH
Q psy15089 463 ACAKTIAE 470 (661)
Q Consensus 463 ~Ag~~aa~ 470 (661)
+||++|++
T Consensus 556 iAg~~aa~ 563 (564)
T PRK12845 556 IAAQDAAA 563 (564)
T ss_pred HHHHHHhc
Confidence 99999874
No 46
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-44 Score=404.03 Aligned_cols=409 Identities=22% Similarity=0.323 Sum_probs=284.3
Q ss_pred ccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHH---HHHHhc
Q psy15089 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHM---YDTVKG 126 (661)
Q Consensus 55 ~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~---~d~~~~ 126 (661)
++.++||||||+|+||++||+.|++.|++|+||||....++.+..++|+++...... ..++.+..+ .++...
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 82 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGD 82 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcc
Confidence 455799999999999999999999999999999998777777777777764322110 123444322 233322
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCC-CcccccccCCcccccC---C----------------------C
Q psy15089 127 SDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTD-GKIYQRAFGGQSLKYG---K----------------------G 180 (661)
Q Consensus 127 g~~l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~-g~~~~~~~gg~~~~~~---~----------------------g 180 (661)
..+..++++++.+++++++.++||+++|++|...+. ..++....++++.... . +
T Consensus 83 ~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (557)
T PRK12844 83 QGPASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPG 162 (557)
T ss_pred cccCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccc
Confidence 233478899999999999999999999999975421 1111111222211000 0 0
Q ss_pred --------------Cc-----------cceeeec------cCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEE
Q psy15089 181 --------------GQ-----------AHRCCAV------ADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECK 229 (661)
Q Consensus 181 --------------~~-----------~~r~~~~------~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~ 229 (661)
.. ..|++.. ....|..++..|.+.+++.|++++.++.|++|+.++++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~ 242 (557)
T PRK12844 163 TVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVV 242 (557)
T ss_pred ccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEE
Confidence 00 0011110 0124678999999999999999999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEc-CeEEEcCCccccc------CCC-------CCCCCCCCChHHHHHHHcCCccCCCcccccccc
Q psy15089 230 GVIALCLEDGSIHRFNA-NNTVLATGGYGRA------YFS-------CTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295 (661)
Q Consensus 230 Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~~------~~~-------~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~ 295 (661)
||++. .+|+.+.|.| ++|||||||++.+ |.+ +.+++.++|||+.||+++||.+.+|+++|++|+
T Consensus 243 Gv~~~--~~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~~~~p~ 320 (557)
T PRK12844 243 GVVVV--RDGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAWWVPG 320 (557)
T ss_pred EEEEE--ECCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccccccccccCc
Confidence 99886 4677778999 5899999999984 543 234678999999999999999999999999997
Q ss_pred cccCCC----ceecccccCCCcEEEcCCCCcccccccccccccc----c------hhHhhhhHHHHHHhcCCCC--C---
Q psy15089 296 GIYGAG----CLITEGCRGEGGYLINSEGERFMERYAPVAKDLA----S------RDVVSRSMTIEIREGRGVG--P--- 356 (661)
Q Consensus 296 ~~~~~g----~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~----~------rd~~~~~i~~e~~~g~g~~--~--- 356 (661)
...+.+ .+.......+++++||.+|+||++|..+.. .+. . .-+....+......+ ... +
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~I~D~~~~~~~~~~-~~~~~~~~~ 398 (557)
T PRK12844 321 APLPNGGPRPYMHNSERSKPGSIIVDRAGRRFVNEAGSYM-EVGRAMYAQDAVPAWMIMDSRYRKRYLFG-TIPPGPTPQ 398 (557)
T ss_pred cccCCCCcccccccccccCCcEEEECCCCCccccCCCcHH-HHHHHHHhCCCceEEEEECchHHhhcCcc-ccCCccChH
Confidence 654322 111112234678999999999999865421 110 0 001111111100000 000 0
Q ss_pred --CCCcEEE---------eCCCCChHHHHhHhhhHHHHHHHHcCCCCC---------------------------CCC--
Q psy15089 357 --DKDHVYL---------QLHHLPPEDLHQRLPGISETAMIFAGVDVT---------------------------REP-- 396 (661)
Q Consensus 357 --~~~~v~~---------d~~~~~~~~l~~~~~~~~~~~~~~~gid~~---------------------------~~~-- 396 (661)
...+... +.-+++++.|++++..|++.|. .|.|+. +.|
T Consensus 399 ~~~~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~~~~~~~~l~pi~~~PfY 476 (557)
T PRK12844 399 EWLDSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAA--TGTDPDFHRGESAYDRYYGDPTNKPNPSLGPLDKPPFY 476 (557)
T ss_pred HHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCCccCCCcchhhccccCCcCCCCcccCcCCCCCeE
Confidence 0001111 1125788899999999999886 344431 122
Q ss_pred -eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc-hhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 397 -IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG-ANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 397 -i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
+++.|..+.|+||+.||.++||++.+ ..+||||||||+++ ++++|.+|++ |++++.|++||++||++|++..+
T Consensus 477 A~~~~~~~~~T~GGl~in~~~qVld~~---g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 477 AVRMVPGDVGTSGGLLTDEHARVLRED---GSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred EEEEeccccEECCCccCCCCceEECCC---CCCccceeeccccc-cccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 56778899999999999999999987 68999999999986 6899999998 89999999999999999998764
No 47
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=5.8e-44 Score=400.37 Aligned_cols=401 Identities=19% Similarity=0.212 Sum_probs=278.9
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC--CCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF--PTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSDW 129 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~--~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~~ 129 (661)
.++||||||+|.|||+||+.|+++|++|+||||.. ..++++..++|++++..... ..|+++.++.|+++.+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 57999999999999999999999999999999988 56777878888887654322 168899999999998887
Q ss_pred CCCHH-----HHHHHHHH-HHHHHHHHHHCCCCcccCCC----CcccccccCCcccccCCCCccceeeeccCCcHHHHHH
Q psy15089 130 LGDQD-----AIHYMTRE-APKAVIELENYGMPFSRTTD----GKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLH 199 (661)
Q Consensus 130 l~~~~-----~~~~~~~~-~~~~i~~l~~~Gv~f~~~~~----g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~ 199 (661)
.++++ +++.+++. +++.++||+++|++|....+ +.. ..+++. ...+| .+..+.+|..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~~------~~~~r-~~~~~~~G~~~~~ 152 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGHG------NSVPR-FHITWGTGPGVVE 152 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCcc------cccCc-eecCCCCcHHHHH
Confidence 77665 36777775 79999999999999965321 111 112111 11234 3344456778888
Q ss_pred HHHHHHH---hC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCC-------------CcEEEEEcCeEEEcCCcccccC--
Q psy15089 200 TLYGQSL---RY-DCNYFVEYFALDLIIENGECKGVIALCLED-------------GSIHRFNANNTVLATGGYGRAY-- 260 (661)
Q Consensus 200 ~L~~~a~---~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~-------------G~~~~i~Ak~VIlAtGg~~~~~-- 260 (661)
.|.+.++ +. ++++++++++++|+.++|+|+||++.+..+ ++.+.|+||+|||||||++.++
T Consensus 153 ~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em 232 (549)
T PRK12834 153 PFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHEL 232 (549)
T ss_pred HHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHH
Confidence 8887765 23 599999999999999999999999753221 2456789999999999999862
Q ss_pred ----CC-----------CCCCCCCCChHHHHHHHcCCccCCCcccccccccccCCCcee----cccccCCCcEEEcCCCC
Q psy15089 261 ----FS-----------CTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLI----TEGCRGEGGYLINSEGE 321 (661)
Q Consensus 261 ----~~-----------~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~~g~l~----~e~~~~~g~~lvn~~G~ 321 (661)
.+ ++++..+||||+.||+++||.+.+|+.++.+|.......... .....+.++++||.+|+
T Consensus 233 ~~~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vn~~Gk 312 (549)
T PRK12834 233 VRRNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWFDATGN 312 (549)
T ss_pred HHHhCccccCCCccccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCCCcCccccceeccCCCEEEECCCCC
Confidence 11 234445899999999999999999998766553322111000 00112346899999999
Q ss_pred cccccccccccccc--------c----hhHhhhhHHHHHH-hc--------------------CCCCC-------CCCc-
Q psy15089 322 RFMERYAPVAKDLA--------S----RDVVSRSMTIEIR-EG--------------------RGVGP-------DKDH- 360 (661)
Q Consensus 322 rf~~~~~p~~~~l~--------~----rd~~~~~i~~e~~-~g--------------------~g~~~-------~~~~- 360 (661)
||++|..+....+. + .-+....+..... .+ ....+ ..+.
T Consensus 313 RF~nE~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 392 (549)
T PRK12834 313 RLPAPLFPGFDTLGTLKHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGAPGPVEAFKDHGED 392 (549)
T ss_pred CCCCCccccccHHHHHHHHhccCCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCCCccHHHHHhcCCc
Confidence 99998532100000 0 0011111111000 00 00000 0000
Q ss_pred E-EEeC-------CC-------CChHHHHhHhhhHHHHHHHHcCCCC----------------------------CCCC-
Q psy15089 361 V-YLQL-------HH-------LPPEDLHQRLPGISETAMIFAGVDV----------------------------TREP- 396 (661)
Q Consensus 361 v-~~d~-------~~-------~~~~~l~~~~~~~~~~~~~~~gid~----------------------------~~~~- 396 (661)
+ ..|- -+ ++++.|++++..|+..+....+.|+ .+.|
T Consensus 393 ~~kAdTleELA~k~g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gPf 472 (549)
T PRK12834 393 FVVADDLEELVAGMNALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPHRLLDPAAGPL 472 (549)
T ss_pred EEEeCCHHHHHHHhcccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhcccCCccccCCCCCCE
Confidence 1 1120 12 6788888888888766543222332 2334
Q ss_pred --eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccc---cCCCCCCccchhhhhhHHHHHHHHHHHHHH
Q psy15089 397 --IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASC---SSVHGANRLGANSLLDLVVFGRACAKTIAE 470 (661)
Q Consensus 397 --i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~---~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~ 470 (661)
+++.|..+.|+||++||.++||++.| .++|||||||||+++ +++||.++++|+++++|++||++||++|++
T Consensus 473 YA~~~~~~~~~T~GGl~id~~~qVld~d---g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 473 IAVRLHILTRKTLGGLETDLDSRVLGAD---GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EEEEEeccccEEccCEeECCCCceeCCC---CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999988 689999999999974 478999999999999999999999999875
No 48
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-43 Score=394.22 Aligned_cols=412 Identities=24% Similarity=0.302 Sum_probs=287.2
Q ss_pred CcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhcc
Q psy15089 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGS 127 (661)
Q Consensus 53 ~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g 127 (661)
..++.++||||||+|+|||+||+.|+++|++|+||||....++++..++|++++..... ..++++.++.++.+.+
T Consensus 6 ~~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~ 85 (584)
T PRK12835 6 QNFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQIT 85 (584)
T ss_pred CCccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHh
Confidence 44667899999999999999999999999999999999888888888888887654332 2578888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC--CCcccCCCCc-ccccccC----Cccccc----------------------C
Q psy15089 128 DWLGDQDAIHYMTREAPKAVIELENYG--MPFSRTTDGK-IYQRAFG----GQSLKY----------------------G 178 (661)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~i~~l~~~G--v~f~~~~~g~-~~~~~~g----g~~~~~----------------------~ 178 (661)
.+.+++++++.+++++++.++||++.| +.|.....-. ++....+ +.++.. .
T Consensus 86 ~~~~d~~~v~~~~~~s~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 165 (584)
T PRK12835 86 GGLVSAARLRAYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAP 165 (584)
T ss_pred cccCCHHHHHHHHHHhHHHHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhccccccccc
Confidence 889999999999999999999999876 4443221100 0000000 000000 0
Q ss_pred CCC--------------------c-----cceee----e--ccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CC
Q psy15089 179 KGG--------------------Q-----AHRCC----A--VADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE-NG 226 (661)
Q Consensus 179 ~g~--------------------~-----~~r~~----~--~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g 226 (661)
.+. . ..|.. . .....|..++..|.+.+++.|++|++++.+++|+.+ +|
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g 245 (584)
T PRK12835 166 KGIWFTPKDLRLFYMVRQTWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKDAGVPLWLDSPMTELITDPDG 245 (584)
T ss_pred ccccccHHHHHHHHhhccCcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCC
Confidence 000 0 00000 0 001235677788888888899999999999999996 68
Q ss_pred EEEEEEEEEcCCCcEEEEEcC-eEEEcCCccccc------CCC-------CCCCCCCCChHHHHHHHcCCccCCCccccc
Q psy15089 227 ECKGVIALCLEDGSIHRFNAN-NTVLATGGYGRA------YFS-------CTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292 (661)
Q Consensus 227 ~v~Gv~~~~~~~G~~~~i~Ak-~VIlAtGg~~~~------~~~-------~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~ 292 (661)
+|+||++. .+|+.+.|+|+ +||||||||+.+ |.+ +.+++.++|||+.||+++||.+.+|+..++
T Consensus 246 ~V~Gv~~~--~~~~~~~i~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~~~~ 323 (584)
T PRK12835 246 AVVGAVVE--REGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDEAWW 323 (584)
T ss_pred cEEEEEEE--eCCcEEEEEeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCcccee
Confidence 99999885 46777789996 799999999963 322 345678999999999999999999987776
Q ss_pred ccccccCCCc---eecccccCCCcEEEcCCCCcccccccccccccc-------c---hhHhhhhHHHH-HHhcC---CCC
Q psy15089 293 HPTGIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLA-------S---RDVVSRSMTIE-IREGR---GVG 355 (661)
Q Consensus 293 ~p~~~~~~g~---l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~-------~---rd~~~~~i~~e-~~~g~---g~~ 355 (661)
+|....+.+. .+.+... .++++||.+|+||++|..+.. .+. + .+.....|+++ +.+.. +..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~-~~~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~ 401 (584)
T PRK12835 324 FPAICWPDGRMQFMLNERMM-PAQFIVNGAGKRFINEAAPYM-DFVHAMIAGQRSGVGHIPCWLVTDIRSFSRYVFGGHL 401 (584)
T ss_pred cceeecCCCceeeeeeccCC-CceEEECCCCCcCcCCcCchh-hHHHHHHhhccCCCCCcceEEEEChHHHhhcCccccc
Confidence 6654333221 1222222 367999999999999865431 100 0 00001111111 00000 000
Q ss_pred C-------------------CCCcEEE--e-------CCCCChHHHHhHhhhHHHHHHHHcCCCC--C------------
Q psy15089 356 P-------------------DKDHVYL--Q-------LHHLPPEDLHQRLPGISETAMIFAGVDV--T------------ 393 (661)
Q Consensus 356 ~-------------------~~~~v~~--d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~--~------------ 393 (661)
+ ...+..+ | .-+++++.|++++..|++.|. .|.|+ .
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~--~G~D~dFgr~~~~~~~~~~~ 479 (584)
T PRK12835 402 PIPKIPFAPVPTGRKFPQAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLAR--KGHDDDFNRGDSAYDNYYGD 479 (584)
T ss_pred CCCccccccccccccCcHHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhh--cCcCcccCCCCcchhcccCC
Confidence 0 0001111 1 125788889999999999886 34442 1
Q ss_pred ------------CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc-hhhhhhH
Q psy15089 394 ------------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG-ANSLLDL 457 (661)
Q Consensus 394 ------------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a 457 (661)
+.| +++.|..+.|+||++||+++||++.+ .++|||||||||++ ++++|.+|++ |++++.|
T Consensus 480 ~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~~---g~pIpGLYAAGe~~-Gg~~g~~Y~g~G~slg~a 555 (584)
T PRK12835 480 PTLPNPNLDPLGKPPYYAFRIELGDLGTSGGLRTDEHARVLRED---DSVIPGLYAVGNTS-ASVMGRSYAGAGATIGPA 555 (584)
T ss_pred CCCCCccccccccCCeEEEEecccccccCcCccCCCCceEECCC---CCCccceeeeeecc-cccccCCCCcCccchHHH
Confidence 122 56778899999999999999999987 68999999999986 6899999987 7899999
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy15089 458 VVFGRACAKTIAEENKP 474 (661)
Q Consensus 458 ~v~G~~Ag~~aa~~~~~ 474 (661)
++||++||++|++..+.
T Consensus 556 ~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 556 MTFGYVAARHAAAVVAA 572 (584)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999987643
No 49
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=100.00 E-value=3.9e-42 Score=375.99 Aligned_cols=379 Identities=18% Similarity=0.183 Sum_probs=266.9
Q ss_pred EECCcHHHHHHHHHhHHCCCcEEEEEecCC--CCCCcccccCceEEccC--C---CCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 63 VVGAGGAGLRAAFGLVAEGFKTAVITKLFP--TRSHTVAAQGGINAALG--N---MEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 63 VVGgG~AGl~AA~~aa~~G~~V~liek~~~--~~~~s~~a~Gg~~~~~~--~---~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
|||+|+||++||++|+++|++|+||||... .++++.. .+++..... . ...++.+.++.++.+.+.+.+++++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARH-GRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCccc-ccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999999999999864 2333332 222111100 0 1235566788888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEe
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~ 215 (661)
++.+++++.+.++||+++|++|....++.. ... .+.++ ....|..+++.|.+.+++.|++++++
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~--------~~~-------~~~~~-~~~~g~~l~~~L~~~a~~~Gv~i~~~ 143 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNL--------PYS-------RRTAF-LRGGGKALTNALYSSAERLGVEIRYG 143 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCc--------ccc-------Cceee-ecCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 999999999999999999999975433321 000 01111 12356789999999999999999999
Q ss_pred EEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccC------C-C------CCCCCCCCChHHHHHHHc
Q psy15089 216 YFALDLIIE--NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY------F-S------CTSAHTCTGDGTAMISRA 280 (661)
Q Consensus 216 ~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~------~-~------~~~~~~~tGdG~~~a~~a 280 (661)
+.|++|+.+ +++|+|+... .++ ..|.||.|||||||++.+. . + ..+.+.++|||+.||+++
T Consensus 144 ~~v~~l~~~~~~g~v~gv~~~--~~~--~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~ 219 (432)
T TIGR02485 144 IAVDRIPPEAFDGAHDGPLTT--VGT--HRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAE 219 (432)
T ss_pred CEEEEEEecCCCCeEEEEEEc--CCc--EEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHc
Confidence 999999987 5889998752 222 4689999999999998641 1 1 224567999999999999
Q ss_pred CCccCCCcccccccccccCC-----CceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhH-----------
Q psy15089 281 GLPNEDLEFVQFHPTGIYGA-----GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM----------- 344 (661)
Q Consensus 281 Ga~l~~~ef~q~~p~~~~~~-----g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i----------- 344 (661)
||.+.++. .+.|++...+. +.+........++++||.+|+||++|..+.. ...+......+
T Consensus 220 Ga~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vn~~G~RF~~E~~~~~--~~~~~~~~~~~~~~~~~~~~~i 296 (432)
T TIGR02485 220 GAQAIGDP-TDGHVVAVDARAPFHDGGIVTRIDGMQLGIVVGRDGRRFADEGAIRG--PERYAVWGRQLASRPGQRAYIL 296 (432)
T ss_pred CccccCCC-CcceeEeecCCCCcCCCceeeeecccccEEEECCCCCEeeecCCccc--cchHHHHHHHHHhCCCCeEEEE
Confidence 99987654 34454332111 1112222223568999999999999754320 00011111111
Q ss_pred HHH-HHhcCCCCCC-CCcEEEe-------CCCCChHHHHhHhhhHHHHHHHHcCCCC-CCCC---eeeeccccccccCcc
Q psy15089 345 TIE-IREGRGVGPD-KDHVYLQ-------LHHLPPEDLHQRLPGISETAMIFAGVDV-TREP---IPVLPTVHYNMGGIP 411 (661)
Q Consensus 345 ~~e-~~~g~g~~~~-~~~v~~d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~-~~~~---i~v~p~~~~~~GGi~ 411 (661)
+++ ..+. ..+. ...+..| .-+++++.|++++..|++.|. .+..| .+.| +++.|..|+|+||++
T Consensus 297 ~D~~~~~~--~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~--~g~~~i~~~PfYa~~~~p~~~~T~GGl~ 372 (432)
T TIGR02485 297 LDADAAKR--LPPMACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPR--TGARMILVVPFHAYPMIPGITFTRYGLV 372 (432)
T ss_pred ecchhhhh--cccccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHh--cCCCCCCCCCeEEEEeecccceeccceE
Confidence 100 0000 0000 0001111 125788889999999999886 34443 3444 899999999999999
Q ss_pred cCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhc
Q psy15089 412 TNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEEN 472 (661)
Q Consensus 412 vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~ 472 (661)
||.++||++.| ..+|||||||||++++++||.+|++|+++++|++||++||++|++..
T Consensus 373 id~~~~Vl~~~---g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 373 VDATARVRLND---AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ECCCceEECCC---CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 99999999987 68999999999987678999999999999999999999999998764
No 50
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=370.49 Aligned_cols=408 Identities=23% Similarity=0.260 Sum_probs=271.9
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSDWL 130 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~~l 130 (661)
+.++||||||+|++|++||+.|++.|++|+||||....++.+.++.|+++...... ..++.+..+.++.......
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 85 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGEN 85 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCCC
Confidence 34699999999999999999999999999999998777777777666665432211 1355555666666666778
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCcccCCCC-cccccccC----Ccccc-c-------C---------------C-C
Q psy15089 131 GDQDAIHYMTREAPKAVIELEN-YGMPFSRTTDG-KIYQRAFG----GQSLK-Y-------G---------------K-G 180 (661)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~~~~~g-~~~~~~~g----g~~~~-~-------~---------------~-g 180 (661)
+++++++.|++++++.++||++ .+++|.....- .++....+ +.++. . + . |
T Consensus 86 ~~~~~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g 165 (572)
T PRK12839 86 YDADKVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFLG 165 (572)
T ss_pred CCHHHHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCcccccccc
Confidence 9999999999999999999998 67776321100 00000000 00000 0 0 0 0
Q ss_pred Cc--------------------------cceee-----ec-c--CCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-C
Q psy15089 181 GQ--------------------------AHRCC-----AV-A--DRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE-N 225 (661)
Q Consensus 181 ~~--------------------------~~r~~-----~~-~--~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~ 225 (661)
.. ..|.. +. . ...|..++..|.+.+++.|++|+.++.+++|+.+ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~ 245 (572)
T PRK12839 166 MGIMAGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKN 245 (572)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC
Confidence 00 00000 00 0 0136778899999999999999999999999986 6
Q ss_pred CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc-------cCCC--------CCCCCCCCChHHHHHHHcCCccCCCc--
Q psy15089 226 GECKGVIALCLEDGSIHRFNANNTVLATGGYGR-------AYFS--------CTSAHTCTGDGTAMISRAGLPNEDLE-- 288 (661)
Q Consensus 226 g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~-------~~~~--------~~~~~~~tGdG~~~a~~aGa~l~~~e-- 288 (661)
|+|+||++.+ .+|+...+.+|.|||||||+++ .+.. +.+++.++|||+.||+++||.+.++.
T Consensus 246 g~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l~~~~~~ 324 (572)
T PRK12839 246 GRVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARLDRDLAS 324 (572)
T ss_pred CcEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCccccCCcc
Confidence 8999999865 5666555566999999999997 2322 22456899999999999999998743
Q ss_pred ccccccccccCC-----Cceeccccc-CCCcEEEcCCCCccccccccccccccc----hh-----HhhhhHHHH-HHhc-
Q psy15089 289 FVQFHPTGIYGA-----GCLITEGCR-GEGGYLINSEGERFMERYAPVAKDLAS----RD-----VVSRSMTIE-IREG- 351 (661)
Q Consensus 289 f~q~~p~~~~~~-----g~l~~e~~~-~~g~~lvn~~G~rf~~~~~p~~~~l~~----rd-----~~~~~i~~e-~~~g- 351 (661)
..+++|..+.+. +.+.....+ .++.++||.+|+||++|..+.. ++.. .+ .....|+++ +...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~VN~~GkRF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~ 403 (572)
T PRK12839 325 PAAWCPVSLVPYRNGKVGTFPHIMDRGKPGSIGVLATGKRFVNEANGYY-DYTLAMVKAAPEGEPVCSWLIADSRFVRKY 403 (572)
T ss_pred cccccceecccCCCCccccccccccccCCceEEECCCCCcCCCCCCccc-cHHHHHHHhccCCCCccEEEEeChHHHhhc
Confidence 334555433211 111000111 2578999999999999854321 1000 00 001111111 0000
Q ss_pred -CCC-CC--------CCCcEEEe---------CCCCChHHHHhHhhhHHHHHHHHcCCCCC-------------------
Q psy15089 352 -RGV-GP--------DKDHVYLQ---------LHHLPPEDLHQRLPGISETAMIFAGVDVT------------------- 393 (661)
Q Consensus 352 -~g~-~~--------~~~~v~~d---------~~~~~~~~l~~~~~~~~~~~~~~~gid~~------------------- 393 (661)
.+. .+ ...+.... .-+++++.|++++..|++.|. .|.|+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~--~G~D~dFgr~~~~~~~~~gd~~~~~ 481 (572)
T PRK12839 404 PLGMAKPLPVPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENAR--DGEDPEFGRGTTPFNRGSGDPDNGP 481 (572)
T ss_pred cccccCCCCCccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhh--cCCCcCcCCCcchhhcccCCcccCC
Confidence 000 00 00111111 125788999999999999876 344431
Q ss_pred --------CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCc-cchhhhhhHHHHH
Q psy15089 394 --------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANR-LGANSLLDLVVFG 461 (661)
Q Consensus 394 --------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanr-lgg~~l~~a~v~G 461 (661)
+.| +++.|..+.|+||++||.++||++.| .++||||||||+++ ++++|.+| ++|++++.|++||
T Consensus 482 ~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~d---g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~lg~a~~fG 557 (572)
T PRK12839 482 NPSLAPLEKGPFYAVKVVPGSFGTFAGLVADGKSRVLRDD---DTPIDGLYAAGNDQ-ASVMGGHYPSGGINLGPAMTFG 557 (572)
T ss_pred CcccccCCCCCeEEEEEeccccccCCCccCCCCceEECCC---CCCcCCceeccccc-cccccCCCCCcccchhHHHHHH
Confidence 122 57788999999999999999999988 68999999999986 67888766 6799999999999
Q ss_pred HHHHHHHHHh
Q psy15089 462 RACAKTIAEE 471 (661)
Q Consensus 462 ~~Ag~~aa~~ 471 (661)
++||++|++.
T Consensus 558 riAg~~aA~~ 567 (572)
T PRK12839 558 YIAGRELAGS 567 (572)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 51
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-40 Score=372.60 Aligned_cols=409 Identities=24% Similarity=0.325 Sum_probs=273.7
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccC
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSD 128 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~ 128 (661)
++..++||||||+|++|++||+.|+++|++|+||||....++++..+.|+++...... -.++.+....++.....
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVG 82 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 3456799999999999999999999999999999998777776766666654322110 12333444444444455
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcccCCC-Cccccccc----CCcccc---cCC---CC---------------
Q psy15089 129 WLGDQDAIHYMTREAPKAVIELENY-GMPFSRTTD-GKIYQRAF----GGQSLK---YGK---GG--------------- 181 (661)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~i~~l~~~-Gv~f~~~~~-g~~~~~~~----gg~~~~---~~~---g~--------------- 181 (661)
...+++.++.++++.++.++|+.+. ++.+..... +.++.... .+.++. +.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~ 162 (557)
T PRK07843 83 DVVPPERIDAYLDRGPEMLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLN 162 (557)
T ss_pred hhcCHHhhhhHHhcChHHHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhcccccccccc
Confidence 5678889999999999999998873 543321111 11100000 011100 000 00
Q ss_pred ---------------ccceee-----------------eccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEE
Q psy15089 182 ---------------QAHRCC-----------------AVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECK 229 (661)
Q Consensus 182 ---------------~~~r~~-----------------~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~ 229 (661)
..+|.+ ......+..+...|.+.+++.|+++++++.+++|+.++++|+
T Consensus 163 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~ 242 (557)
T PRK07843 163 MVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVT 242 (557)
T ss_pred ccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEE
Confidence 000000 000012456778888888889999999999999999889999
Q ss_pred EEEEEEcCCCcEEEEEcC-eEEEcCCcccc------cCC-------CCCCCCCCCChHHHHHHHcCCccCCCcccccccc
Q psy15089 230 GVIALCLEDGSIHRFNAN-NTVLATGGYGR------AYF-------SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295 (661)
Q Consensus 230 Gv~~~~~~~G~~~~i~Ak-~VIlAtGg~~~------~~~-------~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~ 295 (661)
||++. .+|+...|.|+ +|||||||+.. .|. .++++..++|||+.||+++||.+.+|++.|++|+
T Consensus 243 Gv~~~--~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~~~p~ 320 (557)
T PRK07843 243 GVHAA--ESGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAWWGPT 320 (557)
T ss_pred EEEEE--eCCcEEEEEeceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhccCCc
Confidence 99875 36777789995 79999999997 243 2345678999999999999999999999999987
Q ss_pred cccCCC--ceecccccCCCcEEEcCCCCccccccccccc---ccc-------ch---hHhhhhHHHH-HHhc---CCCCC
Q psy15089 296 GIYGAG--CLITEGCRGEGGYLINSEGERFMERYAPVAK---DLA-------SR---DVVSRSMTIE-IREG---RGVGP 356 (661)
Q Consensus 296 ~~~~~g--~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~---~l~-------~r---d~~~~~i~~e-~~~g---~g~~~ 356 (661)
.....+ .++.+.. .+++++||.+|+||++|..+... .+. .. +.....|+++ +.+. .++.+
T Consensus 321 ~~~~~~~~~~~~~~~-~~g~i~VN~~G~RF~nE~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~ 399 (557)
T PRK07843 321 IPLPGGPWFALSERN-LPGSIIVNMSGKRFMNESAPYVEAVHHMYGGEYGQGPGPGENIPAWLVFDQRYRDRYLFAGLQP 399 (557)
T ss_pred cccCCCcchhhhhhc-cCCeEEECCCCCcccCCCCcHHHHHHHHHhhccccccCCCCCceEEEEECchHHhhcCcCcCCC
Confidence 543222 2222211 25789999999999998654210 000 00 0001111111 1100 00000
Q ss_pred C--------CCcEEE--e-------CCCCChHHHHhHhhhHHHHHHHHcCCCCC--------------------------
Q psy15089 357 D--------KDHVYL--Q-------LHHLPPEDLHQRLPGISETAMIFAGVDVT-------------------------- 393 (661)
Q Consensus 357 ~--------~~~v~~--d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~~-------------------------- 393 (661)
. ..++.. | .-+++++.|++++..|++.|. .|.|+.
T Consensus 400 ~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~--~G~D~~Fgr~~~~~~~~~~~~~~~~~~~l~~i 477 (557)
T PRK07843 400 RQPIPSRWLESGVIVKADTLAELAAKIGVPADALTATVQRFNGFAR--SGVDEDFHRGESAYDRYYGDPTNKPNPNLGEL 477 (557)
T ss_pred CCCCcHHHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhh--cCCCcccCCCCcccccccCCCCCCCCcccccc
Confidence 0 001111 1 125788899999999999886 454431
Q ss_pred -CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc-hhhhhhHHHHHHHHHHHH
Q psy15089 394 -REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG-ANSLLDLVVFGRACAKTI 468 (661)
Q Consensus 394 -~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a~v~G~~Ag~~a 468 (661)
+.| +++.|..+.|+||++||.++||++.+ ..+|||||||||++ ++++|.+|++ |+++++|++||++||++|
T Consensus 478 ~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~---g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~~GriAg~~a 553 (557)
T PRK07843 478 SHAPFYAAKMVPGDLGTKGGLRTDVRGRVLRDD---GSVIEGLYAAGNVS-APVMGHTYAGPGATIGPAMTFGYLAALDI 553 (557)
T ss_pred cCCCeEEEEEecccceeCCCceECCCceEECCC---CCCcCCceeccccc-cccccCCcCccccchhhHHHHHHHHHHHH
Confidence 122 57788999999999999999999987 68999999999986 6899999997 889999999999999999
Q ss_pred HHh
Q psy15089 469 AEE 471 (661)
Q Consensus 469 a~~ 471 (661)
++.
T Consensus 554 a~~ 556 (557)
T PRK07843 554 AAQ 556 (557)
T ss_pred hhc
Confidence 753
No 52
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-40 Score=370.84 Aligned_cols=412 Identities=21% Similarity=0.256 Sum_probs=279.7
Q ss_pred CCcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhc
Q psy15089 52 YPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKG 126 (661)
Q Consensus 52 ~~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~ 126 (661)
++.++.++||||||+|++|++||+.|+++|++|+||||....++.+..+.|+++...... ..|+++..+.++...
T Consensus 10 ~~~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~ 89 (578)
T PRK12843 10 PERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDAL 89 (578)
T ss_pred CCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHh
Confidence 455677899999999999999999999999999999998877787777777776432211 256777766666665
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCcccC---CC-------Cc----ccc-----------------------c
Q psy15089 127 SDWLGDQDAIHYMTREAPKAVIELEN-YGMPFSRT---TD-------GK----IYQ-----------------------R 168 (661)
Q Consensus 127 g~~l~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~~~---~~-------g~----~~~-----------------------~ 168 (661)
.....|+++++.+++++++.++||++ .|++|... ++ +. ... .
T Consensus 90 ~~~~~d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (578)
T PRK12843 90 VGDRSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFT 169 (578)
T ss_pred hCCCCcHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhcccccccc
Confidence 55667999999999999999999996 79888432 11 00 000 0
Q ss_pred ccCCcccccCC-----C-Cccc-----------e-----ee-eccC--CcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEE
Q psy15089 169 AFGGQSLKYGK-----G-GQAH-----------R-----CC-AVAD--RTGHSLLHTLYGQSLRYDCNYFVEYFALDLII 223 (661)
Q Consensus 169 ~~gg~~~~~~~-----g-~~~~-----------r-----~~-~~~~--~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~ 223 (661)
.++|++..... + .+.+ | .. .... ..|..++..|.+.+++.|++++.++.+++|+.
T Consensus 170 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~ 249 (578)
T PRK12843 170 VLGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRARGVRILTQTDVESLET 249 (578)
T ss_pred ccccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEEEEe
Confidence 01111100000 0 0000 0 00 0000 13678999999999999999999999999998
Q ss_pred eCCEEEEEEEEEcCCCcEEEEEc-CeEEEcCCccccc------------CCCCCCCCCCCChHHHHHHHcCCccCCCcc-
Q psy15089 224 ENGECKGVIALCLEDGSIHRFNA-NNTVLATGGYGRA------------YFSCTSAHTCTGDGTAMISRAGLPNEDLEF- 289 (661)
Q Consensus 224 ~~g~v~Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~~------------~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef- 289 (661)
++++|+||.+. .+|+.+.|.| |.|||||||++.+ +..++++..++|||+.||+++||.+.++..
T Consensus 250 ~~g~V~GV~~~--~~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~~~~~ 327 (578)
T PRK12843 250 DHGRVIGATVV--QGGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGRGLLS 327 (578)
T ss_pred eCCEEEEEEEe--cCCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCccccCcc
Confidence 88999999875 4666677886 7999999999986 344567789999999999999999976532
Q ss_pred -cccccccccC--CC--ceeccc--ccC-CCcEEEcCCCCcccccccccc---cccc------c----hhHhhhhHHHHH
Q psy15089 290 -VQFHPTGIYG--AG--CLITEG--CRG-EGGYLINSEGERFMERYAPVA---KDLA------S----RDVVSRSMTIEI 348 (661)
Q Consensus 290 -~q~~p~~~~~--~g--~l~~e~--~~~-~g~~lvn~~G~rf~~~~~p~~---~~l~------~----rd~~~~~i~~e~ 348 (661)
..+.|....+ .+ ...... .++ .++++||.+|+||++|..+.. ..+. + .-+....+.+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~VN~~GkRF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~ 407 (578)
T PRK12843 328 NAFWAPVSVRRRADGSTAVFPHFYLDRGKPGTIAVNQQGRRFVNESTSYHLFGTAMFAAGKTSPGIPAYLITDAEFLRKY 407 (578)
T ss_pred cceecccccccCCCCccccccchhhhccCCCeEEECCCCCccccCCccHHHHHHHHHhhccCCCCccEEEEEChHHHhhc
Confidence 1123332211 01 000000 112 478999999999999754321 0000 0 001111111110
Q ss_pred HhcCCC-CC----C----CCcEEE--e-------CCCCChHHHHhHhhhHHHHHHHHcCCCCC-----------------
Q psy15089 349 REGRGV-GP----D----KDHVYL--Q-------LHHLPPEDLHQRLPGISETAMIFAGVDVT----------------- 393 (661)
Q Consensus 349 ~~g~g~-~~----~----~~~v~~--d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~~----------------- 393 (661)
+.+. .+ . ..+... | .-+++++.|++++..|++.|. .|.|+.
T Consensus 408 --~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~~~ 483 (578)
T PRK12843 408 --GLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYAR--TGIDPDFGRGATAYQRMNGDAMI 483 (578)
T ss_pred --CcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCcccCCCcchhhcccCCccc
Confidence 0000 00 0 011111 1 125788899999999999886 454431
Q ss_pred ----------CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc-hhhhhhHHH
Q psy15089 394 ----------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG-ANSLLDLVV 459 (661)
Q Consensus 394 ----------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a~v 459 (661)
+.| +++.|..+.|+||++||+++||++.| .++||||||||+++ +|++|.+|++ |++++.|++
T Consensus 484 ~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVld~d---g~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~ 559 (578)
T PRK12843 484 GPNPNLGPIETAPFYAVRLYPGDIGAATGLVTDASARVLNAD---GQPISGLYACGNDM-ASIMGGTYPGPGITLGPAIV 559 (578)
T ss_pred CCCCcccccCCCCeEEEEecCCccccCCCccCCCCceEECCC---CCCcCCceeccccc-cccccCCCCCcccchHHHHH
Confidence 122 57788999999999999999999987 68999999999986 6899999875 778999999
Q ss_pred HHHHHHHHHHHhcC
Q psy15089 460 FGRACAKTIAEENK 473 (661)
Q Consensus 460 ~G~~Ag~~aa~~~~ 473 (661)
||++||++|+++++
T Consensus 560 fGriAg~~aa~~~~ 573 (578)
T PRK12843 560 FAYLAARHAAKRTL 573 (578)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998764
No 53
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=7.6e-39 Score=360.58 Aligned_cols=409 Identities=21% Similarity=0.248 Sum_probs=270.8
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC-----CCCCCHHHHHHHHHhccCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN-----MEEDDWHWHMYDTVKGSDWL 130 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~-----~~~d~~~~~~~d~~~~g~~l 130 (661)
+.++||||||+|+||++||++|+++|++|+||||....++.+..+.|.+...... -..++++.+..++.+...+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 86 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGAF 86 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCCC
Confidence 3579999999999999999999999999999999987777776665544332111 02456666665556666678
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCcccCCCCcccccccCCc----cc---ccC--------------------CCCc
Q psy15089 131 GDQDAIHYMTREAPKAVIELEN-YGMPFSRTTDGKIYQRAFGGQ----SL---KYG--------------------KGGQ 182 (661)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~~~~~g~~~~~~~gg~----~~---~~~--------------------~g~~ 182 (661)
.++++++.+++++.+.++||++ .|+.|.......+.....++. +. .+. .|+.
T Consensus 87 ~~~~~~~~~~~~~~~~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 166 (574)
T PRK12842 87 FDAAAVEAFLDNGPEMVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGMM 166 (574)
T ss_pred CCHHHHHHHHhccHHHHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCccccccccee
Confidence 8999999999999999999986 688884321000000000000 00 000 0000
Q ss_pred c-------ceee----------------------------eccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCE
Q psy15089 183 A-------HRCC----------------------------AVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGE 227 (661)
Q Consensus 183 ~-------~r~~----------------------------~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~ 227 (661)
. .... ...-..|..++..|.+.+++.|++++.++.|++|+.++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~ 246 (574)
T PRK12842 167 FNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLTEGGR 246 (574)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCE
Confidence 0 0000 0000246778889999999999999999999999999999
Q ss_pred EEEEEEEEcCCCcEEEEEc-CeEEEcCCcccc-------cCCC--------CCCCCCCCChHHHHHHHcCCccCCCc--c
Q psy15089 228 CKGVIALCLEDGSIHRFNA-NNTVLATGGYGR-------AYFS--------CTSAHTCTGDGTAMISRAGLPNEDLE--F 289 (661)
Q Consensus 228 v~Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~-------~~~~--------~~~~~~~tGdG~~~a~~aGa~l~~~e--f 289 (661)
|+||++.+ .++ ...+.| ++|||||||++. .|.. ++++..++|||+.||+++||.+.++. .
T Consensus 247 V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~~~~~~ 324 (574)
T PRK12842 247 VVGARVID-AGG-ERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDIRFPDA 324 (574)
T ss_pred EEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCcccCCccc
Confidence 99998875 334 346777 589999999983 2321 34567899999999999999986431 1
Q ss_pred cccccccccC--CCce--e--cccccCCCcEEEcCCCCccccccccccccccc---------hhHhhhhHHHH-HHhcCC
Q psy15089 290 VQFHPTGIYG--AGCL--I--TEGCRGEGGYLINSEGERFMERYAPVAKDLAS---------RDVVSRSMTIE-IREGRG 353 (661)
Q Consensus 290 ~q~~p~~~~~--~g~l--~--~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~---------rd~~~~~i~~e-~~~g~g 353 (661)
..++|....+ .+.. . .......+.++||.+|+||++|..+.. .+.. .+.....|+++ ..+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~Vn~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~ 403 (574)
T PRK12842 325 AAWMPVSKVPLGGGRTGVFPHLLDRYKPGVIGVLRNGKRFTNESNSYH-DVGAAMIRACEGQKETAMWLICDRATLRKYG 403 (574)
T ss_pred ccccccccccCCCCccccccccccccCCceEEECCCCCCccCCCCcHh-HHHHHHHHhcccCCCccEEEEEcHHHHhhcC
Confidence 1122221100 0100 0 000112467999999999999865421 1000 00001112111 111000
Q ss_pred CC---C--------CCCcEEE--e-------CCCCChHHHHhHhhhHHHHHHHHcCCCCC--------------------
Q psy15089 354 VG---P--------DKDHVYL--Q-------LHHLPPEDLHQRLPGISETAMIFAGVDVT-------------------- 393 (661)
Q Consensus 354 ~~---~--------~~~~v~~--d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~~-------------------- 393 (661)
.. + ...++.+ | .-+++++.|++++..|++.|. .|.|+.
T Consensus 404 ~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~--~G~D~~Fgr~~~~~~~~~~~~~~~~~ 481 (574)
T PRK12842 404 LGYAKPAPMPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGAV--KGIDPAFGRGSTSFNRYLGDPDHKPN 481 (574)
T ss_pred cccCCCCCCChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCcccCCCcchhhhhcCCcccCCC
Confidence 00 0 0011111 1 125788999999999999876 344421
Q ss_pred -------CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccc-hhhhhhHHHHHH
Q psy15089 394 -------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG-ANSLLDLVVFGR 462 (661)
Q Consensus 394 -------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlg-g~~l~~a~v~G~ 462 (661)
+.| +++.|..+.|+||++||.++||++.| .++||||||||+++ +|++|.+|++ |++++.|++||+
T Consensus 482 ~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~---g~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~fGr 557 (574)
T PRK12842 482 PCVAPIGSGPFYAVKVIMGDLGTFDGLRTDVTGEVLDAD---GTPIAGLYAVGNDR-ASIMGGNYPGAGITLGPIMTFGY 557 (574)
T ss_pred cccccCCCCCEEEEEecccccccCCCcCCCCCceEECCC---CCCcCCceeccccc-ccCccCCCCCCcccHHHHHHHHH
Confidence 122 57788999999999999999999988 68999999999986 6899999987 899999999999
Q ss_pred HHHHHHHHhcC
Q psy15089 463 ACAKTIAEENK 473 (661)
Q Consensus 463 ~Ag~~aa~~~~ 473 (661)
+||++|++.++
T Consensus 558 iAg~~aa~~~~ 568 (574)
T PRK12842 558 ITGRHLAGVAG 568 (574)
T ss_pred HHHHHHHhhhc
Confidence 99999998764
No 54
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=7.4e-38 Score=352.40 Aligned_cols=411 Identities=23% Similarity=0.262 Sum_probs=272.7
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccC
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSD 128 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~ 128 (661)
.++.++||||||+|++|++||+.|+++|++|+||||....++.+..+.|.++...... ..++.+..+.++.....
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELG 87 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhC
Confidence 4566899999999999999999999999999999998766666666555554322111 13455555555555555
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-CCCCcccCC---CC--cccccccCCccccc---C--------------------C
Q psy15089 129 WLGDQDAIHYMTREAPKAVIELEN-YGMPFSRTT---DG--KIYQRAFGGQSLKY---G--------------------K 179 (661)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~~~~---~g--~~~~~~~gg~~~~~---~--------------------~ 179 (661)
...++++++.+++++.+.++||++ .|++|.... +- .......+|.+... . .
T Consensus 88 ~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (581)
T PRK06134 88 ARYDAARIDAFLEAGPHMVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFM 167 (581)
T ss_pred cCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhcccccccccc
Confidence 667999999999999999999987 588874211 00 00000111111100 0 0
Q ss_pred CCc-------------------c----c---ee-----ee---ccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC
Q psy15089 180 GGQ-------------------A----H---RC-----CA---VADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN 225 (661)
Q Consensus 180 g~~-------------------~----~---r~-----~~---~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~ 225 (661)
+.. + . |. .+ .....|..++..|.+.+++.|++++.++.|++|+.++
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~ 247 (581)
T PRK06134 168 GMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLRED 247 (581)
T ss_pred ccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC
Confidence 000 0 0 00 00 0012356788999999999999999999999999988
Q ss_pred CEEEEEEEEEcCCCcEEEEEc-CeEEEcCCccccc------CCC---------CCCCCCCCChHHHHHHHcCCccCC-C-
Q psy15089 226 GECKGVIALCLEDGSIHRFNA-NNTVLATGGYGRA------YFS---------CTSAHTCTGDGTAMISRAGLPNED-L- 287 (661)
Q Consensus 226 g~v~Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~~------~~~---------~~~~~~~tGdG~~~a~~aGa~l~~-~- 287 (661)
++|+||.+.+ +++.+.|+| |.|||||||++.+ |.+ +.+++.++|||+.|++++||.+.. +
T Consensus 248 g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~~~~~~ 325 (581)
T PRK06134 248 GRVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVVATDLA 325 (581)
T ss_pred CEEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCccCCCC
Confidence 9999998764 344567899 9999999999862 211 335678999999999999999863 3
Q ss_pred cccccccccccCC--Cc---eeccccc-CCCcEEEcCCCCccccccccccccccc---------hhHhhhhHHHH-HHhc
Q psy15089 288 EFVQFHPTGIYGA--GC---LITEGCR-GEGGYLINSEGERFMERYAPVAKDLAS---------RDVVSRSMTIE-IREG 351 (661)
Q Consensus 288 ef~q~~p~~~~~~--g~---l~~e~~~-~~g~~lvn~~G~rf~~~~~p~~~~l~~---------rd~~~~~i~~e-~~~g 351 (661)
.+.+++|+...+. +. ......+ ..|.++||.+|+||++|..+.. +... .......|+++ +...
T Consensus 326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~I~D~~~~~~ 404 (581)
T PRK06134 326 SPVAWAPVSLVPHADGSVGHFPHIIERGKPGLIGVLANGKRFVNEADSYH-DYVAAMFAATPPGQPVRSWLICDHRFLRR 404 (581)
T ss_pred cccccccccccCCCCCcccccccccccCCCCeEEECCCCCcccCCCcchh-hHHHHHHHhcCCCCCccEEEEECHHHHhh
Confidence 4577888654321 10 0000111 2568999999999999854321 0000 00001111111 1000
Q ss_pred CC------C-CCC----CCcEEE--e-------CCCCChHHHHhHhhhHHHHHHHHcCCCCC------------------
Q psy15089 352 RG------V-GPD----KDHVYL--Q-------LHHLPPEDLHQRLPGISETAMIFAGVDVT------------------ 393 (661)
Q Consensus 352 ~g------~-~~~----~~~v~~--d-------~~~~~~~~l~~~~~~~~~~~~~~~gid~~------------------ 393 (661)
.+ . .+. ..+..+ | .-+++++.|++++..|++.|. .|.|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~~~~ 482 (581)
T PRK06134 405 YGLGHIRPAPLPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHAR--NGQDPDFGRGSTPYNRKQGDPAHG 482 (581)
T ss_pred cCccccCCCCCChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCcccCCCCchhhcccCCcccC
Confidence 00 0 000 011111 1 125788899999999999886 454421
Q ss_pred ----------CCC---eeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCc-cchhhhhhHHH
Q psy15089 394 ----------REP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANR-LGANSLLDLVV 459 (661)
Q Consensus 394 ----------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanr-lgg~~l~~a~v 459 (661)
+.| +++.|..+.|+||++||.++||++.+ .++||||||||+++ +|++|.++ ++|+++++|++
T Consensus 483 ~~~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~~---g~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~ 558 (581)
T PRK06134 483 GPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQA---GQPIPGLYAAGNDM-ASVMGGFYPSGGITLGPALT 558 (581)
T ss_pred CCCcccCcCCCCCeEEEEeeccccccCCCccCCCCCceECCC---CCCcCcceeccccc-cccccCCcCCcchhHHHHHH
Confidence 122 56788999999999999999999987 68999999999986 56777655 57889999999
Q ss_pred HHHHHHHHHHHhcC
Q psy15089 460 FGRACAKTIAEENK 473 (661)
Q Consensus 460 ~G~~Ag~~aa~~~~ 473 (661)
||++||++|++...
T Consensus 559 fGriAg~~aa~~~~ 572 (581)
T PRK06134 559 FGYIAGRHIAGASG 572 (581)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999987653
No 55
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=100.00 E-value=8.6e-33 Score=248.18 Aligned_cols=129 Identities=41% Similarity=0.625 Sum_probs=112.8
Q ss_pred HHHHHHHhcccceeeeCHHHHHHHHHHHHHHHHHHhccccccCccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCCCc
Q psy15089 509 RLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGA 588 (661)
Q Consensus 509 ~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~~~~l~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 588 (661)
+++||++||+++||+|++++|++|+++|++|++++.++.+.+....+|+++..++|++||+++|++++.|||+|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 57899999999999999999999999999999999989988888889999999999999999999999999999999999
Q ss_pred cccccCCCCccccccCCCCCCCCCCCccccccceEEEEeeCCCCceEEEeecccccccCcccccccCCCCCCC
Q psy15089 589 HAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661 (661)
Q Consensus 589 H~R~D~P~~dd~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~r~y 661 (661)
|||.|||++||+ +|++|++++++. +++++++++||+++.+ ++||+.|+|
T Consensus 81 H~R~D~P~~~d~-----------------~~~~~~~~~~~~-~~~~~~~~~pv~~~~~------~~~p~~r~y 129 (129)
T PF02910_consen 81 HYREDYPERDDE-----------------NWLKHIIVRLDG-GGEMRISYEPVPFTDI------KIPPKERSY 129 (129)
T ss_dssp BEBTTSSSCETT-----------------TCSEEEEEEEET-TTEEEEEEEE--GSCS------SS-S---SS
T ss_pred chhccccccccc-----------------cccEEEEEEEcC-CCceEEEEecCCCccC------CCCCccCCC
Confidence 999999999998 999999999874 3469999999987654 589999999
No 56
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=240.27 Aligned_cols=358 Identities=18% Similarity=0.198 Sum_probs=213.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
..+||+|||||+|||+||+.|++.|.+|+|+|+++..+-.-..+.||-|...+. ..+..++... ..+...+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~---~~~~~~ls~~------p~~~~fl 72 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNS---EAPDEFLSRN------PGNGHFL 72 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccc---ccHHHHHHhC------CCcchHH
Confidence 358999999999999999999999999999999987766666666666544432 1233322221 1122333
Q ss_pred HHHHHH--HHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 137 HYMTRE--APKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 137 ~~~~~~--~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
+..... ..+.++|.+.+|+++.....|..+. ..+ ....|++.|..++++.||+++.
T Consensus 73 ~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp---------------------~sd-kA~~Iv~~ll~~~~~~gV~i~~ 130 (408)
T COG2081 73 KSALARFTPEDFIDWVEGLGIALKEEDLGRMFP---------------------DSD-KASPIVDALLKELEALGVTIRT 130 (408)
T ss_pred HHHHHhCCHHHHHHHHHhcCCeeEEccCceecC---------------------Ccc-chHHHHHHHHHHHHHcCcEEEe
Confidence 322222 2567889999999988776665432 112 2368999999999999999999
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccccc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p 294 (661)
++.|.++..++... .++..+|+ .|+|+.+||||||.+..- .+.||+|+..|...|..+....-..+.-
T Consensus 131 ~~~v~~v~~~~~~f----~l~t~~g~--~i~~d~lilAtGG~S~P~------lGstg~gy~iA~~~G~~I~~~rpalvpf 198 (408)
T COG2081 131 RSRVSSVEKDDSGF----RLDTSSGE--TVKCDSLILATGGKSWPK------LGSTGFGYPIARQFGHTITPLRPALVPF 198 (408)
T ss_pred cceEEeEEecCceE----EEEcCCCC--EEEccEEEEecCCcCCCC------CCCCchhhHHHHHcCCccccCccccCCc
Confidence 99999999887322 23347776 599999999999976322 2689999999999999887643211100
Q ss_pred ccccCC-CceecccccCCCcEEEcCCCCccccccccccccccchhH--hhhhHHHHHHhcCCCCCCCCcEEEeCC-CCCh
Q psy15089 295 TGIYGA-GCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDV--VSRSMTIEIREGRGVGPDKDHVYLQLH-HLPP 370 (661)
Q Consensus 295 ~~~~~~-g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~--~~~~i~~e~~~g~g~~~~~~~v~~d~~-~~~~ 370 (661)
+.-.+. ..+....+..--..+.+.+|..|-.+.-=...-+..-.+ .+..+. . .+..+ ...+.+|+. +.+.
T Consensus 199 t~~~~~~~~l~gls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~----~~~i~iDllP~~~~ 272 (408)
T COG2081 199 TLDESFLERLAGLSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKG----GATLSIDLLPDVDA 272 (408)
T ss_pred cCCHHHHHHhcCCcccceEEEEecCCCceeecceEEEecCCcHHHHHHHHHHHH-H-hccCC----CceEEEecCCCCCH
Confidence 000000 000001111111222333332332110000000110011 111111 1 22211 234677754 4455
Q ss_pred HHHHhHh-------------h-----hHHHHHHHHcCCCCCCC-----------------Ceeeec-------ccccccc
Q psy15089 371 EDLHQRL-------------P-----GISETAMIFAGVDVTRE-----------------PIPVLP-------TVHYNMG 408 (661)
Q Consensus 371 ~~l~~~~-------------~-----~~~~~~~~~~gid~~~~-----------------~i~v~p-------~~~~~~G 408 (661)
+.+.+.+ . .+.+......+| +.+. .+++.| .+..|.|
T Consensus 273 ~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~G 351 (408)
T COG2081 273 EELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAG 351 (408)
T ss_pred HHHHHHHHhhChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecC
Confidence 4433321 1 111111222444 2110 022222 3667899
Q ss_pred CcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhc
Q psy15089 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEEN 472 (661)
Q Consensus 409 Gi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~ 472 (661)
||.+++ ++..+++...+||||.|||+. .++| .+||..+.+|+++|+.||+.++++.
T Consensus 352 GV~~~e----id~kTmesk~vPGLyf~GEvl--Dv~g--~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 352 GVDTKE----IDSKTMESKKVPGLYFAGEVL--DVTG--WTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred ceehhh----cCHHHHHhhcCCCcEEEEEEE--Eecc--CCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 999876 444456778899999999986 6777 4899999999999999999998764
No 57
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.93 E-value=1.8e-25 Score=238.80 Aligned_cols=346 Identities=19% Similarity=0.293 Sum_probs=181.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccC-CCCCCCHHHHHHHHHhccCCCCCHHHHH
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALG-NMEEDDWHWHMYDTVKGSDWLGDQDAIH 137 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~-~~~~d~~~~~~~d~~~~g~~l~~~~~~~ 137 (661)
|||+|||||+|||+||+.|++.|++|+|+||+...+.....+.+|-|...+ ..+...+ .. .+..+++.++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~---~~------~~~~~~~f~~ 71 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEF---LS------GYGRNPKFLK 71 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGE---EC------S-TBTTTCTH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhH---hh------hcccchHHHH
Confidence 799999999999999999999999999999987655433334444443322 1111111 00 0011222222
Q ss_pred HHHH--HHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEe
Q psy15089 138 YMTR--EAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215 (661)
Q Consensus 138 ~~~~--~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~ 215 (661)
.... ...+.+.++.++|+++...++|+++.. .+ ....+++.|.+.+++.||+++++
T Consensus 72 ~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~---------------------s~-~a~~Vv~~L~~~l~~~gv~i~~~ 129 (409)
T PF03486_consen 72 SALKRFSPEDLIAFFEELGVPTKIEEDGRVFPK---------------------SD-KASSVVDALLEELKRLGVEIHFN 129 (409)
T ss_dssp HHHHHS-HHHHHHHHHHTT--EEE-STTEEEET---------------------T---HHHHHHHHHHHHHHHT-EEE-S
T ss_pred HHHhcCCHHHHHHHHHhcCCeEEEcCCCEECCC---------------------CC-cHHHHHHHHHHHHHHcCCEEEeC
Confidence 2111 225678899999999887766665421 11 23689999999999999999999
Q ss_pred EEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcc--cccc
Q psy15089 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEF--VQFH 293 (661)
Q Consensus 216 ~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef--~q~~ 293 (661)
+.|.++..+++.+.++.. .+++ .+.||.|||||||.+. +. .+.+|+|+.+|.+.|..+..+.- +++.
T Consensus 130 ~~V~~i~~~~~~~f~v~~---~~~~--~~~a~~vILAtGG~S~--p~----~GS~G~gy~~a~~lGh~i~~~~PaL~~l~ 198 (409)
T PF03486_consen 130 TRVKSIEKKEDGVFGVKT---KNGG--EYEADAVILATGGKSY--PK----TGSDGSGYRIAKKLGHTITPPYPALVPLK 198 (409)
T ss_dssp --EEEEEEETTEEEEEEE---TTTE--EEEESEEEE----SSS--GG----GT-SSHHHHHHHHTT--EEEEEEES--EE
T ss_pred CEeeeeeecCCceeEeec---cCcc--cccCCEEEEecCCCCc--cc----cCCCcHHHHHHHHCCCcEecCCCccCCee
Confidence 999999999888777664 2333 5899999999999762 22 26799999999999998765321 1110
Q ss_pred ---ccc--ccCCCceecccccCCCcE-EEcCCCCccccccccccc---cccchh--HhhhhHHHHHHhcCCCCCCCCcEE
Q psy15089 294 ---PTG--IYGAGCLITEGCRGEGGY-LINSEGERFMERYAPVAK---DLASRD--VVSRSMTIEIREGRGVGPDKDHVY 362 (661)
Q Consensus 294 ---p~~--~~~~g~l~~e~~~~~g~~-lvn~~G~rf~~~~~p~~~---~l~~rd--~~~~~i~~e~~~g~g~~~~~~~v~ 362 (661)
+.. -.-.|. +-.... ++ +|+....+..+... -+..-. -+++.+...+.+.. ...+.
T Consensus 199 ~~~~~~~~~~l~Gv------~~~~~~~~~--~~~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~~~-----~~~i~ 265 (409)
T PF03486_consen 199 CDEPWLFFKELSGV------RLKAVISLL--DGKKKASETGELLFTHYGISGPAILQLSRFIARALNKKK-----KVEIS 265 (409)
T ss_dssp --HHHHHTGGGTT-------EEEEEEEEE---ECTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH--T-----TEEEE
T ss_pred ecchhhhhhhhCCC------ceeeEEEEe--ccCCccceeeeEEEECCccchHHHHHHHHHHHHHHHhcC-----CceEE
Confidence 000 000111 101111 12 22221111111000 000000 12444444444332 22467
Q ss_pred EeCC-CCChHHHHhHhhh---------------------HHHHHHHHcCC-CCCCCC-------------------eeee
Q psy15089 363 LQLH-HLPPEDLHQRLPG---------------------ISETAMIFAGV-DVTREP-------------------IPVL 400 (661)
Q Consensus 363 ~d~~-~~~~~~l~~~~~~---------------------~~~~~~~~~gi-d~~~~~-------------------i~v~ 400 (661)
+|+- .++.+.+.+.+.. +........++ ++.+.. +++.
T Consensus 266 id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~ 345 (409)
T PF03486_consen 266 IDFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVT 345 (409)
T ss_dssp EESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEES
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeec
Confidence 7764 4555555443211 11222233566 543321 2222
Q ss_pred -----ccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHH
Q psy15089 401 -----PTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKT 467 (661)
Q Consensus 401 -----p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~ 467 (661)
..+..|.|||.+++ ++.++++...+||||+|||+. .++| .+||.+|.+||.+|++||++
T Consensus 346 g~~~~~~A~VT~GGV~~~e----id~~TmeSk~~~gLyf~GEvL--DvdG--~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 346 GTGGFDKAQVTAGGVDLKE----IDPKTMESKLVPGLYFAGEVL--DVDG--PCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp EE--TTT-SEEEEEE-GGG----B-TTT-BBSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH-
T ss_pred ccCCCceEEEECCCcCHHH----CCHhhhcccCCCCeEEEEEEE--Eecc--CcCchhHhHHHHHHHHhhCC
Confidence 13667899999876 445556678899999999986 6776 48899999999999999974
No 58
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=211.50 Aligned_cols=401 Identities=23% Similarity=0.266 Sum_probs=234.6
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEec--CCCCCCcccccCceEEccCCC-----CCCCHHHHHHHHHhccCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL--FPTRSHTVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSDW 129 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~--~~~~~~s~~a~Gg~~~~~~~~-----~~d~~~~~~~d~~~~g~~ 129 (661)
.++||+|||+|.|||.||.+++++|.+|+|+|.. ...++...|+.||...+-++. ..|+.+....|+.....+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F 83 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF 83 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence 3589999999999999999999999999999974 346777888888876554321 135555555666544332
Q ss_pred CC-----CHHHHHHHHHHH-HHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHH
Q psy15089 130 LG-----DQDAIHYMTREA-PKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYG 203 (661)
Q Consensus 130 l~-----~~~~~~~~~~~~-~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~ 203 (661)
-- ...+.+.|.+-+ .+.-.||.+.|+.+-..... .+-|-+...+.|..++|.+... .||..++..+.+
T Consensus 84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGW-----AERGG~~A~ghGNSVPRFHiTW-GTGPgvl~pFvr 157 (552)
T COG3573 84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGW-----AERGGSDAQGHGNSVPRFHITW-GTGPGVLEPFVR 157 (552)
T ss_pred CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccc-----hhhCCcccCCCCCCCcceEEee-cCCcchhhHHHH
Confidence 21 123444444433 34557888888765322110 0111112223344566665432 244455555444
Q ss_pred HHHh---CC-cEEEEeEEEEEEEEeCCEEEEEEEEEc-----C---------CCcEEEEEcCeEEEcCCccccc------
Q psy15089 204 QSLR---YD-CNYFVEYFALDLIIENGECKGVIALCL-----E---------DGSIHRFNANNTVLATGGYGRA------ 259 (661)
Q Consensus 204 ~a~~---~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~-----~---------~G~~~~i~Ak~VIlAtGg~~~~------ 259 (661)
++++ .| +++.+.++|..|...+++|+||...-+ . .|. .+|.|.+||+++||.+++
T Consensus 158 ~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~Gd-Fef~A~aviv~SGGIGGnhelVRr 236 (552)
T COG3573 158 RLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGD-FEFSASAVIVASGGIGGNHELVRR 236 (552)
T ss_pred HHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecc-eEEeeeeEEEecCCcCCCHHHHHh
Confidence 4433 34 899999999999999999999865311 1 122 478999999999999975
Q ss_pred -CCC-----------CCCCCCCCChHHHHHHHcCCccCCCcccccccccccC-------CCceecccccCCCcEEEcCCC
Q psy15089 260 -YFS-----------CTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYG-------AGCLITEGCRGEGGYLINSEG 320 (661)
Q Consensus 260 -~~~-----------~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~-------~g~l~~e~~~~~g~~lvn~~G 320 (661)
|.. +--|.-.+|-.+.++..+|+.++|.+-+.-+.-++.. .+.-| +.|+...|+|+.|
T Consensus 237 nWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNwdPiWp~HgIRI---lPGPSSlWlDa~G 313 (552)
T COG3573 237 NWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNWDPIWPNHGIRI---LPGPSSLWLDAAG 313 (552)
T ss_pred cCchhhcCCChHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccCCCcCcccceee---ccCCcceeECCCC
Confidence 220 1123456888899999999999998755433222211 12211 2456788999999
Q ss_pred Ccccccccccccccc------------chhHhhhhHH-HHH---------------------HhcCCCC-CC-------C
Q psy15089 321 ERFMERYAPVAKDLA------------SRDVVSRSMT-IEI---------------------REGRGVG-PD-------K 358 (661)
Q Consensus 321 ~rf~~~~~p~~~~l~------------~rd~~~~~i~-~e~---------------------~~g~g~~-~~-------~ 358 (661)
+|+---..|-...+. +.-++.+.|. +|. +.+.+.. |. .
T Consensus 314 ~RLp~P~~PGfdtlgTL~hi~~~G~~ysWFiLt~kiI~kEFaLSGsEQNPDLTGkd~rlll~Ra~k~pPgPV~AFmdrGe 393 (552)
T COG3573 314 KRLPVPLFPGFDTLGTLKHITSTGYDYSWFILTRKIIKKEFALSGSEQNPDLTGKDLRLLLRRAGKGPPGPVQAFMDRGE 393 (552)
T ss_pred CcCCCCcCCCcchhhHHHHHhhcCCCceeeeeeHHHHHHHhcccccccCCCccchhHHHHHHHhcCCCCccHHHHHhcCc
Confidence 985321111100000 0001111111 111 1111110 00 0
Q ss_pred CcEEEe-----------CC---CCChHHHHhHhhh----H-------H-----HHHHHHcC------------CCCCCCC
Q psy15089 359 DHVYLQ-----------LH---HLPPEDLHQRLPG----I-------S-----ETAMIFAG------------VDVTREP 396 (661)
Q Consensus 359 ~~v~~d-----------~~---~~~~~~l~~~~~~----~-------~-----~~~~~~~g------------id~~~~~ 396 (661)
|-|..| +. -++-+.++..+.. + . .-++.+.| .||...|
T Consensus 394 DFvv~~~L~eLVa~MN~l~g~~~Ld~a~v~r~i~aRDrev~N~~sKDaQitairgARaylgdrl~R~akph~llDPa~GP 473 (552)
T COG3573 394 DFVVADTLRELVAGMNELTGGEPLDYATVEREIEARDREVVNKYSKDAQITAIRGARAYLGDRLTRVAKPHRLLDPANGP 473 (552)
T ss_pred ceehhhhHHHHHHHhhccCCCCcccHHHHHHHHHhhhhhhhcccccchhhhhHHHHHHHhhhhhhhccCcccccCcccCc
Confidence 001000 00 0111111111100 0 0 00011111 2444444
Q ss_pred -e--eeeccccccccCcccCCCCeEEeecCCCCccccceeeecccc---ccCCCCCCccchhhhhhHHHHHHHHHHHHHH
Q psy15089 397 -I--PVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEAS---CSSVHGANRLGANSLLDLVVFGRACAKTIAE 470 (661)
Q Consensus 397 -i--~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a---~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~ 470 (661)
| .+.-...-+.||+.+|.+++|+..+ .+++|||||+||++ ++|+||.|-|-|.-|..|+.+|+.||+.++.
T Consensus 474 LIAVrLhiLTRKtLGGl~TdL~~rVl~A~---GqPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaaa~ 550 (552)
T COG3573 474 LIAVRLHILTRKTLGGLETDLDARVLGAD---GQPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGRAAAG 550 (552)
T ss_pred eEEEEEEeeeehhccCcccchhhhhhCCC---CCCCcchhhcchhcccCCCcccchhhhccceecceeecchhhhhhhcc
Confidence 2 2222344578999999999999887 79999999999998 4679999999999999999999999999875
No 59
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.90 E-value=8.1e-22 Score=212.86 Aligned_cols=347 Identities=20% Similarity=0.262 Sum_probs=203.8
Q ss_pred EEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHHHH
Q psy15089 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTR 141 (661)
Q Consensus 62 lVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~~~ 141 (661)
+|||||+||++||+.|++.|++|+|+||....++....+.+|.+..... .....+.... ..++..++....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~---~~~~~~~~~~------~~~~~~~~~~l~ 71 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNS---CPTPEFVAYY------PRNGKFLRSALS 71 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCC---CcchhHHHhc------CCCcHHHHHHHH
Confidence 6999999999999999999999999999876665554455555443321 1111111111 112333332222
Q ss_pred --HHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEE
Q psy15089 142 --EAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFAL 219 (661)
Q Consensus 142 --~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~ 219 (661)
...+.++|+.++|+++....+|..+. .......+.+.|.+.+++.|++++.++.|+
T Consensus 72 ~~~~~d~~~~~~~~Gv~~~~~~~g~~~p----------------------~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~ 129 (400)
T TIGR00275 72 RFSNKDLIDFFESLGLELKVEEDGRVFP----------------------CSDSAADVLDALLNELKELGVEILTNSKVK 129 (400)
T ss_pred hCCHHHHHHHHHHcCCeeEEecCCEeEC----------------------CCCCHHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 24677889999999887654443221 112346788999999999999999999999
Q ss_pred EEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCcccccccccccC
Q psy15089 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYG 299 (661)
Q Consensus 220 ~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~~p~~~~~ 299 (661)
++..+++. ..+.. +++ .+.|+.||+|||+++.. ..+++|+|+.++.++|+.+..+.- ...|.....
T Consensus 130 ~i~~~~~~-~~v~~----~~~--~i~ad~VIlAtG~~s~p------~~gs~G~g~~la~~lG~~i~~~~P-~l~~l~~~~ 195 (400)
T TIGR00275 130 SIKKDDNG-FGVET----SGG--EYEADKVILATGGLSYP------QLGSTGDGYEIAESLGHTIVPPVP-ALVPLTLDE 195 (400)
T ss_pred EEEecCCe-EEEEE----CCc--EEEcCEEEECCCCcccC------CCCCCcHHHHHHHHCCCCEecccc-eEeEEEeCC
Confidence 99765553 33332 233 48899999999998632 247899999999999998764321 111111111
Q ss_pred CCceecccccCCCcEEEcCCCCccccccccccc---cccchhH--hhhhHHHHHHhcCCCCCCCCcEEEeCC-CCChHHH
Q psy15089 300 AGCLITEGCRGEGGYLINSEGERFMERYAPVAK---DLASRDV--VSRSMTIEIREGRGVGPDKDHVYLQLH-HLPPEDL 373 (661)
Q Consensus 300 ~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~---~l~~rd~--~~~~i~~e~~~g~g~~~~~~~v~~d~~-~~~~~~l 373 (661)
+......+++-.+.+.+..+|++|.++..+... .+....+ +++.+...+..+.+ ..+.+|+- .++.+.+
T Consensus 196 ~~~~~l~Gv~~~~~~~~~~~~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~-----~~~~id~~p~~~~~~~ 270 (400)
T TIGR00275 196 SFLKELSGISLDGVVLSLVNGKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKG-----VELEIDLLPDLSEEEL 270 (400)
T ss_pred cccccCCCCcCccEEEEecCCcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCC-----cEEEEEcCCCCCHHHH
Confidence 100000112222223333456666654322110 0111111 12222222222221 23777765 3455544
Q ss_pred HhHhh---------------------hHHHHHHHHcCCCCCCC-------------------Ceeeec-----ccccccc
Q psy15089 374 HQRLP---------------------GISETAMIFAGVDVTRE-------------------PIPVLP-----TVHYNMG 408 (661)
Q Consensus 374 ~~~~~---------------------~~~~~~~~~~gid~~~~-------------------~i~v~p-----~~~~~~G 408 (661)
.+.+. .+........++++.+. ++++.. .+..|.|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~G 350 (400)
T TIGR00275 271 EQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAG 350 (400)
T ss_pred HHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecC
Confidence 33221 11112223357765432 122221 3667899
Q ss_pred CcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHH
Q psy15089 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAK 466 (661)
Q Consensus 409 Gi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~ 466 (661)
||.+++ ++..++...-+||||+|||+. .++| .+||.+|.+||.+|+.||+
T Consensus 351 Gv~~~e----i~~~~m~~k~~~gly~~GE~l--Dv~g--~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 351 GVSLKE----INPKTMESKLVPGLYFAGEVL--DVDG--DTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred cccchh----cChhhhhhcCCCCeEEEEEEE--ecCC--CCCchHHHHHHHHHHHhcC
Confidence 999876 344455667899999999986 6776 4899999999999999983
No 60
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.69 E-value=7e-17 Score=174.02 Aligned_cols=50 Identities=34% Similarity=0.472 Sum_probs=43.6
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEE 113 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~ 113 (661)
+.+||++|||+|+||..||++|++.|.+|+|||+.. ..||.|.+.++++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~--------~lGGtCln~GCIPs 51 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE--------RLGGTCLNVGCIPS 51 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC--------CcCceEEeeCcccc
Confidence 357999999999999999999999999999999973 26888988887653
No 61
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.68 E-value=1.5e-14 Score=152.34 Aligned_cols=326 Identities=16% Similarity=0.171 Sum_probs=178.9
Q ss_pred CCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHHHHH--HHHHHHHHHHCCCCcc
Q psy15089 81 GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTRE--APKAVIELENYGMPFS 158 (661)
Q Consensus 81 G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~~~~--~~~~i~~l~~~Gv~f~ 158 (661)
|.+|+|+||....+..-..+.||-|. +.+.... ..++. .+..+++.++..... ..+.++|+.++|+++.
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN-~TN~~~~--~~~~~------~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~ 71 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLN-LTHSEPL--PRFIE------RYGDAAEWLAPWLEAFDAVALQDWARGLGIETF 71 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcc-cCCCCch--HHHHH------hcCCchHHHHHHHHhCCHHHHHHHHHHCCCceE
Confidence 57899999987665554444555544 3332111 11111 122345555543333 3577899999999998
Q ss_pred cCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCC
Q psy15089 159 RTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLED 238 (661)
Q Consensus 159 ~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~ 238 (661)
..++|+++... .....+++.|...+++.||+++.++.|+++ +++. .++.. .+
T Consensus 72 ~e~~grvfP~S----------------------~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~---~~ 123 (376)
T TIGR03862 72 VGSSGRVFPVE----------------------MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFET---PD 123 (376)
T ss_pred ECCCCEECCCC----------------------CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEE---CC
Confidence 77777654311 123689999999999999999999999998 4443 23322 22
Q ss_pred CcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCc--ccccccccccCCCcee--cccccCCCcE
Q psy15089 239 GSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLE--FVQFHPTGIYGAGCLI--TEGCRGEGGY 314 (661)
Q Consensus 239 G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~e--f~q~~p~~~~~~g~l~--~e~~~~~g~~ 314 (661)
+. ..++|++||+||||.+ |+. .+.+|+|+.+|...|..+..+- .+++.- .....+. ..+++-....
T Consensus 124 ~~-~~~~a~~vIlAtGG~s--~p~----~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~---~~~~~~~~~L~Gv~~~~~~ 193 (376)
T TIGR03862 124 GQ-STIEADAVVLALGGAS--WSQ----LGSDGAWQQVLDQRGVSVAPFAPANCGFLV---DWSAHFASRFAGEPLKRVN 193 (376)
T ss_pred Cc-eEEecCEEEEcCCCcc--ccc----cCCCcHHHHHHHHCCCcccCCcCeeceEEc---cCchhhHhhcCCCcccceE
Confidence 32 2489999999999876 221 2679999999999999887642 111111 0000000 0011111111
Q ss_pred E-EcC---CCCccccccccccccccchhH--hhhhHHHHHHhcCCCCCCCCcEEEeCC-CCChHHHHhHhh------hHH
Q psy15089 315 L-INS---EGERFMERYAPVAKDLASRDV--VSRSMTIEIREGRGVGPDKDHVYLQLH-HLPPEDLHQRLP------GIS 381 (661)
Q Consensus 315 l-vn~---~G~rf~~~~~p~~~~l~~rd~--~~~~i~~e~~~g~g~~~~~~~v~~d~~-~~~~~~l~~~~~------~~~ 381 (661)
+ ++. .|+-....|. +..-.+ +++.+...+..+ ....+.+|+- .++.+.+.+.+. .+.
T Consensus 194 ~~~~~~~~~GellFTh~G-----iSGpavl~lS~~~~~~~~~~-----~~~~i~idf~P~~~~~~l~~~l~~~~~~k~l~ 263 (376)
T TIGR03862 194 ATAGTQQTRGEIVITARG-----LEGGLIYALSAALREQIKAG-----GSANLFLDLLPDLSLEQVTKRLAAPRGKQSLS 263 (376)
T ss_pred EEeCCeeEeeeEEEECCC-----ccHHHHHHHHHHHHHHHhcC-----CceEEEEECCCCCCHHHHHHHHHhhcccchHH
Confidence 1 110 0111111110 000001 122221111111 1122566653 344444433221 111
Q ss_pred HHHHHHcCCCC-------------------------CCCCeeeec-----cccccccCcccCCCCeEEeecCCCCccccc
Q psy15089 382 ETAMIFAGVDV-------------------------TREPIPVLP-----TVHYNMGGIPTNYKGQVLTHVNGQDKIIHG 431 (661)
Q Consensus 382 ~~~~~~~gid~-------------------------~~~~i~v~p-----~~~~~~GGi~vd~~~~vl~~d~~~~T~ipG 431 (661)
+......|+++ ..-++++.. .+..+.|||.+++ ++. +++..-+||
T Consensus 264 ~~L~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~E----I~~-~~~Sk~~pg 338 (376)
T TIGR03862 264 NHLRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDA----LDE-SLMLKARPG 338 (376)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHH----cCh-hhhcccCCC
Confidence 11111122220 001122221 3667899999876 332 244678999
Q ss_pred eeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhc
Q psy15089 432 LYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEEN 472 (661)
Q Consensus 432 LyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~ 472 (661)
||+|||+. .++| .+||.+|.+||.+|++||++|+.++
T Consensus 339 LYf~GEvL--DvdG--~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 339 VFCAGEML--DWEA--PTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred eEEEEEEE--eecc--CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999986 6777 4889999999999999999998875
No 62
>KOG2415|consensus
Probab=99.64 E-value=5.3e-16 Score=157.01 Aligned_cols=191 Identities=20% Similarity=0.244 Sum_probs=131.0
Q ss_pred cccccceeEeecCCCCCccCCccccCCCCcccccccEEEECCcHHHHHHHHHhHHC------CCcEEEEEecCCCCCCcc
Q psy15089 25 IIGVKQFHFTIHGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAE------GFKTAVITKLFPTRSHTV 98 (661)
Q Consensus 25 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVVGgG~AGl~AA~~aa~~------G~~V~liek~~~~~~~s~ 98 (661)
++...+.|+++.++..+.++.. ..+++...++||+|||||||||+|||+|.|. .++|+|+||+...++++.
T Consensus 46 ~~~~~tt~~~l~~~~~d~r~~~---v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 46 CRPRITTHYTLNPLTKDERWLD---VNMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred cccceeceeeecCCCcchhhhc---ccchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 3335567777777777666654 4456677889999999999999999999874 468999999988877766
Q ss_pred cccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCcc----cCCCCcccccccCCc
Q psy15089 99 AAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELEN-YGMPFS----RTTDGKIYQRAFGGQ 173 (661)
Q Consensus 99 ~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~~~~~~~~i~~l~~-~Gv~f~----~~~~g~~~~~~~gg~ 173 (661)
+|.+ +++..+++.+.|+.+.+..++.+-. .+.+..|.. +-+++. .+..|++.
T Consensus 123 --SGav------iep~aldEL~P~wke~~apl~t~vT--------~d~~~fLt~~~~i~vPv~~pm~NhGNYv------- 179 (621)
T KOG2415|consen 123 --SGAV------IEPGALDELLPDWKEDGAPLNTPVT--------SDKFKFLTGKGRISVPVPSPMDNHGNYV------- 179 (621)
T ss_pred --ccee------eccchhhhhCcchhhcCCccccccc--------ccceeeeccCceeecCCCcccccCCcEE-------
Confidence 2322 2566777777777766655543321 111222221 111111 11111111
Q ss_pred ccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEc---CCCcE-------E
Q psy15089 174 SLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCL---EDGSI-------H 242 (661)
Q Consensus 174 ~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~---~~G~~-------~ 242 (661)
- .-.+++++|.++|++.|++|+.+..+.+++++ +|.|.|+.+.|. ++|.. .
T Consensus 180 ----------v--------~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGm 241 (621)
T KOG2415|consen 180 ----------V--------SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGM 241 (621)
T ss_pred ----------E--------EHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccc
Confidence 0 12589999999999999999999999999995 689999988763 34432 3
Q ss_pred EEEcCeEEEcCCccccc
Q psy15089 243 RFNANNTVLATGGYGRA 259 (661)
Q Consensus 243 ~i~Ak~VIlAtGg~~~~ 259 (661)
.|+|+.+|+|.|-.|.+
T Consensus 242 e~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 242 EFHAKVTIFAEGCHGSL 258 (621)
T ss_pred eecceeEEEeccccchh
Confidence 69999999999977654
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.60 E-value=1.4e-14 Score=146.30 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=102.1
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.++||+|||||+||++||+.|++.|++|+|+||....+++.+ .||.. .+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~--~gg~~-------------------------~~~~~v 76 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW--GGGML-------------------------FNKIVV 76 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--cCccc-------------------------cccccc
Confidence 358999999999999999999999999999999765443221 12210 000000
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEY 216 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~ 216 (661)
..+.++++.++|++|....++.+ .. .+..+...|.+++.+.|++++.++
T Consensus 77 ------~~~~~~~l~~~gv~~~~~~~g~~-----------------------~v--d~~~l~~~L~~~A~~~Gv~I~~~t 125 (257)
T PRK04176 77 ------QEEADEILDEFGIRYKEVEDGLY-----------------------VA--DSVEAAAKLAAAAIDAGAKIFNGV 125 (257)
T ss_pred ------hHHHHHHHHHCCCCceeecCcce-----------------------ec--cHHHHHHHHHHHHHHcCCEEEcCc
Confidence 01345677889998865433211 01 236788999999999999999999
Q ss_pred EEEEEEEeCC-EEEEEEEEEc---C---CCcEEEEEcCeEEEcCCccc
Q psy15089 217 FALDLIIENG-ECKGVIALCL---E---DGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 217 ~v~~l~~~~g-~v~Gv~~~~~---~---~G~~~~i~Ak~VIlAtGg~~ 257 (661)
.|++++.+++ +|.|+++.+. . ..+...|+||.||+|||+.+
T Consensus 126 ~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 126 SVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 9999998665 8999987532 1 12346799999999999755
No 64
>KOG0405|consensus
Probab=99.58 E-value=7.2e-15 Score=145.92 Aligned_cols=147 Identities=20% Similarity=0.369 Sum_probs=93.0
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
..+||.+|||||.+|+++|.++++.|++|.|+|... ..||.|.+.++ -|+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f--------~lGGTCVn~GC---------------------VPKK 68 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF--------GLGGTCVNVGC---------------------VPKK 68 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC--------CcCceEEeecc---------------------ccce
Confidence 447999999999999999999999999999999763 46788887774 3445
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHH-hCCcEEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSL-RYDCNYFV 214 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~-~~gv~i~~ 214 (661)
+.+++......++....+|++.....+ + +| +........--.-++.+++... +.+|+++.
T Consensus 69 vm~~~a~~~~~~~da~~yG~~~~~~~~--f----------dW-------~~ik~krdayi~RLngIY~~~L~k~~V~~i~ 129 (478)
T KOG0405|consen 69 VMWYAADYSEEMEDAKDYGFPINEEGS--F----------DW-------KVIKQKRDAYILRLNGIYKRNLAKAAVKLIE 129 (478)
T ss_pred eEEehhhhhHHhhhhhhcCCccccccC--C----------cH-------HHHHhhhhHHHHHHHHHHHhhccccceeEEe
Confidence 555565566666777778887653321 1 11 1111100000112334454433 34677766
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+..- ..+++.|. ++..+|+...+.|+.+++||||..
T Consensus 130 G~a~---f~~~~~v~----V~~~d~~~~~Ytak~iLIAtGg~p 165 (478)
T KOG0405|consen 130 GRAR---FVSPGEVE----VEVNDGTKIVYTAKHILIATGGRP 165 (478)
T ss_pred eeEE---EcCCCceE----EEecCCeeEEEecceEEEEeCCcc
Confidence 5421 12344432 223567777799999999999865
No 65
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.57 E-value=4.3e-13 Score=145.18 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=89.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.+|||+|||+||||++||+.|+++|++|+|+||....+..... .+++. +...+....+ ...+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~~~~-------~~~l~~l~~~--------~~~~-i 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GGGLS-------PRALEELIPD--------FDEE-I 64 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cceec-------hhhHHHhCCC--------cchh-h
Confidence 4699999999999999999999999999999998776665443 11111 1111111000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEY 216 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~ 216 (661)
.. .. .+..+... ..........+ ..+..+ -..+.++|.+++++.|++++.++
T Consensus 65 ~~----------~v--~~~~~~~~-~~~~~~~~~~~-------------~~y~v~--R~~fd~~La~~A~~aGae~~~~~ 116 (396)
T COG0644 65 ER----------KV--TGARIYFP-GEKVAIEVPVG-------------EGYIVD--RAKFDKWLAERAEEAGAELYPGT 116 (396)
T ss_pred he----------ee--eeeEEEec-CCceEEecCCC-------------ceEEEE--hHHhhHHHHHHHHHcCCEEEece
Confidence 00 00 00000000 00000000000 000111 25788899999999999999999
Q ss_pred EEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 217 FALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 217 ~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
.++++..+++.+++.+. .++ .+++||.||.|+|..+
T Consensus 117 ~~~~~~~~~~~~~~~~~---~~~--~e~~a~~vI~AdG~~s 152 (396)
T COG0644 117 RVTGVIREDDGVVVGVR---AGD--DEVRAKVVIDADGVNS 152 (396)
T ss_pred EEEEEEEeCCcEEEEEE---cCC--EEEEcCEEEECCCcch
Confidence 99999998865544433 222 5799999999999544
No 66
>PLN02661 Putative thiazole synthesis
Probab=99.57 E-value=3.6e-14 Score=146.47 Aligned_cols=142 Identities=23% Similarity=0.320 Sum_probs=96.9
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC-CCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~-G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
.++||+|||+|+||++||+.|+++ |++|+||||....+++.+. ||.. .+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~--gg~l-------------------------~~~-- 141 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWL--GGQL-------------------------FSA-- 141 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceee--Cccc-------------------------ccc--
Confidence 468999999999999999999986 8999999997554432221 1110 000
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHh-CCcEEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLR-YDCNYFV 214 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~-~gv~i~~ 214 (661)
..++. ...++|+++|++|++. ++ +.. . .....++..|.+++.+ .|++++.
T Consensus 142 --~vv~~--~a~e~LeElGV~fd~~-dg-y~v------------------v-----~ha~e~~stLi~ka~~~~gVkI~~ 192 (357)
T PLN02661 142 --MVVRK--PAHLFLDELGVPYDEQ-EN-YVV------------------I-----KHAALFTSTIMSKLLARPNVKLFN 192 (357)
T ss_pred --ccccc--HHHHHHHHcCCCcccC-CC-eeE------------------e-----cchHHHHHHHHHHHHhcCCCEEEe
Confidence 00110 1235678899999654 22 110 0 0114566788877765 6899999
Q ss_pred eEEEEEEEEeCCEEEEEEEEE------cCC---CcEEEEEcCeEEEcCCcc
Q psy15089 215 EYFALDLIIENGECKGVIALC------LED---GSIHRFNANNTVLATGGY 256 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~------~~~---G~~~~i~Ak~VIlAtGg~ 256 (661)
++.+++|+.++++|.|+++.. ..+ .+...|+||+||+|||+.
T Consensus 193 ~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 193 AVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred CeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 999999999999999998631 112 234679999999999953
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.56 E-value=4.9e-14 Score=141.92 Aligned_cols=143 Identities=25% Similarity=0.345 Sum_probs=101.1
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.++||+|||||+||++||+.|+++|++|+||||....+++++ .||... . .. ...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~gg~~~--~------------~~------~~~---- 73 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GGGMLF--S------------KI------VVE---- 73 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CCCcce--e------------cc------ccc----
Confidence 369999999999999999999999999999999876554432 122110 0 00 000
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEY 216 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~ 216 (661)
....++++++|+++....++.+ .. ....+.+.|.+++.+.|++++.++
T Consensus 74 -------~~~~~~l~~~gi~~~~~~~g~~-----------------------~~--~~~el~~~L~~~a~e~GV~I~~~t 121 (254)
T TIGR00292 74 -------KPAHEILDEFGIRYEDEGDGYV-----------------------VA--DSAEFISTLASKALQAGAKIFNGT 121 (254)
T ss_pred -------chHHHHHHHCCCCeeeccCceE-----------------------Ee--eHHHHHHHHHHHHHHcCCEEECCc
Confidence 1233566778998865433211 01 125788999999999999999999
Q ss_pred EEEEEEEeCC--EEEEEEEEEc---CCC---cEEEEEcCeEEEcCCccc
Q psy15089 217 FALDLIIENG--ECKGVIALCL---EDG---SIHRFNANNTVLATGGYG 257 (661)
Q Consensus 217 ~v~~l~~~~g--~v~Gv~~~~~---~~G---~~~~i~Ak~VIlAtGg~~ 257 (661)
.+.+|+.+++ +|.|+++... ..| +...++||.||.|||..+
T Consensus 122 ~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 122 SVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 9999999776 7999887321 112 356799999999999644
No 68
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.55 E-value=2.9e-14 Score=156.67 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=39.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
++|||+|||||+||+.||+.|++.|.+|+|+||.. .||.|.+.++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~---------~GG~c~~~gci 46 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK---------LGGTCVNVGCV 46 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc---------cccceeccCcC
Confidence 35999999999999999999999999999999863 46666666544
No 69
>KOG4716|consensus
Probab=99.55 E-value=8.9e-14 Score=137.58 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=98.1
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
..+||.+|||||.+||+||-+|+..|.+|+++|--.+.--++.|-.||.|.+++++ |+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCI---------------------PKK 75 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCI---------------------PKK 75 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccc---------------------cHH
Confidence 35699999999999999999999999999999986555566777889999999854 444
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCC--cEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD--CNYF 213 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~g--v~i~ 213 (661)
+..-+.-..+.++...++|...+.. ++. ++| ..+.+...++....+ -++-
T Consensus 76 LMHQAallG~al~da~kyGW~~~e~---~ik--------hdW-----------------~~l~~sVqnhI~s~NW~yRv~ 127 (503)
T KOG4716|consen 76 LMHQAALLGEALHDARKYGWNVDEQ---KIK--------HDW-----------------NKLVKSVQNHIKSLNWGYRVQ 127 (503)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCccc---ccc--------ccH-----------------HHHHHHHHHHhhhccceEEEE
Confidence 4444555566777777888766432 110 001 345566666665554 2222
Q ss_pred EeEEEEEEEEeCCEEEEE---EEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 214 VEYFALDLIIENGECKGV---IALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 214 ~~~~v~~l~~~~g~v~Gv---~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
.+-.-+..+-.=+.+++- .+. ...|+...+.|..+|+|||+-.
T Consensus 128 LreKkV~Y~NsygeFv~~h~I~at-~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 128 LREKKVEYINSYGEFVDPHKIKAT-NKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred eccceeeeeecceeecccceEEEe-cCCCceEEeecceEEEEecCCC
Confidence 221122222111333332 122 2567777899999999999755
No 70
>PLN02546 glutathione reductase
Probab=99.54 E-value=7.3e-14 Score=155.96 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=87.5
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC-CCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP-TRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~-~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
..+|||+|||+|+||+.||+.|++.|++|+||||... ..+......||.|.+.+++ |.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCi---------------------Ps 135 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCV---------------------PK 135 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchH---------------------HH
Confidence 4569999999999999999999999999999997421 1122223468888887743 44
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
.....+......++....+|+.+..... + +| .......+..-..+...+.+.+++.||+++.
T Consensus 136 K~l~~aa~~~~~~~~~~~~g~~~~~~~~--~----------d~------~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~ 197 (558)
T PLN02546 136 KLLVYASKYSHEFEESRGFGWKYETEPK--H----------DW------NTLIANKNAELQRLTGIYKNILKNAGVTLIE 197 (558)
T ss_pred HHHHHHHHHHHHHHhhhhcCcccCCCCC--C----------CH------HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3333333344444555556765421100 0 00 0000001111123444555666777999876
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+. ++.+ +...+. + +|+ .+.+|.||||||+..
T Consensus 198 G~-a~~v--d~~~V~---v----~G~--~~~~D~LVIATGs~p 228 (558)
T PLN02546 198 GR-GKIV--DPHTVD---V----DGK--LYTARNILIAVGGRP 228 (558)
T ss_pred eE-EEEc--cCCEEE---E----CCE--EEECCEEEEeCCCCC
Confidence 53 2222 223321 1 354 489999999999754
No 71
>PTZ00058 glutathione reductase; Provisional
Probab=99.54 E-value=2.1e-14 Score=160.22 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=42.2
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEED 114 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d 114 (661)
..+|||+|||||+||+.||++|++.|.+|+||||.. .||.|.+.++.+..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~---------~GGtCln~GCiPsK 95 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY---------LGGTCVNVGCVPKK 95 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc---------ccccccccCCCCCc
Confidence 357999999999999999999999999999999862 56777777765433
No 72
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.53 E-value=3.9e-14 Score=155.77 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=38.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
+|||+||||||||++||+.|++.|.+|+|+||.. .||.|.+.++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~---------~GG~c~~~gci 46 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR---------VGGTCVIRGCV 46 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc---------cCceeecCCcC
Confidence 5999999999999999999999999999999852 46666665543
No 73
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.6e-13 Score=128.84 Aligned_cols=139 Identities=24% Similarity=0.355 Sum_probs=102.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHH
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIH 137 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~ 137 (661)
+.||+|||+||+||+||++|+++|+||+|+|+....+|+.+ .||+--. . -.++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w--~GGmlf~--~-----------------------iVv~ 82 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW--GGGMLFN--K-----------------------IVVR 82 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc--ccccccc--e-----------------------eeec
Confidence 57999999999999999999999999999999876666554 3333110 0 0000
Q ss_pred HHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEE
Q psy15089 138 YMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYF 217 (661)
Q Consensus 138 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~ 217 (661)
.+.-+.|.+.|+++....+|.+. . ....+...|..++.+.|++|+..+.
T Consensus 83 ------~~a~~iL~e~gI~ye~~e~g~~v-----------------------~--ds~e~~skl~~~a~~aGaki~n~~~ 131 (262)
T COG1635 83 ------EEADEILDEFGIRYEEEEDGYYV-----------------------A--DSAEFASKLAARALDAGAKIFNGVS 131 (262)
T ss_pred ------chHHHHHHHhCCcceecCCceEE-----------------------e--cHHHHHHHHHHHHHhcCceeeecce
Confidence 01124567789999877665331 1 1257788888899999999999999
Q ss_pred EEEEEEeCC-EEEEEEEEEc---CCC---cEEEEEcCeEEEcCC
Q psy15089 218 ALDLIIENG-ECKGVIALCL---EDG---SIHRFNANNTVLATG 254 (661)
Q Consensus 218 v~~l~~~~g-~v~Gv~~~~~---~~G---~~~~i~Ak~VIlAtG 254 (661)
+.|++..++ +|+|+++.-. ..+ .+..++|++||-|||
T Consensus 132 veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTG 175 (262)
T COG1635 132 VEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATG 175 (262)
T ss_pred EEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCC
Confidence 999999887 8999976311 111 245799999999999
No 74
>PLN02507 glutathione reductase
Probab=99.52 E-value=4.7e-13 Score=148.67 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=86.2
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC-CCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF-PTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~-~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
..+|||+|||||+||+.||++|++.|.+|+||||.. ...++.....||.|.+.++. |.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~Gci---------------------Ps 81 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCV---------------------PK 81 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCch---------------------hH
Confidence 456999999999999999999999999999999731 11122222368888776643 22
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
............+....++|+.+..... + ++ .......+..-..+...+.+.+...||+++.
T Consensus 82 K~l~~~a~~~~~~~~~~~~G~~~~~~~~--i----------d~------~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~ 143 (499)
T PLN02507 82 KILVYGATFGGEFEDAKNYGWEINEKVD--F----------NW------KKLLQKKTDEILRLNGIYKRLLANAGVKLYE 143 (499)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCc--c----------CH------HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 2222222223334445556765421110 0 00 0000000000011222233444567898877
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+ .+..+ +...+. +. ..+|+...+.+|.+|||||+..
T Consensus 144 g-~a~~v--d~~~v~---V~-~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 144 G-EGKIV--GPNEVE---VT-QLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred E-EEEEe--cCCEEE---EE-eCCCcEEEEEcCEEEEecCCCC
Confidence 6 33332 333322 22 2567666799999999999754
No 75
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.7e-13 Score=141.06 Aligned_cols=58 Identities=19% Similarity=0.333 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 193 TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.|..+++.+.++++..++++.. ..|.++...+..+ .+...+|+ ++||+||+|||....
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F----~v~t~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPF----KVKTDKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceE----EEEECCCe---EEEeEEEECcCCccc
Confidence 5678999999999999999777 5566655443321 12124454 899999999997553
No 76
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.51 E-value=9.3e-14 Score=153.58 Aligned_cols=46 Identities=33% Similarity=0.504 Sum_probs=38.2
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN 110 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~ 110 (661)
.+|||+|||||+||+.||.+|++.|++|+|||+... .||.|.+.++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~--------~GG~c~n~gc 48 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST--------LGGVCLNVGC 48 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc--------ccccccCCCc
Confidence 469999999999999999999999999999998632 4556655543
No 77
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.50 E-value=1.7e-13 Score=151.63 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=47.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEE 113 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~ 113 (661)
+|||||||+|+||+.||+.|++.|.+|+|||+..+..+++.+..||.|.+.++++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPs 57 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPK 57 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCch
Confidence 58999999999999999999999999999998655444544568999988887653
No 78
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.50 E-value=2.7e-13 Score=128.51 Aligned_cols=138 Identities=28% Similarity=0.369 Sum_probs=89.6
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCce--EEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGI--NAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~--~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.++||+|||+|||||+||+.|+++|+||+++|+....+++.+ .||+ +...- .+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~--~Gg~lf~~iVV--q~--------------------- 70 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW--GGGMLFNKIVV--QE--------------------- 70 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT--S-CTT---EEE--ET---------------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc--ccccccchhhh--hh---------------------
Confidence 469999999999999999999999999999999866655443 2221 11100 00
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
+....|++.|+++....+|.+. . ....+...|..++.+.|++++.
T Consensus 71 ----------~a~~iL~elgi~y~~~~~g~~v-----------------------~--d~~~~~s~L~s~a~~aGakifn 115 (230)
T PF01946_consen 71 ----------EADEILDELGIPYEEYGDGYYV-----------------------A--DSVEFTSTLASKAIDAGAKIFN 115 (230)
T ss_dssp ----------TTHHHHHHHT---EE-SSEEEE-----------------------S---HHHHHHHHHHHHHTTTEEEEE
T ss_pred ----------hHHHHHHhCCceeEEeCCeEEE-----------------------E--cHHHHHHHHHHHHhcCCCEEEe
Confidence 0113456679988765544321 1 2357788888888889999999
Q ss_pred eEEEEEEEEeC-CEEEEEEEEEc---CC---CcEEEEEcCeEEEcCC
Q psy15089 215 EYFALDLIIEN-GECKGVIALCL---ED---GSIHRFNANNTVLATG 254 (661)
Q Consensus 215 ~~~v~~l~~~~-g~v~Gv~~~~~---~~---G~~~~i~Ak~VIlAtG 254 (661)
.+.|.|++..+ ++|.|+++.-. .. =.+..|+||.||-|||
T Consensus 116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTG 162 (230)
T PF01946_consen 116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATG 162 (230)
T ss_dssp TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---
T ss_pred eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCC
Confidence 99999999987 89999987531 11 2356799999999999
No 79
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.48 E-value=7.3e-13 Score=146.34 Aligned_cols=47 Identities=30% Similarity=0.471 Sum_probs=39.4
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~ 112 (661)
+|||+|||+||||+.||+.|++.|++|+|||+.. ..||.|.+.++++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~--------~~GG~c~~~gciP 49 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS--------TLGGTCLNVGCMP 49 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC--------ceeeeeccCcccc
Confidence 4899999999999999999999999999999742 2467776666544
No 80
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.48 E-value=3e-13 Score=149.38 Aligned_cols=56 Identities=32% Similarity=0.427 Sum_probs=42.2
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC-CCcEEEEEecCCCCCCcccccCceEEccCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVITKLFPTRSHTVAAQGGINAALGNME 112 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~-G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~ 112 (661)
.+|||+|||||+||+.||++|++. |.+|+||||............||.|.+.++++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiP 58 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVP 58 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCcc
Confidence 469999999999999999999997 99999999842111000113688888887654
No 81
>KOG1335|consensus
Probab=99.47 E-value=1e-13 Score=139.61 Aligned_cols=145 Identities=21% Similarity=0.305 Sum_probs=89.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCH--HHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDW--HWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~--~~~~~d~~~~g~~l~~~~ 134 (661)
.+|||+|||+||+|..||++|+|.|+++++|||.. ..||.|.+.++.+...+ ..|++..+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~--------~LGGTcLnvGcIPSKALL~nSh~yh~~q~-------- 101 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG--------TLGGTCLNVGCIPSKALLNNSHLYHEAQH-------- 101 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC--------ccCceeeeccccccHHHhhhhHHHHHHhh--------
Confidence 47999999999999999999999999999999963 36788888887665433 2233222210
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~ 214 (661)
+.+++.|+...... +.. .......+..-.++...+...+++.+|+++.
T Consensus 102 -------------~~~~~rGi~vs~~~---~dl----------------~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~k 149 (506)
T KOG1335|consen 102 -------------EDFASRGIDVSSVS---LDL----------------QAMMKAKDNAVKQLTGGIENLFKKNKVTYVK 149 (506)
T ss_pred -------------hHHHhcCcccccee---cCH----------------HHHHHHHHHHHHHHhhHHHHHhhhcCeEEEe
Confidence 13455676553110 000 0000111112245555555566677788766
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
++-- +.+..+|. + ...+|+...|.||.+|+|||+-
T Consensus 150 G~gs---f~~p~~V~---v-~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 150 GFGS---FLDPNKVS---V-KKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred eeEe---ecCCceEE---E-eccCCCceEEeeeeEEEEeCCc
Confidence 5421 12333332 1 2267888899999999999973
No 82
>PRK06116 glutathione reductase; Validated
Probab=99.47 E-value=3.2e-13 Score=148.83 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=32.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.+|||+|||||+||++||+.|++.|++|+|||+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 83
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.47 E-value=3e-13 Score=150.29 Aligned_cols=55 Identities=31% Similarity=0.446 Sum_probs=43.5
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~ 112 (661)
.|||+|||||+||+.||+.|++.|++|+|||+.......+.+..||.|.+.++.+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciP 59 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVP 59 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccc
Confidence 5899999999999999999999999999999753322233234688887777543
No 84
>PRK06370 mercuric reductase; Validated
Probab=99.46 E-value=6.8e-13 Score=146.78 Aligned_cols=48 Identities=33% Similarity=0.495 Sum_probs=39.5
Q ss_pred ccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 55 ~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
++.+|||+|||||+||++||+.|++.|++|+|+||.. .||.|.+.++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~---------~GG~c~~~gci 49 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL---------LGGTCVNTGCV 49 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc---------cCCceeccccC
Confidence 3456999999999999999999999999999999863 35555555543
No 85
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.46 E-value=8.6e-12 Score=134.24 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
..+.+.|.+.+++.|++++.++.|+++..+++++.++.. .+|+...+.||.||+|||++
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~---~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT---RNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe---eCCceEEEECCEEEEeCCCc
Confidence 445667888888899999999999999988887766542 45666679999999999965
No 86
>PRK10015 oxidoreductase; Provisional
Probab=99.44 E-value=8.3e-12 Score=136.28 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.++|.+++++.|++++.++.|+++..+++++.++.. ++ ..+.|+.||+|+|..+.
T Consensus 108 ~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~----~~--~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 108 NRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA----GD--DILEANVVILADGVNSM 165 (429)
T ss_pred hHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe----CC--eEEECCEEEEccCcchh
Confidence 467788999999999999999999999888888776642 22 25899999999997553
No 87
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.43 E-value=2.5e-12 Score=144.46 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=112.5
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCH--HHH------HHHH----Hh
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDW--HWH------MYDT----VK 125 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~--~~~------~~d~----~~ 125 (661)
++||+|||||+.|+++|+.|++.|++|+||||.....+.|..+.|-+.....+...+.. ... +.+. ..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~~ 85 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVE 85 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhhc
Confidence 58999999999999999999999999999999876666666555544432222111111 000 0110 00
Q ss_pred c-cC-CCCCH-HHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccC--CcHHHHHHH
Q psy15089 126 G-SD-WLGDQ-DAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVAD--RTGHSLLHT 200 (661)
Q Consensus 126 ~-g~-~l~~~-~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~--~~g~~l~~~ 200 (661)
. +. ++..+ +.. ......++.+...|++....+.... ...++..... ........+ .....++..
T Consensus 86 ~~g~l~~~~~~~~~----~~~~~~~~~~~~~Gi~~~~l~~~e~-~~~eP~l~~~------~~ga~~~~dg~vdp~rl~~a 154 (546)
T PRK11101 86 PTDGLFITLPEDDL----AFQATFIRACEEAGIEAEAIDPQQA-LILEPAVNPA------LIGAVKVPDGTVDPFRLTAA 154 (546)
T ss_pred ccCCceEEeccccH----HHHHHHHHHHHHcCCCcEEECHHHH-HHhCCCcCcc------ceEEEEecCcEECHHHHHHH
Confidence 0 00 00000 000 0111233444566766432211110 1111111100 000111111 124678888
Q ss_pred HHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 201 LYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 201 L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+...+.++|+++++++.|+++..++++++|+.+.+..+|+...|+|+.||+|+|.++
T Consensus 155 l~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 155 NMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 888899999999999999999998899999998876677666799999999999775
No 88
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.42 E-value=5.4e-11 Score=131.31 Aligned_cols=151 Identities=26% Similarity=0.347 Sum_probs=86.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCC--CCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTR--SHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~--~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
|||+|||+|+||+.||..+++.|.+|+|||+..... ..+..+.||+.... +.+.+..-.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~-----------l~rEidaLG-------- 61 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI-----------LVKEIDALG-------- 61 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch-----------hhhhhhccc--------
Confidence 699999999999999999999999999999863211 11222334432110 000000000
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEEEe
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFVE 215 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~~~ 215 (661)
..........++.|...... .+. . ....| ... ....+...|.+.+++. +++++.
T Consensus 62 -------G~~~~~~d~~~i~~r~ln~s------kgp-A------V~~~R--aQV--Dr~~y~~~L~e~Le~~pgV~Ile- 116 (617)
T TIGR00136 62 -------GLMGKAADKAGLQFRVLNSS------KGP-A------VRATR--AQI--DKVLYRKAMRNALENQPNLSLFQ- 116 (617)
T ss_pred -------chHHHHHHhhceeheecccC------CCC-c------ccccH--HhC--CHHHHHHHHHHHHHcCCCcEEEE-
Confidence 00011112223333211000 000 0 00011 011 2246777787888777 677764
Q ss_pred EEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 216 YFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 216 ~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+++++.+ ++++.||.+ .+|. .|.|+.||+|||.|.+
T Consensus 117 ~~Vv~li~e~~g~V~GV~t---~~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 117 GEVEDLILEDNDEIKGVVT---QDGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred eEEEEEEEecCCcEEEEEE---CCCC--EEECCEEEEccCcccC
Confidence 578888876 788999876 4564 5999999999999854
No 89
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.41 E-value=5.4e-12 Score=139.69 Aligned_cols=47 Identities=32% Similarity=0.502 Sum_probs=39.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~ 112 (661)
.+|||+|||||+||++||+.|++.|.+|+|+||.. .||.|...++.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~---------~GG~c~~~gciP 49 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK---------LGGTCLNRGCIP 49 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc---------cccceeecccCC
Confidence 46999999999999999999999999999999863 356665555433
No 90
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.39 E-value=9.9e-12 Score=137.60 Aligned_cols=45 Identities=40% Similarity=0.654 Sum_probs=38.7
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
+|||+|||||+||++||+.|++.|++|+||||.. .||.|.+.++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~---------~GG~c~~~gci 48 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY---------WGGVCLNVGCI 48 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC---------CCCceecCCcc
Confidence 5999999999999999999999999999999863 46666666654
No 91
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.38 E-value=3.1e-11 Score=133.66 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=32.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
..|||+|||||+||+.||+.|++.|.+|+||||..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 45999999999999999999999999999999964
No 92
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.37 E-value=7.1e-12 Score=141.21 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=32.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
..|||+|||||+|||+||+.|++.|++|+|+|+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 35999999999999999999999999999999863
No 93
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.36 E-value=2.7e-12 Score=142.32 Aligned_cols=51 Identities=37% Similarity=0.525 Sum_probs=38.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALG 109 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~ 109 (661)
.+|||+|||||+||++||+.|++.|.+|+|||+....++. ...||.|.+.+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~--~~~Gg~c~n~g 53 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGK--PALGGTCLNVG 53 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCC--CCcCCcccccc
Confidence 4699999999999999999999999999999983111111 13466665544
No 94
>PRK14694 putative mercuric reductase; Provisional
Probab=99.35 E-value=1.7e-11 Score=135.78 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=38.4
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN 110 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~ 110 (661)
+..|||+|||||+||++||+.|++.|.+|+|||+.. .||.|.+.++
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~---------~GGtc~n~Gc 49 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT---------IGGTCVNIGC 49 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc---------cccceecCCc
Confidence 356999999999999999999999999999999863 3555555444
No 95
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.34 E-value=7.2e-12 Score=140.25 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=79.3
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
...+||+|||||+||++||+.|++.|++|+|+++. .||...... .+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~----------~GG~~~~~~-----~~------------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER----------FGGQVLDTM-----GI------------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC----------CCCeeeccC-----cc-------------------
Confidence 34689999999999999999999999999999763 233221000 00
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEe
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~ 215 (661)
+. -.+++ ...+..+.+.|.+++++.|++++.+
T Consensus 255 ------------~~--~~~~~----------------------------------~~~~~~l~~~l~~~~~~~gv~i~~~ 286 (517)
T PRK15317 255 ------------EN--FISVP----------------------------------ETEGPKLAAALEEHVKEYDVDIMNL 286 (517)
T ss_pred ------------cc--cCCCC----------------------------------CCCHHHHHHHHHHHHHHCCCEEEcC
Confidence 00 00110 1134678888999999999999999
Q ss_pred EEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 216 ~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+.|+++..+++... +. ..+|+ .+.|+.||+|||+..
T Consensus 287 ~~V~~I~~~~~~~~-V~---~~~g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 287 QRASKLEPAAGLIE-VE---LANGA--VLKAKTVILATGARW 322 (517)
T ss_pred CEEEEEEecCCeEE-EE---ECCCC--EEEcCEEEECCCCCc
Confidence 99999877654321 22 24554 489999999999854
No 96
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.33 E-value=1.7e-12 Score=145.09 Aligned_cols=114 Identities=28% Similarity=0.348 Sum_probs=77.7
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
...+||+|||||+||++||+.|++.|++|+|++.. .||..... ..+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~----------~GG~~~~~-----~~~------------------- 255 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER----------IGGQVKDT-----VGI------------------- 255 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC----------CCCccccC-----cCc-------------------
Confidence 34699999999999999999999999999999753 12221000 000
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEe
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~ 215 (661)
+.+ .+.+ ...+..+...+.+++++.|++++.+
T Consensus 256 ------------~~~--~~~~----------------------------------~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 256 ------------ENL--ISVP----------------------------------YTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred ------------ccc--cccC----------------------------------CCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 000 0000 0134567788888888889999999
Q ss_pred EEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 216 ~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+.|+++..+++.. .+. ..+|+ .+.++.+|+|||...
T Consensus 288 ~~V~~I~~~~~~~-~v~---~~~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 288 QRAKKIETEDGLI-VVT---LESGE--VLKAKSVIVATGARW 323 (515)
T ss_pred CEEEEEEecCCeE-EEE---ECCCC--EEEeCEEEECCCCCc
Confidence 9999987765432 122 24565 489999999999753
No 97
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.32 E-value=4.1e-12 Score=140.55 Aligned_cols=34 Identities=41% Similarity=0.512 Sum_probs=32.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.+|||+|||||+||++||+.|++.|.+|+||||.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3599999999999999999999999999999984
No 98
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.32 E-value=1.7e-11 Score=135.48 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=81.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYM 139 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~ 139 (661)
||+|||+|+||+.||+.|++.|.+|+|+||.. .||.|.+.++.+... ...
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~---------~gG~c~~~gciPsK~---------------------l~~ 52 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG---------LGGAAVLTDCVPSKT---------------------LIA 52 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC---------CCCcccccCCcchHH---------------------HHH
Confidence 89999999999999999999999999999863 366666655433221 111
Q ss_pred HHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEE
Q psy15089 140 TREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFAL 219 (661)
Q Consensus 140 ~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~ 219 (661)
..+....++...++|+.........+ ++ .......+..-..+...+.+++++.||+++.+.. .
T Consensus 53 ~a~~~~~~~~~~~~g~~~~~~~~~~~----------~~------~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~ 115 (466)
T PRK07845 53 TAEVRTELRRAAELGIRFIDDGEARV----------DL------PAVNARVKALAAAQSADIRARLEREGVRVIAGRG-R 115 (466)
T ss_pred HHHHHHHHHHHHhCCcccccCccccc----------CH------HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-E
Confidence 11122233444556665320000000 00 0000000000012233455666778999988753 2
Q ss_pred EEE--EeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 220 DLI--IENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 220 ~l~--~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+. .+...+. +. ..+|+...+.+|.||||||+...
T Consensus 116 ~~~~~~~~~~v~---V~-~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 116 LIDPGLGPHRVK---VT-TADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred EeecccCCCEEE---EE-eCCCceEEEecCEEEEcCCCCCC
Confidence 222 3334332 22 24565456899999999998653
No 99
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.31 E-value=7.4e-12 Score=141.73 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=41.5
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~ 112 (661)
+.+|||+|||+|+||..||++|++.|++|+|||+... ..||.|.+.++++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~-------~lGGtCvn~GCiP 163 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDD-------SIGGTCVNVGCIP 163 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-------ccccceeEeCCcc
Confidence 3479999999999999999999999999999996421 2577887777654
No 100
>PRK14727 putative mercuric reductase; Provisional
Probab=99.31 E-value=3e-11 Score=133.99 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=40.6
Q ss_pred CcccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 53 ~~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
......+||+|||+|+||+.||+.|++.|.+|+|||+... .||.|.+.++.
T Consensus 11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~--------~GG~c~n~Gci 61 (479)
T PRK14727 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV--------IGGCCVNVGCV 61 (479)
T ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc--------ceeEecccccc
Confidence 3334569999999999999999999999999999998632 35666555543
No 101
>PRK07846 mycothione reductase; Reviewed
Probab=99.30 E-value=5e-11 Score=131.12 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=35.5
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
+|||+|||||+||..||+++ .|.+|+||||.. .||.|.+.++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~---------~GGtC~n~GCi 43 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT---------FGGTCLNVGCI 43 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC---------CCCcccCcCcc
Confidence 38999999999999999874 599999999863 56777777654
No 102
>KOG0404|consensus
Probab=99.30 E-value=4.3e-12 Score=118.99 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=46.4
Q ss_pred eeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 399 VLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 399 v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
-.|...+.-|.+..|.+|.++.......|+|||+||+||+- - + --|. +++ +.-+|.+||..|-+|+.
T Consensus 253 H~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVq-D--~-kyRQ---AvT-aAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 253 HSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQ-D--K-KYRQ---AVT-AAGSGCIAALDAERYLT 319 (322)
T ss_pred CCchhhHhcCceeeccCceEEeccCcccccccceeeccccc-h--H-HHHH---HHh-hhccchhhhhhHHHHhh
Confidence 34566677789999999998776445579999999999974 2 1 1121 121 23468888888887764
No 103
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.30 E-value=1.5e-10 Score=125.44 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEE--eCCEEEEEEEEEcC----CCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLII--ENGECKGVIALCLE----DGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~--~~g~v~Gv~~~~~~----~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+++.+.|++++..+ ++++.. +.+...++.+.... +|+...|+|+.||.|+|..+.
T Consensus 93 ~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 93 EVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred HHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 5677889999999999997775 777653 23444455543211 255567999999999997653
No 104
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.30 E-value=1.8e-10 Score=119.79 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccC
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY 260 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~ 260 (661)
-..+++.+.+..+++|++++++++|.+++.+++.+.++.. .+|+ .|.|+.||+|.|-.++.|
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~---~~g~--~i~~~~vvlA~Grsg~dw 233 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKL---TKGE--EIEADYVVLAPGRSGRDW 233 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEc---cCCc--EEecCEEEEccCcchHHH
Confidence 3678899999999999999999999999999887777764 5565 399999999999776654
No 105
>PRK13748 putative mercuric reductase; Provisional
Probab=99.29 E-value=1e-10 Score=132.82 Aligned_cols=46 Identities=28% Similarity=0.518 Sum_probs=38.7
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
.+|||+|||||+||+.||+.|++.|.+|+|||+.. .||.|.+.++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~---------~GG~c~n~gci 142 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT---------IGGTCVNVGCV 142 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc---------ceeeccccCcc
Confidence 36999999999999999999999999999999862 45666555543
No 106
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.29 E-value=1e-11 Score=137.37 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=31.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
|||+|||||+||++||+.|++.|.+|+||||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999863
No 107
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.29 E-value=8.4e-11 Score=130.23 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=31.4
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
+|||+|||||+||+.||++|++.|.+|+||||.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 389999999999999999999999999999994
No 108
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.28 E-value=7.5e-11 Score=125.59 Aligned_cols=181 Identities=18% Similarity=0.269 Sum_probs=102.2
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCC-CHHH-------HHHHHHhccC--C
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEED-DWHW-------HMYDTVKGSD--W 129 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d-~~~~-------~~~d~~~~g~--~ 129 (661)
||+|||||++|+++|++|++.|.+|+|||+.....+.|..+ +|+.........+ .... .+.++..... .
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRS-GGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSS-SEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccc-cccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence 89999999999999999999999999999995555445444 4544332100111 1000 1111111100 0
Q ss_pred ---------C-CCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccC---CcHHH
Q psy15089 130 ---------L-GDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVAD---RTGHS 196 (661)
Q Consensus 130 ---------l-~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~---~~g~~ 196 (661)
+ .++.... ......+.+...|+++.......+ ...++.... ......+..+ -....
T Consensus 80 ~~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~------~~~~~~~~~~~g~i~~~~ 148 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAE----SLERLLDRLRRNGIPYELLSPEEL-RELFPFLNP------RIEGGVFFPEGGVIDPRR 148 (358)
T ss_dssp EEEECEEEEEESSHHHHH----HHHHHHHHHHHTTTTEEEEEHHHH-HHHSTTSST------TTEEEEEETTEEEEEHHH
T ss_pred ccccccccccccchhhhh----hccccccccccccccccccchhhh-hhhhccccc------chhhhhcccccccccccc
Confidence 0 1222222 123344455556664322111110 001110000 0000011111 12478
Q ss_pred HHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 197 LLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 197 l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
+++.|.+.+++.|++++.+++|++|..+++++.||.+ .+|+ ++|+.||+|+|.++.
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~---~~g~---i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRT---SDGE---IRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEE---TTEE---EEECEEEE--GGGHH
T ss_pred hhhhhHHHHHHhhhhccccccccchhhcccccccccc---cccc---cccceeEecccccce
Confidence 9999999999999999999999999999999988875 5553 899999999997653
No 109
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.27 E-value=4.4e-11 Score=132.06 Aligned_cols=44 Identities=32% Similarity=0.396 Sum_probs=37.2
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~ 112 (661)
+|+|||||+||++||++|++.|.+|+||||.. .||.|.+.++.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~---------~GG~c~n~gciP 45 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD---------LGGTCLNEGCMP 45 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc---------ccccCCCCcccc
Confidence 79999999999999999999999999999863 456666665544
No 110
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.27 E-value=1.4e-10 Score=129.27 Aligned_cols=64 Identities=16% Similarity=0.030 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...++..+...+.+.|++++.++.|+++..+++. .++.+.+..+|+...|+|+.||+|+|.++.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 3567778888899999999999999999877664 467766655677678999999999998763
No 111
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.26 E-value=6.6e-11 Score=134.62 Aligned_cols=65 Identities=17% Similarity=0.044 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIE--NGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...++..|.+.+++.|++++.++.|+++..+ ++++.|+.+.|..+|+.+.|.||.||+|+|.++.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 4688889999999999999999999999887 5789999988766777667999999999998764
No 112
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.26 E-value=1.1e-10 Score=129.06 Aligned_cols=153 Identities=27% Similarity=0.397 Sum_probs=88.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC-CCCC-CcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF-PTRS-HTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~-~~~~-~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.+|||||||||+||+.||+.|++.|++|+|||+.. ..+. .+..+.||+. ..++.+.+..-.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~a-----------kg~lvrEidalG------ 65 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIA-----------KGHLVREIDALG------ 65 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccch-----------hhHHHHHHHhcC------
Confidence 46999999999999999999999999999999863 1111 0111122211 001111111000
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEE
Q psy15089 135 AIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYF 213 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~ 213 (661)
..........++.|...... .|... ...|. .. ....+...|.+.+++. |++++
T Consensus 66 ---------g~~g~~~d~~giq~r~ln~s-------kGpAV------~s~Ra--Qi--Dr~ly~kaL~e~L~~~~nV~I~ 119 (618)
T PRK05192 66 ---------GEMGKAIDKTGIQFRMLNTS-------KGPAV------RALRA--QA--DRKLYRAAMREILENQPNLDLF 119 (618)
T ss_pred ---------CHHHHHHhhccCceeecccC-------CCCce------eCcHH--hc--CHHHHHHHHHHHHHcCCCcEEE
Confidence 01112223344444321110 00000 00110 11 1245667777777765 78875
Q ss_pred EeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 214 VEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 214 ~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
+..|++++.++++|.||.+ .+|. .|.|+.||+|||.+.+
T Consensus 120 -q~~V~~Li~e~grV~GV~t---~dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 120 -QGEVEDLIVENGRVVGVVT---QDGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred -EeEEEEEEecCCEEEEEEE---CCCC--EEECCEEEEeeCcchh
Confidence 5679999999999999886 4564 5999999999998764
No 113
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.23 E-value=7.6e-12 Score=136.59 Aligned_cols=147 Identities=25% Similarity=0.257 Sum_probs=35.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYM 139 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~ 139 (661)
||||||||+||++||+.|+++|++|+||||....++... .|+.....+. .... ..+.-+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t--~~~~~~~~~~---~~~~----------------~~~~gi 59 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT--SGGVSPFDGN---HDED----------------QVIGGI 59 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG--GSSS-EETTE---EHHH----------------HHHHHH
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce--ECCcCChhhc---chhh----------------ccCCCH
Confidence 899999999999999999999999999999876655332 3333322211 0000 000011
Q ss_pred HHHHHHHHHHHHHCCC-CcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEE
Q psy15089 140 TREAPKAVIELENYGM-PFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFA 218 (661)
Q Consensus 140 ~~~~~~~i~~l~~~Gv-~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v 218 (661)
. .+.++.+...|- +.. ...+.. ... ..+ ...+...|.+.+.+.|+++++++.+
T Consensus 60 ~---~e~~~~~~~~~~~~~~-~~~~~~------------------~~~--~~~--~~~~~~~l~~~l~e~gv~v~~~t~v 113 (428)
T PF12831_consen 60 F---REFLNRLRARGGYPQE-DRYGWV------------------SNV--PFD--PEVFKAVLDEMLAEAGVEVLLGTRV 113 (428)
T ss_dssp H---HHHHHST---------------------------------------------------------------------
T ss_pred H---HHHHHHHhhhcccccc-cccccc------------------ccc--ccc--ccccccccccccccccccccccccc
Confidence 1 111112211111 000 000000 000 000 0123334445556789999999999
Q ss_pred EEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 219 LDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 219 ~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
++++.++++|.||.+.+ +.| ...|+||.||-|||-
T Consensus 114 ~~v~~~~~~i~~V~~~~-~~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 114 VDVIRDGGRITGVIVET-KSG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------
T ss_pred ccccccccccccccccc-ccc-ccccccccccccccc
Confidence 99999999999999876 345 678999999999994
No 114
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.23 E-value=1.6e-10 Score=125.38 Aligned_cols=195 Identities=19% Similarity=0.133 Sum_probs=112.2
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHH----HHHH--HHhccCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHW----HMYD--TVKGSDWL 130 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~----~~~d--~~~~g~~l 130 (661)
.++||+|||||+.|+..|..|+-.|++|+|+||+....|.|+.+.+-+...+.+...+.+.. ..+. ..+...++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 67999999999999999999999999999999998887777776655544333322222211 1000 11112222
Q ss_pred CCHHHH----------HHHHHHHHHHHHHHHHCCCC----cccCCCCcccccccCCcccccCCCCccceeeeccCC--cH
Q psy15089 131 GDQDAI----------HYMTREAPKAVIELENYGMP----FSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADR--TG 194 (661)
Q Consensus 131 ~~~~~~----------~~~~~~~~~~i~~l~~~Gv~----f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~--~g 194 (661)
..|... ..+........+.+ -|+. -.+.-+.+......+.....--+| .....|. ..
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~l--ag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~g-----a~~y~D~~vdd 163 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHL--AGIRKLLPASRVLDPKEALPLEPALKKDGLKG-----AFRYPDGVVDD 163 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHh--hcccccCCcceecchhhhhhcCcccchhhccc-----eEEEccceech
Confidence 111100 00111111111111 1110 000000000000000000000000 0111111 12
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..++-.+...|.+.|.+++..+.|+.+..+++ |.||.+.|..+|+.+.|+|+.||.|||.|...
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 45666677788899999999999999999999 99999999999999999999999999987643
No 115
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.23 E-value=1.6e-10 Score=126.26 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+++++.|++++.++.|+++..+++.++++. .+|+ .+.|+.||+|+|..+
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~----~~g~--~i~A~~VI~A~G~~s 164 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE----ADGD--VIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE----cCCc--EEECCEEEEEeCCCH
Confidence 46788899999999999999999999998888876654 2444 489999999999643
No 116
>PLN02697 lycopene epsilon cyclase
Probab=99.23 E-value=4e-10 Score=124.73 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+++.+.|+++ .+..|+++..+++.+..+.. .+|. .+.|+.||.|+|..+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~---~dG~--~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVAC---EDGR--VIPCRLATVASGAASG 249 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEE---cCCc--EEECCEEEECCCcChh
Confidence 578889999998889997 67789998776655432222 3454 4899999999998763
No 117
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.22 E-value=1.1e-10 Score=128.51 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=37.8
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN 110 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~ 110 (661)
+|||+|||||+||++||+.|++.|.+|+|||+.... .||.+.+.++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~-------~GG~~~~~gc 48 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAM-------YGGTCINIGC 48 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCc-------cceeEeeccc
Confidence 599999999999999999999999999999986421 3555555444
No 118
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.22 E-value=6.4e-10 Score=122.78 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...++..|.+.+++.|+++++++.|+++..++ +.+. +.+.+..+|+...++|+.||+|+|+++.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence 46899999999999999999999999998754 3332 3433334565556899999999998763
No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.22 E-value=2.3e-10 Score=119.02 Aligned_cols=111 Identities=28% Similarity=0.485 Sum_probs=74.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHH
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHY 138 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~ 138 (661)
|||+|||||+||++||..|++.|.+|+|+|+... ||......
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---------gg~~~~~~----------------------------- 42 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP---------GGQLTTTT----------------------------- 42 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC---------Ccceeecc-----------------------------
Confidence 6999999999999999999999999999998742 11110000
Q ss_pred HHHHHHHHHHHHHH-CCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEE
Q psy15089 139 MTREAPKAVIELEN-YGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYF 217 (661)
Q Consensus 139 ~~~~~~~~i~~l~~-~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~ 217 (661)
++.. .+++ ....+..+...+.+.+++.|++++. ..
T Consensus 43 ----------~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~gv~~~~-~~ 78 (300)
T TIGR01292 43 ----------EVENYPGFP---------------------------------EGISGPELMEKMKEQAVKFGAEIIY-EE 78 (300)
T ss_pred ----------cccccCCCC---------------------------------CCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence 0000 0000 0012356777888888889999988 78
Q ss_pred EEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 218 ALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 218 v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
|+++..+++.+. +. ..+++ .+.+|.||+|||...
T Consensus 79 v~~v~~~~~~~~-v~---~~~~~--~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 79 VIKVDLSDRPFK-VK---TGDGK--EYTAKAVIIATGASA 112 (300)
T ss_pred EEEEEecCCeeE-EE---eCCCC--EEEeCEEEECCCCCc
Confidence 888877655332 22 13444 489999999999754
No 120
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.22 E-value=4e-09 Score=114.12 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEc---CCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCL---EDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~---~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+++.+.|++++.. .++++..+++.+ .+...+. .+|+...++|+.||.|+|..+.
T Consensus 92 ~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 92 EVFDSYLRERAQKAGAELIHG-LFLKLERDRDGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 577888999999999999765 588987766654 3444321 1344457999999999997653
No 121
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.22 E-value=1.8e-10 Score=126.63 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=32.4
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
+|||+|||||+||++||+.|++.|.+|+|+||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 5999999999999999999999999999999974
No 122
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.21 E-value=4.3e-11 Score=131.69 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=37.0
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEE 113 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~ 113 (661)
+|||+|||+|+||..||.++ .|.+|+||||.. .||.|.+.++++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~---------~GGtC~n~GCiPs 46 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT---------FGGTCLNVGCIPT 46 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC---------CCCeeeccCccch
Confidence 58999999999999997654 699999999863 5788888876543
No 123
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-11 Score=123.39 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 193 TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE--NGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
.|..+...|.++.++..|+++.--++++|... .+...-+. +.+|.. +++|.||||||.
T Consensus 264 eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~---l~nGav--LkaktvIlstGA 323 (520)
T COG3634 264 EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVE---LANGAV--LKARTVILATGA 323 (520)
T ss_pred cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEE---ecCCce--eccceEEEecCc
Confidence 35678888888999999998888888888873 23333233 367764 899999999996
No 124
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.17 E-value=1.1e-09 Score=119.57 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCC-cEEEEEcCeEEEcCCccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDG-SIHRFNANNTVLATGGYG 257 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G-~~~~i~Ak~VIlAtGg~~ 257 (661)
...++..|.+.+++.|++++.++.|+++..+++.+. +.+.+ .++ +...++|+.||+|+|.++
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-v~~~~-~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVV-LTVQP-SAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEc-CCCCccceEecCEEEECCCcCh
Confidence 357788899999999999999999999988776653 33222 111 023589999999999875
No 125
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.17 E-value=5.9e-10 Score=118.61 Aligned_cols=193 Identities=13% Similarity=0.064 Sum_probs=106.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCC--CcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHH--------HHHHhc
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEG--FKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHM--------YDTVKG 126 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G--~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~--------~d~~~~ 126 (661)
..+||||||||+.|++.|+.|++.+ ++|+||||....+..++.+..|+.+..-+..+.+...-+ +++.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 999999997655544443433443332222333322111 111111
Q ss_pred cC--CCCCHHHHHHH----HHHHHHHHHHHHHCCCC-cccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHH
Q psy15089 127 SD--WLGDQDAIHYM----TREAPKAVIELENYGMP-FSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLH 199 (661)
Q Consensus 127 g~--~l~~~~~~~~~----~~~~~~~i~~l~~~Gv~-f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~ 199 (661)
-. +...+.++-.+ .+......+.+.+.|++ +... +..-.....+..... ..+ .-......+.....++.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~-~~a--al~~p~~giV~~~~~t~ 157 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEG-AVA--ALLVPSGGIVDPGELTR 157 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeec-CHHHHHhhCcccccc-cee--eEEcCCCceEcHHHHHH
Confidence 00 00001111000 11112233344455665 2111 111011111111000 000 00001112223468899
Q ss_pred HHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 200 TLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 200 ~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
.|.+.+.++|+++.++++|+++...++. +...+..+|+.. ++||.||.|.|+++
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg---~~~~~~~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDG---VFVLNTSNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCc---eEEEEecCCcEE-EEeeEEEECCchhH
Confidence 9999999999999999999999987653 333445778766 99999999999876
No 126
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.17 E-value=9.1e-11 Score=130.90 Aligned_cols=63 Identities=14% Similarity=0.022 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...++..+...+++.|++++.++.|+++..+++. .++.+.+.. |+...|+|+.||+|+|.++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 3677888888999999999999999999877654 466665533 77778999999999998763
No 127
>PLN02463 lycopene beta cyclase
Probab=99.16 E-value=6.2e-09 Score=113.54 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+++.+.|++++ ...|+++..+++.+ .|.+ .+|+ .+.|+.||.|+|..+.
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~-~V~~---~dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEESKS-LVVC---DDGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeE-EEEE---CCCC--EEEcCEEEECcCCCcC
Confidence 5788889999988899986 56889988766653 3333 5664 4899999999997553
No 128
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.16 E-value=7.1e-10 Score=121.19 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...++..|.+.+++.|+++++++.|+++..+++.+.++.. .++ .+.|+.||+|+|.++.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t---~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe---CCc---EEeCCEEEECCCcchH
Confidence 3578889999999999999999999999888777766543 334 3889999999998753
No 129
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.16 E-value=3e-10 Score=125.52 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=39.8
Q ss_pred cccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcccccC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTVAAQG 102 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~~a~G 102 (661)
+.++||+|||||++|+++|++|++. |.+|+|||+.....+.|..+.|
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G 70 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGG 70 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCc
Confidence 4568999999999999999999998 8999999998766666655544
No 130
>PRK10262 thioredoxin reductase; Provisional
Probab=99.14 E-value=4.6e-11 Score=125.80 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..+||+|||||+||++||+.|++.|.+|+++|+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 4589999999999999999999999999999965
No 131
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.14 E-value=3.6e-10 Score=118.84 Aligned_cols=150 Identities=28% Similarity=0.334 Sum_probs=83.6
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEE-ecCCCCC-CcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVIT-KLFPTRS-HTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIH 137 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~lie-k~~~~~~-~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~ 137 (661)
||+|||||.||+.||+.|++.|++|+|+. +....+. ....+.||+ -..+.. +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~-----------~kg~L~---------------~ 54 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGI-----------AKGHLV---------------R 54 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEEST-----------THHHHH---------------H
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccc-----------cccchh---------------H
Confidence 89999999999999999999999999994 2211111 111111111 111111 1
Q ss_pred HHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEEEeE
Q psy15089 138 YMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFVEY 216 (661)
Q Consensus 138 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~~~~ 216 (661)
.+-..........+..++.|......+ .+.++ .+| ...|+ ..+.+.+.+.++.. +++++ +.
T Consensus 55 Eidalgg~m~~~aD~~~i~~~~lN~sk----Gpav~---------a~r--~qvDr--~~y~~~~~~~l~~~~nl~i~-~~ 116 (392)
T PF01134_consen 55 EIDALGGLMGRAADETGIHFRMLNRSK----GPAVH---------ALR--AQVDR--DKYSRAMREKLESHPNLTII-QG 116 (392)
T ss_dssp HHHHTT-SHHHHHHHHEEEEEEESTTS-----GGCT---------EEE--EEE-H--HHHHHHHHHHHHTSTTEEEE-ES
T ss_pred HHhhhhhHHHHHHhHhhhhhhcccccC----CCCcc---------chH--hhccH--HHHHHHHHHHHhcCCCeEEE-Ec
Confidence 111111122233334455444322111 01111 112 12232 35666777777764 68875 67
Q ss_pred EEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 217 FALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 217 ~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
+|++|+.++++|+||.. .+|+ .|.|+.||+|||-|.+
T Consensus 117 ~V~~l~~e~~~v~GV~~---~~g~--~~~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 117 EVTDLIVENGKVKGVVT---KDGE--EIEADAVVLATGTFLN 153 (392)
T ss_dssp -EEEEEECTTEEEEEEE---TTSE--EEEECEEEE-TTTGBT
T ss_pred ccceEEecCCeEEEEEe---CCCC--EEecCEEEEecccccC
Confidence 89999999999999886 5776 4999999999998653
No 132
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.13 E-value=1.6e-09 Score=118.10 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=103.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC-CC-cEEEEEecCCCCCCcccccCceEEccCCCCCCCHHH----HHHHHHhc-c-C
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE-GF-KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHW----HMYDTVKG-S-D 128 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~-G~-~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~----~~~d~~~~-g-~ 128 (661)
..+||+|||||++|+++|++|++. |. +|+||||..+..+.|..+.|.+.............. .+.++.+. + +
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~~~ 108 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNYN 108 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhCCC
Confidence 458999999999999999999995 85 899999987666555555554443322111111111 11111111 0 0
Q ss_pred --C-----C---CCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeec---cCCcHH
Q psy15089 129 --W-----L---GDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV---ADRTGH 195 (661)
Q Consensus 129 --~-----l---~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~---~~~~g~ 195 (661)
+ + .+++... .....++.+...|++........+ ...++.................. ......
T Consensus 109 ~~~~~~G~l~~a~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~el-~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~ 183 (407)
T TIGR01373 109 VMFSQRGVLNLCHSTADMD----DGARRVNAMRLNGVDAELLSPEQV-RRVIPILDFSPDARFPVVGGLLQRRGGTARHD 183 (407)
T ss_pred cCEEeccEEEEeCCHHHHH----HHHHHHHHHHHcCCCeEEeCHHHH-HHhCCCCccccccccceeEEEEcCCCCcCCHH
Confidence 0 0 0111111 112233344556776543221111 11112111000000000000000 011124
Q ss_pred HHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 196 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+...|.+.+.+.|++++.++.|+++... ++.+.++.+ .+| .+.|+.||+|+|++..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 67778889999999999999999999764 566666653 455 3899999999998763
No 133
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.10 E-value=2.9e-09 Score=115.37 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=96.4
Q ss_pred cccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCC-CCCcccccCceEEccCCCCCCCHHH--------HHHHHHhc
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPT-RSHTVAAQGGINAALGNMEEDDWHW--------HMYDTVKG 126 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~-~~~s~~a~Gg~~~~~~~~~~d~~~~--------~~~d~~~~ 126 (661)
.+||+|||||++|+++|++|++. |.+|+|+||.... .+.|..+.|.+...... .+++... .+.++...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 80 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYY-TPGSLKARFCRRGNEATKAFCDQ 80 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEcccccc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999998 9999999998643 33343333323222111 1222110 01111111
Q ss_pred cC--C-------C-CCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHH
Q psy15089 127 SD--W-------L-GDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHS 196 (661)
Q Consensus 127 g~--~-------l-~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~ 196 (661)
-. + + .+++.. +......+++.+.|+++.......+. ..++.... . .+...+.. .......
T Consensus 81 ~~~~~~~~G~l~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~-~~~P~l~~-~-~al~~p~~---g~vd~~~ 150 (393)
T PRK11728 81 HGIPYEECGKLLVATSELEL----ERMEALYERARANGIEVERLDAEELR-EREPNIRG-L-GAIFVPST---GIVDYRA 150 (393)
T ss_pred cCCCcccCCEEEEEcCHHHH----HHHHHHHHHHHHCCCcEEEeCHHHHH-HhCCCccc-c-ceEEcCCc---eEECHHH
Confidence 00 0 0 011111 11122233444456543221111100 00110000 0 00000000 0012367
Q ss_pred HHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 197 LLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 197 l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+...|.+.+++.|++++.++.|+++..+++.+ .+.. .+| .+.|+.||+|+|.++
T Consensus 151 l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~V~~---~~g---~i~ad~vV~A~G~~s 204 (393)
T PRK11728 151 VAEAMAELIQARGGEIRLGAEVTALDEHANGV-VVRT---TQG---EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEecCCeE-EEEE---CCC---EEEeCEEEECCCcch
Confidence 88999999999999999999999988776654 3332 444 489999999999765
No 134
>PRK06126 hypothetical protein; Provisional
Probab=99.09 E-value=3.5e-09 Score=119.83 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+++. ++++++++.++++..+++.|. +.+.+..+|+...+.||.||.|+|..+.
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 35677888888765 899999999999998877665 5555656787778999999999998774
No 135
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.09 E-value=3.5e-09 Score=110.17 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=44.8
Q ss_pred HHHHHHhC-CcEEEEeEEEEEEEEe--CCEEEEEEEEEcCCC-cEEEEEcCeEEEcCCcccc
Q psy15089 201 LYGQSLRY-DCNYFVEYFALDLIIE--NGECKGVIALCLEDG-SIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 201 L~~~a~~~-gv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G-~~~~i~Ak~VIlAtGg~~~ 258 (661)
++..+.+. +++|+.++.|++|+.+ +++++||.+.+.... ..+.+.||.||||.|+++.
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence 33344455 8999999999999886 689999999884433 3567888999999998763
No 136
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.08 E-value=8.7e-10 Score=117.26 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+.+++.|++++.++.++++..+++.+.... .+..+|+...++||.||.|+|..+
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~-~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVV-RDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEE-EETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHHhhhhhhhhhhhhheeeeeccccccccccccccc-ccccCCceeEEEEeeeecccCccc
Confidence 46888999999999999999999999998888776544 344678888899999999999765
No 137
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.08 E-value=1.3e-09 Score=112.85 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+.|++++.++.++++..+++.+. +.. .++ ...++||.||+|+|..+.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~---~~~-~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIV---RGG-EGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEE---cCc-cEEEEeCEEEECCCcchH
Confidence 56788899999999999999999999988877543 221 222 235899999999997653
No 138
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.08 E-value=5.3e-09 Score=115.65 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLRYD-CNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...+.+.|.+.+++.| +++++++.|+++..++ +.+. +.+.+..+|+...|.|+.||+|+|+++.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 3578899999998886 8999999999998754 4332 4433334565445899999999999764
No 139
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.07 E-value=9.4e-10 Score=118.67 Aligned_cols=186 Identities=16% Similarity=0.119 Sum_probs=95.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCC-CCcccccCceEEccCCCCCCCH-HH------HHHHHHhc-cC-
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTR-SHTVAAQGGINAALGNMEEDDW-HW------HMYDTVKG-SD- 128 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~-~~s~~a~Gg~~~~~~~~~~d~~-~~------~~~d~~~~-g~- 128 (661)
+||+|||||++|+++|++|++.|.+|+||||..... +++....+++..... ..+.. .. .+.+..+. +.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~--~~~~~~~l~~~s~~~~~~l~~~~~~~ 78 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY--PEDFYTPMMLECYQLWAQLEKEAGTK 78 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeecc--CchhHhHHHHHHHHHHHHHHHHhCCe
Confidence 699999999999999999999999999999975532 222222233322111 11111 00 01111110 10
Q ss_pred CCCCHHHHHH-H--HHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeec--cCCcHHHHHHHHHH
Q psy15089 129 WLGDQDAIHY-M--TREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV--ADRTGHSLLHTLYG 203 (661)
Q Consensus 129 ~l~~~~~~~~-~--~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~--~~~~g~~l~~~L~~ 203 (661)
.......+.. . .+......+.+.+.|++........+ ...+++.......+ -.+.. .......+.+.|.+
T Consensus 79 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~-~~~~P~l~~~~~~~----~~~~~~~g~i~p~~~~~~l~~ 153 (380)
T TIGR01377 79 LHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQL-KQRFPNIRVPRNEV----GLLDPNGGVLYAEKALRALQE 153 (380)
T ss_pred eEeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHH-HHhCCCCcCCCCce----EEEcCCCcEEcHHHHHHHHHH
Confidence 0000000000 0 01122334455566765432211111 01111111000000 00000 00123578888888
Q ss_pred HHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 204 QSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 204 ~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+++.|++++.++.|+++..+++.+. +.. .++ .|.|+.||+|+|++..
T Consensus 154 ~~~~~g~~~~~~~~V~~i~~~~~~~~-v~~---~~~---~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 154 LAEAHGATVRDGTKVVEIEPTELLVT-VKT---TKG---SYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHcCCEEECCCeEEEEEecCCeEE-EEe---CCC---EEEeCEEEEecCcchH
Confidence 88889999999999999987766542 332 344 4899999999998753
No 140
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.06 E-value=3.7e-09 Score=126.67 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.9
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
...+||+|||||+|||+||+.|++.|++|+|+|+...
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3468999999999999999999999999999999754
No 141
>PRK06185 hypothetical protein; Provisional
Probab=99.06 E-value=3.1e-09 Score=115.77 Aligned_cols=62 Identities=27% Similarity=0.280 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. |++++.++.++++..+++.+.|+.+.. .+|+ ..++|+.||.|+|+.+.
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-PDGP-GEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-CCCc-EEEEeCEEEECCCCchH
Confidence 46778888888765 899999999999999888888877643 3443 46899999999998874
No 142
>PRK12831 putative oxidoreductase; Provisional
Probab=99.05 E-value=2.3e-09 Score=118.24 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=33.0
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
....||+|||||+||++||+.|++.|++|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 345799999999999999999999999999999864
No 143
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.04 E-value=8.7e-09 Score=121.77 Aligned_cols=56 Identities=30% Similarity=0.427 Sum_probs=43.0
Q ss_pred CcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 409 Gi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
|+.+|.+|.+...+....|++||+||+|||+. | .....+|+-.|+.||.++.+++.
T Consensus 572 gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~----G-----~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 572 GLKTNKWGTIEVEKGSQRTSIKGVYSGGDAAR----G-----GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CceECCCCCEEECCCCCccCCCCEEEEEcCCC----C-----hHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777777654433346799999999999862 2 34567899999999999999874
No 144
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.04 E-value=2.2e-09 Score=125.03 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=32.3
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
.-+|+|||||+||++||..|++.|++|+|+|+...
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 46899999999999999999999999999998743
No 145
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.03 E-value=2.2e-09 Score=104.64 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=39.5
Q ss_pred HHHHHHhCCcEEEEeEEEEEEEEeCCEEE-E-EEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 201 LYGQSLRYDCNYFVEYFALDLIIENGECK-G-VIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 201 L~~~a~~~gv~i~~~~~v~~l~~~~g~v~-G-v~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+.+++...+++++.+..++++....+.+. + +......+++...+.+|.||+|||+..
T Consensus 64 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 64 LVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred cccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 44455567899988899999988777642 1 112122455667899999999999643
No 146
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.03 E-value=1.8e-09 Score=107.37 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
|..+.+.|..+++..|+-++.+-.|++....+++|..+.+. +.....++|+..|||||++
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec---ccccCCCChhHeeeecccc
Confidence 34555667888888999999999999999999999888764 4555679999999999974
No 147
>PLN02985 squalene monooxygenase
Probab=99.02 E-value=7e-09 Score=115.49 Aligned_cols=63 Identities=22% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+++.+. +++++.+ .+++++.+++.+.||.+.+ .+|+...+.|+.||.|+|..+..
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 46888899888776 6888754 6888888888888988754 57777778999999999988753
No 148
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.01 E-value=3.9e-09 Score=117.11 Aligned_cols=46 Identities=33% Similarity=0.468 Sum_probs=38.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM 111 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~ 111 (661)
..|||+|||||+||+.||++|++.|++|+|||+.. .||.|.+.++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~---------~GG~c~~~gci 48 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK---------LGGTCLHKGCI 48 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC---------CCcceEcCCcC
Confidence 46999999999999999999999999999999852 45666655543
No 149
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=2.9e-09 Score=114.70 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=95.1
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCC-CCcccccCce-EEccCCCCCCCHH------HHHHHHHhc---
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTR-SHTVAAQGGI-NAALGNMEEDDWH------WHMYDTVKG--- 126 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~-~~s~~a~Gg~-~~~~~~~~~d~~~------~~~~d~~~~--- 126 (661)
++||+|||||++|+++|++|++.|.+|+||||..... +++.....++ ....+. .....+ ..+.+..+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~-~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGE-GPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccC-CchhhHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999986542 2222211122 111111 011110 011111110
Q ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeecc--CCcHHHHH
Q psy15089 127 ------SDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVA--DRTGHSLL 198 (661)
Q Consensus 127 ------g~~l~~~~~~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~--~~~g~~l~ 198 (661)
|......+.. +.....++.+.++|++........+ ...++.....-.. .-.+... ......++
T Consensus 82 ~~~~~~G~l~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~P~l~~~~~~----~a~~~~~~g~v~p~~~~ 152 (376)
T PRK11259 82 PLFVRTGVLNLGPADS----DFLANSIRSARQHGLPHEVLDAAEI-RRRFPQFRLPDGY----IALFEPDGGFLRPELAI 152 (376)
T ss_pred ccEEEECCEEEcCCCC----HHHHHHHHHHHHcCCCcEEECHHHH-HHhCCCCcCCCCc----eEEEcCCCCEEcHHHHH
Confidence 1000000000 0111233445556765432111000 0111111000000 0000000 01235677
Q ss_pred HHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 199 HTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 199 ~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.+.+.|++++.++.|+++..+++.+ .+. ..+| .+.|+.||+|+|+++.
T Consensus 153 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 153 KAHLRLAREAGAELLFNEPVTAIEADGDGV-TVT---TADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEeeCCeE-EEE---eCCC---EEEeeEEEEecCcchh
Confidence 888888888999999999999998876643 232 2455 4889999999998754
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.01 E-value=5.5e-09 Score=112.09 Aligned_cols=47 Identities=28% Similarity=0.467 Sum_probs=39.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceE
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGIN 105 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~ 105 (661)
+||+|||||++|+++|++|++.|.+|+||||.....+.|..+.|.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~ 47 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVW 47 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEE
Confidence 69999999999999999999999999999998765555555545443
No 151
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.99 E-value=1.5e-08 Score=111.36 Aligned_cols=64 Identities=16% Similarity=0.038 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLR-YDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~-~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...+.+.|.+.+.+ .|+++++++.|+++..+ ++.+. +.+.+..+|+...+.|+.||+|+|+++.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 45788889888865 48999999999999876 55443 2322234454335899999999998874
No 152
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.97 E-value=6.9e-09 Score=113.34 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. ++++++++.++++..+++.+. +.+. .+++...++||.||.|+|..+.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~--~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLE--IEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEc--cCCcceEEeeeEEEEeCCCCch
Confidence 35778888888775 799999999999987766543 3332 2344456999999999998764
No 153
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.97 E-value=8e-09 Score=111.66 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+.+ ++++.++.|+.+..+++.+. +.. +. +|+ ++.|+.||-|.|..|.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l-~~-dG~--~~~a~llVgADG~~S~ 163 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTL-SF-DGE--TLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEE-cC-CCc--EEecCEEEECCCCchH
Confidence 578899999998876 99999999999999887776 443 22 776 6999999999997764
No 154
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.97 E-value=1.8e-08 Score=120.13 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=32.0
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
..+|+|||||+|||+||..|++.|++|+|+|+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4699999999999999999999999999999874
No 155
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.97 E-value=1.5e-08 Score=116.97 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccC
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY 260 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~ 260 (661)
..++..|.+.+++ |++++.++.|+++..+++.+. +. ..+|. .+.|+.||+|+|.++...
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~-v~---t~~g~--~~~ad~VV~A~G~~s~~l 466 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQ-LD---FAGGT--LASAPVVVLANGHDAARF 466 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEE-EE---ECCCc--EEECCEEEECCCCCcccc
Confidence 5889999999988 999999999999988777554 32 24554 368999999999876543
No 156
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.96 E-value=1.3e-08 Score=111.54 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=33.3
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
...+||+||||||||++||+.|+++|++|+|+||..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345999999999999999999999999999999974
No 157
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.96 E-value=8.9e-09 Score=111.29 Aligned_cols=193 Identities=18% Similarity=0.174 Sum_probs=101.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCC-CH------HHHHHHHH-hccC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEED-DW------HWHMYDTV-KGSD 128 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d-~~------~~~~~d~~-~~g~ 128 (661)
.++||+|||||++|+++|++|++.|.+|+|+|+.....+++..+.+++.........+ .. ...+++.. ....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999998877777777777766555432100 00 00111111 1110
Q ss_pred ---CCCCHHHHHHHHH-------HHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHH
Q psy15089 129 ---WLGDQDAIHYMTR-------EAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLL 198 (661)
Q Consensus 129 ---~l~~~~~~~~~~~-------~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~ 198 (661)
.+.....+..... ........+............... ....+........++. ............++
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~a~--~~~~~~~~~p~~~~ 159 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEA-AELEPALGPDFVCGGL--FDPTGGHLDPRLLT 159 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHH-HHhCCCCCcccceeeE--ecCCCCcCCHHHHH
Confidence 0111111111111 122222333333332100000000 0000000000000000 00001111236888
Q ss_pred HHHHHHHHhCCc-EEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 199 HTLYGQSLRYDC-NYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 199 ~~L~~~a~~~gv-~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
+.|.+.++++|+ .+..++.++.+..+. ++.+|.+ .+|+ +.|+.||+|+|.++..
T Consensus 160 ~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t---~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 160 RALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVET---DGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEe---CCcc---EEeCEEEEcCchHHHH
Confidence 999999999994 555578888887653 5555543 4554 8999999999987643
No 158
>KOG0042|consensus
Probab=98.96 E-value=1e-10 Score=123.06 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=107.5
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccc----cCceEEccCCCCCCCHHHH---HH------H
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAA----QGGINAALGNMEEDDWHWH---MY------D 122 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a----~Gg~~~~~~~~~~d~~~~~---~~------d 122 (661)
.+++||||||||..|.-+|+-|+-.|+||.|||++....|.|+.+ .||+...-.....-+++++ .. .
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999987765554433 3444311000001111110 00 1
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHHH----CCCCcccCCCCc------ccc------cccCCcccccCCCCccce-
Q psy15089 123 TVKGSDWLGDQDAIHYMTREAPKAVIELEN----YGMPFSRTTDGK------IYQ------RAFGGQSLKYGKGGQAHR- 185 (661)
Q Consensus 123 ~~~~g~~l~~~~~~~~~~~~~~~~i~~l~~----~Gv~f~~~~~g~------~~~------~~~gg~~~~~~~g~~~~r- 185 (661)
+++...+++.+--+.. ....|+.- .|+.+-..-.|. ++. ..|+-... .....
T Consensus 145 lle~APhLs~~lPIml------Pvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~-----~~L~Ga 213 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIML------PVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRK-----DNLKGA 213 (680)
T ss_pred HhhcCccccCCcceee------ehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccc-----cCceeE
Confidence 1122222222211110 11122221 133321111111 000 00110000 00000
Q ss_pred e-eeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 186 C-CAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 186 ~-~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+ .+-+......+.-.++=.|.++|..+....+|.+|++++ +++.|+.+.|..+|+.+.|+||.||.|||-++
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 1 111222223455556666778999999999999999964 78999999999999999999999999999665
No 159
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.95 E-value=7.4e-09 Score=121.30 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=32.5
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
..+|+|||||+||++||+.|++.|++|+|+|+...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999998743
No 160
>PRK06184 hypothetical protein; Provisional
Probab=98.95 E-value=1.5e-08 Score=113.42 Aligned_cols=61 Identities=10% Similarity=-0.082 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+.|++++.+++++++..+++.+.. ...+..+ ...++||.||.|+|+.+.
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~~~--~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQDADGVTA-RVAGPAG--EETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEE-EEEeCCC--eEEEEeCEEEECCCCchH
Confidence 356678888888889999999999999887765542 2222122 346999999999998774
No 161
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.95 E-value=2.3e-08 Score=108.36 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|++.+.+.|+++++++.++++...++..+.+... .+|+...++||.||.|.|..|.
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~--~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE--KDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE--cCCeEEEEEeCEEEECCCCCCc
Confidence 4677788888888899999999999987633333344432 4677678999999999997764
No 162
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.94 E-value=3.1e-08 Score=109.28 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHh----CC--cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 194 GHSLLHTLYGQSLR----YD--CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 194 g~~l~~~L~~~a~~----~g--v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
...+...|.+.+++ .| +++++++.|++|..+++.+..+.+ .+| .|+|+.||+|+|+++.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T---~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT---NRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE---CCC---EEEeCEEEECcChhHH
Confidence 35788999999988 77 889999999999887565544432 455 3899999999999874
No 163
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.92 E-value=2.1e-07 Score=107.26 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=32.9
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~ 93 (661)
..+|+|||||+|||+||..|++.|++|+|+|+....
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 469999999999999999999999999999997543
No 164
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.92 E-value=2.4e-07 Score=102.62 Aligned_cols=37 Identities=35% Similarity=0.370 Sum_probs=33.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~ 93 (661)
...+|+|||+|+||++||..|++.|++|+|+|+....
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999997543
No 165
>KOG1298|consensus
Probab=98.90 E-value=8.1e-09 Score=104.80 Aligned_cols=167 Identities=21% Similarity=0.239 Sum_probs=98.2
Q ss_pred ccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 55 ~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
.+..+||+|||+|.+|.+.|..|++.|.||.|||+.-. .+| ...-+.+..|+.+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~-------------------EPd---RivGEllQPGG~~~--- 96 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS-------------------EPD---RIVGELLQPGGYLA--- 96 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccc-------------------cch---HHHHHhcCcchhHH---
Confidence 45579999999999999999999999999999999621 111 12222222222110
Q ss_pred HHHHHHHHHHHHHHHHHH---CCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-Cc
Q psy15089 135 AIHYMTREAPKAVIELEN---YGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DC 210 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l~~---~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv 210 (661)
+.+.=. .+.++..+. .|+..- .+|+-..-.++-..++. ...-|.++. ..+++.|.+.+... +|
T Consensus 97 L~~LGl---~Dcve~IDAQ~v~Gy~if--k~gk~v~~pyP~~~f~~---d~~GrsFhn-----GRFvq~lR~ka~slpNV 163 (509)
T KOG1298|consen 97 LSKLGL---EDCVEGIDAQRVTGYAIF--KDGKEVDLPYPLKNFPS---DPSGRSFHN-----GRFVQRLRKKAASLPNV 163 (509)
T ss_pred HHHhCH---HHHhhcccceEeeeeEEE--eCCceeeccCCCcCCCC---Ccccceeec-----cHHHHHHHHHHhcCCCe
Confidence 000001 122222221 232211 12221111111111100 011122221 26788888877665 67
Q ss_pred EEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCC
Q psy15089 211 NYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYF 261 (661)
Q Consensus 211 ~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~ 261 (661)
++ ++..|.+|+.++|.|.||...+ +.|+..+..|..+|+|.|-|+..-.
T Consensus 164 ~~-eeGtV~sLlee~gvvkGV~yk~-k~gee~~~~ApLTvVCDGcfSnlRr 212 (509)
T KOG1298|consen 164 RL-EEGTVKSLLEEEGVVKGVTYKN-KEGEEVEAFAPLTVVCDGCFSNLRR 212 (509)
T ss_pred EE-eeeeHHHHHhccCeEEeEEEec-CCCceEEEecceEEEecchhHHHHH
Confidence 75 5556999999999999999887 6666788999999999999886543
No 166
>PRK11445 putative oxidoreductase; Provisional
Probab=98.90 E-value=3.2e-08 Score=105.49 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+. .+.|++++.++.++++..+++.+. +... .+|+...++|+.||.|+|..+.
T Consensus 99 ~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~-v~~~--~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 99 HKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYH-VIFR--ADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEE-EEEe--cCCcEEEEEeCEEEECCCCCcH
Confidence 4566666653 467899999999999887665432 3332 4565557999999999998764
No 167
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.89 E-value=2.4e-08 Score=108.18 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+.+++.|++++.++.++++..+++.+. +. ..+|+ .+.|+.||.|+|..+
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~---~~~g~--~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVR-LR---LDDGR--RLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEE-EE---ECCCC--EEEeCEEEEecCCCc
Confidence 47788898888889999999999999987766543 32 24565 489999999999766
No 168
>PRK08244 hypothetical protein; Provisional
Probab=98.89 E-value=3.1e-08 Score=110.66 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+++.|++++.++.++++..+++.+. +.+.+ .+| ...++|+.||.|+|..+.
T Consensus 100 ~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 100 AETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRG-PDG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEe-CCc-cEEEEeCEEEECCCCChH
Confidence 35667788888888999999999999987776553 33332 345 346899999999998763
No 169
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.89 E-value=3.4e-08 Score=106.68 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+.+ ++++.++.|+++..+++.+. +. ..+|+ .+.||.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LT---LDDGQ--QLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EE---ECCCC--EEEeeEEEEeCCCCCH
Confidence 478889999998887 99999999999988766543 32 25665 3899999999997653
No 170
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.87 E-value=2.5e-08 Score=108.52 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+.|++++.++.++++..+++.+. +. ..+|+ .+.||.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~---~~~g~--~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVT-VT---LSDGS--VLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEE-EE---ECCCC--EEEeCEEEEcCCCChH
Confidence 57888999999888999999999999987766543 32 24565 4899999999997653
No 171
>PRK07190 hypothetical protein; Provisional
Probab=98.87 E-value=2.8e-08 Score=110.20 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+++++.|++++.++.|+++..+++.+. +. ..+|+ .++||.||.|+|+.+
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~---v~-~~~g~--~v~a~~vVgADG~~S 165 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL---TT-LSNGE--RIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE---EE-ECCCc--EEEeCEEEECCCCCH
Confidence 35667788888889999999999999998776543 21 14554 589999999999866
No 172
>PRK06834 hypothetical protein; Provisional
Probab=98.87 E-value=3.1e-08 Score=109.97 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+++.|++++.++.++++..+++.+. +. ..+|+ .++|+.||.|+|+.+.
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~-v~---~~~g~--~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTGVD-VE---LSDGR--TLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEE-EE---ECCCC--EEEeCEEEEecCCCCC
Confidence 46777888888888999999999999998776543 22 24554 5899999999998763
No 173
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.86 E-value=1.6e-08 Score=111.71 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=32.4
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
...+|+|||||+||++||..|++.|++|+|+|+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 34799999999999999999999999999999874
No 174
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.86 E-value=1.6e-07 Score=100.26 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 193 TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
.|..+.+.|.+.++++|++++.+..|+++..+++++.++.+ .++....+.||.||||||+|
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t---~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHT---RNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEe---cCCccceEECCEEEEccCCC
Confidence 45778888999999999999999999999999998888664 33323458999999999987
No 175
>PRK09126 hypothetical protein; Provisional
Probab=98.86 E-value=4e-08 Score=106.49 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHh-CCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLR-YDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~-~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+ .|++++.++.++++..+++.+ .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~-~v~~---~~g~--~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA-QVTL---ANGR--RLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE-EEEE---cCCC--EEEeCEEEEeCCCCch
Confidence 3566777777654 589999999999998766643 2332 4564 4899999999997653
No 176
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.85 E-value=5.9e-08 Score=109.54 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. |++++.+++++++..+++.+. +.+.+ .+|+...++||.||.|+|..+.
T Consensus 113 ~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 113 PLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTD-ADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEc-CCCCEEEEEEEEEEecCCCchh
Confidence 35667788877765 899999999999988776653 33332 3676678999999999998774
No 177
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.85 E-value=8.2e-08 Score=105.61 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEe--C--CEEEEEEEEEc-CCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIE--N--GECKGVIALCL-EDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~--~--g~v~Gv~~~~~-~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..++..|.+.++++||++++++.|++|+.+ + ++|+|+.+... ..+......+|.||+|+||+...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 678999999999999999999999999985 4 68999988631 12223345679999999998864
No 178
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.85 E-value=6.4e-09 Score=114.19 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=36.1
Q ss_pred HhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 206 LRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 206 ~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+.|++++.+++|+++..++..|. +.+..+++...+.+|.+|||||+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~---~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVT---VLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEE---EEECCCCcEEeeecCEEEECCCCCCC
Confidence 346899999999999987766533 33323345556789999999998653
No 179
>PRK06847 hypothetical protein; Provisional
Probab=98.85 E-value=8.7e-08 Score=103.16 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
...+.+.|.+.+.+.|++++.++.++++..+++.+. +.. .+|+ .+.||.||.|+|..+..
T Consensus 106 r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 106 RPALARILADAARAAGADVRLGTTVTAIEQDDDGVT-VTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEE-EEE---cCCC--EEEcCEEEECcCCCcch
Confidence 357888898888888999999999999987665432 322 4565 48899999999987643
No 180
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.84 E-value=7.7e-08 Score=104.10 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+++.| ++++ ++.++++..+++.+. +.+ .+|+ .++|+.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~---~~g~--~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTL---ADGQ--VLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEE---CCCC--EEEeeEEEEeCCCCch
Confidence 578888989898887 9988 889999887666543 332 4554 4899999999998764
No 181
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.84 E-value=6.1e-08 Score=106.42 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHhCCcE--EEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 193 TGHSLLHTLYGQSLRYDCN--YFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
++.++.+.|.+.++..|+. |.++++|+++..++++.. |...+ .++......+|+||+|||.++.
T Consensus 109 ~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~-V~~~~-~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 109 SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWR-VQSKN-SGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEE-EEEEc-CCCceEEEEcCEEEEeccCCCC
Confidence 3468899999999998987 889999999987766543 33222 2233345678999999997654
No 182
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=3.9e-09 Score=112.17 Aligned_cols=151 Identities=26% Similarity=0.308 Sum_probs=86.1
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCC--CCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTR--SHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~--~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
+|||+|||||.||+-||+.+++.|++|+|+.-....- -.+..+.||+....-...-|.. | +
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDAL----------G-G------ 66 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDAL----------G-G------ 66 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhc----------c-c------
Confidence 4999999999999999999999999999998753211 1122234554321100000110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhC-CcEEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFV 214 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~-gv~i~~ 214 (661)
.+-...++.|+.|......+ |..++-+....|+ ..+.+.+.+.++.. ++.++.
T Consensus 67 ---------~Mg~~~D~~~IQ~r~LN~sK---------------GPAVra~RaQaDk--~~Y~~~mk~~le~~~NL~l~q 120 (621)
T COG0445 67 ---------LMGKAADKAGIQFRMLNSSK---------------GPAVRAPRAQADK--WLYRRAMKNELENQPNLHLLQ 120 (621)
T ss_pred ---------hHHHhhhhcCCchhhccCCC---------------cchhcchhhhhhH--HHHHHHHHHHHhcCCCceehH
Confidence 00011223466664332211 1111111112222 23334444444443 677654
Q ss_pred eEEEEEEEEeCC-EEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 215 EYFALDLIIENG-ECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 215 ~~~v~~l~~~~g-~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..|.+|+.+++ +|+||+. .+|.. |.|++|||+||-|=
T Consensus 121 -~~v~dli~e~~~~v~GV~t---~~G~~--~~a~aVVlTTGTFL 158 (621)
T COG0445 121 -GEVEDLIVEEGQRVVGVVT---ADGPE--FHAKAVVLTTGTFL 158 (621)
T ss_pred -hhhHHHhhcCCCeEEEEEe---CCCCe--eecCEEEEeecccc
Confidence 56999999777 6999986 56754 99999999999764
No 183
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.84 E-value=8.5e-08 Score=106.39 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=43.6
Q ss_pred CcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 409 Gi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
|+.++.+|.+...++...|++||+||+|||+. + ......|+..|++||.+|.+++..
T Consensus 424 gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~-g--------~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 424 GVKKTRRGNISAGYDDYSTSIPGVFAAGDCRR-G--------QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CcccCCCCCEEecCCCceECCCCEEEeeccCC-C--------cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777765555567899999999999862 2 124567899999999999999854
No 184
>PRK02106 choline dehydrogenase; Validated
Probab=98.83 E-value=8.3e-08 Score=108.76 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=43.5
Q ss_pred hCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 207 RYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 207 ~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
+.+++|+.++.|++|+.++++++||.+.+ .++....+.||.||||+|++..
T Consensus 213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~-~~~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEGKRAVGVEYER-GGGRETARARREVILSAGAINS 263 (560)
T ss_pred CCCcEEEcCCEEEEEEEeCCeEEEEEEEe-CCcEEEEEeeeeEEEccCCCCC
Confidence 45799999999999999988999999876 4455666789999999998764
No 185
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.83 E-value=3.6e-08 Score=115.38 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=32.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
...+|+|||||+||++||..|++.|++|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999999999999999999999999863
No 186
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.82 E-value=8.8e-08 Score=103.11 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+++.+.+ ++++.++.++++..+++.+. +. + .++ .++||.||.|+|..|..
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~-~--~~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IK-F--DDK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EE-E--cCC---EEeeCEEEEeCCCCchh
Confidence 578889999888875 89999999999988766543 32 2 344 58999999999987743
No 187
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.82 E-value=8e-08 Score=104.12 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. |++++.++.++++..+++.+. +. ..+|+ .++|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWE-LT---LADGE--EIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEE-EE---ECCCC--EEEeCEEEEeCCCCch
Confidence 46778888888776 999999999999887665432 22 24564 4899999999998764
No 188
>PRK08013 oxidoreductase; Provisional
Probab=98.81 E-value=8.3e-08 Score=104.28 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. |++++.++.++++..+++.+. +. ..+|+ .++||.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~---~~~g~--~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LT---LKDGS--MLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EE---EcCCC--EEEeeEEEEeCCCCcH
Confidence 46788888888876 799999999999987665432 22 24565 4899999999998764
No 189
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.81 E-value=5e-08 Score=106.20 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+.|++++.++.++++..+++.+. +. ..+|+ .+.|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~---~~~g~--~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDWL-LT---LADGR--QLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEE-EE---ECCCC--EEEeCEEEEecCCCch
Confidence 46777888888888999999999999987665432 32 24564 4899999999998774
No 190
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.80 E-value=8.8e-08 Score=103.64 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+...|.+.+.+.|++++++..++.+...++...+|... .+|+...++||.||-|.|..|..
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~--~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFE--RDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEE--ECCeEEEEEeCEEEECCCCchhh
Confidence 4667788888888899999998888776533333345442 36766679999999999987743
No 191
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.79 E-value=2.8e-07 Score=98.08 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=32.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~ 93 (661)
.||+|||||++|+.||+.|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999999999986543
No 192
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.79 E-value=1.1e-07 Score=102.67 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 196 SLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 196 ~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+...|.+.+.+. +++++.++.++++..+++.+. +. ..+|+ .+.|+.||.|+|..+.
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~---~~~g~--~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VT---LESGA--EIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EE---ECCCC--EEEeeEEEEecCCCch
Confidence 4666777776654 799999999999988766543 22 25664 5899999999998764
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.78 E-value=1.1e-08 Score=111.07 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=29.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCC--cEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGF--KTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~--~V~liek~ 90 (661)
..+|||||||+||++||..|++.|. +|+|+++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e 37 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE 37 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 3579999999999999999999876 79999986
No 194
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.77 E-value=6.8e-08 Score=110.96 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.3
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
..+|+|||+|+||++||..|++.|++|+|+|+...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999999999999999999999999998743
No 195
>PRK09897 hypothetical protein; Provisional
Probab=98.77 E-value=2.1e-07 Score=103.25 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=83.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCC--CcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHH
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEG--FKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAI 136 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G--~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~ 136 (661)
.+|+|||||++|+++|.+|.+.+ .+|+|+|+....+.+..+.... ....+.............+.+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~-----------~~~~L~~N~~~~~~p~~~~~f~ 70 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEE-----------NSKMMLANIASIEIPPIYCTYL 70 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCC-----------ChHHHHhcccccccCCChHHHH
Confidence 47999999999999999999864 4899999975444332222110 0000000000000001112222
Q ss_pred HHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCC--cEEEE
Q psy15089 137 HYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD--CNYFV 214 (661)
Q Consensus 137 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~g--v~i~~ 214 (661)
+++... ...++.+.|++.....++.+. +|..+. ..-......+.+.+...| ++++.
T Consensus 71 ~Wl~~~---~~~~~~~~g~~~~~l~~~~f~-----------------PR~l~G--~YL~~~f~~l~~~a~~~G~~V~v~~ 128 (534)
T PRK09897 71 EWLQKQ---EDSHLQRYGVKKETLHDRQFL-----------------PRILLG--EYFRDQFLRLVDQARQQKFAVAVYE 128 (534)
T ss_pred HHhhhh---hHHHHHhcCCcceeecCCccC-----------------Ceecch--HHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 222211 112244456554333222322 222110 001344455666666776 67788
Q ss_pred eEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 215 ~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
.++|+++..+++.+. +.. .++. ..+.|+.||||||..
T Consensus 129 ~~~V~~I~~~~~g~~---V~t-~~gg-~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 129 SCQVTDLQITNAGVM---LAT-NQDL-PSETFDLAVIATGHV 165 (534)
T ss_pred CCEEEEEEEeCCEEE---EEE-CCCC-eEEEcCEEEECCCCC
Confidence 889999987766432 221 2321 248899999999963
No 196
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.76 E-value=1.4e-07 Score=101.90 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. |++++.++.++++..+++.+. +.. .+|+ .+.||.||.|+|..+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTL---DNGQ--QLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEE---CCCC--EEEeeEEEEecCCChH
Confidence 57888999988874 999999999999987766542 322 4565 4899999999997653
No 197
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.75 E-value=1.4e-07 Score=102.49 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+.+.+.+ ++++.++.++++..+++.+. + .. .+|+ .+.|+.||.|+|..+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v--~~-~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-V--FD-QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-E--EE-cCCC--EEecCEEEECCCcChHH
Confidence 467788888887764 99999999999987665433 2 22 4564 48999999999988754
No 198
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.74 E-value=3.2e-07 Score=103.39 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=43.1
Q ss_pred HHHH-hCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 203 GQSL-RYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 203 ~~a~-~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..++ +.|++|+.++.|++|+.++++++||.+.+ .++....+.||.||||.|++..
T Consensus 201 ~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 201 HPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKK-GGRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred hhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEe-CCcEEEEEEeeeEEEccCCCCC
Confidence 3344 55799999999999999989999998865 2333445688999999998653
No 199
>PRK07045 putative monooxygenase; Reviewed
Probab=98.73 E-value=2.1e-07 Score=100.70 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHh-CCcEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLR-YDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~-~gv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+ .|+++++++.++++..++ +.++.+.. .+|+ .+.|+.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 4677788888754 579999999999998864 44445543 4565 4899999999998773
No 200
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.73 E-value=2.2e-07 Score=100.63 Aligned_cols=57 Identities=21% Similarity=0.107 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+++.+.+ +. +.++.|+++..+++.+. +. ..+|+ .+.||.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 111 WLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VT---LADGT--TLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EE---ECCCC--EEEEeEEEEecCCCch
Confidence 567888888888775 55 77999999987766543 32 24564 4899999999998663
No 201
>PRK13984 putative oxidoreductase; Provisional
Probab=98.73 E-value=1.4e-06 Score=99.91 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=33.8
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTR 94 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~ 94 (661)
...+|+|||+|+||++||..|++.|++|+|+|+....+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45689999999999999999999999999999976443
No 202
>PRK07538 hypothetical protein; Provisional
Probab=98.73 E-value=2.2e-07 Score=101.45 Aligned_cols=63 Identities=10% Similarity=-0.076 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHh-CC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLR-YD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~-~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+ .| .+++.++.++++..+++.++ +.+.+..+|+...+.||.||.|+|..+.
T Consensus 102 ~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 102 GELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEECCCCCHH
Confidence 4677888888765 46 57999999999987654322 2223334555567999999999998774
No 203
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.72 E-value=5.9e-08 Score=94.83 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 193 TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
++..+.+.|...+++.++++.+++.|+++..+++... +. ..++ ..++|+.||+|||.++..
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~-v~---~~~~--~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWT-VT---TRDG--RTIRADRVVLATGHYSHP 140 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEE-EE---ETTS---EEEEEEEEE---SSCSB
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEE-EE---EEec--ceeeeeeEEEeeeccCCC
Confidence 4577888888889999999999999999999876532 22 3666 458899999999976543
No 204
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.70 E-value=4.9e-07 Score=102.34 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. +++++.++.++++..+++.+. +.+.+ .+| ...++||.||.|+|..+.
T Consensus 125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~-~~g-~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVET-PDG-PYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEEC-CCC-cEEEEeCEEEECCCCCcH
Confidence 35677888888775 699999999999988766543 33222 344 346899999999998764
No 205
>PLN02785 Protein HOTHEAD
Probab=98.70 E-value=8.9e-08 Score=108.04 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=42.5
Q ss_pred HHHHHhCCcEEEEeEEEEEEEEeC----CEEEEEEEEEcCCCcEEEE-----EcCeEEEcCCcccc
Q psy15089 202 YGQSLRYDCNYFVEYFALDLIIEN----GECKGVIALCLEDGSIHRF-----NANNTVLATGGYGR 258 (661)
Q Consensus 202 ~~~a~~~gv~i~~~~~v~~l~~~~----g~v~Gv~~~~~~~G~~~~i-----~Ak~VIlAtGg~~~ 258 (661)
...+.+.+++++.++.|++|+.++ ++++||.+.+ .+|..+.+ .++.||||+|+++.
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE-CCCceEEEEeecccCceEEecccccCC
Confidence 344455689999999999999975 3899999876 45654332 24789999999774
No 206
>KOG2820|consensus
Probab=98.69 E-value=1.8e-07 Score=93.86 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEE--eCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCC
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLII--ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSC 263 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~--~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~ 263 (661)
..-++.|...+++.|+.++.+..|+.+.. +++..++|.+ .+|.. +.||.+|+++|.|-..+.++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~T---t~gs~--Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQT---TDGSI--YHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEe---ccCCe--eecceEEEEecHHHHhhcCc
Confidence 45678888899999999999988777654 3466566654 45654 89999999999988777664
No 207
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.69 E-value=7.7e-07 Score=99.41 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+.++++|++|+.++.|.++..+++++.||.+ .+|+ .+.|+.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~---~~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKL---ADGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEe---CCCC--EEEcCEEEECCChHH
Confidence 578899999999999999999999999998888888875 4565 478999999998654
No 208
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.69 E-value=1.5e-07 Score=101.78 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+++.+.|++++ ...++++..+++....+.. .+|+ .++|+.||.|+|..+
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~---~~g~--~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYC---AGGQ--RIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEe---CCCC--EEEeCEEEECCCCch
Confidence 5788889999888899886 5578887766343333332 4553 489999999999765
No 209
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.68 E-value=8.6e-07 Score=97.63 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..|.+.|.+|+++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 37999999999999999999999999999875
No 210
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.67 E-value=2.5e-07 Score=101.13 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=29.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..+|||||||.||+.+|..|.+.+.+|+||++.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPR 42 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCC
Confidence 368999999999999999998777899999975
No 211
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.67 E-value=3.1e-07 Score=99.99 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+++.+. |++++.++.++++..+++.+. +.. .+|+ .++|+.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTL---DNGQ--ALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEE---CCCC--EEEeCEEEEeCCCCCh
Confidence 35667888888765 799999999999987765432 332 5665 4899999999997663
No 212
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.66 E-value=1.9e-06 Score=92.62 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
...+.+.|.+++. .+..++.+..|+++..+++. +.+. ..+|+ .++|+.||-|+|.
T Consensus 86 ~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~---~~v~-~~~g~--~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 86 RADFYEFLLERAA-AGGVIRLNARVTSIEETGDG---VLVV-LADGR--TIRARVVVDARGP 140 (374)
T ss_pred HHHHHHHHHHHhh-hCCeEEEccEEEEEEecCce---EEEE-ECCCC--EEEeeEEEECCCc
Confidence 3578888888888 55566788899998876652 2222 25666 5999999999993
No 213
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.66 E-value=1.1e-07 Score=111.60 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHC----CCcEEEEEecC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE----GFKTAVITKLF 91 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~----G~~V~liek~~ 91 (661)
-.|||||+|+||+.+|..|.+. +++|+||++.+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~ 40 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP 40 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC
Confidence 3799999999999999999764 47899999874
No 214
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.65 E-value=2e-07 Score=99.40 Aligned_cols=36 Identities=36% Similarity=0.407 Sum_probs=32.7
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
...+|+|||+|+||+.||..|++.|.+|+++|+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346999999999999999999999999999999743
No 215
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.65 E-value=3.8e-07 Score=98.92 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 196 SLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 196 ~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+.+.|.+.+.+. |++++.++.++++..+++.+. +.. .+|. .+.|+.||.|+|..+.
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTL---DDGE--TLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEE---CCCC--EEEeCEEEEecCCChh
Confidence 5666777777664 799999999999987666543 332 4554 4899999999997663
No 216
>PRK07236 hypothetical protein; Provisional
Probab=98.64 E-value=6e-07 Score=97.09 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=32.3
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
..||+|||||++|+++|+.|++.|.+|+|+||..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4799999999999999999999999999999974
No 217
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.64 E-value=7.1e-07 Score=99.14 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..|++.|.+.+++.|++|+++++|.+|+.++|+.+++.. .+| ..+.||.||.+..-
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~---~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRT---SDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEec---ccc--ceeccceeEecCch
Confidence 589999999999999999999999999999998444443 445 45889999888774
No 218
>KOG2403|consensus
Probab=98.63 E-value=3.7e-07 Score=96.99 Aligned_cols=257 Identities=7% Similarity=-0.219 Sum_probs=160.0
Q ss_pred EEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCCCCCCCCCCChHHHHHHHcCCccCCCccccc
Q psy15089 213 FVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292 (661)
Q Consensus 213 ~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~~~~~~~~tGdG~~~a~~aGa~l~~~ef~q~ 292 (661)
.....+.+......++.+.++.....|..+...+++-+.+++|.+..+......+..+++++.+--..|+..
T Consensus 228 ~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvqfhpt~i~g~Gc-------- 299 (642)
T KOG2403|consen 228 VIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQFHPTGIYGAGC-------- 299 (642)
T ss_pred EEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceeeeeeecccccce--------
Confidence 333445555566677877777666778888888899998999988776665555556666555544444433
Q ss_pred ccccccCCCceecccccCCCcEEEcCCCCccccccccccccccchhHhhhhHHHHHHhcCCCCCCCCcEEEeCCCCChHH
Q psy15089 293 HPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPED 372 (661)
Q Consensus 293 ~p~~~~~~g~l~~e~~~~~g~~lvn~~G~rf~~~~~p~~~~l~~rd~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~ 372 (661)
+...+.....+++.......+..+++++.++.+....++....+...+...+..+++..+...+.+.......+.-
T Consensus 300 ----liteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~h~p~e~~~~~~p 375 (642)
T KOG2403|consen 300 ----LITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLSHLPPEPLKERLP 375 (642)
T ss_pred ----eeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCCccchhhccCChhhhcccCC
Confidence 1112222222333345566777788888877665534444444444444444444443333322322111111111
Q ss_pred HHhHhhhHHHHHHHHcCCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchh
Q psy15089 373 LHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGAN 452 (661)
Q Consensus 373 l~~~~~~~~~~~~~~~gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~ 452 (661)
.....+.+...+....+.+|...++++.++.++++++.++....++ ..|+..-.-.++.+||+..+++..++++...-+
T Consensus 376 ~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~-g~d~vvpGL~a~GEaac~svHGANRLgaNSLLd 454 (642)
T KOG2403|consen 376 GISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREV-GQDQVVPGLYACGEAACASVHGANRLGANSLLD 454 (642)
T ss_pred CcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccc-cccccccceeehhHHHHHhhhhhhhhhhhhhhH
Confidence 1122234444444446778888889999999999998887766665 455555577999999999998888876666678
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCccc
Q psy15089 453 SLLDLVVFGRACAKTIAEENKPGAPIKPFA 482 (661)
Q Consensus 453 ~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~ 482 (661)
.+..+-+++...++....-.+.....++..
T Consensus 455 lvvfgraca~~ia~~~~pg~~~~~~~~~~g 484 (642)
T KOG2403|consen 455 LVVFGRACALSIAEELRPGDKVPPLASNAG 484 (642)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 999999999999999887765544333333
No 219
>PRK06996 hypothetical protein; Provisional
Probab=98.63 E-value=4.3e-07 Score=98.64 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCC-cEEEEEcCeEEEcCCcc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDG-SIHRFNANNTVLATGGY 256 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G-~~~~i~Ak~VIlAtGg~ 256 (661)
..+.+.|.+.+.+.|++++.++.++++..++..+. +. ..+| ....++|+.||.|+|+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~---v~-~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVT---LA-LGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEE---EE-ECCCCcceEEeeeEEEECCCCC
Confidence 47888999999999999999999999866554432 22 1322 12469999999999963
No 220
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.63 E-value=5.1e-07 Score=99.25 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCC---cEEEEeEEEEEEEEe----CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYD---CNYFVEYFALDLIIE----NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g---v~i~~~~~v~~l~~~----~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+.+.+.+ ++++.+++++++..+ ++.-.++.+. ..+|+ .++|+.||.|.|..+..
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~-~~~g~--~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHIT-LSDGQ--VLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEE-EcCCC--EEEeeEEEEecCCCChh
Confidence 467788888887764 999999999999753 1111123222 25665 49999999999987743
No 221
>PRK07588 hypothetical protein; Provisional
Probab=98.61 E-value=7.3e-07 Score=96.62 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+.+ ..++++++++.|+++..+++.+. +. ..+|+. +.|+.||.|+|..+..
T Consensus 103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~-v~---~~~g~~--~~~d~vIgADG~~S~v 160 (391)
T PRK07588 103 GDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVR-VT---FERGTP--RDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEE-EE---ECCCCE--EEeCEEEECCCCCccc
Confidence 45666776654 34799999999999988776543 22 256754 6899999999987644
No 222
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.60 E-value=9.2e-08 Score=103.08 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=28.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHC--CCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~ 90 (661)
.||||||||+||+.||..+.+. ..+|+||++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence 4899999999999999999875 4579999986
No 223
>KOG1336|consensus
Probab=98.59 E-value=7.3e-08 Score=101.39 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCCCCCCCeeeeccccccccCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccch-hhhhhHHHHHHHHHHH
Q psy15089 389 GVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGA-NSLLDLVVFGRACAKT 467 (661)
Q Consensus 389 gid~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg-~~l~~a~v~G~~Ag~~ 467 (661)
|+-|.....+. ....-..|+|+||..+| |++||+||+||++...+|+.+.... --...|..+|+-|+.+
T Consensus 310 G~~p~t~~~~~-g~~~~~~G~i~V~~~f~---------t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~a 379 (478)
T KOG1336|consen 310 GIKPNTSFLEK-GILLDSKGGIKVDEFFQ---------TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKA 379 (478)
T ss_pred ccccccccccc-cceecccCCEeehhcee---------eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhh
Confidence 44444444333 22223457888887776 8999999999999888888776543 3344566677766655
Q ss_pred HH
Q psy15089 468 IA 469 (661)
Q Consensus 468 aa 469 (661)
+.
T Consensus 380 i~ 381 (478)
T KOG1336|consen 380 IK 381 (478)
T ss_pred hh
Confidence 43
No 224
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.59 E-value=7.5e-07 Score=98.80 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=45.0
Q ss_pred hCCcEEEEeEEEEEEEEeC---CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 207 RYDCNYFVEYFALDLIIEN---GECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 207 ~~gv~i~~~~~v~~l~~~~---g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+++++.++.|++|+.++ ++|.||.+.|..+|+...++||.||||+|+...
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 3359999999999999874 479999999876788889999999999999764
No 225
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.59 E-value=8.5e-07 Score=95.10 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=27.1
Q ss_pred cEEEECCcHHHHHHHHHhHHC---CCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAE---GFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~---G~~V~liek~ 90 (661)
.|||||||+||+.+|.++.++ +.+|+|||+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~ 34 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPS 34 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCC
Confidence 489999999999999999643 6789999976
No 226
>PTZ00367 squalene epoxidase; Provisional
Probab=98.57 E-value=1.2e-06 Score=98.38 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=32.7
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
.++||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999863
No 227
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.56 E-value=4.7e-07 Score=102.67 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=32.1
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
.-+|+|||+|++||+||..|++.|++|+|+|+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45899999999999999999999999999998753
No 228
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.56 E-value=1.3e-06 Score=100.43 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=33.1
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~ 93 (661)
..+|+|||+|+||++||..|++.|++|+|+|+....
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 578999999999999999999999999999997643
No 229
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.55 E-value=4.3e-06 Score=93.47 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..|.+.|.+.+++.|++|+.++.|++|..+++++.|+...+..+|+...+.||.||+++-.
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 5799999999999999999999999999998888888875422333346899999999885
No 230
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.53 E-value=1.5e-06 Score=99.49 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCC--cEEEEeEEEEEEEEeCC--EEEEEEEEEc---CCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRYD--CNYFVEYFALDLIIENG--ECKGVIALCL---EDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~g--v~i~~~~~v~~l~~~~g--~v~Gv~~~~~---~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+.+.+.+ +++..++.++++..++. ..+-+.+.+. .+|+...++||.||-|.|+.|..
T Consensus 141 ~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 141 ARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 357778888887776 57788899999987642 2223444432 15655689999999999987753
No 231
>PRK07208 hypothetical protein; Provisional
Probab=98.52 E-value=3.3e-06 Score=94.08 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
..+.+.|.+.+++.|++|+.++.|++|..++++++.++..+..+|+...+.||.||.|+-..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 46888999989889999999999999999876543333333245665568999999998853
No 232
>KOG2853|consensus
Probab=98.51 E-value=1.3e-06 Score=87.63 Aligned_cols=57 Identities=32% Similarity=0.500 Sum_probs=47.1
Q ss_pred CcccccccEEEECCcHHHHHHHHHhHHC----CCcEEEEEecCC-CCCCcccccCceEEccC
Q psy15089 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAE----GFKTAVITKLFP-TRSHTVAAQGGINAALG 109 (661)
Q Consensus 53 ~~~~~~~DVlVVGgG~AGl~AA~~aa~~----G~~V~liek~~~-~~~~s~~a~Gg~~~~~~ 109 (661)
+.....+||||||||..|.+.|+.|++. |++|+|+|+... ..+.|..+.||++..++
T Consensus 81 ~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 81 EVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred cccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 3455689999999999999999999864 799999999764 45667778899997665
No 233
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.51 E-value=2.3e-06 Score=92.98 Aligned_cols=62 Identities=6% Similarity=-0.048 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
..+.+.|.+.+.+. ++++++++.++++..+++.+. +...+..++ ..+.||.||.|.|..|..
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~--~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSV--ETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCC--cEEecCEEEECCCccHhH
Confidence 47888888888664 799999999999987666543 333322223 248999999999988754
No 234
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.50 E-value=4.5e-07 Score=106.30 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 205 SLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 205 a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+++.|++++.++.|+.+..+...|. ..+|+ .+.+|.+|||||+..
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~k~V~------~~~g~--~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQKQVI------TDAGR--TLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCCCEEE------ECCCc--EeeCCEEEECCCCCc
Confidence 4567999999999999877655432 14554 488999999999764
No 235
>PRK05868 hypothetical protein; Validated
Probab=98.49 E-value=2.5e-06 Score=91.68 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
||+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 899999999999999999999999999999754
No 236
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.48 E-value=2.5e-06 Score=90.32 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+.+. |++++++++|++|...++.-.-+.+.|..+|+...++|+.|++.+||.+-
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 47788888888877 89999999999999865433346667778888899999999999998763
No 237
>PRK06753 hypothetical protein; Provisional
Probab=98.47 E-value=2.8e-06 Score=91.38 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
||+|||||+||+++|+.|+++|++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999854
No 238
>KOG2311|consensus
Probab=98.44 E-value=8.6e-07 Score=92.52 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=32.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
..|||||||||-||+-||..+++.|.+++|+....
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 35999999999999999999999999999999753
No 239
>KOG2844|consensus
Probab=98.43 E-value=2.4e-06 Score=92.74 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..++.+|...|.+.|+.|++++.|++|....+++.||.+ .-|. |++..||.|+|-|++
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT---~~G~---iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVET---PHGS---IETECVVNAAGVWAR 244 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceec---cCcc---eecceEEechhHHHH
Confidence 678899999999999999999999999998877778765 4454 899999999998764
No 240
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.40 E-value=7e-06 Score=92.03 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..+.+.|.+.+++.|++|+.++.|+++..++++++||.. .+|+ .+.|+.||+|++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~---~~g~--~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHL---ADGE--RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEE---CCCC--EEECCEEEECCcH
Confidence 578899999999999999999999999998888888765 4565 3789999999884
No 241
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.40 E-value=9.1e-06 Score=92.07 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=33.4
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
....+|+|||||+|||++|+.|++.|++|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999964
No 242
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.38 E-value=5.6e-06 Score=90.66 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=34.3
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCc-EEEEEecCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFK-TAVITKLFPT 93 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~~~~ 93 (661)
...+||+|||||++|+++|++|.++|.. ++|+||....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 3468999999999999999999999998 9999998543
No 243
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.32 E-value=5.1e-06 Score=91.33 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
..+.+.|.+.+++.||+++.++ |+++..+ +|.|.++.. .+|+ .|.||.||-|||-.+
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~---~~g~--~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRL---DDGR--TIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEE---TTSE--EEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEE---CCCC--EEEEeEEEECCCccc
Confidence 5788889999999999998875 7777665 577877765 5565 589999999999554
No 244
>KOG2960|consensus
Probab=98.31 E-value=1.8e-06 Score=80.98 Aligned_cols=139 Identities=26% Similarity=0.345 Sum_probs=83.9
Q ss_pred cccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHH
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDA 135 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~ 135 (661)
+.||+|||+|.|||+||+..+++ .++|.+||..-.++++++. ||. .|..++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL--GGQ--------------LFSAMv----------- 128 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL--GGQ--------------LFSAMV----------- 128 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc--cch--------------hhhhhh-----------
Confidence 57999999999999999999865 6899999987555554331 221 111110
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHH-HHHHhCCcEEEE
Q psy15089 136 IHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLY-GQSLRYDCNYFV 214 (661)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~-~~a~~~gv~i~~ 214 (661)
.+ ...--+|.+.|+|++...+ +... ....-+..... +.+..-+++++.
T Consensus 129 ----vR--KPAhLFL~EigvpYedegd--YVVV-----------------------KHAALFtSTvmsk~LalPNVKLFN 177 (328)
T KOG2960|consen 129 ----VR--KPAHLFLQEIGVPYEDEGD--YVVV-----------------------KHAALFTSTVMSKVLALPNVKLFN 177 (328)
T ss_pred ----hc--ChHHHHHHHhCCCcccCCC--EEEE-----------------------eeHHHHHHHHHHHHhcCCcceeec
Confidence 00 0111356778999874432 2110 01122333333 333445899999
Q ss_pred eEEEEEEEEeC---C--EEEEEEEE----EcCCC-----cEEEEEcCeEEEcCC
Q psy15089 215 EYFALDLIIEN---G--ECKGVIAL----CLEDG-----SIHRFNANNTVLATG 254 (661)
Q Consensus 215 ~~~v~~l~~~~---g--~v~Gv~~~----~~~~G-----~~~~i~Ak~VIlAtG 254 (661)
-+.+.+|++.. | +|.||+.. ....| ..-.+.|+.||-+||
T Consensus 178 AtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 178 ATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred hhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 99999999863 2 67787642 11222 123688888888888
No 245
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.31 E-value=1.3e-05 Score=87.39 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
.+|.+.|.+.+...|++++.++.|.+|..++ ++++|+.. .+|+. ++|+.||....
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~---~~Ge~--i~a~~VV~~~s 287 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKS---EGGEV--AKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEE---CCCcE--EECCEEEECcc
Confidence 4788999999999999999999999999875 68877764 56754 88999998554
No 246
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.29 E-value=8e-06 Score=91.77 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
...++..+.+.+.++|++++.++.|+++..+++++.|+.+.+..+|+...|.|+.||+|+|.++
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 4678889999999999999999999999998999999998776677777899999999999775
No 247
>PRK07233 hypothetical protein; Provisional
Probab=98.29 E-value=9.9e-06 Score=88.94 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..+.+.|.+.+++.|++|+.++.|+++..+++++.++. .+++ .+.|+.||+|+..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~----~~~~--~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE----VDGE--EEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEE----eCCc--eEECCEEEECCCH
Confidence 46888999999889999999999999998877765544 2343 4889999999985
No 248
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.28 E-value=7.9e-06 Score=91.76 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCC-cEEEEEcCeEEEcCCcccc
Q psy15089 205 SLRYDCNYFVEYFALDLIIENGECKGVIALCLEDG-SIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 205 a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G-~~~~i~Ak~VIlAtGg~~~ 258 (661)
.+..++++..++.|+.|+.+.++++|+.+.....+ ....+.++.||||+|++..
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 34457999999999999999999999988753333 3556678999999999874
No 249
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.27 E-value=9.9e-06 Score=88.47 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
..+.+.|.+.+. ++.+..++.|+++..+++.+. +.. .+|+ .+.|+.||.|+|..+.
T Consensus 105 ~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 105 ADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQ-VLF---TDGT--EYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEE-EEE---cCCC--EEEeeEEEECCCccHH
Confidence 467777776553 356788999999987665432 322 4565 4889999999998875
No 250
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.26 E-value=3.3e-05 Score=85.47 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEE-eCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..+.+.|.+.+++.|++|..++.|++|.. ++++++|+.+.+...++...+.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 56788888888888999999999999986 45678888775422222335899999999974
No 251
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.20 E-value=1.4e-05 Score=74.54 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred EEECCcHHHHHHHHHhHHC-----CCcEEEEEecCC
Q psy15089 62 VVVGAGGAGLRAAFGLVAE-----GFKTAVITKLFP 92 (661)
Q Consensus 62 lVVGgG~AGl~AA~~aa~~-----G~~V~liek~~~ 92 (661)
+|||+|++|++++.+|.+. ..+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999987 467999999644
No 252
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.15 E-value=0.00011 Score=81.38 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
-.|+|||||..|+-+|..+.+.|. +|+||++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~ 315 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR 315 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence 479999999999999999999996 69999875
No 253
>KOG2852|consensus
Probab=98.14 E-value=1.4e-05 Score=78.64 Aligned_cols=176 Identities=13% Similarity=0.161 Sum_probs=96.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCC------CcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEG------FKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGD 132 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G------~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~ 132 (661)
..|+|||||+.|+++|+.|++.+ ..++|+|+....++.|..+.|-..-+ |+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~w-----------------------c~ 67 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKW-----------------------CQ 67 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhh-----------------------hC
Confidence 68999999999999999999987 78999999877776666554322211 11
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHCCCCc------ccC-CCCcccccccCCcccccCCCCcccee--e----eccCC
Q psy15089 133 QDAIHYMTREA-------PKAVIELENYGMPF------SRT-TDGKIYQRAFGGQSLKYGKGGQAHRC--C----AVADR 192 (661)
Q Consensus 133 ~~~~~~~~~~~-------~~~i~~l~~~Gv~f------~~~-~~g~~~~~~~gg~~~~~~~g~~~~r~--~----~~~~~ 192 (661)
+..+..++.-+ .+.++-..+||+.- ..+ ++-...... .| .+|-.+...... . ..++.
T Consensus 68 ~s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~p-eg--ldWi~~e~v~~~ssiG~t~ttaqv 144 (380)
T KOG2852|consen 68 PSIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWENTNPAKVP-EG--LDWIQRERVQKCSSIGSTNTTAQV 144 (380)
T ss_pred CcccchhhHHHHHHHHHHHHhhcCcccccceeeeEEEEEeecccCCcccCC-cc--hhhhhhHHhhhheeccCCCcccee
Confidence 11111122212 22222222344320 000 000000000 00 111100000000 0 01122
Q ss_pred cHHHHHHHHHHHHHhCC-cEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccCCC
Q psy15089 193 TGHSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFS 262 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~ 262 (661)
....+.+.+++.+++.| |++..+. |.++-.+.+++.++.... ..+......+..+|+|.|-|...+.+
T Consensus 145 hP~lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk~r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp 213 (380)
T KOG2852|consen 145 HPYLFCHFILSEAEKRGGVKLVFGK-VKEVSDEKHRINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLP 213 (380)
T ss_pred CHHHHHHHHHHHHHhhcCeEEEEee-eEEeecccccccccchhh-hcCceEEeeeeEEEEecCCCchhhcc
Confidence 34678899999998875 8887775 667665567777765432 23445567788999999988766554
No 254
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.11 E-value=3.4e-06 Score=66.58 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=29.8
Q ss_pred EECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCC
Q psy15089 63 VVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSH 96 (661)
Q Consensus 63 VVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~ 96 (661)
|||||++||+||+.|++.|.+|+|+||....++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999998765543
No 255
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.10 E-value=1.9e-05 Score=87.13 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=36.1
Q ss_pred HHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 203 GQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 203 ~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+.+++.|++++.++.|+++..++..+ .+.+..+|+...+.+|.+|+|||+..
T Consensus 64 ~~~~~~gv~~~~~~~V~~id~~~~~v---~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 64 EEFIKSGIDVKTEHEVVKVDAKNKTI---TVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHHHCCCeEEecCEEEEEECCCCEE---EEEECCCCCEEEecCCEEEECCCCCC
Confidence 34456799999899999987766543 33332345554455999999999754
No 256
>KOG1399|consensus
Probab=98.08 E-value=3.4e-05 Score=83.63 Aligned_cols=144 Identities=24% Similarity=0.307 Sum_probs=82.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHH
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIH 137 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~ 137 (661)
.-+|+|||+|+|||++|..|.+.|++|+|+||....+ |.-...... +....-+++.++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG--------GlW~y~~~~--~~~~ss~Y~~l~------------ 63 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG--------GLWKYTENV--EVVHSSVYKSLR------------ 63 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc--------ceEeecCcc--cccccchhhhhh------------
Confidence 4699999999999999999999999999999985433 332221110 000000111111
Q ss_pred HHHHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCc--EEEEe
Q psy15089 138 YMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDC--NYFVE 215 (661)
Q Consensus 138 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv--~i~~~ 215 (661)
.+.+.. .+.-..+||.... .+.+ .+-.++++.|...|+..++ .|.++
T Consensus 64 ---tn~pKe--~~~~~dfpf~~~~-----~~~~---------------------p~~~e~~~YL~~yA~~F~l~~~i~f~ 112 (448)
T KOG1399|consen 64 ---TNLPKE--MMGYSDFPFPERD-----PRYF---------------------PSHREVLEYLRDYAKHFDLLKMINFN 112 (448)
T ss_pred ---ccCChh--hhcCCCCCCcccC-----cccC---------------------CCHHHHHHHHHHHHHhcChhhheEec
Confidence 000000 0001233443220 0000 1224888999888888775 57777
Q ss_pred EEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 216 YFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 216 ~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
+.+..+...+ |+-. |...+ ..+.....-+|.||+|||-+
T Consensus 113 ~~v~~v~~~~~gkW~-V~~~~-~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 113 TEVVRVDSIDKGKWR-VTTKD-NGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred ccEEEEeeccCCcee-EEEec-CCcceeEEEeeEEEEcccCc
Confidence 8888887766 5433 44443 22223455679999999966
No 257
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.05 E-value=0.00025 Score=75.53 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=43.8
Q ss_pred CcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 409 Gi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
|.++|..|+++..++.+-...|++||+|||+... +. ++--..-..|.-.|..+++++....+.
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~-~~--~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI-DP--RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCC-CC--CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 4677777777776666778899999999998432 22 221223345677888899998887754
No 258
>KOG2614|consensus
Probab=98.05 E-value=4.9e-05 Score=79.20 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=34.8
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSH 96 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~ 96 (661)
+-+|+|||||++|+++|+.+++.|.+|+|+|+....++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 358999999999999999999999999999997665553
No 259
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.05 E-value=0.00011 Score=81.52 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC---C--EEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN---G--ECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~---g--~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
+..+.+.|.+.+++.|++|+.++.|++|..++ + +++|+.+.+ .++ ...+.||+||+|+...
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~-~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEG-KKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCc-ceEEECCEEEECCChH
Confidence 44567778888888999999999999998864 2 377776532 121 1348899999999954
No 260
>PLN02612 phytoene desaturase
Probab=98.04 E-value=0.00017 Score=81.64 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..+.+.|.+.+++.|++|+.++.|++|..+ ++.++++.+ .+|+ .+.||+||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~---~~G~--~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLL---TNGS--VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEE---CCCc--EEECCEEEECCCH
Confidence 467888888888899999999999999885 566666654 4565 4889999999864
No 261
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.01 E-value=5e-05 Score=81.43 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPT 93 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~ 93 (661)
||+|||||+||+++|++|++. |++|+|+|+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 899999999999999999987 9999999997543
No 262
>KOG1238|consensus
Probab=98.00 E-value=0.00019 Score=79.17 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCcEEEEeEEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEc-CeEEEcCCcccc
Q psy15089 208 YDCNYFVEYFALDLIIE--NGECKGVIALCLEDGSIHRFNA-NNTVLATGGYGR 258 (661)
Q Consensus 208 ~gv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A-k~VIlAtGg~~~ 258 (661)
.+..+...+.|+.++.| +.+..|+.... +.|+.+.++| |-|||+.|.++.
T Consensus 267 ~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~S 319 (623)
T KOG1238|consen 267 PNLHISRNAAVTRVLIDPAGKRAKGVEFVR-DGGKEHTVKARKEVILSAGAINS 319 (623)
T ss_pred ccccccccceEEEEEEcCCCceEEEEEEEe-cCceeeeecccceEEEeccccCC
Confidence 46778888899999998 56888988763 3378888888 679999998764
No 263
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.98 E-value=2.4e-05 Score=91.70 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=30.7
Q ss_pred cEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFP 92 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~ 92 (661)
+|+|||||+|||+||+.|++. |++|+|+||...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999753
No 264
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.98 E-value=7e-05 Score=83.66 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHHhCCc--EEEEeEEEEEEEEeCC-EEEEE-EEEEcCCCcEEEEEcCeEEEcCCcccccCCC
Q psy15089 193 TGHSLLHTLYGQSLRYDC--NYFVEYFALDLIIENG-ECKGV-IALCLEDGSIHRFNANNTVLATGGYGRAYFS 262 (661)
Q Consensus 193 ~g~~l~~~L~~~a~~~gv--~i~~~~~v~~l~~~~g-~v~Gv-~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~~~ 262 (661)
+..++.+.|...++..++ .|.+++.|+++...++ ...|- .+....+|+...-..|+||+|||.++..+.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 346889999999988775 5888999999987532 22222 1222345655555579999999987755543
No 265
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.92 E-value=4.2e-05 Score=80.75 Aligned_cols=61 Identities=21% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeEEEEEEEEeCC---EEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIENG---ECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 196 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g---~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
++.+.+.-.+.+..-.+.++.+|++|..+++ ...-|.+.+ .+|+...+.|+.||||+|+..
T Consensus 96 ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 96 EFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp HHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE
T ss_pred HHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCC
Confidence 4444444445555555788899999987542 244455555 678788899999999999543
No 266
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.90 E-value=0.00022 Score=58.32 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=29.4
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
|+|||||..|+-.|..+++.|.+|+||++.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 7999999999999999999999999999873
No 267
>KOG4254|consensus
Probab=97.90 E-value=7.8e-05 Score=77.96 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 196 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
.+..++++-+++.|.+|+++..|.+++.|+|+++||.. .+|+. +++|.||--++-+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L---~dG~e--v~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRL---ADGTE--VRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEe---cCCcE--EEeeeeecCCchH
Confidence 67788899999999999999999999999999999986 67764 7888888766643
No 268
>PLN02487 zeta-carotene desaturase
Probab=97.88 E-value=0.00028 Score=79.31 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC---C--EEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 192 RTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN---G--ECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 192 ~~g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~---g--~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
..+..|.+.+.+.+++.|++|+.++.|.+|..++ + +++|+.+. ++++...+.||+||+|++-.
T Consensus 292 g~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~--~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 292 SPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVS--KATEKEIVKADAYVAACDVP 359 (569)
T ss_pred CchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEe--cCCCceEEECCEEEECCCHH
Confidence 3445688999999999999999999999999873 2 47888763 23333458899999999954
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.87 E-value=3e-05 Score=85.48 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.6
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
...||+|||||+||++||..|++.|++|+|+|+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45799999999999999999999999999999864
No 270
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.80 E-value=0.00025 Score=74.92 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccccC
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY 260 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~~ 260 (661)
...++..|.+.+.+.|++++.++.|+++..+++.+.++.. .+| .++|+.||+|+|.++..+
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~---~~g---~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVT---PSG---DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEc---CCC---EEECCEEEEcCChhhhhc
Confidence 3688999999999999999999999999988888877653 444 389999999999877544
No 271
>KOG2665|consensus
Probab=97.76 E-value=0.00013 Score=72.96 Aligned_cols=178 Identities=18% Similarity=0.176 Sum_probs=94.5
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCCCCC-cccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPTRSH-TVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQ 133 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~~~~-s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~ 133 (661)
.+||.||||||+.|++.|.++.-. +.+|.|+||.....-+ |..++|-+.+.. +..+.+....+. .--.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGI-YY~P~SLKAklC--------V~G~ 117 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGI-YYKPGSLKAKLC--------VEGR 117 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeee-eeCCcccchhhh--------hccH
Confidence 359999999999999999999866 8999999997654433 333344344333 223444321100 0011
Q ss_pred HHHHHHHHHH------------------HHHHHHHHH----CCCCcccCCCCcccccccCCcccccCCCCccceeeec--
Q psy15089 134 DAIHYMTREA------------------PKAVIELEN----YGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV-- 189 (661)
Q Consensus 134 ~~~~~~~~~~------------------~~~i~~l~~----~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-- 189 (661)
++...|+++- -..++.|.+ .|++=-+.-+|.-..+.+ +..|....
T Consensus 118 ~LlY~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~E-----------P~crgvkAl~ 186 (453)
T KOG2665|consen 118 ELLYEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEME-----------PYCRGVKALL 186 (453)
T ss_pred HHHHHHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcC-----------hhhhhhhhhc
Confidence 1222221111 112233333 233321111111111110 01111110
Q ss_pred cCCcH----HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEE--EEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 190 ADRTG----HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKG--VIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 190 ~~~~g----~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~G--v~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
...+| ..++..+.+.+...|.+++.+.++..+...+....+ +++ .+|+..+++.+.||-|+|-.+
T Consensus 187 sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv---~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 187 SPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVV---LNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred CCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEE---ecCccceeEEeEEEEeccccH
Confidence 01111 467777888888899999999999998765432111 222 345555799999999999544
No 272
>KOG0399|consensus
Probab=97.71 E-value=0.00018 Score=82.26 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=32.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
-..|.|||+|||||+||-.|-+.|+-|+|.|+...
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 35899999999999999999999999999999754
No 273
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.71 E-value=6.4e-05 Score=83.21 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=32.7
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
...+|+|||+|+||++||..|++.|++|+|+|+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 346999999999999999999999999999998743
No 274
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.69 E-value=0.00072 Score=72.98 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 194 GHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 194 g~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
...++..|.+.+++ |+++++++.|+++..+++.+ ++. ..+|+ .+.|+.||+|+|.++..
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~-~v~---t~~g~--~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGW-QLL---DANGE--VIAASVVVLANGAQAGQ 192 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeE-EEE---eCCCC--EEEcCEEEEcCCccccc
Confidence 36889999999988 99999999999998876652 333 24564 37899999999988754
No 275
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.65 E-value=5.1e-05 Score=80.84 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=33.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
+||+|||||+||+++|.+|++.|.+|+|+||....++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 6999999999999999999999999999999755444
No 276
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.64 E-value=5.6e-05 Score=74.14 Aligned_cols=35 Identities=37% Similarity=0.400 Sum_probs=32.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~ 93 (661)
.+|+|||+|+||++||..|+++|..|+|+||+.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 37999999999999999999999999999998543
No 277
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.64 E-value=5.2e-05 Score=79.87 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=35.7
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
+.+-++||||||+||+.||+.|++.|++|.|+||.+..+|
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 3456899999999999999999999999999999876554
No 278
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.64 E-value=0.00063 Score=75.67 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||.+|+-+|..+++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~ 212 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAA 212 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 47999999999999999999999999999986
No 279
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.64 E-value=0.00065 Score=75.31 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-+|+|||||.+|+.+|..+++.|.+|+++++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~ 202 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEML 202 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999986
No 280
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.57 E-value=0.00025 Score=78.90 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 204 QSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 204 ~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
-.+++||+++.+..|+.+..++..|+ ...|.. +..+.+|||||++...
T Consensus 68 wy~~~~i~L~~~~~v~~idr~~k~V~------t~~g~~--~~YDkLilATGS~pfi 115 (793)
T COG1251 68 WYEENGITLYTGEKVIQIDRANKVVT------TDAGRT--VSYDKLIIATGSYPFI 115 (793)
T ss_pred hHHHcCcEEEcCCeeEEeccCcceEE------ccCCcE--eecceeEEecCccccc
Confidence 35678999999999999988776543 256654 6779999999998754
No 281
>KOG0029|consensus
Probab=97.52 E-value=9.6e-05 Score=81.59 Aligned_cols=40 Identities=33% Similarity=0.355 Sum_probs=35.3
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
.+..+|+|||||+|||+||..|.+.|.+|+|+|.....||
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3457999999999999999999999999999998765544
No 282
>PLN02576 protoporphyrinogen oxidase
Probab=97.51 E-value=0.0001 Score=82.59 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=34.7
Q ss_pred ccccEEEECCcHHHHHHHHHhHHC-CCcEEEEEecCCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVITKLFPTRS 95 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~-G~~V~liek~~~~~~ 95 (661)
..+||+|||||++||+||++|+++ |.+|+|+|+....||
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 347999999999999999999999 999999999865544
No 283
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=0.0015 Score=72.49 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 199 HTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 199 ~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
..+.+.+++.||+++.++.++++..+++.+. +...+ .+|+...+.++.||+|+|
T Consensus 217 ~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-~~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 217 KEIAKQYKKLGVKILTGTKVESIDDNGSKVT-VTVSK-KDGKAQELEADKVLQAIG 270 (466)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEEeCCeEE-EEEEe-cCCCeEEEEeCEEEECcC
Confidence 3344556678999999999999976554432 33221 356656799999999999
No 284
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.50 E-value=0.00018 Score=78.17 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=30.4
Q ss_pred ccEEEECCcHHHHHHHHHh-HHCCCcEEEEEecCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGL-VAEGFKTAVITKLFPT 93 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~a-a~~G~~V~liek~~~~ 93 (661)
.-|+||||||||+.||.++ ++.|++|.|+||.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 5699999999999999976 4679999999998644
No 285
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.0017 Score=71.93 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+|+|+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~ 206 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL 206 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 47999999999999999999999999999975
No 286
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.0015 Score=72.42 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..+++.|.+|+++++.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~ 204 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEAL 204 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 36999999999999999999999999999986
No 287
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.002 Score=71.70 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 199 HTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 199 ~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
..+.+.+++.|++++.++.++++..+++.+. +...+ .+|+...+.++.||+|+|.
T Consensus 228 ~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~-~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 228 KEAAKAFTKQGLDIHLGVKIGEIKTGGKGVS-VAYTD-ADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHcCcEEEeCcEEEEEEEcCCEEE-EEEEe-CCCceeEEEcCEEEEccCC
Confidence 3344455678999999999999976655442 33333 3466567999999999993
No 288
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.43 E-value=0.0017 Score=71.94 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||.+|+-+|..+++.|.+|+|+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 202 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMA 202 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 37999999999999999999999999999976
No 289
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.42 E-value=0.00014 Score=80.25 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=32.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCC--CcEEEEEecCCCCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEG--FKTAVITKLFPTRS 95 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G--~~V~liek~~~~~~ 95 (661)
+|+|||||+|||+||+.|+++| ++|+|+|+....||
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 6999999999999999999988 89999999765554
No 290
>PLN02268 probable polyamine oxidase
Probab=97.42 E-value=0.00015 Score=79.86 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=34.1
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSH 96 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~ 96 (661)
.+|+|||||+|||+||..|.++|++|+|+|+....||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999998766554
No 291
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.00018 Score=72.30 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=37.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCccc
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVA 99 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~ 99 (661)
+|+||||+|.+|+..|..|++.|.+|+||||....||+..-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999999999998877776553
No 292
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.38 E-value=0.00018 Score=79.86 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHC----CCcEEEEEecCCCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE----GFKTAVITKLFPTRS 95 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~----G~~V~liek~~~~~~ 95 (661)
.||+|||||++||+||+.|+++ |.+|+|+|+....||
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 5899999999999999999999 999999999865544
No 293
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.37 E-value=0.0017 Score=72.96 Aligned_cols=47 Identities=6% Similarity=0.179 Sum_probs=39.3
Q ss_pred CCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 208 YDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 208 ~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
.||+++.++.++++..+++++.++.+.+..+|+...+.++.||+|+|
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G 447 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIG 447 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeC
Confidence 58999999999998777678888877665566666799999999999
No 294
>PRK06370 mercuric reductase; Validated
Probab=97.34 E-value=0.0027 Score=70.49 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=30.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..+++.|.+|+++++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 47999999999999999999999999999986
No 295
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.33 E-value=0.0015 Score=67.57 Aligned_cols=48 Identities=10% Similarity=0.222 Sum_probs=37.5
Q ss_pred HhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 206 LRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 206 ~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
++. |++++.++.++++..+ +++.++...+..+|+...+.+|.||+|+|
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGD-NKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred HhCCCeEEEeccEEEEEEcc-CcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 345 8999999999998754 46666766554567767899999999999
No 296
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.32 E-value=0.0025 Score=70.67 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=30.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999986
No 297
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.27 E-value=0.0028 Score=68.32 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..|++.|.+|+++++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~ 173 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA 173 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 36999999999999999999999999999975
No 298
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.27 E-value=0.0021 Score=72.24 Aligned_cols=47 Identities=9% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 208 YDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 208 ~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
.||+++.++.++++..+++++.++...+..+|+...+.++.|++|+|
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G 446 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIG 446 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeEC
Confidence 58999999999999877788888887776677777899999999999
No 299
>PRK10262 thioredoxin reductase; Provisional
Probab=97.25 E-value=0.0036 Score=65.86 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=39.1
Q ss_pred HHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcC-CCcEEEEEcCeEEEcCC
Q psy15089 202 YGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLE-DGSIHRFNANNTVLATG 254 (661)
Q Consensus 202 ~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~-~G~~~~i~Ak~VIlAtG 254 (661)
.+.+++.||+++.++.++++..+++.+.++...+.. +++...+.++.||+|+|
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G 245 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 245 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeC
Confidence 334556789999999999987655567777765432 23455799999999999
No 300
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0022 Score=68.62 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHC---CCcEEEEEecCCCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE---GFKTAVITKLFPTRS 95 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~---G~~V~liek~~~~~~ 95 (661)
++|.|||||..|++.|.+|.+. -.++.|+|+....+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 6899999999999999999985 123999999765443
No 301
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.24 E-value=0.0028 Score=68.80 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..|++.|.+|+||++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36999999999999999999999999999976
No 302
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00032 Score=74.31 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=36.4
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCc
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHT 97 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s 97 (661)
...+||||||+|.+||+||+.|.+.|++|+|+|.....++-+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 456899999999999999999999999999999876554433
No 303
>PLN02568 polyamine oxidase
Probab=97.22 E-value=0.00036 Score=78.32 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=34.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCC-----CcEEEEEecCCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEG-----FKTAVITKLFPTRS 95 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G-----~~V~liek~~~~~~ 95 (661)
...||+|||+|+|||+||..|++.| .+|+|+|+....+|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 3579999999999999999999887 89999999765554
No 304
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00036 Score=75.25 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=32.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
.|+|+|||+|||+||+.|+++|++|+|+|.+...||
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 589999999999999999999999999999876544
No 305
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.20 E-value=0.00049 Score=75.87 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=32.1
Q ss_pred cccEEEECCcHHHHHHHHHhHH--CCCcEEEEEecCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVA--EGFKTAVITKLFPT 93 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~--~G~~V~liek~~~~ 93 (661)
...|+||||||||++||..|++ .|++|+|+|+.+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 4689999999999999999987 79999999998643
No 306
>PRK12831 putative oxidoreductase; Provisional
Probab=97.20 E-value=0.004 Score=68.93 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..|.+.|.+|+|+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 47999999999999999999999999999875
No 307
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.19 E-value=0.0024 Score=70.28 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||.+|+.+|..+++.|.+|+|+++.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~ 189 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36999999999999999999999999999986
No 308
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.18 E-value=0.0034 Score=68.55 Aligned_cols=95 Identities=23% Similarity=0.199 Sum_probs=69.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHHHHHHH
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYM 139 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~~~~~~ 139 (661)
.++|||||..|+--|-..++.|.+|+|||+.... + +. .|
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i--------------L---p~-----------------~D------- 213 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI--------------L---PG-----------------ED------- 213 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC--------------C---Cc-----------------CC-------
Confidence 5999999999999999999999999999987311 0 00 01
Q ss_pred HHHHHHHHHHHHHCCCCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHHhCCcEEEEeEEEE
Q psy15089 140 TREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFAL 219 (661)
Q Consensus 140 ~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~~~gv~i~~~~~v~ 219 (661)
..+.+.+.+.+++.|++++.++.++
T Consensus 214 -------------------------------------------------------~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 214 -------------------------------------------------------PEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHhCCeEEEccceEE
Confidence 2444555556666789999999999
Q ss_pred EEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 220 ~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
.+...++. +-+.. .+|+...+.|+.|++|+|
T Consensus 239 ~~~~~~~~-v~v~~---~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 239 AVEKKDDG-VLVTL---EDGEGGTIEADAVLVAIG 269 (454)
T ss_pred EEEecCCe-EEEEE---ecCCCCEEEeeEEEEccC
Confidence 98876654 33333 344333688999999999
No 309
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.16 E-value=0.00041 Score=74.76 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=31.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
+||+|||||.||+.||+.|++.|.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 5899999999999999999999999999998643
No 310
>PRK06116 glutathione reductase; Validated
Probab=97.16 E-value=0.0044 Score=68.44 Aligned_cols=32 Identities=28% Similarity=0.167 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 47999999999999999999999999999976
No 311
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.15 E-value=0.0055 Score=67.96 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 46999999999999999999999999999986
No 312
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.13 E-value=0.0057 Score=67.52 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+||++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 47999999999999999999999999999976
No 313
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.08 E-value=0.0048 Score=68.07 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..+++.|.+|.++++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~ 181 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE 181 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC
Confidence 46999999999999999999999999999865
No 314
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.05 E-value=0.0073 Score=67.08 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+||++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~ 206 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF 206 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 37999999999999999999999999999976
No 315
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.05 E-value=0.006 Score=67.54 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
-.|+|||||..|+-+|..|.+.|. +|+++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 479999999999999999999998 79999874
No 316
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.05 E-value=0.00058 Score=75.74 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
..+.+.|.+.+.+ ++|..++.|+.|..+++.+ .+.. .+|+ .+.||.||+|+-
T Consensus 226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~-~v~~---~~g~--~~~ad~VI~a~p 277 (463)
T PRK12416 226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRY-EISF---ANHE--SIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEE-EEEE---CCCC--EEEeCEEEECCC
Confidence 3677788776643 6899999999999877664 2322 4555 378999999985
No 317
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.04 E-value=0.00065 Score=73.44 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCC--CcEEEEEecCCCC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEG--FKTAVITKLFPTR 94 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G--~~V~liek~~~~~ 94 (661)
-|+|||||++||+||++|++.+ +.|+|+|+....|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 4899999999999999999999 8999999975443
No 318
>PLN02676 polyamine oxidase
Probab=97.01 E-value=0.00071 Score=75.25 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=34.5
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFPTRSH 96 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~~~~~ 96 (661)
.+||+|||||++||+||.+|++.|. +|+|+|+....+|.
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGR 65 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCc
Confidence 5799999999999999999999998 59999998765553
No 319
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.01 E-value=0.0047 Score=67.00 Aligned_cols=33 Identities=42% Similarity=0.434 Sum_probs=31.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
.+|+|||+|++|+.+|..|++.|++|+++|+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence 699999999999999999999999999999874
No 320
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.97 E-value=0.027 Score=61.01 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEe---CCEEEEEEEEEcCCCcEEEEE--c-CeEEEcCCccc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIE---NGECKGVIALCLEDGSIHRFN--A-NNTVLATGGYG 257 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~---~g~v~Gv~~~~~~~G~~~~i~--A-k~VIlAtGg~~ 257 (661)
..++..|.+.++++||++.+++.|++|..+ +.+++..+... ++|+...|. . |.|++-.|+..
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEeCCCCEEEEECCccc
Confidence 478889999999999999999999999986 23443333332 566655553 3 67777777643
No 321
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.97 E-value=0.0073 Score=66.24 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||.+|+-+|..+++.|.+|+++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~ 169 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 37999999999999999999999999999976
No 322
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.92 E-value=0.011 Score=65.68 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||+|..|+-.|..+++.|.+|+++++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~ 209 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSR 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 6999999999999999999999999999975
No 323
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.92 E-value=0.01 Score=65.84 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||+|..|+-.|..+++.|.+|+++++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~ 201 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERG 201 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 47999999999999999999999999999976
No 324
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.91 E-value=0.011 Score=65.09 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||+|..|+-.|..+++.|.+|+++++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 198 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRG 198 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeC
Confidence 6999999999999999999999999999976
No 325
>PLN02529 lysine-specific histone demethylase 1
Probab=96.89 E-value=0.0012 Score=76.16 Aligned_cols=40 Identities=35% Similarity=0.409 Sum_probs=35.2
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
....||+|||+|+||++||..|++.|++|+|+|+....+|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 3467999999999999999999999999999999765444
No 326
>KOG2495|consensus
Probab=96.89 E-value=0.06 Score=56.75 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.7
Q ss_pred cccccccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 54 ~~~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.....-.|||+|+|-+|++..-.+-..-++|+||+-.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPR 87 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPR 87 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccc
Confidence 3445678999999999999998888878899999753
No 327
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.88 E-value=0.0067 Score=71.60 Aligned_cols=31 Identities=42% Similarity=0.601 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||||..|+-+|..|++.|.+|.||+..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~ 172 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA 172 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccC
Confidence 6999999999999999999999999999975
No 328
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.86 E-value=0.0014 Score=76.10 Aligned_cols=39 Identities=41% Similarity=0.463 Sum_probs=34.9
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
...+|+|||||++|++||+.|++.|.+|+|+|+....+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 457999999999999999999999999999999765544
No 329
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.85 E-value=0.012 Score=65.60 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 197 LLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 197 l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
+.+.+.+.+++.|++++.++.++++..+++....+.. .+|+ .+.++.||+|+|
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~---~~g~--~i~~D~vl~a~G 285 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF---ESGK--TLDVDVVMMAIG 285 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE---cCCC--EEEcCEEEEeeC
Confidence 3344555667789999999999998765433223332 3454 489999999999
No 330
>PLN02507 glutathione reductase
Probab=96.84 E-value=0.015 Score=64.92 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~ 235 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRK 235 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEec
Confidence 37999999999999999999999999999976
No 331
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.82 E-value=0.013 Score=64.50 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~ 190 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAA 190 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7999999999999999999999999999975
No 332
>PRK14694 putative mercuric reductase; Provisional
Probab=96.81 E-value=0.013 Score=65.07 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||+|..|+-.|..+++.|.+|+++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 37999999999999999999999999999853
No 333
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.80 E-value=0.0093 Score=70.60 Aligned_cols=31 Identities=42% Similarity=0.409 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.++|||||..|+-+|..|++.|.+|.||+..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~ 177 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFA 177 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999999999975
No 334
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.79 E-value=0.0092 Score=63.12 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=73.4
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC--cEEEEEecCCCCCCcccccCceEEccCCCCCCCHHHHHHHHHhccCCCCCHH
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF--KTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQD 134 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~--~V~liek~~~~~~~s~~a~Gg~~~~~~~~~~d~~~~~~~d~~~~g~~l~~~~ 134 (661)
....|+|||||..+.-.+..|.+.+. +|.++-+... +... .++. + ...+.+|+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~-----------~~~~-----d~s~---f------~ne~f~P~ 243 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG-----------FFPM-----DDSP---F------VNEIFSPE 243 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS------------EB---------C---C------HHGGGSHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc-----------cCCC-----cccc---c------hhhhcCch
Confidence 45789999999999999999999874 7999988631 1100 0100 0 00123455
Q ss_pred HHHHHHHHHHHHHHHH-HHCC-CCcccCCCCcccccccCCcccccCCCCccceeeeccCCcHHHHHHHHHHHHH--hCCc
Q psy15089 135 AIHYMTREAPKAVIEL-ENYG-MPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSL--RYDC 210 (661)
Q Consensus 135 ~~~~~~~~~~~~i~~l-~~~G-v~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~L~~~a~--~~gv 210 (661)
.+..+.....+.=..+ .+.. .. .++.+. ..-.+|-+.|+++-. +..+
T Consensus 244 ~v~~f~~l~~~~R~~~l~~~~~~n-------------y~~i~~----------------~~l~~iy~~lY~~~v~g~~~~ 294 (341)
T PF13434_consen 244 YVDYFYSLPDEERRELLREQRHTN-------------YGGIDP----------------DLLEAIYDRLYEQRVSGRGRL 294 (341)
T ss_dssp HHHHHHTS-HHHHHHHHHHTGGGT-------------SSEB-H----------------HHHHHHHHHHHHHHHHT---S
T ss_pred hhhhhhcCCHHHHHHHHHHhHhhc-------------CCCCCH----------------HHHHHHHHHHHHHHhcCCCCe
Confidence 5554443332222222 1110 00 011000 000233333433321 2248
Q ss_pred EEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 211 NYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 211 ~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
+++.+++|+++..++ |.+. +.+.+..+++...+.+|+||+|||
T Consensus 295 ~l~~~~~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 295 RLLPNTEVTSAEQDGDGGVR-LTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEETTEEEEEEEEES-SSEE-EEEEETTT--EEEEEESEEEE---
T ss_pred EEeCCCEEEEEEECCCCEEE-EEEEECCCCCeEEEecCEEEEcCC
Confidence 899999999998876 5554 555666788888999999999999
No 335
>PRK14727 putative mercuric reductase; Provisional
Probab=96.77 E-value=0.016 Score=64.65 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 36999999999999999999999999999864
No 336
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.69 E-value=0.019 Score=63.91 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.++|||||..|+-.|..+++.|.+|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999999999863
No 337
>PTZ00058 glutathione reductase; Provisional
Probab=96.68 E-value=0.021 Score=64.49 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~ 269 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARG 269 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence 46999999999999999999999999999986
No 338
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.64 E-value=0.019 Score=61.30 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=28.6
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCc-EEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFK-TAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~ 90 (661)
.|+|||+|..|+-+|..+.+.|.+ |+|+++.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 699999999999999999999997 9999875
No 339
>PRK13748 putative mercuric reductase; Provisional
Probab=96.63 E-value=0.017 Score=65.78 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+||++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 36999999999999999999999999999864
No 340
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.62 E-value=0.002 Score=75.37 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.1
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
....|+|||+||||++||..|++.|++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34689999999999999999999999999999864
No 341
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.58 E-value=0.0033 Score=68.65 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=31.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
-.|.|||||||||+||..|+++|+.|++.|+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 5899999999999999999999999999998743
No 342
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.55 E-value=0.024 Score=63.40 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999853
No 343
>PRK07846 mycothione reductase; Reviewed
Probab=96.55 E-value=0.027 Score=62.16 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=30.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 198 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS 198 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 47999999999999999999999999999986
No 344
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.50 E-value=0.021 Score=62.79 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecc
Confidence 6999999999999999999999999999976
No 345
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.44 E-value=0.031 Score=65.89 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCc-EEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFK-TAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~ 90 (661)
-.|+|||||..|+-+|..|.+.|.+ |+|+++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3799999999999999999999997 9999875
No 346
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.36 E-value=0.037 Score=66.33 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-+|..|.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 36999999999999999999999999999865
No 347
>PLN02546 glutathione reductase
Probab=96.30 E-value=0.044 Score=61.92 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=29.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~ 284 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ 284 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEec
Confidence 37999999999999999999999999999976
No 348
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.27 E-value=0.05 Score=62.51 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||||..|+-.|..+++.|.+|+||++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 7999999999999999999999999999986
No 349
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.27 E-value=0.032 Score=63.32 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence 36999999999999999999999999999976
No 350
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.24 E-value=0.051 Score=60.06 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||||..|+-.|..+++.|.+|++|++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~ 201 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS 201 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 47999999999999999999999999999975
No 351
>PLN03000 amine oxidase
Probab=96.21 E-value=0.006 Score=70.98 Aligned_cols=39 Identities=36% Similarity=0.422 Sum_probs=34.9
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSH 96 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~ 96 (661)
..||+|||+|++|+.||..|++.|++|+|+|+....+|.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 479999999999999999999999999999997655543
No 352
>PLN02976 amine oxidase
Probab=96.19 E-value=0.0058 Score=73.74 Aligned_cols=41 Identities=34% Similarity=0.403 Sum_probs=35.7
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSH 96 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~ 96 (661)
....||+|||+|++|+.||+.|++.|.+|+|+|+....+|.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 34589999999999999999999999999999997655543
No 353
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.13 E-value=0.046 Score=59.86 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=37.9
Q ss_pred cCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 408 GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
|+|.||...| .|++||+||+|||+.. .+. ........|.-.|..+|+++...+..
T Consensus 295 G~I~Vd~~l~--------~~~~~~IfAiGD~a~~--~~~--~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 295 GRISVDDHLR--------VKPIPNVFALGDCAAN--EER--PLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CcEEeCCCcc--------cCCCCCEEEEeccccC--CCC--CCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 6788887665 3689999999998732 211 11123345777899999999887743
No 354
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.11 E-value=0.023 Score=60.78 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 197 LLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 197 l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
+.+...+.++++||+++.++.|+++..+ |+.+ ++|+. .|.++.||-|+|-.+
T Consensus 211 l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~---~~g~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 211 LSKYAERALEKLGVEVLLGTPVTEVTPD-----GVTL---KDGEE-EIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHCCCEEEcCCceEEECCC-----cEEE---ccCCe-eEecCEEEEcCCCcC
Confidence 3334445567889999999999998543 2333 45543 699999999999544
No 355
>KOG1335|consensus
Probab=96.09 E-value=0.038 Score=57.30 Aligned_cols=53 Identities=4% Similarity=-0.030 Sum_probs=43.2
Q ss_pred HHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 203 GQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 203 ~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
.-+.++|+++..++.|+....+.+..+-+.+.+.++++...+.+|.+++|+|-
T Consensus 260 r~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 260 RVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 33456899999999999988865434457778889999999999999999994
No 356
>KOG1276|consensus
Probab=95.94 E-value=0.0083 Score=62.96 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcE--EEEEecCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKT--AVITKLFPTRS 95 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V--~liek~~~~~~ 95 (661)
-.+|+|||||++||+||++|++.+.+| +|+|+..-.+|
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 368999999999999999999998775 55898765444
No 357
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.92 E-value=0.075 Score=64.33 Aligned_cols=51 Identities=12% Similarity=0.341 Sum_probs=37.5
Q ss_pred HHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEc--------------CCCcEEEEEcCeEEEcCCc
Q psy15089 205 SLRYDCNYFVEYFALDLIIE-NGECKGVIALCL--------------EDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 205 a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~--------------~~G~~~~i~Ak~VIlAtGg 255 (661)
+++.||++++.+.++++..+ +|++.|+.+... .+|+...+.+|.||+|.|-
T Consensus 619 a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 619 AKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred HHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 45678888888888888764 578888865421 1345567999999999994
No 358
>KOG0685|consensus
Probab=95.85 E-value=0.011 Score=63.12 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=31.7
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFPTRS 95 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~~~~ 95 (661)
+.-|+|||+|+||++||.+|-++|. .|+|+|...-.||
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 4589999999999999999998765 6899998655443
No 359
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.85 E-value=0.0086 Score=61.17 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=33.8
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCCCc
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHT 97 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~~s 97 (661)
.-+|.|||+|++||+||+.|++. .+|+|+|.+...+|++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 35899999999999999999987 6899999987666654
No 360
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.73 E-value=0.0085 Score=65.73 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=32.8
Q ss_pred HhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 206 LRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 206 ~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
.+.|++++.++.|+.+..++..+. +.+..+++...+.+|+||+|||+..
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~---~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVV---VRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEE---EEECCCCCEEecCCCEEEECCCCCC
Confidence 567999988889999876665432 2221233332233999999999754
No 361
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.52 E-value=0.096 Score=63.56 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 204 QSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 204 ~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
.+++.||+++.++.++.+.. ++++.++.+.. .+|+...+.+|.|+++.|-.
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g-~~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEG-GKRVSGVAVAR-NGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred HHHHcCCEEEcCCeEEEEec-CCcEEEEEEEe-cCCceEEEECCEEEEcCCcC
Confidence 34567899999888888754 45666776543 24555679999999999954
No 362
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.14 Score=53.26 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 204 QSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 204 ~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
+++++ ++++++++.+.++.-++ +.++...+.+ |+...+..+.|.++.|
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~-~~~~~~~~~gvf~~iG 235 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVK-GEEKELPVDGVFIAIG 235 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecCc--cceEEEEecC-CceEEEEeceEEEecC
Confidence 33444 79999999999987665 7788887754 7777888999999999
No 363
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.39 E-value=0.17 Score=58.61 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
-.|+|||||..|+-+|..+.+.|. +|+|+.+.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 479999999999999999999997 59999865
No 364
>KOG1346|consensus
Probab=95.01 E-value=0.02 Score=59.64 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.6
Q ss_pred hCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcccc
Q psy15089 207 RYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258 (661)
Q Consensus 207 ~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~ 258 (661)
.-||-++.+..|++|..++..|+ +.+|.. |..+..+||||+...
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~------LnDG~~--I~YdkcLIATG~~Pk 312 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVI------LNDGTT--IGYDKCLIATGVRPK 312 (659)
T ss_pred cCceEEEeccceEEeecccCeEE------ecCCcE--eehhheeeecCcCcc
Confidence 44789999999999988777654 367764 888999999997654
No 365
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.17 Score=51.89 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=37.3
Q ss_pred CCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 208 YDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 208 ~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
.+++|+.+..-+++.-++.+|.|....|..+|+.+.+.=..|.+--|
T Consensus 403 ~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG 449 (520)
T COG3634 403 PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG 449 (520)
T ss_pred CCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe
Confidence 37999999999999888889999999998888876655455555444
No 366
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.87 E-value=0.26 Score=56.14 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=32.8
Q ss_pred CccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 426 ~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
.|++||+||+||++. + ...+..|+-.|+.||.++..++..
T Consensus 406 ~ts~~~Vfa~GD~~~-g--------~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 406 MTGRPGVFAGGDMVP-G--------PRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred cCCCCCEEeccCcCC-C--------chHHHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999862 1 245678899999999999999854
No 367
>KOG1336|consensus
Probab=94.80 E-value=0.21 Score=53.55 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 199 HTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 199 ~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
+.+.+..+++||+++.++.+..+... +|+++-|.. .+|+. +.|+.||+.+|.-
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l---~dg~~--l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL---KDGKT--LEADLVVVGIGIK 312 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe---ccCCE--eccCeEEEeeccc
Confidence 34445567789999999999999875 478776654 56654 8999999999964
No 368
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.78 E-value=0.26 Score=52.68 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=36.8
Q ss_pred cCcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 408 GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
|+|.||...| .+++|++||+|||+.. .... + ......|...|+++|+++...++.
T Consensus 258 g~i~vd~~l~--------~~~~~~Iya~GD~~~~--~~~~-~-~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 258 GFLRVDPTLQ--------SLSHPHVFAAGDCAVI--TDAP-R-PKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CeEEECCccc--------cCCCCCEEEeeeeeec--CCCC-C-CCchHHHHHhHHHHHHHHHHHhcC
Confidence 5677776554 1389999999998732 2111 1 122345788999999999887753
No 369
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.73 E-value=0.035 Score=60.17 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEEc
Q psy15089 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLA 252 (661)
Q Consensus 196 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~Ak~VIlA 252 (661)
+|-+.+...+.-.|..+..+..+.++..+ +|+++|+. .+|+ .++||.||..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~----s~ge--~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK----SEGE--VVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE----ETTE--EEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe----cCCE--EEEcCEEEEC
Confidence 78888887777789999999999999985 58888875 3565 4899999953
No 370
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.72 E-value=0.59 Score=49.34 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.2
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCC-CcEEEEEecCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEG-FKTAVITKLFP 92 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G-~~V~liek~~~ 92 (661)
...+|++.||-||+-|+.|+.+.+.+ .+++.+||.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 45689999999999999999999875 78999999753
No 371
>KOG1800|consensus
Probab=94.57 E-value=0.033 Score=57.72 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=30.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHC--CCcEEEEEecCCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE--GFKTAVITKLFPT 93 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~--G~~V~liek~~~~ 93 (661)
.-|+|||+||||+.+|..|-++ +++|.|+||.+.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4799999999999999999884 6899999998654
No 372
>KOG3855|consensus
Probab=94.39 E-value=0.066 Score=56.19 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=29.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHC----CCcEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAE----GFKTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~----G~~V~liek~~ 91 (661)
.|||||||||+.|++.|..+..+ -.||+|+|.+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 59999999999999888888754 46899999873
No 373
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.02 E-value=0.6 Score=56.01 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=28.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHC-CC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE-GF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~-G~-~V~liek~ 90 (661)
-.|+|||||..|+-+|..+.+. |. +|++|.+.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr 700 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 4799999999999999998876 86 79999875
No 374
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.059 Score=54.83 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=30.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~ 92 (661)
.-|.|||||.||.-||+.+++.|.+|.|.|-.+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4689999999999999999999999999996543
No 375
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.29 E-value=0.94 Score=54.26 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=27.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHC-C-CcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE-G-FKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~-G-~~V~liek~ 90 (661)
-.|+|||||..|+-+|..+.+. | .+|.++.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEcc
Confidence 3799999999999999988887 5 379999875
No 376
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.25 E-value=0.97 Score=50.42 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=27.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
-.|+|||||..|+-+|..+.+.|. +|.+++..
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~ 316 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEec
Confidence 369999999999999888888875 69999875
No 377
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.14 E-value=0.22 Score=58.84 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred HHHHhCCcEEEEeEEEEEEEEe-CCEEEEEEEEEcC------C------C-------------cEEEEEcCeEEEcCCc
Q psy15089 203 GQSLRYDCNYFVEYFALDLIIE-NGECKGVIALCLE------D------G-------------SIHRFNANNTVLATGG 255 (661)
Q Consensus 203 ~~a~~~gv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~------~------G-------------~~~~i~Ak~VIlAtGg 255 (661)
+.|.+.||++.+....++++.+ +|++.|+.+.... . + +...|.|+.||+|.|-
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 4567789999999999999886 4899998776422 1 2 4467999999999994
No 378
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.91 E-value=1.3 Score=46.82 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHh---CCcEEEEeEEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 195 HSLLHTLYGQSLR---YDCNYFVEYFALDLIIEN-GECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 195 ~~l~~~L~~~a~~---~gv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
.+|-..|+++... ..+.++..+.+..+...+ |+ .-....+..+|+..++..|+||+|||
T Consensus 275 ~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 275 EEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred HHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecc
Confidence 4566777777432 258899999999998765 54 33555555788888999999999999
No 379
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.41 E-value=0.12 Score=57.14 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=40.2
Q ss_pred CcccCCCCeEEeecCCCCccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 409 Gi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
|+..|.+|+++.. ...+|++||+||+|||.. |... -+..++..++.++.++.+++..
T Consensus 367 gv~~n~~G~V~~d-~~~~T~ipGvyAaGDi~~----Gp~g----vI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 367 GVVPNVHGRVLSS-ASGADTEPGLYVVGWLKR----GPTG----IIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CeeECCCceEEeC-CCCccCCCCEEEeeeEec----CCCC----eeeecHhhHHHHHHHHHHHHHc
Confidence 5666778887653 344699999999999873 3322 3445566788899998888643
No 380
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.51 E-value=0.71 Score=52.33 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccc
Q psy15089 201 LYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYG 257 (661)
Q Consensus 201 L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~ 257 (661)
|....++.|++++.+....+++. ++++.++.. .+|.. +.|+-||.|+|--.
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~---~DG~~--i~ad~VV~a~GIrP 243 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRF---ADGTE--IPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc-CcceeeEee---cCCCc--ccceeEEEeccccc
Confidence 33445677999888776666655 667777765 56764 88999999999544
No 381
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.00 E-value=0.18 Score=43.25 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|||||||..|..-+..|.+.|++|+|+.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 57999999999999999999999999999876
No 382
>PRK04148 hypothetical protein; Provisional
Probab=90.96 E-value=0.99 Score=40.51 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=28.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..+++||.| .|...|..|++.|.+|+.+|..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence 359999999 9988899999999999999975
No 383
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.40 E-value=0.4 Score=44.05 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=29.1
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
|+|+|+|..|+..|..|++.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999863
No 384
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.37 E-value=0.26 Score=54.58 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
-|+|||.|++|++||..|.+.|++|++.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 38999999999999999999999999999863
No 385
>KOG0404|consensus
Probab=90.14 E-value=1.6 Score=42.34 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=42.2
Q ss_pred HHHHhC-CcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCC
Q psy15089 203 GQSLRY-DCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254 (661)
Q Consensus 203 ~~a~~~-gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtG 254 (661)
+++++. +|++++++.+++.+-+.+.+-|..+.+..+|+...+..+.+..|-|
T Consensus 200 ~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 200 QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred HHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec
Confidence 344443 7899999988888777667778888888999998999999999998
No 386
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.01 E-value=0.34 Score=54.00 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||+|.+|+.+|..|++.|.+|+++|+.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6999999999999999999999999999965
No 387
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.84 E-value=0.39 Score=46.84 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|||||||..|...+..|.+.|++|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999864
No 388
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.45 E-value=0.34 Score=45.04 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=28.2
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
|.|+|+|..|.+.|..++++|.+|.|..+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 789999999999999999999999999764
No 389
>KOG2755|consensus
Probab=88.97 E-value=0.29 Score=48.39 Aligned_cols=30 Identities=33% Similarity=0.333 Sum_probs=26.1
Q ss_pred EEEECCcHHHHHHHHHhHHC--CCcEEEEEec
Q psy15089 61 AVVVGAGGAGLRAAFGLVAE--GFKTAVITKL 90 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~--G~~V~liek~ 90 (661)
.+|||||+||.++|-.+++. ...++||...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 58999999999999999975 4678988765
No 390
>KOG2495|consensus
Probab=88.97 E-value=1.7 Score=46.16 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 199 HTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 199 ~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
+.-.++..+.|+++..++.|.++.-+ .+ .+. ..+|+...|..--+|=|||-
T Consensus 277 ~yae~~f~~~~I~~~~~t~Vk~V~~~--~I---~~~-~~~g~~~~iPYG~lVWatG~ 327 (491)
T KOG2495|consen 277 EYAENQFVRDGIDLDTGTMVKKVTEK--TI---HAK-TKDGEIEEIPYGLLVWATGN 327 (491)
T ss_pred HHHHHHhhhccceeecccEEEeecCc--EE---EEE-cCCCceeeecceEEEecCCC
Confidence 33344556678999888888876322 22 222 25788888888889999994
No 391
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.60 E-value=0.47 Score=45.79 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=28.7
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
.-.|+|||+|..+.-+|..|++.|.+|.++-+.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3679999999999999999999999999998864
No 392
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.59 E-value=0.72 Score=41.68 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=29.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCc-EEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFK-TAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~ 90 (661)
...|+|||+|.+|-.++..|++.|.+ |.|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35799999999999999999999988 8888775
No 393
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=87.95 E-value=0.5 Score=51.12 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 204 QSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 204 ~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
.+...|.+|+.++.|++|..++++|. +.. .+|+ .+.||.||+|+...
T Consensus 218 ~~~~~g~~i~l~~~V~~I~~~~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 218 AAEELGGEIRLNTPVTRIEREDGGVT-VTT---EDGE--TIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHGGGEESSEEEEEEEEESSEEE-EEE---TTSS--EEEESEEEE-S-HH
T ss_pred HHhhcCceeecCCcceeccccccccc-ccc---ccce--EEecceeeecCchh
Confidence 34445779999999999999998775 222 5666 58999999999853
No 394
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.91 E-value=0.74 Score=43.34 Aligned_cols=32 Identities=31% Similarity=0.214 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.-|+|+|+|.+|..||..|...|++|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 68999999999999999999999999999974
No 395
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.88 E-value=0.68 Score=44.16 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.6
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
|.|||+|..|..-|..++..|++|.++|..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 789999999999999999999999999975
No 396
>KOG3923|consensus
Probab=87.53 E-value=0.57 Score=47.33 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=32.9
Q ss_pred cccEEEECCcHHHHHHHHHhHHCC-------CcEEEEEecCCCCCCcccccC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEG-------FKTAVITKLFPTRSHTVAAQG 102 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G-------~~V~liek~~~~~~~s~~a~G 102 (661)
..+|+|||+|..||+.|+.+.+.+ ++|.+++-.+.....+..+.|
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AG 54 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAG 54 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccc
Confidence 368999999999999998888843 578888765544444444433
No 397
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.99 E-value=0.81 Score=42.54 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=28.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEe
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek 89 (661)
-.|||||||..|..-|..|.+.|++|+||+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4699999999999999999999999999953
No 398
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.91 E-value=0.71 Score=50.96 Aligned_cols=32 Identities=34% Similarity=0.294 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||+|.+|+.+|..|++.|++|+++|+.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999999999999875
No 399
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.74 E-value=0.83 Score=44.44 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|||||||-.|...|-.|.+.|++|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999999999999753
No 400
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=86.61 E-value=0.73 Score=46.58 Aligned_cols=45 Identities=31% Similarity=0.536 Sum_probs=36.8
Q ss_pred CccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhc
Q psy15089 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEEN 472 (661)
Q Consensus 426 ~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~ 472 (661)
.--+||||++|=.+ ..+||.+|+| --++..+.+|+.||+.|.+.+
T Consensus 209 ~~~~~g~~~~gm~~-~~~~~~~rmg-p~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 209 REVVPNLYVAGMAV-AAVHGLPRMG-PIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred CcccCCEEEechhh-hhhcCCCCcC-chHHHHHHhhHHHHHHHHHHh
Confidence 45699999999865 5899999995 456667789999999988754
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.57 E-value=0.81 Score=49.02 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=30.3
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..+|+|||+|.+|+.+|..|...|.+|+++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 357999999999999999999999999999874
No 402
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=86.28 E-value=0.59 Score=45.26 Aligned_cols=46 Identities=35% Similarity=0.572 Sum_probs=36.8
Q ss_pred CccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 426 ~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
....||||++|=.+ .-+||++|+| --++..+.+|+.||+.+.+.++
T Consensus 215 ~eV~pgL~vaGMa~-~av~G~pRMG-PiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 215 GEVYPGLYVAGMAV-NAVHGLPRMG-PIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccCCeEeehhhH-HhhcCCcccC-chhhhhhhchHHHHHHHHHHhh
Confidence 45699999999866 5799999995 4455667899999998887664
No 403
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.18 E-value=0.85 Score=50.66 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=30.3
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
...|+|+|+|++|+.|+..|...|++|.++|..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999999999999999999999875
No 404
>KOG4716|consensus
Probab=86.16 E-value=1.6 Score=44.95 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.-||||+|..+|-||-.|+-.|+.|+|+-+.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 5699999999999999999999999999886
No 405
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.03 E-value=0.71 Score=44.23 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|.|||.|..|+..|..+++.|++|+.+|..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 3789999999999999999999999999965
No 406
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.76 E-value=1 Score=44.55 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
.++|||+|..|...|-.|.+.|..|++||+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999863
No 407
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.21 E-value=0.73 Score=46.85 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=31.0
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.-+|+|||||.+|.-||--|...|++|+++|..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 468999999999999999999999999999976
No 408
>KOG3851|consensus
Probab=85.15 E-value=0.76 Score=46.82 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=28.4
Q ss_pred cccccEEEECCcHHHHHHHHHhHHC-CC-cEEEEEec
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAE-GF-KTAVITKL 90 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~-G~-~V~liek~ 90 (661)
..++.|||||||.+|+..|....+. |. +|.|||-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 3569999999999999999988875 32 68888853
No 409
>KOG1439|consensus
Probab=84.97 E-value=0.49 Score=49.71 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=35.2
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
+.+|||+|+|.|.-=+..+..|+..|.+|+.+||+..-|+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~ 41 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG 41 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCc
Confidence 4469999999999999999999999999999999865443
No 410
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=84.79 E-value=0.92 Score=45.97 Aligned_cols=46 Identities=35% Similarity=0.575 Sum_probs=37.7
Q ss_pred CccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 426 ~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
.-..||||++|=.+ ..+||.+|+| --++..+.+|+.||+.|.+.++
T Consensus 210 ~~~~~g~~~~gm~~-~~~~~~~rmg-~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 210 GEVYPGLYVAGMAA-NAVHGLPRMG-PIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CeEcCCEEEeehhh-hhhcCCCccC-chhHhHHHhHHHHHHHHHHHhh
Confidence 35699999999865 5799999995 4566677899999999988764
No 411
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=84.50 E-value=3.7 Score=44.21 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=33.5
Q ss_pred hCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCccccc
Q psy15089 207 RYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259 (661)
Q Consensus 207 ~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~~~~ 259 (661)
+.+++++.++.|+.+..+...+. ..+| .+..+..|+|||+....
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~------~~~g---~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVL------LDDG---EIEYDYLVLATGARPRP 108 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEE------ECCC---cccccEEEEcCCCcccC
Confidence 56899999999999887766543 1455 58889999999986543
No 412
>KOG4405|consensus
Probab=84.44 E-value=0.94 Score=47.65 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=34.6
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
..++||||||.|.-=...|.++++.|.+|+=+|.....|+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 4579999999999999999999999999999998765443
No 413
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=83.84 E-value=1.6 Score=45.59 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=34.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
.|||+|+|.|+-=+..+..|+..|.+|+.|||+..-|+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 69999999999999999999999999999999865443
No 414
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.86 E-value=1.5 Score=45.78 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..++++|++|+++++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 5899999999999999999999999999975
No 415
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.83 E-value=1.7 Score=45.21 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..|+|||+|.-|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 36999999999999999999999999999985
No 416
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.64 E-value=1.7 Score=44.94 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCc-EEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFK-TAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~ 90 (661)
--++|+|+|.+|.++|..+++.|++ |.|+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3689999999999999999999997 8888874
No 417
>PLN02661 Putative thiazole synthesis
Probab=82.08 E-value=1.4 Score=46.49 Aligned_cols=46 Identities=15% Similarity=0.380 Sum_probs=38.6
Q ss_pred CccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcC
Q psy15089 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473 (661)
Q Consensus 426 ~T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~ 473 (661)
+-.+||||++|=.+ ..+||.+|+| --++..+.+|+.||+.|.+.++
T Consensus 283 ~ev~pgl~~~gm~~-~~~~g~~rmg-p~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 283 REVVPGMIVTGMEV-AEIDGSPRMG-PTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred CcccCCEEEeccch-hhhcCCCccC-chhHhHHhhhHHHHHHHHHHHc
Confidence 45699999999865 6899999995 4566778899999999998875
No 418
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.00 E-value=1.7 Score=47.02 Aligned_cols=32 Identities=31% Similarity=0.272 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|+|.|+.|+.+|..|+..|++|+++|..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 47999999999999999999999999999865
No 419
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.70 E-value=1.6 Score=44.84 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
..|+|||+|.+|.++|..|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 469999999999999999999997 68888775
No 420
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.44 E-value=2.4 Score=36.79 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=27.1
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
|+|+|.|..|...|-.|.+.+.+|+++|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 799999999999999999977799999986
No 421
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=81.28 E-value=2 Score=42.25 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=29.1
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..|||||||..++.=+..|.+.|++|+||...
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999754
No 422
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.22 E-value=2.1 Score=43.43 Aligned_cols=36 Identities=31% Similarity=0.243 Sum_probs=31.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCC-CcEEEEEecCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEG-FKTAVITKLFP 92 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G-~~V~liek~~~ 92 (661)
....|+|||.|..|..+|..|++.| -+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 3578999999999999999999999 47999997643
No 423
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=80.95 E-value=2 Score=44.58 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEe
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek 89 (661)
.|+|||+|..|...|..|+++|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999987
No 424
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.46 E-value=2.1 Score=41.50 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=31.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~ 91 (661)
....|+|||+|.-|...|..|++.|. +++|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34689999999999999999999998 599998763
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.17 E-value=2.4 Score=44.79 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=32.1
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFPT 93 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~~ 93 (661)
.+..|+|||+|..|..+|..|++.|. +++|+|.....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 34679999999999999999999998 78999987543
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.13 E-value=2.2 Score=44.20 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|||+|..|...|..|++.|.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 3899999999999999999999999999974
No 427
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.00 E-value=2.3 Score=43.86 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|..|...|..++++|.+|.+++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5899999999999999999999999999964
No 428
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.58 E-value=2.4 Score=43.65 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..++++|.+|++++..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4899999999999999999999999999975
No 429
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.55 E-value=2.3 Score=47.24 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
...|+|+|+|.+|+.|+..|...|.+|+++|..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 368999999999999999999999999999875
No 430
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=79.50 E-value=2.5 Score=41.90 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=29.0
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCc---EEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFK---TAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~---V~liek~ 90 (661)
..|+|+|+|.+|..+|..|.+.|.+ +.++++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4699999999999999999999985 8899886
No 431
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.49 E-value=2.5 Score=43.12 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=28.1
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCc-EEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFK-TAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~ 90 (661)
.|+|+|+|.|+.++++.|++.|.+ |.|+.+.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 699999999999999999999975 8888875
No 432
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.38 E-value=2 Score=47.38 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|+|+|+|..|+++|..|++.|++|++.|+.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4899999999999999999999999999865
No 433
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.73 E-value=3 Score=43.57 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..|+|||+|.-|...|..|+++|.+|+++.+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 36999999999999999999999999999885
No 434
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=78.16 E-value=2.7 Score=44.46 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=32.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFP 92 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~ 92 (661)
.+..|+|||+|.-|..+|..|++.|. +++|+|....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35789999999999999999999998 7999998643
No 435
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=78.01 E-value=2.7 Score=45.06 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred ccccceeeeccccccCCCCCCccchhhhhhHHHHHHHHHHHHHHhcCC
Q psy15089 427 KIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKP 474 (661)
Q Consensus 427 T~ipGLyAaGe~a~~g~hGanrlgg~~l~~a~v~G~~Ag~~aa~~~~~ 474 (661)
..+||||+||+.+ |+.| ..+|...|.+||.+|+.+++.
T Consensus 353 k~~~~lf~AGqi~--G~~G--------y~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 353 KKIPGLFFAGQIN--GTEG--------YEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp SSSBTEEE-GGGG--TB-S--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCceECCCCc--chhH--------HHHHHHHHHHHHHHHHHHHcC
Confidence 4599999999975 4333 568899999999999988754
No 436
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=76.97 E-value=3.8 Score=40.97 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=31.4
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFPT 93 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~~ 93 (661)
....|+|||.|..|..+|..|++.|. +++++|.....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 35789999999999999999999997 57888876443
No 437
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.64 E-value=3.3 Score=42.77 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..++++|.+|++++..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999865
No 438
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.44 E-value=3.3 Score=42.69 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|.|||+|.-|..-|..++..|++|+++|..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence 5899999999999999999999999999975
No 439
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.32 E-value=3.3 Score=43.29 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|.|||+|..|..-|..++..|++|+++|..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4899999999999999999999999999965
No 440
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=76.16 E-value=3.2 Score=42.63 Aligned_cols=32 Identities=41% Similarity=0.502 Sum_probs=27.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
..|+|+|+|.|+-++++.|++.|. ++.|+.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 468999999999999999999997 57787764
No 441
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=76.06 E-value=3.7 Score=39.91 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.3
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~ 91 (661)
.+.-|+|||.|..|..+|..|++.|. +++++|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45789999999999999999999997 789998764
No 442
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=76.03 E-value=2.9 Score=47.09 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
--|+|+|+|.+|.++|..|++.|++|+++.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899999999999999999999998888763
No 443
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=75.94 E-value=1.9 Score=46.73 Aligned_cols=33 Identities=39% Similarity=0.606 Sum_probs=31.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
+||+|||+|++|+++|+.+++.|.+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999874
No 444
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.92 E-value=3.5 Score=42.58 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..+++.|.+|+++|..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4899999999999999999999999999975
No 445
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.81 E-value=3.3 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-||+.|.-+++.|++|+++|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999999999999999999975
No 446
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.78 E-value=3.4 Score=44.14 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHhHHCC-CcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEG-FKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G-~~V~liek~ 90 (661)
+|||||+|..|..+|..|++.| .+|++.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 6999999999999999999998 899999986
No 447
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=75.60 E-value=7.8 Score=41.88 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCcc
Q psy15089 196 SLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGY 256 (661)
Q Consensus 196 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg~ 256 (661)
.+.+.|.+.+++.|++|+.++.|++|..+++++..++. .+|+ .+.||.||+|+-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~---~~g~--~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVL---SGGE--TLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEe---cCCc--cccCCEEEEcCCHH
Confidence 34455888888889999999999999988776543322 2454 48899999987743
No 448
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.58 E-value=3.6 Score=42.60 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=30.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
...|+|||.|.+|..+|..|...|.+|.++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 468999999999999999999999999999875
No 449
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.32 E-value=4.3 Score=38.38 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=28.4
Q ss_pred EEEECCcHHHHHHHHHhHHCCCc-EEEEEecC
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFK-TAVITKLF 91 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~-V~liek~~ 91 (661)
|+|||+|..|...|..|++.|.. ++++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 89999999999999999999985 99999763
No 450
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=75.07 E-value=3.7 Score=43.39 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..++++|.+|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999974
No 451
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=74.60 E-value=4 Score=36.71 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=30.0
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFP 92 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~ 92 (661)
+.-|+|||+|.-|...|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3569999999999999999999998 5899997643
No 452
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=74.60 E-value=3.9 Score=42.06 Aligned_cols=32 Identities=34% Similarity=0.638 Sum_probs=28.2
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
..|+|||+|.+|-+++..|++.|. +|.|+.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999997 58888764
No 453
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=74.28 E-value=5 Score=36.41 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=28.8
Q ss_pred EEEECCcHHHHHHHHHhHHCCC-cEEEEEecCC
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFP 92 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~ 92 (661)
|+|||.|.-|...|..|++.|. +++++|....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 8999999999999999999998 6899987643
No 454
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=74.23 E-value=4.6 Score=37.96 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=29.7
Q ss_pred ccccEEEECCcH-HHHHHHHHhHHCCCcEEEEEec
Q psy15089 57 HQFDAVVVGAGG-AGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 57 ~~~DVlVVGgG~-AGl~AA~~aa~~G~~V~liek~ 90 (661)
....|+|||+|- +|..+|..|.+.|++|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 347899999996 6999999999999999999875
No 455
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.21 E-value=3.9 Score=45.06 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|+|.|.+|+++|..|++.|.+|++.|..
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999999999999999999864
No 456
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=73.90 E-value=4.1 Score=44.01 Aligned_cols=34 Identities=24% Similarity=0.106 Sum_probs=30.6
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
.-.|+|||.|..|..+|..|+..|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3579999999999999999999999999998753
No 457
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=73.80 E-value=4.3 Score=39.35 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=28.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.-|+|+|.|-.|..+|..|.+.|++|++.|..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35999999999999999999999999987753
No 458
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=73.27 E-value=3.2 Score=37.50 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=27.1
Q ss_pred EEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 61 VlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
++|+|+|.-+...|--++..|++|+|+|-..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999763
No 459
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=73.20 E-value=4.4 Score=41.55 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=28.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCC-CcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEG-FKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G-~~V~liek~ 90 (661)
..|+|+|+|.+|.+++..|++.| .+|+|+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46999999999999999999999 679998874
No 460
>PRK08328 hypothetical protein; Provisional
Probab=73.09 E-value=4.7 Score=40.10 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=29.7
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecC
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLF 91 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~ 91 (661)
...|+|||+|..|..+|..|++.|. ++.++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999997 477887654
No 461
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=72.93 E-value=4.5 Score=41.29 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=28.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.++|+|+|.+|.+.|..+++.|.+|.++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999888764
No 462
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=72.85 E-value=4.7 Score=38.75 Aligned_cols=32 Identities=38% Similarity=0.488 Sum_probs=28.4
Q ss_pred ccEEEECC-cHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGA-GGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGg-G~AGl~AA~~aa~~G~~V~liek~ 90 (661)
..++|+|| |..|..+|..+++.|.+|.++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999997 999999999999999999998764
No 463
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.64 E-value=4 Score=45.57 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|+|+|.|..|++++..|.+.|++|++.|..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999999999999999998854
No 464
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.53 E-value=4.8 Score=41.27 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|..|...|..+++.|.+|+++|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 5899999999999999999999999999864
No 465
>KOG1346|consensus
Probab=72.49 E-value=7.4 Score=41.30 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCcEEEEeEEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEEcCCc
Q psy15089 198 LHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG 255 (661)
Q Consensus 198 ~~~L~~~a~~~gv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~Ak~VIlAtGg 255 (661)
.++-.+..++.||.++.+..|..+.. +++-..+.+.+|.. ++.|.||+|+|-
T Consensus 396 s~wt~ekir~~GV~V~pna~v~sv~~----~~~nl~lkL~dG~~--l~tD~vVvavG~ 447 (659)
T KOG1346|consen 396 SQWTIEKIRKGGVDVRPNAKVESVRK----CCKNLVLKLSDGSE--LRTDLVVVAVGE 447 (659)
T ss_pred HHHHHHHHHhcCceeccchhhhhhhh----hccceEEEecCCCe--eeeeeEEEEecC
Confidence 34444566778899888887776644 44444556688864 889999999993
No 466
>KOG4254|consensus
Probab=72.47 E-value=2.9 Score=44.85 Aligned_cols=39 Identities=36% Similarity=0.466 Sum_probs=34.9
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCcEEEEEecCCCCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~~~~~ 95 (661)
.+||++|||+|.-||.||..+++.|.+|+++|+....+|
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 469999999999999999999999999999999854444
No 467
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=71.92 E-value=2 Score=44.74 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeEEEEEEEEeC--CEEE-EEEEEEcCCCcEEEEEc-CeEEEcCCcc
Q psy15089 195 HSLLHTLYGQSLRYDCNYFVEYFALDLIIEN--GECK-GVIALCLEDGSIHRFNA-NNTVLATGGY 256 (661)
Q Consensus 195 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--g~v~-Gv~~~~~~~G~~~~i~A-k~VIlAtGg~ 256 (661)
..++..|...++.+||++-.+..|.++.+++ |+.+ -++- -..+++..++.- +.|++..|..
T Consensus 227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih-~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIH-VLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHH-HhcCcceeecCCCceEEEeccee
Confidence 4678888889999999999999999998875 4221 1110 124566666665 4566655654
No 468
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.54 E-value=5.2 Score=41.71 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=28.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCC--CcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEG--FKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G--~~V~liek~ 90 (661)
.|.|||+|..|.+.|+.+++.| ..|+++|+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 4899999999999999999999 479999975
No 469
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=71.33 E-value=4.9 Score=42.71 Aligned_cols=30 Identities=37% Similarity=0.365 Sum_probs=24.8
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCc-EEEEEe
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFK-TAVITK 89 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~-V~liek 89 (661)
.|+|+|+|+-||.++..|+..|++ |+++|.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 599999999999998888888975 455554
No 470
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.18 E-value=5.2 Score=41.23 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
...|+|||.|..|...|..|+..|.+|.++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999875
No 471
>PRK08223 hypothetical protein; Validated
Probab=71.03 E-value=6 Score=40.52 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=30.9
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecCC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLFP 92 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~~ 92 (661)
.+..|+|||.|.-|..+|..|+..|. ++.|+|....
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 45789999999999999999999997 5788886643
No 472
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=70.95 E-value=5.3 Score=39.01 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|||||||-.|+.=|..+.+.|.+|+|+.+.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 47999999999999999999999999999765
No 473
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.77 E-value=6.4 Score=38.56 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.0
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCCc-EEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGFK-TAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~~-V~liek~~ 91 (661)
....|+|||+|..|...|..|++.|.. ++++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 357899999999999999999999985 89998764
No 474
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.73 E-value=6.8 Score=40.38 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=27.5
Q ss_pred cEEEECC-cHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGA-GGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGg-G~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|+|.|| |..|...|..+++.|++|+++.+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4888886 888999999999999999999875
No 475
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.50 E-value=4.6 Score=44.90 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|+|+|.|.+|+++|..|.+.|.+|.+.|+.
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4899999999999999999999999998864
No 476
>KOG2755|consensus
Probab=70.39 E-value=3.1 Score=41.43 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=21.2
Q ss_pred cccCcccCCCCeEEeecCCCCccccceeeeccccccCCC
Q psy15089 406 NMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVH 444 (661)
Q Consensus 406 ~~GGi~vd~~~~vl~~d~~~~T~ipGLyAaGe~a~~g~h 444 (661)
-.||+.+|..+ .|+.|.+|||||+....-|
T Consensus 296 edggikvdd~m---------~tslpdvFa~gDvctt~~~ 325 (334)
T KOG2755|consen 296 EDGGIKVDDAM---------ETSLPDVFAAGDVCTTTWE 325 (334)
T ss_pred cccCeeehhhc---------cccccceeeecceeccCCC
Confidence 34667766655 5999999999997543333
No 477
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=70.36 E-value=5.3 Score=43.44 Aligned_cols=33 Identities=27% Similarity=0.171 Sum_probs=30.1
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.--|+|+|.|..|..+|..|...|.+|+++|..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVD 244 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 346999999999999999999999999999875
No 478
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=70.35 E-value=5.7 Score=41.30 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=27.5
Q ss_pred cEEEECCcHHHHHHHHHhHHCCC-cEEEEEe
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGF-KTAVITK 89 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~-~V~liek 89 (661)
-|.|||+|..|...|..++..|. +|+++|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999876 8999996
No 479
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=70.22 E-value=7.3 Score=31.93 Aligned_cols=31 Identities=35% Similarity=0.379 Sum_probs=27.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHC-CCcEEEEEe
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAE-GFKTAVITK 89 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~-G~~V~liek 89 (661)
..++|+|.|..|..+|..+.+. +.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4699999999999999999998 567888877
No 480
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=69.98 E-value=6 Score=40.51 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
..++|+|+|.|+-+++..|++.|. +++|+.|.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 459999999999999999999995 68888875
No 481
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.94 E-value=5.7 Score=41.68 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..|+++|.+|.++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3899999999999999999999999999874
No 482
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.73 E-value=6 Score=41.20 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|..|...|..+++.|++|++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5899999999999999999999999999864
No 483
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=69.67 E-value=6.1 Score=40.72 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.5
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCC-cEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~ 90 (661)
..|+|+|+|.|+.++|..+++.|. +++|+.+.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 469999999999998898999887 68888875
No 484
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=68.95 E-value=6.2 Score=39.60 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=30.6
Q ss_pred ccccEEEECCcHHHHHHHHHhHHCCC-cEEEEEecC
Q psy15089 57 HQFDAVVVGAGGAGLRAAFGLVAEGF-KTAVITKLF 91 (661)
Q Consensus 57 ~~~DVlVVGgG~AGl~AA~~aa~~G~-~V~liek~~ 91 (661)
.+..|+|||.|.-|..+|..|+..|. +++|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35789999999999999999999997 688888763
No 485
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.86 E-value=5.3 Score=44.02 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=29.8
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
+--|+|||-|..|+++|..|.+.|++|.+.|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCC
Confidence 345899999999999999999999999999964
No 486
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.67 E-value=5.4 Score=44.12 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|+|+|.|..|+++|..|.+.|++|.+.|+.
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCC
Confidence 6999999999999999999999999999975
No 487
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=67.81 E-value=5.5 Score=43.82 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.8
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
-+|+|||+|.+|.-.|-.|++.|.+|.++-+.+
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 489999999999999999999999999998864
No 488
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.36 E-value=6 Score=43.06 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||.|..|+..|..+++.|++|+++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 4889999999999999999999999999975
No 489
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.10 E-value=5.7 Score=44.07 Aligned_cols=31 Identities=23% Similarity=0.031 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|+|+|.|-.|.+||..|.+.|.+|++.|..
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 5999999999999999999999999999965
No 490
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=66.87 E-value=6.5 Score=39.34 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=29.3
Q ss_pred cccccEEEECCcHHHHHHHHHhHHCC-----------CcEEEEEecC
Q psy15089 56 DHQFDAVVVGAGGAGLRAAFGLVAEG-----------FKTAVITKLF 91 (661)
Q Consensus 56 ~~~~DVlVVGgG~AGl~AA~~aa~~G-----------~~V~liek~~ 91 (661)
.....|+|||+|.-|...+-.|++.| .+++|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 34578999999999999999999974 2677777653
No 491
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=66.54 E-value=5.6 Score=44.03 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=29.7
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-.|+|||+|..|+-.|..|++.+.+|+++.+.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 36999999999999999999999999999875
No 492
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=66.49 E-value=6.8 Score=42.72 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||.|..|+..|..+++.|.+|++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 4899999999999999999999999999975
No 493
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=66.37 E-value=7.6 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|..|...|..+++.|.+|.++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5899999999999999999999999999875
No 494
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=66.22 E-value=7.6 Score=40.10 Aligned_cols=31 Identities=29% Similarity=0.251 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..++..|.+|++++..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4899999999999999999999999999875
No 495
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=65.88 E-value=12 Score=40.32 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHCCCcEEEEEecCCCCCC
Q psy15089 68 GAGLRAAFGLVAEGFKTAVITKLFPTRSH 96 (661)
Q Consensus 68 ~AGl~AA~~aa~~G~~V~liek~~~~~~~ 96 (661)
+|||+||+.|+++|.+|+|+|+....||.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 69999999999999999999998765553
No 496
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=65.88 E-value=7.7 Score=40.37 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=27.8
Q ss_pred cEEEECCcHHHHHHHHHhHHCCC--cEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGF--KTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~--~V~liek~ 90 (661)
-|.|||+|..|.+.|..|+..|. .++++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 38999999999999999999984 69999975
No 497
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.73 E-value=7.6 Score=40.79 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.|.|||+|.-|...|..|+++|.+|.++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999874
No 498
>PRK08017 oxidoreductase; Provisional
Probab=65.45 E-value=8.3 Score=38.48 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.2
Q ss_pred cEEEECC-cHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 60 DAVVVGA-GGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 60 DVlVVGg-G~AGl~AA~~aa~~G~~V~liek~ 90 (661)
-|+|+|+ |.-|...|..++++|.+|+++.+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3899998 999999999999999999998764
No 499
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=65.45 E-value=7.4 Score=36.16 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=26.4
Q ss_pred ccEEEECCcHHHHHHHHHhHHCCCcEEEEEecC
Q psy15089 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91 (661)
Q Consensus 59 ~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~~ 91 (661)
-.++|+|=|-.|-..|..|+..|++|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999763
No 500
>PLN02494 adenosylhomocysteinase
Probab=65.38 E-value=8.2 Score=42.32 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHhHHCCCcEEEEEec
Q psy15089 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90 (661)
Q Consensus 58 ~~DVlVVGgG~AGl~AA~~aa~~G~~V~liek~ 90 (661)
.-.|+|+|.|..|..+|..|...|.+|+++|..
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~d 286 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEID 286 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999999999999999999999999875
Done!