RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15089
(661 letters)
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 1156 bits (2993), Expect = 0.0
Identities = 446/629 (70%), Positives = 511/629 (81%), Gaps = 21/629 (3%)
Query: 36 HGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95
+ S +S YPV+DH +DAVVVGAGGAGLRAA GLV G+KTA I+KLFPTRS
Sbjct: 7 FNRLTRTFFSGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66
Query: 96 HTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGM 155
HTVAAQGGINAALGNM EDDW WH YDTVKGSDWLGDQDAI YM REAP+AV+ELE+YG+
Sbjct: 67 HTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQYMCREAPQAVLELESYGL 126
Query: 156 PFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215
PFSRT DGKIYQRAFGGQSLK+GKGGQA+RC A ADRTGH++LHTLYGQSL+YDCN+F+E
Sbjct: 127 PFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186
Query: 216 YFALDLII-ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGT 274
YFALDLI+ E+GEC+GVIA+ +EDGSIHRF A+ TV+ATGGYGRAYFSCTSAHTCTGDG
Sbjct: 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGG 246
Query: 275 AMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDL 334
AM+SRAGLP +DLEFVQFHPTGIYGAGCLITEGCRGEGG L NSEGERFMERYAP AKDL
Sbjct: 247 AMVSRAGLPLQDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPTAKDL 306
Query: 335 ASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTR 394
ASRDVVSR+MTIEI EGRG GP+KDH+YL L HLPPE LH+RLPGISETA IFAGVDVT+
Sbjct: 307 ASRDVVSRAMTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTK 366
Query: 395 EPIPVLPTVHYNMGGIPTNYKGQVLTHVNG-QDKIIHGLYAAGEASCSSVHGANRLGANS 453
EPIPVLPTVHYNMGGIPTN+K QVLT NG DKI+ GL AAGEA+C+SVHGANRLGANS
Sbjct: 367 EPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANS 426
Query: 454 LLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQ 513
LLD+VVFGRA A T+ E KPG P +AGE+S+A LD +RH KGDI+TA +R MQ
Sbjct: 427 LLDIVVFGRAAANTVMEILKPGRPQPDLPKDAGEASIARLDKIRHNKGDISTAQIRKRMQ 486
Query: 514 KTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAI 573
+TMQ +AAVFR E+LQEG K+ +Y D +K+ D+SL+WNTDL+ETLEL+NL+ A
Sbjct: 487 RTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAK 546
Query: 574 QTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDV-DVNTG 632
QT+ +AE RKESRGAHAR+DF R D ++W KHTL+ + DV G
Sbjct: 547 QTILSAEARKESRGAHARDDFPERDD-----------------KNWMKHTLSYIRDVKKG 589
Query: 633 KVKIYYRPVIDKTLDAKECATIAPAIRSY 661
KV++ YRPVI LD E T+ PA R Y
Sbjct: 590 KVRLTYRPVITTPLD-NEMETVPPAKRVY 617
>gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 1107 bits (2866), Expect = 0.0
Identities = 409/615 (66%), Positives = 472/615 (76%), Gaps = 21/615 (3%)
Query: 49 SREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAAL 108
Y ++DH++D VVVGAGGAGLRA G+ G KTA ITK+FPTRSHTVAAQGGI+A+L
Sbjct: 3 MSAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASL 62
Query: 109 GNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQR 168
GNM EDDW WHMYDTVKGSDWLGDQDAI YM REAP AV ELE+YG+PFSRT +GKIYQR
Sbjct: 63 GNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQR 122
Query: 169 AFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN-GE 227
FGG + YGKG A R CA ADRTGH++LHTLY QSL+++ +F+EYFALDLI+++ G
Sbjct: 123 PFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGV 182
Query: 228 CKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDL 287
C+GV+A L+DG++HRF A+ VLATGGYGRAYFS TSAHTCTGDG M+ RAGLP +D+
Sbjct: 183 CRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDM 242
Query: 288 EFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIE 347
EFVQFHPTGIYGAGCLITEG RGEGGYL NSEGERFMERYAP AKDLASRDVVSR+MTIE
Sbjct: 243 EFVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIE 302
Query: 348 IREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNM 407
IREGRGVG KDH++L L HL PE LH+RLPGISE+A IFAGVDVT+EPIPVLPTVHYNM
Sbjct: 303 IREGRGVGKKKDHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNM 362
Query: 408 GGIPTNYKGQVLTHVNG-QDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAK 466
GGIPTNY G+VLT D ++ GL A GEA+C SVHGANRLG+NSL+DLVVFGRA A
Sbjct: 363 GGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAAL 422
Query: 467 TIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQ 526
AE KPGAP P +A + ++ D +RHA G TA+LRL MQ+TMQ AAVFRT
Sbjct: 423 RAAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTG 482
Query: 527 ETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESR 586
E L+EG K++ ++ L +KV DRSLIWN+DLVETLEL NLM A+ TM +AENRKESR
Sbjct: 483 EVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESR 542
Query: 587 GAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTL 646
GAHAREDF R D E+W KHTL VD + GKVK+ YRPV TL
Sbjct: 543 GAHAREDFPDRDD-----------------ENWMKHTLAWVD-DKGKVKLDYRPVHLYTL 584
Query: 647 DAKECATIAPAIRSY 661
+ I P R Y
Sbjct: 585 -TDDVQYIPPKKRVY 598
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 1049 bits (2713), Expect = 0.0
Identities = 430/619 (69%), Positives = 494/619 (79%), Gaps = 22/619 (3%)
Query: 45 SDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGI 104
+ Y +VDH +DAVVVGAGGAGLRAA GL GF TA ITKLFPTRSHTVAAQGGI
Sbjct: 37 TGGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGI 96
Query: 105 NAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGK 164
NAALGNM EDDW WHMYDTVKGSDWLGDQDAI YM REAPKAVIELENYG+PFSRT DGK
Sbjct: 97 NAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGK 156
Query: 165 IYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIE 224
IYQRAFGGQSL +GKGGQA+RC ADRTGH++LHTLYGQ+++++ +FVEYFALDLI++
Sbjct: 157 IYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMD 216
Query: 225 N-GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLP 283
+ G C+GVIAL +EDG++HRF A++T+LATGGYGRAYFS TSAHTCTGDG AM++RAGLP
Sbjct: 217 SDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLP 276
Query: 284 NEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRS 343
+DLEFVQFHPTGIYGAGCLITEG RGEGG L NSEGERFMERYAP AKDLASRDVVSRS
Sbjct: 277 LQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRS 336
Query: 344 MTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTV 403
MT+EIREGRGVGP+KDH+YL L+HLPPE L +RLPGISETA IFAGVDVT+EPIPVLPTV
Sbjct: 337 MTMEIREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTV 396
Query: 404 HYNMGGIPTNYKGQVLT-HVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGR 462
HYNMGGIPTNY G+V+T + D ++ GL AAGEA+C+SVHGANRLGANSLLD+VVFGR
Sbjct: 397 HYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGR 456
Query: 463 ACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAV 522
ACA +AE KPG KP +AGE ++A LD +R+A G + T+ +RL MQ+ MQ AAV
Sbjct: 457 ACANRVAEIAKPGEKQKPLPKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAV 516
Query: 523 FRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENR 582
FRTQETL+EGC + + +KV DRSLIWN+DL+ETLEL+NL+INA TM +AE R
Sbjct: 517 FRTQETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEAR 576
Query: 583 KESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVI 642
KESRGAHAREDF R D E+W KHTL + GKV++ YRPV
Sbjct: 577 KESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--EGKVRLDYRPVH 617
Query: 643 DKTLDAKECATIAPAIRSY 661
TLD E T P R Y
Sbjct: 618 MNTLD-DEVETFPPKARVY 635
>gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein
subunit, E. coli/mitochondrial subgroup. Succinate
dehydrogenase and fumarate reductase are homologous
enzymes reversible in principle but favored under
different circumstances. This model represents a
narrowly defined clade of the succinate dehydrogenase
flavoprotein subunit as found in mitochondria, in
Rickettsia, in E. coli and other Proteobacteria, and in
a few other lineages. However, This model excludes all
known fumarate reductases. It also excludes putative
succinate dehydrogenases that appear to diverged before
the split between E. coli succinate dehydrogenase and
fumarate reductase [Energy metabolism, TCA cycle].
Length = 565
Score = 966 bits (2498), Expect = 0.0
Identities = 391/582 (67%), Positives = 448/582 (76%), Gaps = 20/582 (3%)
Query: 80 EGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYM 139
G TA +TKLFPTRSHTVAAQGGI+AALGNMEED+W WHMYDTVKGSDWLGDQDAI YM
Sbjct: 4 GGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYM 63
Query: 140 TREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLH 199
++AP+AV+ELE+ GMPFSRT DGKIYQR FGG + +GKGG A R CA ADRTGH++LH
Sbjct: 64 CKQAPEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILH 123
Query: 200 TLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259
TLY Q+L+ D ++F EYFALDL++E+GEC+GVIA CLE G IHRF A VLATGGYGR
Sbjct: 124 TLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183
Query: 260 YFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSE 319
YFS T+AHT TGDGT M++RAGLP +D+EFVQFHPTGI GAGCLITEGCRGEGG LIN+
Sbjct: 184 YFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLITEGCRGEGGILINAN 243
Query: 320 GERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPG 379
GERFMERYAP AKDLASRDVVSRSMT+EIREGRGVGP+KDHVYL L HL PE L RLPG
Sbjct: 244 GERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPG 303
Query: 380 ISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEAS 439
ISETA FAGVD ++PIPVLPTVHYNMGGIPTNY GQVL NG D+I+ GLYAAGEA+
Sbjct: 304 ISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAA 363
Query: 440 CSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHA 499
C SVHGANRLG NSLLDLVVFGRA + AE KPG+ +KP NAGE SV LD +R A
Sbjct: 364 CVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAGEESVMRLDKLRFA 423
Query: 500 KGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDL 559
G A LRL +Q++MQ +A VFRT E LQ+G K++AL + ++K+ D+S +WNTDL
Sbjct: 424 TGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSKVWNTDL 483
Query: 560 VETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHW 619
VE LELQNL+ A T +AE RKESRGAHAREDF R D E+W
Sbjct: 484 VEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDD-----------------ENW 526
Query: 620 RKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
KHTL+ VD+NTGKV + Y+PVI K L A P R Y
Sbjct: 527 LKHTLSYVDINTGKVLLSYKPVIFKPLTV---ADFEPKKRVY 565
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 763 bits (1971), Expect = 0.0
Identities = 294/562 (52%), Positives = 370/562 (65%), Gaps = 36/562 (6%)
Query: 83 KTAVITKLFPTRSHTVAAQGGINAALGNMEE-DDWHWHMYDTVKGSDWLGDQDAIHYMTR 141
TAVI+K++PTRSHTVAAQGG+ AALGN++ D W WH YDTVKGSD+L DQDA+ YM +
Sbjct: 1 NTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEYMCQ 60
Query: 142 EAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTL 201
EAPKA++ELE++G+PFSRT DG+I QR FGG S R C AD+TGH+LLHTL
Sbjct: 61 EAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKD--------RTCYAADKTGHALLHTL 112
Query: 202 YGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYF 261
Y Q L+ ++F EYFALDLI ++G +GV+A L+ G I F A VLATGGYGR Y
Sbjct: 113 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 172
Query: 262 SCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGE 321
+ T+AH TGDG AM RAG+P +D+EFVQFHPTG+Y +G LITEGCRGEGGYL+N GE
Sbjct: 173 TTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGILITEGCRGEGGYLVNKNGE 232
Query: 322 RFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPD-KDHVYLQLHHLPPEDLHQRLPGI 380
RFMERYAP +LA RDVVSR+M EIREGRGVG D+VYL L HL E + +RLP I
Sbjct: 233 RFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEKIEERLPQI 292
Query: 381 SETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASC 440
E A FAGVD +EPIPV PT HY+MGGIPT+ + I+ GL+AAGE +C
Sbjct: 293 RELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDVICE-------TRSIVKGLFAAGECAC 345
Query: 441 SSVHGANRLGANSLLDLVVFGRACAKTIAEE-NKPGAPIKPFAANAGESSVANLDWVRHA 499
SVHGANRLG NSLL+LVVFGR + AE K G P A ++ A +D +
Sbjct: 346 VSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVER 405
Query: 500 KGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDL 559
G A +R + TM +FRT+E L++ +++ L + ++++ D+S ++NTDL
Sbjct: 406 NGGERVAKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRERYKNVRINDKSKVFNTDL 465
Query: 560 VETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHW 619
+E LEL N++ A A NRKESRGAHARED+ R D E+W
Sbjct: 466 LEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDD-----------------ENW 508
Query: 620 RKHTLTDVDVNTGKVKIYYRPV 641
KHTL D N G ++ Y+PV
Sbjct: 509 LKHTLAYYD-NPGTPRLEYKPV 529
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 705 bits (1821), Expect = 0.0
Identities = 287/600 (47%), Positives = 375/600 (62%), Gaps = 29/600 (4%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDW 116
H++D V+VGAGGAG+RAA +TAV+TKL+PTRSHT AAQGG+ AAL N+EED+W
Sbjct: 4 HRYDVVIVGAGGAGMRAAI-EAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNW 62
Query: 117 HWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLK 176
WH +DTVKG D+L DQDA M +EA AV++LE G+PF+RT +GKI QR FGG +
Sbjct: 63 EWHTFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRD 122
Query: 177 YGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIEN----GECKGVI 232
+GK R C ADRTGH +L TLY +++ +F E++ LDL++ GV+
Sbjct: 123 HGKA-PVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVV 181
Query: 233 ALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292
A L G IH F+A V ATGG GR Y + ++AHT TGDG ++ R GLP ED+EF QF
Sbjct: 182 AYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQF 241
Query: 293 HPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGR 352
HPTG+ G G LI+E RGEGG L N+EGERFMERYAP KDLA RD+V+RSM +E+REGR
Sbjct: 242 HPTGLAGLGILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGR 301
Query: 353 GVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPT 412
G GP+KD+VYL L HL E L +LP I+E A + GVD +EP+PV PT HY MGGIPT
Sbjct: 302 GAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPT 361
Query: 413 NYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEEN 472
G+VL ++ GLYAAGE +C SVHGANRLG NSLLD+ VFGR A A E
Sbjct: 362 TVDGEVLR---DNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRR-AGIAAAEY 417
Query: 473 KPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEG 532
GA N V ++ + G+ AD+R +Q++M A+VFRT+ETL++
Sbjct: 418 ARGADFVDLPENPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQA 477
Query: 533 CNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHARE 592
+ AL + + V D+ +NTDL+E +EL L+ A T+ A NRKESRG HARE
Sbjct: 478 LTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHARE 537
Query: 593 DFKVRVDELDYAKPLEGQVPKPIEEHWRKHTL--TDVDVNTGKVKIYYRPVIDKTLDAKE 650
D+ R D ++ KHT+ + +++ Y+PV+ + E
Sbjct: 538 DYPNRDD-----------------VNYMKHTMAYKEGTDLLSDIRLDYKPVVQTRYEPME 580
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 701 bits (1810), Expect = 0.0
Identities = 312/605 (51%), Positives = 396/605 (65%), Gaps = 26/605 (4%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWH 117
+FD V+VGAGG+G+RA+ L G AV++K+FPTRSHTVAAQGGI A+LGNM ED+WH
Sbjct: 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWH 71
Query: 118 WHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKY 177
+H YDT+KGSDWLGDQDAI +M REAP V ELE++GMPF R DG IYQR FGG + Y
Sbjct: 72 YHFYDTIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANY 131
Query: 178 GKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVIALCL 236
G+ R CA ADRTGH+LLHTLY Q++ +FVE+ ALDLI +G+ GV AL +
Sbjct: 132 GEK-PVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM 190
Query: 237 EDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTG 296
E G ++ A T+ ATGG GR + + T+A TGDG M +RAG+P +D+EF QFHPTG
Sbjct: 191 ETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHPTG 250
Query: 297 IYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGP 356
+ GAG LITEG RGEGG L N +GERFMERYAP KDLA RD VSRSM EI+EGRG GP
Sbjct: 251 VAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGP 310
Query: 357 DKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKG 416
+ DHV L L HL E + +RLP I E A+ FA VD +EPIPV+PT+HY MGGIPTN G
Sbjct: 311 NGDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHG 370
Query: 417 QVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGA 476
QV+ + ++G YA GE SC SVHGANRLG NSLLDLVVFGRA I + K
Sbjct: 371 QVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQH 430
Query: 477 PIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKM 536
KP A+A + S+A L + + D+ ++ TMQ +A VFRTQ L EG ++
Sbjct: 431 EHKPLPADAADFSLARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEGVEQI 490
Query: 537 AALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKV 596
AL + + ++ + D+S ++NT VE LE+ NL+ A TM +A RKESRGAHA D++
Sbjct: 491 LALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEH 550
Query: 597 RVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKECATIAP 656
R D E+W KHTL + N ++ Y+PV K L + ++ P
Sbjct: 551 RDD-----------------ENWLKHTLWYSEGN----RLDYKPVQMKPLTVE---SVPP 586
Query: 657 AIRSY 661
R++
Sbjct: 587 KARTF 591
>gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 570
Score = 692 bits (1788), Expect = 0.0
Identities = 317/595 (53%), Positives = 392/595 (65%), Gaps = 29/595 (4%)
Query: 71 LRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME-EDDWHWHMYDTVKGSDW 129
+RAA L G KTAV+TK+FPTRSHTV+AQGGI A+ + + DDW WHMYDTVKGSD+
Sbjct: 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDY 60
Query: 130 LGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAV 189
+GDQDAI YM P+AV ELE+ G+PFSRT G+IYQR FGGQS +GKGGQA R CA
Sbjct: 61 IGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAA 120
Query: 190 ADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVIALCLEDGSIHRFNANN 248
ADRTGH+LLHTLY +L+ + E++A+DL+ ++G GVIA+C+E G +
Sbjct: 121 ADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKA 180
Query: 249 TVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGC 308
TVLATGG GR Y S T+A TGDG M RAG+P +D+E QFHPTGI GAG L+TEGC
Sbjct: 181 TVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240
Query: 309 RGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHL 368
RGEGGYLIN GERFMERYAP AKDLA RDVV+RSM EI G G GP+KDHV L+L HL
Sbjct: 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHL 300
Query: 369 PPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTH-VNGQDK 427
E LH RLPGI E + FA VD PIPV+PT HY MGG+ TN GQ +T NG D+
Sbjct: 301 GEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQ 360
Query: 428 IIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKPFAANAGE 487
II GL+A GE +C SVHGANRLG NSLLDLVVFGRA + + K G + + + +
Sbjct: 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIEYRDASESDID 420
Query: 488 SSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLK 547
+++A L+ + G A LR +Q MQ Y VFRT E +Q+G ++A L + +A++K
Sbjct: 421 AALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480
Query: 548 VFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPL 607
+ D+S +NT +E LELQNL+ A T AAE RKESRGAHAREDF+ R D
Sbjct: 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDD-------- 532
Query: 608 EGQVPKPIEEHWRKHTLTD-VDVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
E+W HTL + GK + + P KT+ A E P +R+Y
Sbjct: 533 ---------ENWLCHTLYFPGEKRVGKRAVNFAP---KTVPAFE-----PKVRTY 570
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 687 bits (1774), Expect = 0.0
Identities = 296/547 (54%), Positives = 373/547 (68%), Gaps = 4/547 (0%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDW 116
+FDAVV+GAGGAG+RAA + G A+++K+FPTRSHTV+AQGGI ALGN ED+W
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNW 65
Query: 117 HWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLK 176
WHMYDTVKGSD++GDQDAI YM + P+A++ELE+ G+PFSR DG+IYQR FGGQS
Sbjct: 66 EWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKN 125
Query: 177 YGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVIALC 235
+G G QA R A ADRTGH+LLHTLY Q+L+ F E++ALDL+ ++G G A+C
Sbjct: 126 FG-GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAIC 184
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295
+E G + F A TVLATGG GR Y S T+AH TGDG M RAG+P +D+E QFHPT
Sbjct: 185 IETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT 244
Query: 296 GIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGV- 354
GI GAG L+TEGCRGEGGYL+N GERFMERYAP AKDLA RDVV+RS+ IEIREGRG
Sbjct: 245 GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304
Query: 355 GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNY 414
GP H L+L HL E L RLPGI E + FA VD +EPIPV+PT HY MGGIPT
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364
Query: 415 KGQVLT-HVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENK 473
GQ LT + G+D ++ GL+A GE +C SVHGANRLG NSLLDLVVFGRA + E
Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424
Query: 474 PGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGC 533
++ + + E+S+A L+ + + +R +Q+ MQ +VFR + + +G
Sbjct: 425 EQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKGL 484
Query: 534 NKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHARED 593
++ + + L + ++ D S +NT +E LEL NLM A T +A R ESRGAH+R D
Sbjct: 485 EELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFD 544
Query: 594 FKVRVDE 600
F R DE
Sbjct: 545 FPDRDDE 551
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 669 bits (1727), Expect = 0.0
Identities = 301/595 (50%), Positives = 367/595 (61%), Gaps = 46/595 (7%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM---E 112
H+FD VV+G GGAGLRAA G K A+++K P R HTVAAQGGINAALGN E
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVE 63
Query: 113 EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGG 172
D H YDTVKG D LGDQDA+ EAP+AV ELE +G+PFSRT DG+IYQR FGG
Sbjct: 64 GDSPELHFYDTVKGGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG 123
Query: 173 QSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDC-NYFVEYFALDLIIE-NGECKG 230
S R C AD+TGH LLHTLY Q L++ F EYF LDL+++ G G
Sbjct: 124 HS--------KPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAG 175
Query: 231 VIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290
V+A L G ++ F A +LATGG GR Y T+AH TGDG AM RAG P D+EFV
Sbjct: 176 VVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFV 235
Query: 291 QFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMER--YAPVAKDLASRDVVSRSMTIEI 348
QFHPTG+ G+G LITE RGEGG L+N +GERFMER YAP K+LA RDVVSR++ +EI
Sbjct: 236 QFHPTGLVGSGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEI 295
Query: 349 REGRGV-GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNM 407
REGRGV GP D+VYL L HL E+L +RLPGI E A FAG+D +EPIPV PTVHY M
Sbjct: 296 REGRGVDGPGGDYVYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTM 355
Query: 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKT 467
GGIPTN G+V T + GL+AAGEA+ S HGANRLG NSLLDLVVFGR +
Sbjct: 356 GGIPTNT-GRVETKIP-------GLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEA 407
Query: 468 IAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
AE K + P A+A E+ D + GD A +R +Q+ M +FR +E
Sbjct: 408 AAEYAKEKSGSPP--ASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNEE 465
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
L++ K+ L + L ++V D+S ++NTDL + LEL N++ A +A R ESRG
Sbjct: 466 GLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRG 525
Query: 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVI 642
AH RED+ R D E+W KHTL D K ++ Y PV
Sbjct: 526 AHYREDYPERDD-----------------ENWLKHTLASYD---KKPRLEYEPVK 560
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 569 bits (1468), Expect = 0.0
Identities = 258/603 (42%), Positives = 349/603 (57%), Gaps = 43/603 (7%)
Query: 58 QFDAVVVGAGGAGLRAAFGL--VAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME-ED 114
+ D V+VG G AG RAA + + AV+ K P RSH+VAAQGGI A+L N++ ED
Sbjct: 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPED 62
Query: 115 DWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQS 174
W H +DTVKGSD+L DQDA+ +T+EAP +I+LE+ G+ FSR DG+I QRAFGG S
Sbjct: 63 SWEAHAFDTVKGSDYLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHS 122
Query: 175 LKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIAL 234
R C AD+TGH++LH L RY + E++ + LI+E+ + KGV+
Sbjct: 123 HN--------RTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMY 174
Query: 235 CLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294
+ DG + A + ATGGYGR + + ++ + TGDG AM + AGLP ED+EFVQFHP
Sbjct: 175 HIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHP 234
Query: 295 TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGV 354
TG+Y G LI+E RGEG YLINSEG+RFM YAP +LA RD+ SR++T+EIR GRG+
Sbjct: 235 TGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGI 294
Query: 355 GPD----KDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGI 410
PD VYL L H+ E + R+P E A GVD EP+PV PTVHY MGGI
Sbjct: 295 NPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGI 354
Query: 411 PTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAE 470
P N G+V D ++ G +AAGE +C SVHGANRLG+NSLL+ VV+GR IAE
Sbjct: 355 PVNTDGRVR---RSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAE 411
Query: 471 --ENKPGAPIKP-FAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
+ + + + + L G LR Q M + VFRT+E
Sbjct: 412 YVQGRKLPEVDEQRYLKEAKQRIQAL---LDQSGTYRINQLRQQFQDCMTDHCGVFRTEE 468
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
+QEG K+ L + + + D+ WNT+L+E LEL++LM+ + +A NR+ESRG
Sbjct: 469 IMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRG 528
Query: 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLD 647
AH+RED+ R D +++ KHTL + I Y PV+ +
Sbjct: 529 AHSREDYPQRDD-----------------QNFLKHTLAYYS--PAGIDIQYMPVVITMFE 569
Query: 648 AKE 650
+E
Sbjct: 570 PQE 572
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 539 bits (1390), Expect = 0.0
Identities = 255/598 (42%), Positives = 348/598 (58%), Gaps = 44/598 (7%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEG---FKTAVITKLFPTRSHTVAAQGGINAALGNMEED 114
++D V+VG+G AGLRAA AV++K P RSH+V+A+GG A L + D
Sbjct: 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGD 64
Query: 115 DWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQS 174
+ H YDTVKGSD+L DQDA+ REAP+ + L+++G+P+SR DG+I QR FGG S
Sbjct: 65 SFDLHAYDTVKGSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMS 124
Query: 175 LKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYD-CNYFVEYFALDLIIENGECKGVIA 233
R AD+TG ++HTLY ++LR+D +++ E+F LI+ENG KGV A
Sbjct: 125 FP--------RTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTA 176
Query: 234 LCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293
+ L+ G F A ++ATGG GR Y T AH+ TGDG A+ RAG+P +D+EFVQFH
Sbjct: 177 IDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFH 236
Query: 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRG 353
PTG+ +G LITE RGEGGYLIN EGERFM+RYAP +LA RDVVSR++ EI EGRG
Sbjct: 237 PTGLVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRG 296
Query: 354 VGPDKD--HVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIP 411
+ +V L L HL E +++RLP I E A +AG+D EPIPV P HY MGGI
Sbjct: 297 FKHESGLCYVGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIH 356
Query: 412 TNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGR----ACAKT 467
T+ G+VLT + + GL+AAGEA+ SVHGANRLG+NS + +V+GR A+
Sbjct: 357 TDVYGRVLTA---DGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEY 413
Query: 468 IAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
+ P +P++ A E + D + +G + ++R + M +FR +
Sbjct: 414 ALKRPAPSSPVEKLAEKE-EKRI--FDKLLKKEGGEPSYEIRRELNDIMDKNFGIFRDES 470
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
L E K+ L + ++++ D+S I+NTDL + LEL ++ A A R ESRG
Sbjct: 471 GLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRG 530
Query: 588 AHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPV-IDK 644
AH R D+ PK +E+W KHTL G K+ Y PV I K
Sbjct: 531 AHYRLDY-----------------PKRDDENWLKHTLAYYT--GGGPKVTYTPVTITK 569
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 477 bits (1231), Expect = e-162
Identities = 235/612 (38%), Positives = 339/612 (55%), Gaps = 58/612 (9%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAE---GFKTAVITKLFPTRSHTVAAQGGINAALGNMEED 114
Q D ++GAGGAGLRAA AE K A+I+K++P RSHTVAA+GG +A + D
Sbjct: 4 QADLAIIGAGGAGLRAAIA-AAEANPNLKIALISKVYPMRSHTVAAEGG--SAAVAQDHD 60
Query: 115 DWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQS 174
+ +H +DTV G DWL +QD + Y P + +LE +G P+SR DG + R FGG
Sbjct: 61 SFDYHFHDTVAGGDWLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMK 120
Query: 175 LKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIA 233
++ R AD+TG +LHTL+ SL+Y F E+F LD+++++G +G++A
Sbjct: 121 IE--------RTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVA 172
Query: 234 LCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293
+ + +G++ + AN V+ATGG GR Y T+ TGDG M R G+P D+EFVQ+H
Sbjct: 173 MNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYH 232
Query: 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYA-----PVAK------DLASRDVVSR 342
PTG+ G+G L+TEGCRGEGG L+N +G R+++ Y P+ + +L RD VS+
Sbjct: 233 PTGLPGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQ 292
Query: 343 SMTIEIREGRGV-GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLP 401
+ E R+G + P D VYL L HL + LH+RLP I E A + GVD +EPIPV P
Sbjct: 293 AFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRP 352
Query: 402 TVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFG 461
T HY MGGI T+ + I GL+A GE S +HGANRLG+NSL +LVVFG
Sbjct: 353 TAHYTMGGIETDQNCETR---------IKGLFAVGECSSVGLHGANRLGSNSLAELVVFG 403
Query: 462 RACAKTIAE--ENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTY 519
R + AE A A L + + +G A +R M +M+
Sbjct: 404 RVAGEQAAERAATAGPGNEAALDAQA-ADVEQRLKALVNQEGGENWAKIRDEMGLSMEEG 462
Query: 520 AAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTM-FA 578
++RT E +Q+ +K+A L + +++ D S ++NTDL+ T+EL ++ + M +
Sbjct: 463 CGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIEL-GYGLDVAECMAHS 521
Query: 579 AENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYY 638
A RKESRGAH R L+ + + ++ KHTL + + G +I Y
Sbjct: 522 ALARKESRGAHQR---------------LDEGCTERDDVNFLKHTLAFYNAD-GTPRIEY 565
Query: 639 RPV-IDKTLDAK 649
V I K+ AK
Sbjct: 566 SDVKITKSPPAK 577
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 439 bits (1131), Expect = e-147
Identities = 231/591 (39%), Positives = 345/591 (58%), Gaps = 48/591 (8%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAAL-GNMEEDDW 116
++DAVV+G G AGL +A + + GFK AVI+K+FPTRSH+ AA+GGI A + GN + +D
Sbjct: 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDN 64
Query: 117 HWHM-YDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSL 175
+M YDTVKG D+L DQDA ++ ++ + V+ LE +G F+R DG++ R FGGQ+
Sbjct: 65 PDYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTY 124
Query: 176 KYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALC 235
R V D+TG +LLHTL+ ++ + +++ E+F+LDL+ +N + G++A+
Sbjct: 125 P--------RTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQ 176
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295
++ + F VLATGG G Y T+++ TGDG + RAG +D EFVQFHPT
Sbjct: 177 MKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPT 236
Query: 296 GIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVG 355
+Y + LI+E RGEGG L N +GERFM +YAP DLA RD+VSR++ EIREGRG
Sbjct: 237 ALYPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGF- 295
Query: 356 PDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 415
+V L L HL E + +RL E A FAGVD EPIPV P HY MGGI +
Sbjct: 296 -PGGYVGLDLTHLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVD-- 352
Query: 416 GQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAE----- 470
++G++ I GL++AGEA+C SVHGANRLG+NSLLD +VFG+ +T+ +
Sbjct: 353 ------IDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKSN 406
Query: 471 ENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQ 530
P + + A + + +V+ G + + ++ TM Y ++R + L
Sbjct: 407 PGNPTSNYEKEAEKVVDDA---YKFVKSESG-VHFGQILEKLRDTMWDYVGIYRDEGGLL 462
Query: 531 EGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHA 590
+++ L ++++ V D+S ++NT+ LEL+N++ A+ +A RKESRGAH
Sbjct: 463 NAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHY 522
Query: 591 REDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPV 641
R D+ P + +W KHT+ + NT V++ ++PV
Sbjct: 523 RTDY-----------------PDRDDNNWLKHTIAYLRGNT--VEVTFKPV 554
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 429 bits (1104), Expect = e-143
Identities = 235/610 (38%), Positives = 329/610 (53%), Gaps = 53/610 (8%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEG---FKTAVITKLFPTRSHTVAAQGGINAALGNMEED 114
Q D V+GAGGAGLRAA AE A+I+K++P RSHTVAA+GG A G ++D
Sbjct: 3 QHDIAVIGAGGAGLRAAIA-AAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTG--DDD 59
Query: 115 DWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQS 174
H +DTV G DWL +QD + Y EAPK +++LE++G P+SR DG++ R FGG
Sbjct: 60 SLDEHFHDTVSGGDWLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMK 119
Query: 175 LKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIA 233
+ R AD+TG +LHTL+ SL Y + E+F DL++++G G++A
Sbjct: 120 KE--------RTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVA 171
Query: 234 LCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293
+ + +G + A+ VLATGG GR Y T+ TGDG AM R G+P D+EFVQ+H
Sbjct: 172 IEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYH 231
Query: 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERY-----APVAK------DLASRDVVSR 342
PTG+ G G L+TEGCRGEGG L+N +G R+++ Y PV + +L RD VS+
Sbjct: 232 PTGLPGTGILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQ 291
Query: 343 SMTIEIREGRGVG-PDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLP 401
+ E +G + P D VYL L HL + L +RLP I E A + VD +EPIPV P
Sbjct: 292 AFWHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRP 351
Query: 402 TVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFG 461
TVHY MGGI T+ + I GL+A GE + +HGANRLG+NSL +LVVFG
Sbjct: 352 TVHYTMGGIETDINCETR---------IKGLFAVGECASVGLHGANRLGSNSLAELVVFG 402
Query: 462 RACAKTIAEENKPGAPIKPFAANAGESSVAN-LDWVRHAKGDITTADLRLTMQKTMQTYA 520
R + AE A A +V L+ + G AD+R M TM++
Sbjct: 403 RRAGEAAAERAARHQKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATMESGC 462
Query: 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAE 580
++R +Q+ +K+A L + + D S ++NTDL+ +EL + A + +A
Sbjct: 463 GIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSAL 522
Query: 581 NRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRP 640
RKESRGAH R D + + H+ KHTL + + G +++ Y P
Sbjct: 523 RRKESRGAHQRLDEG---------------CTERDDVHFLKHTLAFRESD-GTLRVGYSP 566
Query: 641 VIDKTLDAKE 650
V E
Sbjct: 567 VKITRWPPGE 576
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 406 bits (1046), Expect = e-135
Identities = 216/552 (39%), Positives = 294/552 (53%), Gaps = 46/552 (8%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITK--LFPTRSHTVAAQGGINAALGNMEEDDWH 117
D +++G+GGAG RAA + AE K VI LF TV A+GG NA L ED +
Sbjct: 9 DVLIIGSGGAGARAA--IEAERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFE 64
Query: 118 WHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKY 177
H DT+KG +L D + + +EAPK + +LE +G F RT DG+I QR FGGQS
Sbjct: 65 KHFEDTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFN- 123
Query: 178 GKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVIALCL 236
R C DRTGH ++ L ++ E A+ LI+ EN E G I L L
Sbjct: 124 -------RTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDL 176
Query: 237 EDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTG 296
+G I A T+LATGG G+ Y ++ TGDG A+ RAG D+E VQFHPTG
Sbjct: 177 RNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTG 236
Query: 297 I----YGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGR 352
+ G G L+TE RGEGG L N GERFM+RY P +L++RDVV+R++ EI+EGR
Sbjct: 237 MVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGR 296
Query: 353 GVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPT 412
G + VYL + HLP E + ++L + E + GVD+ +EP+ V PT H+ MGGI
Sbjct: 297 GT--NHGGVYLDVTHLPDEVIEEKLETMLEQFLDV-GVDIRKEPMEVAPTAHHFMGGIRI 353
Query: 413 NYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGR---ACAKTIA 469
N + I GL+A GE VHGANRLG N+L D VFG A A
Sbjct: 354 NEDCET---------NIPGLFACGEV-AGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403
Query: 470 EENKPGAPIKPFAANAGESSVANL-DWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQET 528
E N+ + E +A + ++ G I DL ++KTM Y ++ R ++
Sbjct: 404 ENNEFKKVN-----RSVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKG 458
Query: 529 LQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGA 588
L++ ++ L + L LKV D + LEL+N+++ A + +A RKESRGA
Sbjct: 459 LKKALEEINELKEKLKDLKVNGIV-----DFNKALELENMILVAELVIKSALLRKESRGA 513
Query: 589 HAREDFKVRVDE 600
H RED+ DE
Sbjct: 514 HYREDYPETNDE 525
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 410 bits (1056), Expect = e-135
Identities = 207/572 (36%), Positives = 295/572 (51%), Gaps = 52/572 (9%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN--MEE-DDW 116
DA+V+GAG AGLR A G T V++ + RSH+ AAQGG+ A+LGN E D+
Sbjct: 7 DALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNE 66
Query: 117 HWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGK------------ 164
H DTVKGSDW DQ+ APKAV EL +G+P++R T G
Sbjct: 67 DVHFADTVKGSDWGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTI 126
Query: 165 ---------IYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215
I R FGG K+ R C AD TGH++L+ + ++++
Sbjct: 127 TEKEEAHGLINARDFGGTK-KW-------RTCYTADGTGHTMLYAVDNEAIKLGVPVHDR 178
Query: 216 YFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTA 275
A+ LI + C G + CL G + + A T++ATGGYGR Y T+A C G G A
Sbjct: 179 KEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGAA 238
Query: 276 MISRAGL-PNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDL 334
+ G+ P ++E VQFHPT I +G L+TEGCRG+GG L + +G RFM Y P K+L
Sbjct: 239 IALETGVAPLGNMEAVQFHPTAIVPSGILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKEL 298
Query: 335 ASRDVVSRSMTIEIREGRGV-GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVT 393
ASRDVVSR MT IR+G+GV P H++L + L + + L + E F G+D
Sbjct: 299 ASRDVVSRRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPA 358
Query: 394 REPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANS 453
++ IPV PT HY+MGGI TN G+ + GL++AGEA+C +HG NRLG NS
Sbjct: 359 KDWIPVRPTQHYSMGGIRTNPTGESYG--------LKGLFSAGEAACWDMHGFNRLGGNS 410
Query: 454 LLDLVVFGRACAKTIAE------ENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTAD 507
L + VV G K +A+ A ++ F + + L +G +
Sbjct: 411 LAETVVAGMIVGKYVADFCLGNELEIDTALVEKF-VKKQQDRIDEL---IAGEGKENVFE 466
Query: 508 LRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQN 567
++ MQ+ M +FR L++ ++ L + ++ + + N +L E L +
Sbjct: 467 IKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPR 526
Query: 568 LMINAIQTMFAAENRKESRGAHAREDFKVRVD 599
++ A+ + A R ESRGAHARED+ R D
Sbjct: 527 MLKLALCVAYGALARTESRGAHAREDYPKRND 558
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 387 bits (997), Expect = e-129
Identities = 175/423 (41%), Positives = 213/423 (50%), Gaps = 50/423 (11%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN---MEEDDW 116
D VV+G+G AGL AA G K AV+ K P T + GGI+A D
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSP 60
Query: 117 HWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSR-TTDGKIYQRAFGGQSL 175
H DT+KG D L D + AP+AV LE G+PFSR T DG I R GG S
Sbjct: 61 DLHPTDTLKGLDELADHPYVEAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSA 120
Query: 176 KYGKGGQAHRCCAVADR------TGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECK 229
+ VADR TGH+LL L +L+ ++ + A DLI+E+G
Sbjct: 121 TW------RTPHDVADRRRGTLGTGHALLARLLEGALKRGIDFQPRHPADDLIVEDGRVT 174
Query: 230 GVIALCLEDGSIHRFNANN-TVLATGGYGR---------AYFSCTSAHTCTGDGTAMISR 279
GV+ +G R A +LATGG+GR Y T TGDG A+ R
Sbjct: 175 GVVVENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALR 234
Query: 280 AGLPNED--LEFVQFHPTGIYG----AGCLITEGCRGEGGYLINSEGERFMERYAPVAKD 333
AG D +EFVQFHPT + G +G LI RGEGG L+N +G RFM +
Sbjct: 235 AGAALTDDLMEFVQFHPTSLPGIRLGSGLLIE-ALRGEGGILVNDDGRRFM-------NE 286
Query: 334 LASRDVVSRSMT-IEIREGRGVGPDKDHVYLQLHH-LPPEDLHQRLPGISETAMIFAGVD 391
LASRDVVSR++T EI EGRG HVYL L E L LP +E A+ VD
Sbjct: 287 LASRDVVSRAITRNEIDEGRG-----AHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVD 341
Query: 392 VTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGA 451
PIPV P HY MGG+ T+ G+VL + I GLYAAGE +C VHGANRLG
Sbjct: 342 PYDRPIPVFPAQHYTMGGVRTDENGRVLDA---DGQPIPGLYAAGEVACGGVHGANRLGG 398
Query: 452 NSL 454
NSL
Sbjct: 399 NSL 401
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 363 bits (934), Expect = e-118
Identities = 196/547 (35%), Positives = 268/547 (48%), Gaps = 71/547 (12%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWH 119
D +++G+G AGL AA L A F+ V+TK S + AQGGI AAL E+D H
Sbjct: 9 DVLIIGSGLAGLTAALSL-APSFRVTVLTKGPLGESSSYWAQGGIAAALS--EDDSPELH 65
Query: 120 MYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGK 179
+ DT+ L D++A+ ++ EAP+A+ L + G+PF R DG L +
Sbjct: 66 VADTLAAGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDG----------RLHLTR 115
Query: 180 GGQAH---RCCAVADRTGHSLLHTLYGQSLRYDCNYFVE-YFALDLIIENGEC-KGVIAL 234
G H R AD TG ++ L + +E ALDLIIE+G GV+ L
Sbjct: 116 EG-GHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVL 174
Query: 235 CLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294
+G + F A VLATGG G Y T+ TGDG AM RAG DLEFVQFHP
Sbjct: 175 N-RNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHP 233
Query: 295 TGIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREG 351
T +Y LI+E RGEG L+N +GERFM Y P +LA RDVV+R++ E++ G
Sbjct: 234 TALYIPQRRAFLISEAVRGEGAILVNEDGERFMPDYHPRG-ELAPRDVVARAIDAEMKRG 292
Query: 352 RGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIP 411
V+L + H+P + +R P I + AG+D TREPIPV+P HY MGGI
Sbjct: 293 GA------DVFLDISHIPGDFFERRFPTIYAACLK-AGIDPTREPIPVVPAAHYTMGGIA 345
Query: 412 TNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE 471
+ G+ T I GLYA GE +C+ +HGANRL +NSLL+ +VFG+ A+ IA
Sbjct: 346 VDANGR--TS-------IPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR 396
Query: 472 NKPGAPIKPFAANAG----ESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQE 527
AP + E+ + D +++ M Y + RT +
Sbjct: 397 L-APAPREAPTLPVRDDYEENVLLAHDRHE--------------LRRLMWRYVGIVRTAK 441
Query: 528 TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRG 587
L+ ++ L ++ F S N +L L AA R ESRG
Sbjct: 442 GLERAIRRLEPLQQENDEYANFRVS---NRNLALVALL---------IARAALLRTESRG 489
Query: 588 AHAREDF 594
AH R D+
Sbjct: 490 AHFRLDY 496
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 352 bits (906), Expect = e-113
Identities = 206/586 (35%), Positives = 292/586 (49%), Gaps = 71/586 (12%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM-EEDD 115
H +D VV+GAGGAGLRAA G + AV+ K ++HTV A+GG AA+GN+ +D+
Sbjct: 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDN 66
Query: 116 WHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSL 175
W H DT++G +L + +EAP V ELE YG F RT DG+I QR FGG +
Sbjct: 67 WQVHFRDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHT- 125
Query: 176 KYGKGGQAHRCCAVADRTGHSLLHTL-----------YGQSLRYDCN--YFVEYFALDLI 222
Y + AH V DRTG L+ TL + + Y+ F E +L+
Sbjct: 126 -YPR--LAH----VGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELL 178
Query: 223 IENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGL 282
+ G G E G F A VLATGG G+++ +++ TGDG A+ RAG
Sbjct: 179 KDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGA 238
Query: 283 PNEDLEFVQFHPTGIYGA----GCLITEGCRGEGGYLINSEGERFMERYAP-VAK----- 332
++EFVQFHPTG+ G L+TEG RG+GG L NSEG+RFM Y P V K
Sbjct: 239 TLINMEFVQFHPTGMVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAE 298
Query: 333 -------------------DLASRDVVSRSMTIEIREGRGVGPDKDH--VYLQLH-HLPP 370
+L RD V+R++ E++ GRG H VYL + LP
Sbjct: 299 TEEEADRWYKDNDNNRRPPELLPRDEVARAINSEVKAGRG----SPHGGVYLDIASRLPA 354
Query: 371 EDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIH 430
E++ +RLP + A VD+T+EP+ V PT HY MGG+ + T +
Sbjct: 355 EEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGVEVDPDTGAAT--------VP 406
Query: 431 GLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAE--ENKPGAPIKPFAANAGES 488
GL+AAGE + +HG+NRLG NSL DL+VFGR A+ P A +
Sbjct: 407 GLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAA 465
Query: 489 SVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKV 548
A + R A + L +Q+TM + R ++ +++ K+A L + A++ V
Sbjct: 466 REALAPFERPAGAENPYT-LHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSV 524
Query: 549 FDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDF 594
+ +N L+L+N+++ + AA R ESRG H R+D
Sbjct: 525 -EGHRQYNPGWHLALDLRNMLLVSECVARAALERTESRGGHTRDDH 569
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 323 bits (831), Expect = e-102
Identities = 200/592 (33%), Positives = 286/592 (48%), Gaps = 74/592 (12%)
Query: 39 GDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTV 98
G + S + + FD +V+G+G AGLR A VAE A+ITK P S+T
Sbjct: 12 GAERASSASRLDDESTK--YFDFLVIGSGIAGLRYALE-VAEYGTVAIITKDEPHESNTN 68
Query: 99 AAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFS 158
AQGG++A L D HM DT+ +L D++ + + E P+ V EL G F
Sbjct: 69 YAQGGVSAVLD--PSDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAMGASFD 126
Query: 159 RTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCN--YFVEY 216
DG ++ GG S HR AD TG + L ++++ D N +F +
Sbjct: 127 HGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALL-EAVKNDPNITFFEHH 177
Query: 217 FALDLII-ENGE---CKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGD 272
FA+DL+ ++G C G L G + RF + T+LA+GG G Y S T+ TGD
Sbjct: 178 FAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGD 237
Query: 273 GTAMISRAGLPNEDLEFVQFHPTGIYGAGC------------LITEGCRGEGGYLINSEG 320
G AM RA ++EFVQFHPT + G LITE RG+GG L N G
Sbjct: 238 GIAMAHRAQAVVSNMEFVQFHPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAG 297
Query: 321 ERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGI 380
ERFM Y A +LA RDVV+RS+ ++++ + +V L + H P E++ P I
Sbjct: 298 ERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EKYVLLDISHKPREEILSHFPNI 351
Query: 381 SETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASC 440
+ + G+D+T++PIPV+P HY GG+ T +G+ T+V GLYAAGE +C
Sbjct: 352 AAECLKR-GLDITKQPIPVVPAAHYMCGGVRTGLQGE--TNVQ-------GLYAAGEVAC 401
Query: 441 SSVHGANRLGANSLLDLVVFG-RACAKTIA----------EENKPGAPIKPFAANAGESS 489
+ +HGANRL +NSLL+ +VF RA +I P+ P A A
Sbjct: 402 TGLHGANRLASNSLLEALVFARRAVQPSIDHMARALRDVSAAAAWARPVAPTAL-ADSVM 460
Query: 490 VANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVF 549
L+W TA +R +Q+ M Y + R+ E L+ K+ L A +
Sbjct: 461 DEILEW---------TAVVRKELQRIMWNYVGIVRSTERLETAERKLEELE---AEWEAI 508
Query: 550 DRSLIWNTDLV--ETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVD 599
W +V E E++NL A + +A RKESRG H D+ V+
Sbjct: 509 LFRHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPELVE 560
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 307 bits (789), Expect = 4e-97
Identities = 191/543 (35%), Positives = 269/543 (49%), Gaps = 65/543 (11%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWH 119
D +++G+G A L A L E + +ITK S++ AQGGI AA+ D + H
Sbjct: 5 DVIIIGSGIAALTVAKELCHE-YNVIIITKKTKRNSNSHLAQGGIAAAVA--TYDSPNDH 61
Query: 120 MYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGK 179
DT+ ++ A+ Y+ E PK + EL GMPF G L GK
Sbjct: 62 FEDTLVAGCHHNNERAVRYLVEEGPKEIQELIENGMPFDGDETGP----------LHLGK 111
Query: 180 GGQAHR----CCAVADRTGHSLLHTLYGQSLRYDCNYFVEY-FALDLIIENGECKGVIAL 234
G AHR A D TG +LL L + + + VE +DLIIENG C GV+
Sbjct: 112 EG-AHRKRRILHAGGDATGKNLLEHLLQELVPH--VTVVEQEMVIDLIIENGRCIGVLTK 168
Query: 235 CLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294
+G + R+ A+ VLA+GG G Y ++ T TGDG AM RAG DLEF+QFHP
Sbjct: 169 D-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHP 227
Query: 295 TGIYGAG-C--LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREG 351
T +Y G C L++E RGEG LIN +G RFM P+ DLA RDVV+R++ E+ G
Sbjct: 228 TMLYANGRCVGLVSEAVRGEGAVLINEDGRRFMMGIHPL-ADLAPRDVVARAIHEELLSG 286
Query: 352 RGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIP 411
+ VYL + + + +R P IS GVD+ + IPV+P H+ MGG+
Sbjct: 287 -------EKVYLNISSIQ--NFEERFPTISALCEK-NGVDIETKRIPVVPGAHFLMGGVK 336
Query: 412 TNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE 471
TN G+ I GLYA GE +C+ VHGANRL +NSLL+ +VFG+ A+ I +
Sbjct: 337 TNLDGET---------SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387
Query: 472 NKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQE 531
+ PFA + V N + T + +Q+ M Y + RT+++L E
Sbjct: 388 ATKP-RLNPFAEKEKKFIVLN---------HLPT---KEEIQEKMMKYVGIVRTEQSLSE 434
Query: 532 GCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAR 591
+ L V + L + E +EL +++ A + +A R ESRG H R
Sbjct: 435 -------AKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYR 487
Query: 592 EDF 594
D+
Sbjct: 488 SDY 490
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 303 bits (779), Expect = 3e-95
Identities = 191/594 (32%), Positives = 275/594 (46%), Gaps = 84/594 (14%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWH 117
QFD +VVG+G AGL AA L + + +ITK S + AQGGI AA+ +D
Sbjct: 9 QFDVLVVGSGAAGLYAALCLPSH-LRVGLITKDTLKTSASDWAQGGIAAAIA--PDDSPK 65
Query: 118 WHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKY 177
H DT+K L D +A+ ++ +AP+A+ L G+ F R A ++
Sbjct: 66 LHYEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVAFDRHGQ----HLALTLEA--- 118
Query: 178 GKGGQAHRCCAV---ADRTGHSLLHTLYGQSL-RYDCNYFVEYFALDLII--ENGECKGV 231
AH V AD TG +++ TL Q L R + + AL L + E G C+G+
Sbjct: 119 -----AHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGI 173
Query: 232 IALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQ 291
L G I A +LATGG G+ + T+ TGDG A+ RAG DLEF Q
Sbjct: 174 --SLLYQGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQ 231
Query: 292 FHPTGIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEI 348
FHPT + G LI+E RGEG +L++++G RF Y P A +LA RDVVSR++ +
Sbjct: 232 FHPTALTKPGAPRFLISEAVRGEGAHLVDAQGRRFAFDYHP-AGELAPRDVVSRAIFSHL 290
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMG 408
++ P HV+L L +P E + +R P I + G+DV +EPIPV P HY MG
Sbjct: 291 QK-TATDPATAHVWLDLRPIPAERIRRRFPNIIRVCQKW-GIDVFQEPIPVAPAAHYWMG 348
Query: 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAK-- 466
G+ T+ Q I GLYA GE + + VHGANRL +NSLL+ +VF A+
Sbjct: 349 GVVTDLNNQT---------SIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLE 399
Query: 467 -TIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRT 525
I P P F +A + + ++ +R + + + A + R
Sbjct: 400 LPIEPPASPDLPPISFIIDASQWKN-EQEQIQR---------IRQELPELVWQSAGICRE 449
Query: 526 QETLQEGCNKMAALYKDLAHLKV--------------FDRSLIWNTDLVETLELQNLMIN 571
+TL+ ++ + LA L + F+ L E +NL+
Sbjct: 450 ADTLERAIAQVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDA-EQQLRLWAETRNLLDI 508
Query: 572 AIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLT 625
A + +A R ESRG H R LDY + + W+ HTL
Sbjct: 509 AYLILKSALFRTESRGGHYR---------LDYPQT---------DPAWQVHTLV 544
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 299 bits (768), Expect = 2e-94
Identities = 180/549 (32%), Positives = 265/549 (48%), Gaps = 73/549 (13%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDW 116
H D VV+G+G AGL AA L A+ + V++K T ++ AQGGI A L E D
Sbjct: 1 HSCDVVVIGSGAAGLSAALAL-ADQGRVIVLSKAPVTEGNSFYAQGGIAAVL--AETDSI 57
Query: 117 HWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLK 176
H+ DT+ + D++A+ ++ +A AV L + G+ F R G GG S +
Sbjct: 58 DSHVEDTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYR 117
Query: 177 YGKGGQAHRCCAVADRTGHSLLHTLYGQSL-RYDCNYFVEYFALDLIIENGECKGVIALC 235
R AD TG ++ TL ++L + ALDL+IE G GV
Sbjct: 118 --------RILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGV--WV 167
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295
++ +A+ VLATGG G+ Y T+ TGDG A+ RAG+ DLEF QFHPT
Sbjct: 168 WNRETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPT 227
Query: 296 GIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGR 352
+Y LITE RGEG YL++ +G RFM + P +LA RD+V+R++ E++ G
Sbjct: 228 ALYKPRARYFLITEAVRGEGAYLVDRDGTRFMADFHPRG-ELAPRDIVARAIDHEMKRG- 285
Query: 353 GVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPT 412
D V+L + E QR P I + AG+D TREPIPV+P HY GGI
Sbjct: 286 ----GADCVFLDASGI--EAFRQRFPTIYAK-CLGAGIDPTREPIPVVPAAHYTCGGISV 338
Query: 413 NYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIA--- 469
+ +G+ + GLYA GE +C+ +HGANRL +NSLL+ +VFG + A+ I+
Sbjct: 339 D--------DHGRTTVP-GLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389
Query: 470 ----EENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRT 525
+ + +P + N + V + M YA + R
Sbjct: 390 PYASDISTSPPWDEPRSENPDDRVVLQHNMSELR--------------SFMWDYAGIVRL 435
Query: 526 QETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKES 585
++L+ ++ L ++ ++ EL+NL+ A +A R+ES
Sbjct: 436 TKSLERALRRLVMLQQE-----------------IDEYELRNLVQVAKLITRSALMREES 478
Query: 586 RGAHAREDF 594
RGAH R D+
Sbjct: 479 RGAHFRLDY 487
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 295 bits (757), Expect = 4e-92
Identities = 187/578 (32%), Positives = 276/578 (47%), Gaps = 77/578 (13%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112
+HQ D +++G+G AGL A L AE + AV++K + T AQGGI A L E
Sbjct: 3 TSPEHQCDVLIIGSGAAGLSLALRL-AEHRRVAVLSKGPLSEGSTFYAQGGIAAVLD--E 59
Query: 113 EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGG 172
D H+ DT+ L D+DA+ ++ A +AV L + G+PF+ A G
Sbjct: 60 TDSIESHVEDTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQ------ANGE 113
Query: 173 QSLKYGK-GGQAHR-CCAVADRTGHSLLHTLYGQSLRY-DCNYFVEYFALDLIIEN---- 225
+ + GG +HR AD TG ++ TL ++ + + + A+DLI +
Sbjct: 114 EGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGL 173
Query: 226 --GECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLP 283
G L + A VLATGG + Y T+ +GDG AM RAG
Sbjct: 174 PGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCR 233
Query: 284 NEDLEFVQFHPTGIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVV 340
++EF QFHPT +Y LITE RGEG YL +G RFM + A +LA RD+V
Sbjct: 234 VANMEFNQFHPTCLYHPQARSFLITEALRGEGAYLKLPDGTRFMPDFDERA-ELAPRDIV 292
Query: 341 SRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVL 400
+R++ E++ G D VYL + H P + + Q P I E + G+D+T+EPIPV+
Sbjct: 293 ARAIDHEMKR-LGA----DCVYLDISHKPADFIRQHFPTIYERCLEL-GIDITKEPIPVV 346
Query: 401 PTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVF 460
P HY GG+ + G+ T ++ GLYA GE S + +HGANR+ +NSLL+ +V+
Sbjct: 347 PAAHYTCGGVMVDLHGR--TDLD-------GLYAIGEVSYTGLHGANRMASNSLLECLVY 397
Query: 461 GRACAKTIAEENKPGAPIKPFAANAGESSVANLD--------WVRHAKGDITTADLRLTM 512
GR+ A+ I A ES V + D W +LRL M
Sbjct: 398 GRSAAEDILSRLPKAPMPPTLPA-WDESRVTDSDEEVVIQHNW----------HELRLFM 446
Query: 513 QKTMQTYAAVFRTQETLQEGCNKMAALYKDL----AHLKVFDRSLIWNTDLVETLELQNL 568
Y + RT + L+ +++ L +++ A+ +V + +L LEL+NL
Sbjct: 447 WD----YVGIVRTTKRLERALHRIRLLQQEIDEYYANFRV-------SNNL---LELRNL 492
Query: 569 MINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKP 606
+ A + A RKESRG H D+ + L A P
Sbjct: 493 VQVAELIVRCAMERKESRGLHYTLDYP---ELLPEAGP 527
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 279 bits (717), Expect = 1e-86
Identities = 178/550 (32%), Positives = 233/550 (42%), Gaps = 81/550 (14%)
Query: 55 VDHQFDAVV-VGAGGAGLRAAFGLVAEGFKTAVITKL-FPTRSHTVAAQGGINAALGNME 112
+ V VG G AGL AA L V++ + + AQGGI AALG
Sbjct: 5 LRILTGRPVIVGGGLAGLMAALKLAPR--PVVVLSPAPLGEGASSAWAQGGIAAALG--P 60
Query: 113 EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGG 172
+D H DT+ L D +T EAP A+ +L G+PF R DG++ A G
Sbjct: 61 DDSPALHAADTLAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRL---ALGL 117
Query: 173 QSLKYGKGGQAH---RCCAVA-DRTGHSLLHTLYGQSLRYDCNYFVE-YFALDLIIENGE 227
++ AH R V D G +++ L +E A L++++G
Sbjct: 118 EA--------AHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGA 169
Query: 228 CKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDL 287
GV L G A VLATGG G Y T+ G G A+ +RAG D
Sbjct: 170 VAGV--LAATAGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADP 227
Query: 288 EFVQFHPTGIYGAG---CLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM 344
EFVQFHPT I L TE RGEG LIN +GERFM P +LA RDVV+R++
Sbjct: 228 EFVQFHPTAIDIGRDPAPLATEALRGEGAILINEDGERFMADIHP-GAELAPRDVVARAV 286
Query: 345 TIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVH 404
EI GRG +L R P + A AG+D R+PIPV P H
Sbjct: 287 FAEIAAGRGA-------FLDARAALGAHFATRFPTVYA-ACRSAGIDPARQPIPVAPAAH 338
Query: 405 YNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRAC 464
Y+MGGI + G+ + GL+AAGE + + +HGANRL +NSLL+ VVF
Sbjct: 339 YHMGGIAVDADGR---------SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARA 389
Query: 465 AKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFR 524
A+ IA A AA A A+L +R M + V R
Sbjct: 390 AEDIAGTPAAAAA-PLSAAAAPALDPADLALLR----------------PIMSRHVGVLR 432
Query: 525 TQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKE 584
+ L+ + L + V L+I AA R+E
Sbjct: 433 DADGLRRAIAALLPLEA--------GAGPAADPATVA------LLIAV-----AALAREE 473
Query: 585 SRGAHAREDF 594
SRGAH R DF
Sbjct: 474 SRGAHFRTDF 483
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 278 bits (713), Expect = 1e-85
Identities = 193/584 (33%), Positives = 253/584 (43%), Gaps = 90/584 (15%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWH 119
D VVVG+G AGL AA G + V+TK T AQGGI A L D H
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDP--GDSPEAH 75
Query: 120 MYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGK 179
+ DT+ L D DA+ + E P+AV EL G F + DG+ GG S
Sbjct: 76 VADTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHS----- 130
Query: 180 GGQAHRCC-AVADRTGHSLLHTLYGQSLRYDCNYFVEY-FALDLII-ENGECKGVIALCL 236
R A D TG + L ++R D E+ ALDL+ G GV L
Sbjct: 131 ---RRRIVHAGGDATGAEVQRAL-DAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVL 186
Query: 237 EDGS------IHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290
+GS +H A VLATGG G+ Y + T+ TGDG A+ RAG DLEFV
Sbjct: 187 GEGSPDGVGAVH---APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFV 243
Query: 291 QFHPTGIY-GAGC-----LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM 344
QFHPT ++ G LI+E RGEG L++++G RFM P+A DLA RDVV++++
Sbjct: 244 QFHPTVLFLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLA-DLAPRDVVAKAI 302
Query: 345 TIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVH 404
++ DHVYL + E +R P I+ + AG+D R+PIPV P H
Sbjct: 303 DRRMKA-----TGDDHVYLDARGI--EGFARRFPTITA-SCRAAGIDPVRQPIPVAPAAH 354
Query: 405 YNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRAC 464
Y+ GG+ T+ G+ T V G LYAAGE +C+ VHGANRL +NSLL+ +V G
Sbjct: 355 YSCGGVVTDVYGR--TSVPG-------LYAAGEVACTGVHGANRLASNSLLEGLVVGERA 405
Query: 465 AKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFR 524
A + A E + A R +Q+ M A V R
Sbjct: 406 GAAAAAHAAAAGRPRATPAVGPEPGL-------------LPALDRAELQRAMTRGAGVLR 452
Query: 525 TQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKE 584
+ L L V R E NL + A + AA R E
Sbjct: 453 SAAGLARAA---DRLAAGAPARVVPGR---------ADWEDTNLTLVARALVAAALARTE 500
Query: 585 SRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVD 628
SRG H REDF D W + + +
Sbjct: 501 SRGCHWREDFPDTDD------------------EWARSIVVRLA 526
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 278 bits (714), Expect = 2e-85
Identities = 194/628 (30%), Positives = 276/628 (43%), Gaps = 83/628 (13%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT-RSHTVAAQGGINAALGNMEEDDWHW-H 119
+VVG G AGL A G + + L P RSH+V AQGGIN A+ E D W H
Sbjct: 7 IVVGGGLAGLMATIKAAEAGVHVDLFS-LVPVKRSHSVCAQGGINGAVNTKGEGDSPWIH 65
Query: 120 MYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGK 179
DTV G D+L +Q + M AP + L+ G+ F+RT +G + R FGG
Sbjct: 66 FDDTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGT------ 119
Query: 180 GGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFA----LDLII-ENGECKGVIAL 234
HR TG LL+ L Q RY+ V + L ++ + G C+G++A
Sbjct: 120 --LHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQ 177
Query: 235 CLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHP 294
L I F A+ ++ATGG G + T++ TG + + + G + EF+Q HP
Sbjct: 178 DLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHP 237
Query: 295 TGIYGAGC--LITEGCRGEGGYL-INSEGER--FMERYAPVAKDLASRDVVSRSM-TIEI 348
T I G L++E RGEGG + +G+ F+E P +L RD+ +R + + +
Sbjct: 238 TAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCV 297
Query: 349 REGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMG 408
+ G+ ++ VYL L H P++L +L GI E F G D + P+ + P VHY+MG
Sbjct: 298 EQKLGIN-GENMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMG 356
Query: 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTI 468
G+ +Y Q I GL+AAGE S HGANRLGANSLL + G
Sbjct: 357 GLWVDYD---------QMTNIPGLFAAGECD-YSYHGANRLGANSLLSAIYGGMVAG--- 403
Query: 469 AEENKPGAP--IKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKT----------- 515
P A IK +A + S + + + K + D L+M T
Sbjct: 404 -----PNAVEYIKGLGKSADDVSSSVFE--QALKQEQEKFDNILSMDGTENAYVLHKELG 456
Query: 516 --MQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAI 573
M V R + L E K+ L + + V D S N T +L N++ A
Sbjct: 457 EWMTDNVTVVRENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELAR 516
Query: 574 QTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGK 633
A NR ESRGAH + +F R D E+W K T+ +
Sbjct: 517 VITIGALNRNESRGAHYKPEFPERND-----------------ENWLKTTMATYTPEGEE 559
Query: 634 VKIYYRPVIDKTLDAKECATIAPAIRSY 661
+ Y V D +L I P R Y
Sbjct: 560 PEFSYEDV-DTSL-------IPPRKRDY 579
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 265 bits (680), Expect = 3e-80
Identities = 175/582 (30%), Positives = 253/582 (43%), Gaps = 77/582 (13%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLF-----PTRSHTVAAQGGINAALGNMEEDDW 116
+VVG G AG AA L G+ KLF P R+H++AAQGGIN A+ + D
Sbjct: 2 IVVGTGLAGGMAAAKLAELGYHV----KLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDS 57
Query: 117 HW-HMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSL 175
W H DTVKG D+ + + + +P+ + ++ G+PF+R G + R+FGG
Sbjct: 58 PWRHFDDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGV-- 115
Query: 176 KYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFA----LDLII-ENGECKG 230
Q R +TG LL L R VE + LD+I+ + +G
Sbjct: 116 ------QVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARG 169
Query: 231 VIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFV 290
+IA L G I +A+ +LATGGYG + T+A G + EF+
Sbjct: 170 IIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFI 229
Query: 291 QFHPTGIYGAGC------LITEGCRGEG----------GYLINS--EGER--FMERYAPV 330
Q HPT I G L++E R +G N+ E +R F+ER P
Sbjct: 230 QIHPTAIPVDGTWQSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPA 289
Query: 331 AKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHH----LPPEDLHQRLPGISETAMI 386
+L RD+ SR++ G+GVGP ++ VYL L +++ + + E
Sbjct: 290 FGNLVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEK 349
Query: 387 FAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGA 446
F G D + P+ + P VHY MGG+ +Y Q I GL+AAGE S HGA
Sbjct: 350 FTGDDPYKVPMRIFPAVHYTMGGLWVDYD---------QMTNIPGLFAAGECDFSQ-HGA 399
Query: 447 NRLGANSLLDLVVFGR-ACAKTIAEEN--KPGAPIKPFAANAGESSVAN----LDWVRHA 499
NRLGANSLL + G A TI + + P A ++++A D +
Sbjct: 400 NRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALAEEQERFDRLLKM 459
Query: 500 KGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAH-------LKVFDRS 552
+GD L + + M V R E L + K+ L + K ++
Sbjct: 460 RGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQV 519
Query: 553 LIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDF 594
L + + + LEL LM A NR ES GAH R +F
Sbjct: 520 LEFARRVADYLELAELMC------LDALNRNESCGAHFRPEF 555
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 245 bits (627), Expect = 2e-74
Identities = 133/418 (31%), Positives = 213/418 (50%), Gaps = 45/418 (10%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWH 117
D ++VG+G AGL +A L + K +++K +T AQGGI+ A +DD
Sbjct: 4 YADVLIVGSGVAGLYSALNL-RKDLKILMVSKGKLNECNTYLAQGGISVARN---KDDIT 59
Query: 118 WHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKY 177
+ DT+K + + +A+ + E+ + + +L + G+ F + Y + G S+
Sbjct: 60 SFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE-GAHSV-- 116
Query: 178 GKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE--YFALDLIIENGECKGVIALC 235
+R D TG + L + + +E Y +D+I + C G A+C
Sbjct: 117 ------NRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYL-VDIIENDNTCIG--AIC 167
Query: 236 LEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPT 295
L+D + T+LATGG G + + T+ TGDG A+ R + +DL+++Q HPT
Sbjct: 168 LKDNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPT 227
Query: 296 GIYGAGC-----LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIRE 350
Y LI+E RGEGG L+NS+GERF+ +L RDVV++++ E+++
Sbjct: 228 AFYEETIEGKKFLISESVRGEGGKLLNSKGERFV-------DELLPRDVVTKAILEEMKK 280
Query: 351 GRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGI 410
++VYL + L + L R P I E + G+D+T++ IPV P HY MGGI
Sbjct: 281 -----TGSNYVYLDITFLDKDFLKNRFPTIYEECLK-RGIDITKDAIPVSPAQHYFMGGI 334
Query: 411 PTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTI 468
+ +N + + + LYA GE SC+ VHGANRL +NSLL+ +VF + A+ I
Sbjct: 335 KVD--------LNSKTSMKN-LYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKI 383
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 216 bits (553), Expect = 2e-63
Identities = 159/545 (29%), Positives = 248/545 (45%), Gaps = 100/545 (18%)
Query: 63 VVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYD 122
+VG G AGL AA L +GF +I +S++ AQ GI A +E D H+ D
Sbjct: 6 IVGGGLAGLTAAISLAKKGFDVTIIGPG-IKKSNSYLAQAGI--AFPILEGDSIRAHVLD 62
Query: 123 TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPF-SRTTDGKIYQRAFGGQSLKYGKGG 181
T++ ++ D++ + + ++ +A L + G+ F +G G
Sbjct: 63 TIRAGKYINDEEVVWNVISKSSEAYDFLTSLGLEFEGNELEG----------------GH 106
Query: 182 QAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSI 241
R + + TG ++ LY + N F+ FA +L I+NG+ GV DG +
Sbjct: 107 SFPRVFTIKNETGKHIIKILYKHARELGVN-FIRGFAEELAIKNGKAYGVFL----DGEL 161
Query: 242 HRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAG 301
+F+A TV+ATGG+ + + G G P DLEFVQFHPTG G
Sbjct: 162 LKFDA--TVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKR 219
Query: 302 C--LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKD 359
LI+E RG G L+ +GERF+ +L +RD+V+R++ +++EG+GV D
Sbjct: 220 GTYLISEAVRGAGAKLVTGDGERFV-------NELETRDIVARAIYRKMQEGKGVFLDAT 272
Query: 360 HVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTN--YKGQ 417
+ ED +R P I + G+D +R+ IPV P HY +GGI + Y+
Sbjct: 273 GI---------EDFKRRFPQIY-AFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTG 322
Query: 418 VLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAP 477
I LYA GEA+ + HGANRL +NSLL+ +V G A+TI+ E +P
Sbjct: 323 -----------IKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE-RPKLR 370
Query: 478 IKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMA 537
G GD+ ++++ + +A + R++E+L+EG K+
Sbjct: 371 EVKEPPYHGYEL-----------GDVD------SIREILWNHAGIVRSEESLREGLKKLE 413
Query: 538 ALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVR 597
+ D LK+ + ++ A R+ESRGAH REDF
Sbjct: 414 GIEAD-PRLKLLAKGVL----------------------ECALAREESRGAHYREDFPFM 450
Query: 598 VDELD 602
E +
Sbjct: 451 RKEFE 455
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 189 bits (483), Expect = 6e-52
Identities = 180/619 (29%), Positives = 256/619 (41%), Gaps = 144/619 (23%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF---PTRSHTVAAQGGINAALGNM-EE 113
+FD +VVG G AG AA L G+ V + P R+H++AAQGGINAA +
Sbjct: 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFC--YQDSPRRAHSIAAQGGINAAKNYQNDG 92
Query: 114 DDWHWHMYDTVKGSDWLGDQDAIHYMTREA--------PKAVIELEN-YGMPFSRTTDGK 164
D + YDTVKG D + REA +I+ G+PF+R G
Sbjct: 93 DSVYRLFYDTVKGGD---------FRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGL 143
Query: 165 IYQRAFGGQSLK---YGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFA--- 218
+ R+FGG + Y +G +TG LL Y R V+ +
Sbjct: 144 LANRSFGGAQVSRTFYARG-----------QTGQQLLLGAYQALSRQIAAGTVKMYTRTE 192
Query: 219 -LDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMI 277
LDL++ +G +G++A L G I R A+ VLATGGYG ++ T+A + TA+
Sbjct: 193 MLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGS--NATAIW 250
Query: 278 S--RAGLPNEDLEFVQFHPTGIYGAG------CLITEGCRGEG--------GYLIN---- 317
+ G + F Q HPT I +G L++E R +G G
Sbjct: 251 RAHKKGAYFANPCFTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDKRKPNDI 310
Query: 318 SEGER--FMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQ 375
E ER ++ER P +L RDV SR+ GRGVGP VYL D +
Sbjct: 311 PEEERDYYLERRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDF-----ADAIK 365
Query: 376 RLPGISETAMIFAGVDVTRE--------------------PIPVLPTVHYNMGGIPTNYK 415
RL G DV RE P+ + P VHY MGG+ +Y
Sbjct: 366 RL-----------GKDVIRERYGNLFDMYERITGENPYETPMRIYPAVHYTMGGLWVDYN 414
Query: 416 GQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAK-------TI 468
I GL+ GEA+ S HGANRLGA++L+ + A TI
Sbjct: 415 LM---------STIPGLFVIGEANF-SDHGANRLGASALM------QGLADGYFVLPYTI 458
Query: 469 ----AEENKPG--APIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAV 522
A+ + P A +D + + KG T + K M Y +
Sbjct: 459 GNYLADTIGTPKVSTDHPEFKEAEAEVQDRIDRLLNIKGKRTVDSFHRELGKIMWDYCGM 518
Query: 523 FRTQETLQEGCNKMAALYKDL-AHLKVFDRSLIWNTDL------VETLELQNLMINAIQT 575
R +E L++ K+ AL ++ +++V + N +L + LEL LM
Sbjct: 519 ARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGELMC----- 573
Query: 576 MFAAENRKESRGAHAREDF 594
A +R+ES G H RE+
Sbjct: 574 -RDALHREESCGGHFREEH 591
>gnl|CDD|217281 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term.
This family contains fumarate reductases, succinate
dehydrogenases and L-aspartate oxidases.
Length = 127
Score = 167 bits (424), Expect = 6e-49
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 26/153 (16%)
Query: 509 RLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNL 568
R +Q+ MQ +A VFRT+E L+E K+ L + +++V D+S ++NTDL+E LEL NL
Sbjct: 1 RKELQEIMQEHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLIEALELGNL 60
Query: 569 MINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVD 628
+ A +A RKESRGAH RED+ R D E+W KHTL D
Sbjct: 61 LELAEAIATSALARKESRGAHYREDYPERDD-----------------ENWLKHTLAYYD 103
Query: 629 VNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
G ++ Y PV+ I P RSY
Sbjct: 104 -GDGGPRLDYEPVVIT--------RIPPKERSY 127
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 159 bits (404), Expect = 1e-42
Identities = 139/462 (30%), Positives = 203/462 (43%), Gaps = 86/462 (18%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS-HTVAAQGGINAALGNME-----E 113
D VVVG+G AGL AA G V+ + P ++ A GG+NAA + + E
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIE 60
Query: 114 DDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQ 173
D + DT+KG + D D + + E+ AV L++ G+ + Q GG
Sbjct: 61 DSPELFIKDTLKGGRGINDPDLVRILAEESADAVDWLQD-GVGA---RLDDLIQ--LGGH 114
Query: 174 SLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVI 232
S+ +AHR A +G ++ LY ++ + + + DLI + G GV+
Sbjct: 115 SVP-----RAHRPTGGA-ASGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVV 168
Query: 233 ALCLEDGSIHRFNANNTVLATGGYGR------AY------FSCTSAHTCTGDGTAMISRA 280
+ I+ A VLATGG+G Y T+ TGDG M +
Sbjct: 169 VK-GKGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKKLGSTNQPGATGDGLLMAEKI 227
Query: 281 GLPNEDLEFVQFHPTG-IYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDV 339
G D++++Q HPT G LI+E RG G L+N GERFM +LA+RD
Sbjct: 228 GAALVDMDYIQAHPTASPDEGGFLISEAVRGYGAILVNKTGERFMN-------ELATRDT 280
Query: 340 VSRSMTIEIREGRG---VGPDKDHV-------YLQLHHLPP----EDLHQRLPGISETA- 384
V S I + G+ + D + Y +L E+L ++ GI A
Sbjct: 281 V--SDAILAQPGKSAYLIFDDDVYKKAKKVDNYYRLGVAYKGDSLEELAKQF-GIPAAAL 337
Query: 385 ---------------------MIFAGVDVTREP---IPVLPTVHYNMGGIPTNYKGQVLT 420
+ VD+++ P I V P VH+ MGG+ N K +VL
Sbjct: 338 KKTVKDYNDYVASGKDTPFGRPMDMPVDLSKSPYYAIKVTPGVHHTMGGVKINTKAEVL- 396
Query: 421 HVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGR 462
+ K I GL+AAGE + VHGANRLG N++ D +VFGR
Sbjct: 397 --DANGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGR 435
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 139 bits (353), Expect = 2e-35
Identities = 122/465 (26%), Positives = 189/465 (40%), Gaps = 76/465 (16%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEE---- 113
++D V+VGAGGAG+ AA G ++ K+ +T+ A G+NA+ ++
Sbjct: 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGI 120
Query: 114 DDWHWHMYD-TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGG 172
D + Y+ T+KG D+ + Y + A+ L++ G+ T GG
Sbjct: 121 ADSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-------ITGG 173
Query: 173 QSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVI 232
S K + HR G L+ L FV + ++G+ GV
Sbjct: 174 MSEK-----RTHRP-HDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVK 227
Query: 233 ALCLEDGSIHRFNANNTVLATGGYGR------------AYFSCTSAHTCTGDGTAMISRA 280
+ ++ V+ TGG+G + T+ TGDG MI +
Sbjct: 228 VK-INGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKL 286
Query: 281 GLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFM---------------- 324
G D++ +Q HPT LI E RGEG L+N +G+RF
Sbjct: 287 GGTTVDMDQIQIHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFGNELDTRDKVSAAINKL 346
Query: 325 -ERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHV--YLQLHHLPPEDLHQRLPGIS 381
E+YA V D +D R I E +G + + + ++P E L + L +
Sbjct: 347 PEKYAYVVFDSGVKD---RVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWN 403
Query: 382 E-------------TAMIFAGVDVTREP---IPVLPTVHYNMGGIPTNYKGQVLTHVNGQ 425
+ T M D++ P I + P +HY MGG+ N +VL
Sbjct: 404 KAVKNKKDEAFGRTTGM---DNDLSTGPYYAIKIAPGIHYTMGGVKINTNTEVLKK---D 457
Query: 426 DKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAE 470
I GLYAAGE + +HG NR+G NS+ D+++FGR AE
Sbjct: 458 GSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAE 501
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 89.8 bits (223), Expect = 2e-18
Identities = 89/316 (28%), Positives = 126/316 (39%), Gaps = 86/316 (27%)
Query: 238 DGSIHRFNANNTVLATGGYG---------RAY------FSCTSAHTCTGDGTAMISRAGL 282
G + A+ +LATGG+ R Y F T+ TGDG + + G
Sbjct: 601 SGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPWATGDGVKLARKLGA 660
Query: 283 PNEDLEFVQFHPTGIYG-------AGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLA 335
D++ VQ HPTG+ L E RG GG L+N GERF+ +L
Sbjct: 661 TLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFV-------NELD 713
Query: 336 SRDVVSRSMTIEIREGRGVGPDK--------DHVYL------------------------ 363
R VVS+++ + E G G K L
Sbjct: 714 LRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKG 773
Query: 364 --QLHHLPPEDLHQRLPGISETA-----------MIFAGVDVTREPIPV---LPTVHYNM 407
+L P E+LH+ L + ++F V T+ P V P++HY M
Sbjct: 774 LAKLIGCPVENLHRTLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTM 833
Query: 408 GGIPTNYKGQVLTHVNGQD-----KIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGR 462
GG + ++ N + + I GL+ AGE + VHG NRLG NSLL+ VVFG+
Sbjct: 834 GGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVT-GGVHGGNRLGGNSLLECVVFGK 892
Query: 463 AC---AKTIAEENKPG 475
A TI ++ K G
Sbjct: 893 IAGDRAATILQKKKYG 908
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 86.9 bits (216), Expect = 9e-18
Identities = 145/691 (20%), Positives = 238/691 (34%), Gaps = 178/691 (25%)
Query: 51 EYPVVDHQFDAVVVGAGGAGLRAAFGLV--AEGFKTAVITKLFPTRSHTVAAQG--GINA 106
VV+ D +++G G AG AAF A K ++ K RS VA QG INA
Sbjct: 4 NPEVVEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVA-QGLSAINA 62
Query: 107 ALG-NMEEDDWHWHMYDTVKGSDWLG--DQDAIHYMTREAPKAVIELENYGMPFSRTTDG 163
+G +D+ V+ D +G +D ++ + R V E +G+P + +G
Sbjct: 63 YIGEGETPEDY----VRYVRK-DLMGIVREDLVYDIARHVDSVVHLFEEWGLPIWKDENG 117
Query: 164 KIYQRA------FGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYF 217
K Y R G+S K VA+ +L N F
Sbjct: 118 K-YVRRGRWQIMINGESYK----------PIVAEAAKKAL-----------GDNVLNRVF 155
Query: 218 ALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGG----Y---------GRAYFSCT 264
DL++++ G + + + + F A ++ATGG Y GR ++
Sbjct: 156 ITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPF 215
Query: 265 SAHTCTGDGTAMISRAGLPNEDLEFVQFH-------------PTGIYGAGCLITEGCRGE 311
+ TG G AM RAG E F P G +
Sbjct: 216 N----TGSGYAMGIRAGA-----EMTTFENRFIPLRFKDGYGPVGAWFLLF--------- 257
Query: 312 GGYLINSEGERFMERYAPVAKDLASRDVVSR--------SMTIEIREGRGVGPDKDHVYL 363
+N+ GE + + A K + E + GRG P +Y+
Sbjct: 258 KAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGRG--P----IYM 311
Query: 364 QLHH-LPPEDLHQRL--------PGISETAMIFAGVDV--TREPIPVLPTVHYNMGGIPT 412
L + L L PG A+++A ++ E ++ T Y +G
Sbjct: 312 DTEEALQDKHLESELWEDFLDMTPGQ---ALLWAAQNIEPEEENSEIMGTEPYIVGS--- 365
Query: 413 NYKGQVLTHVNGQDKI--------------IHGLYAAGEASCSSVH----GA---NRLGA 451
+ G V+G + + GL+AAG+ S H G+ R+ A
Sbjct: 366 -HSGASGYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAA 424
Query: 452 NS----LLDLVVFGRACAKTIAEE--NKPGAPIKPFAANAGESSVANLDWVRHAKGDITT 505
+ +LD EE + AP++ + S+ +++ I+
Sbjct: 425 KAAVRYILDNKDEKPEIDDDQIEELKKEIYAPLERYEEFKDYSTDPDVN-----PNYISP 479
Query: 506 ADLRLTMQKTMQTYAA----VFRTQET-LQEGCNKMAALYKDLAHLKVFDRSLIWNTDLV 560
L +QK M YA + T E L+ + L +D L D +L+
Sbjct: 480 EQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKLAARD-----LHELM 534
Query: 561 ETLELQNLMINAIQTMFAAENRKESR--GAHAREDFKVRVDELDYAKPLEGQVPKPIEEH 618
EL++ ++ A + RKE+R G + R D+ P +E+
Sbjct: 535 RCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADY-----------------PGKDDEN 577
Query: 619 WRKHTLTDVDVNTGKVKIYYRPVIDKTLDAK 649
W+ + D TG+ I P + K
Sbjct: 578 WKCFVNSRYDPGTGEWTIRKLPYYQIIPEHK 608
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 60.7 bits (147), Expect = 2e-09
Identities = 150/669 (22%), Positives = 233/669 (34%), Gaps = 148/669 (22%)
Query: 60 DAVVVGAGGAGLRAAFGLV----AEGFKTAVITKLFPTRSHTVAAQG--GINAALGNMEE 113
D ++VG G G AAF V +G K ++ K RS VA QG IN LG
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVA-QGLSAINTYLGTRFG 59
Query: 114 DDWHWHMYDTVK--GSDWLG--DQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRA 169
++ + D V+ +D +G +D I M R +V E +G+P + Y R
Sbjct: 60 EN---NAEDYVRYVRTDLMGLVREDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVRE 116
Query: 170 FGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECK 229
Q + +G+ + VA+ ++L G F+ LD N
Sbjct: 117 GRWQIMIHGESYK----PIVAEAAKNAL-----GDIFE---RIFIVKLLLDKNTPN-RIA 163
Query: 230 GVIALCLEDGSIHRFNANNTVLATGG-------------YGRAYFSCTSAHTCTGDGTAM 276
G + + +H F A ++A GG GRA+++ +A G M
Sbjct: 164 GAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNA----GSTYTM 219
Query: 277 ISRAGLPNEDLE--FVQFH---PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVA 331
++AG +E FV G GA L+ + N +GE + +
Sbjct: 220 CAQAGAEMTQMENRFVPARFKDGYGPVGAWFLLFK------AKATNGKGEEYCATNRAML 273
Query: 332 KDLASRDVV----------SRSMTIEIREGRG-------------VGPDKDHVYLQLHHL 368
K R + M E+REGRG DK Q HL
Sbjct: 274 KPYEGRGYAKPHVIPTCLRNHMMLREMREGRGPIYMDTKEALQDPFATDKK----QQKHL 329
Query: 369 PPEDLHQRLPGISETAMIFAGVDVT--REPIPVLPTVHYNMGG---------------IP 411
E L A ++A +V ++PT Y MG +P
Sbjct: 330 EEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYLMGSHSGCCGIWVSGPEDWVP 389
Query: 412 TNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE 471
YK + N + + GL+ G+ +S H + + S + + +A + I +
Sbjct: 390 EEYKVRAAKVYN-RMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWI-LD 444
Query: 472 NKPGAPIKPFAANAGE---SSVANLDWVRHAKGDITTADLR----------LTMQKTMQT 518
+K P F A A E ++ K T + + +QK M
Sbjct: 445 HKDFKPE--FDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDE 502
Query: 519 YAA----VFRTQET-LQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAI 573
Y + T E L G MA L +DL K+ R L +L+ EL + +
Sbjct: 503 YGGGVTTYYMTNEALLDTGLKLMAMLEEDL--EKLAARDL---HELLRAWELYHRLWTVE 557
Query: 574 QTMFAAENRKESR--GAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNT 631
M RKE+R G + R DF +E+W+ + D T
Sbjct: 558 AHMQHILFRKETRWPGYYYRADF-----------------LGLDDENWKCFVNSKYDPAT 600
Query: 632 GKVKIYYRP 640
G+ I +P
Sbjct: 601 GETTIEKKP 609
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 56.2 bits (136), Expect = 3e-08
Identities = 48/162 (29%), Positives = 60/162 (37%), Gaps = 28/162 (17%)
Query: 221 LIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR------AYFSCTSAH-TCTGDG 273
L +G G + G A +L G GR Y T + T GDG
Sbjct: 164 LTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDG 223
Query: 274 TAMISRAGLPNEDLEFVQFHP--TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVA 331
AM AG +LE Q +P G C G GGY N++GERF+E
Sbjct: 224 YAMAYHAGAELANLECFQINPLIKDYNGPACAYVTG--PLGGYTANAKGERFIECDYW-- 279
Query: 332 KDLASRDVVSRSMTIEI-RE-GRGVGPDKDHVYLQLHHLPPE 371
S M E +E G GP V+L+L HL E
Sbjct: 280 ---------SGQMMWEFYQELQSGNGP----VFLKLDHLAEE 308
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 55.2 bits (133), Expect = 9e-08
Identities = 82/329 (24%), Positives = 127/329 (38%), Gaps = 43/329 (13%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVA-AQGGINAAL--GNMEEDDW 116
D +V+G G AG AA G ++ K S +A G+N A+ G E +D+
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDY 74
Query: 117 HWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAF---GGQ 173
+ + + +D + +Q ++ V LE YG+ F + G+ R G
Sbjct: 75 ---VAEITRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSY 131
Query: 174 SLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIA 233
L +G + +L L +S+R + ++ E G G A
Sbjct: 132 VLPMPEGKDVKK----------ALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAA 181
Query: 234 LCLEDGSIHRFNANNTVLATGGYGR------AYFSCTSAH-TCTGDGTAMISRAGLPNED 286
L G A +LATG GR Y T + T GDG +M AG
Sbjct: 182 LNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSG 241
Query: 287 LEFVQFHP--TGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM 344
+E Q +P G C GGY +N++GERF++ D S M
Sbjct: 242 IECFQINPLIKDYNGPACAYV--ANPFGGYQVNAQGERFVD-----------SDYWSGQM 288
Query: 345 TIEIREGRGVGPDKDHVYLQLHHLPPEDL 373
E++ R + + +YL++ HLP E L
Sbjct: 289 MAEVK--REIESARGPIYLKVSHLPEETL 315
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 43.7 bits (104), Expect = 2e-04
Identities = 49/216 (22%), Positives = 69/216 (31%), Gaps = 78/216 (36%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINA----ALGNMEEDD 115
D +V+G G AG AA G K +IT + T+A + A G++
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLIT----HNTDTIAELSCNPSIGGIAKGHL---- 52
Query: 116 WHWHMYDTVKGSDWLG-------DQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQR 168
V+ D LG D+ I + K
Sbjct: 53 --------VREIDALGGLMGKAADKTGIQFRMLNTSK----------------------- 81
Query: 169 AFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYF-----VEYFALDLII 223
G +A R A DR LY + + ++ DLI
Sbjct: 82 ---------GPAVRALR--AQVDRD-------LYSKEMTETLENHPNLTLIQGEVTDLIP 123
Query: 224 ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRA 259
ENG+ KGV+ EDG + A VLATG +
Sbjct: 124 ENGKVKGVV---TEDGEE--YKAKAVVLATGTFLNG 154
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 42.2 bits (100), Expect = 6e-04
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
++D VV+GAG AG AA G K A++
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALV 33
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 41.7 bits (99), Expect = 0.001
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+DA+V+GAG AG A G K A+I
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGLGMKVALI 34
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 40.7 bits (95), Expect = 0.002
Identities = 39/224 (17%), Positives = 64/224 (28%), Gaps = 33/224 (14%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
+ D V++G G GL AA+ L G V+ GGI A + +
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGEL 61
Query: 116 ----------WHWHMYD---------TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMP 156
W +G L ++ + + + + ELE G
Sbjct: 62 EVRPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLA-QLERLAAELEAAGED 120
Query: 157 FSRTT--DGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFV 214
+ + A G + GG D L L +
Sbjct: 121 AELLDAAEAAELEPALG---PDFVCGGLFDPTGGHLD--PRLLTRALAAAAEELGVVIIE 175
Query: 215 EYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258
+ + +G GV + G+I A+ VLA G +
Sbjct: 176 GGTPVTSLERDGRVVGVET---DGGTIE---ADKVVLAAGAWAG 213
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 40.2 bits (95), Expect = 0.003
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
++D +V+GAG AG AA G K A+I K
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 39.5 bits (93), Expect = 0.005
Identities = 48/222 (21%), Positives = 72/222 (32%), Gaps = 91/222 (40%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVA------AQGGINA----- 106
++D +V+G G AG+ AA G KT ++T T+ A GG
Sbjct: 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL----DTIGEMSCNPAIGGPGKGHLVR 59
Query: 107 ---ALGNM-----EEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFS 158
ALG + ++ + M ++ KG A+ AP+A
Sbjct: 60 EIDALGGLMGKAADKAGIQFRMLNSSKGP-------AVR-----APRAQA---------- 97
Query: 159 RTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQS---LRYDCNYFVE 215
D +Y+RA + L Q L
Sbjct: 98 ---DKWLYRRAMK---------------------------NELENQPNLHLLQGE----- 122
Query: 216 YFALDLIIENGE-CKGVIALCLEDGSIHRFNANNTVLATGGY 256
DLI+E G+ GV+ DG F+A VL TG +
Sbjct: 123 --VEDLIVEEGQRVVGVV---TADGP--EFHAKAVVLTTGTF 157
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 38.8 bits (91), Expect = 0.008
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93
+ D +VG G G A GL GF AV+ P
Sbjct: 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPA 40
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137) [Protein synthesis, tRNA and rRNA
base modification].
Length = 617
Score = 38.5 bits (90), Expect = 0.011
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
FD +V+G G AG AA G KT ++T
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLT 30
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 37.5 bits (88), Expect = 0.016
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ D +VGAG +GL AA+ L G K AV +
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56
Score = 31.7 bits (73), Expect = 0.94
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 14/51 (27%)
Query: 427 KIIHGLYAAGEASCSSVHGANRLGANSLLDLVVF------GRACAKTIAEE 471
++ GLY AG A+ +VHG R+G +F G+ A+ I E+
Sbjct: 211 EVYPGLYVAGMAAN-AVHGLPRMGP-------IFGGMLLSGKKVAELILEK 253
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 37.3 bits (87), Expect = 0.023
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
++D VVVG+G AG+ AA G T V+ K
Sbjct: 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEK 38
Score = 30.8 bits (70), Expect = 2.8
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLD-LVVFGRACAK 466
GG+ T+ +G+VL +I GLYAAG S + V G G + + + FG A
Sbjct: 496 GGLRTDVRGRVL---RDDGSVIEGLYAAGNVS-APVMGHTYAGPGATIGPAMTFGYLAAL 551
Query: 467 TIAEEN 472
IA +
Sbjct: 552 DIAAQA 557
Score = 29.6 bits (67), Expect = 7.0
Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 27/155 (17%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTV-LATGG----------YGRAYFSC---TS 265
DL +E+G GV A E G A V LA+GG Y RA
Sbjct: 233 DLYVEDGRVTGVHA--AESGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVG 290
Query: 266 AHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAG---CLITEGCRGEGGYLINSEGER 322
A TGDG + G + ++ + PT G L G ++N G+R
Sbjct: 291 AKANTGDGILAGEKLGAALDLMDDAWWGPTIPLPGGPWFALSERNL--PGSIIVNMSGKR 348
Query: 323 FMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPD 357
FM AP + V E +G G G +
Sbjct: 349 FMNESAPYV------EAVHHMYGGEYGQGPGPGEN 377
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 37.0 bits (86), Expect = 0.026
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93
D V++G G AGL AA L G K A+I + T
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGT 34
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 36.3 bits (84), Expect = 0.029
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D V+VGAG +GL AA+ L +G K A+I +
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIER 48
Score = 29.0 bits (65), Expect = 6.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 422 VNGQDKIIHGLYAAGEASCSSVHGANRLGA 451
V +++ GLY AG A ++V GA R+G
Sbjct: 199 VKNTREVVPGLYVAGMAV-NAVDGAPRMGP 227
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 37.3 bits (88), Expect = 0.029
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
++D +VVG G AG AA G KT ++T
Sbjct: 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLT 34
Score = 35.0 bits (82), Expect = 0.14
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254
DLI+ENG GV+ +DG F A VL TG
Sbjct: 125 DLIVENGRVVGVV---TQDGL--EFRAKAVVLTTG 154
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 37.2 bits (87), Expect = 0.029
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 407 MGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEAS---CSSVHGANRL 449
+GG+ T+ +VL + GLYAAGEA+ VHG N L
Sbjct: 485 LGGLETDLDSRVL---GADGTPLPGLYAAGEAAGFGGGGVHGYNAL 527
Score = 33.3 bits (77), Expect = 0.48
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D +VVGAG AGL AA L G + ++
Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLL 33
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 37.0 bits (86), Expect = 0.032
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGAN-SLLDLVVFGRACAK 466
GG+ T+ +VL +I GLYA G + +SV G GA S+ + VFG A
Sbjct: 489 GGLLTDEHARVL---REDGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFGYIAAL 544
Query: 467 TIAEENKPGAP 477
A P
Sbjct: 545 HAAGARSADPP 555
Score = 36.7 bits (85), Expect = 0.038
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D +D VVVG+GG G+ AA G + ++ K
Sbjct: 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEK 37
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 36.4 bits (85), Expect = 0.039
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D V+G G AGL AA L G A++
Sbjct: 7 HTDIAVIGGGPAGLAAAIALARAGASVALV 36
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 36.7 bits (85), Expect = 0.041
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D + D +VVG+GG G+ AA A G T V+ K
Sbjct: 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEK 42
Score = 31.3 bits (71), Expect = 1.8
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLD-LVVFGRACAK 466
GG+ T+ +VL D +I GLYA G S +SV G + GA + + + FG A+
Sbjct: 509 GGLRTDEHARVL---REDDSVIPGLYAVGNTS-ASVMGRSYAGAGATIGPAMTFGYVAAR 564
Query: 467 TIAE 470
A
Sbjct: 565 HAAA 568
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 36.4 bits (85), Expect = 0.042
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
FD +V+G G AGL AA G + A++ K
Sbjct: 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAK 33
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 36.1 bits (84), Expect = 0.042
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 40 DSKVKSDAISREY--PVVDH-QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ K+ + AI+ Y ++D+ + D ++VGAG +GL AA+ L G K A+ +
Sbjct: 10 EVKI-TRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61
Score = 31.5 bits (72), Expect = 1.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 422 VNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEE 471
V ++ GLY AG A +VHG R+G +++ G+ A+ I E+
Sbjct: 211 VENTGEVYPGLYVAGMAVN-AVHGLPRMGP-IFGGMLLSGKKAAEEILEK 258
>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional.
Length = 283
Score = 35.8 bits (82), Expect = 0.062
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 56 DHQFDAVV-VGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEED 114
+ + D+VV VGAGG G A+ LV G + + L +R+ +A IN A+G
Sbjct: 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA--DVINNAVGR---- 177
Query: 115 DWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMP 156
+ V G D G +D I A V+ GMP
Sbjct: 178 -------EAVVGVDARGIEDVI-----AAADGVVNATPMGMP 207
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 35.9 bits (84), Expect = 0.064
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ +D VV+G+G AG AA G + AVI +
Sbjct: 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 34.2 bits (79), Expect = 0.091
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAA---QGGINAALGNMEE 113
+++GAGGA A+ L G VI ++ +A + GI A ++EE
Sbjct: 22 VLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEE 77
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine. This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 34.8 bits (80), Expect = 0.12
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D ++VGAG +GL AA+ L G K V+
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVL 50
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 34.9 bits (81), Expect = 0.14
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 387 FAGVDVTREPIPVLPTVHYNMGGIPTNYK-GQVLTHVNGQDKIIHGLYAAGEASC----- 440
FA +D++ + PT + +GG+ + G+VL +G I GLYAAG +
Sbjct: 412 FAAIDLS---LGKAPTPGFTLGGLRVDEDTGEVL-RADGAP--IPGLYAAGRCASGIASN 465
Query: 441 SSVHGANRLGANSLLDLVVFGR 462
V G SL D FGR
Sbjct: 466 GYVSGL------SLADCSFFGR 481
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 33.4 bits (77), Expect = 0.26
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D VV+G G GL A+ L G ++
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLL 28
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 33.7 bits (78), Expect = 0.28
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
QFD VV+GAG G AA G K A I
Sbjct: 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACI 33
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 33.9 bits (78), Expect = 0.29
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D VVVG G AGL A + G I
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCI 57
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 33.6 bits (77), Expect = 0.30
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 18/65 (27%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWH 117
D ++GAG +GL AA+ L G VI + + W
Sbjct: 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVI----------FEKRDDV--------GGTWR 49
Query: 118 WHMYD 122
++ Y
Sbjct: 50 YNRYP 54
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 33.8 bits (78), Expect = 0.30
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D VVVGAG AGL A L G K +I
Sbjct: 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLI 32
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 33.6 bits (77), Expect = 0.31
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
++D V+VGAG AG AA L G V+
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVL 32
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 33.8 bits (78), Expect = 0.31
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
FD +++G G AGL A L G K A+I
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIA 30
>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.
Length = 284
Score = 33.3 bits (77), Expect = 0.36
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQ 101
V +GAGGAG A L+ G + I + P R+ +A +
Sbjct: 130 VVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 33.6 bits (77), Expect = 0.38
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90
+D VV+GAG GL AA L G K V+ K
Sbjct: 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKN 35
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 33.0 bits (76), Expect = 0.46
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ VV+GAG AG AAF G +T + +
Sbjct: 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVER 35
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form.
Sarcosine oxidase catalyzes the oxidative demethylation
of sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate.
The enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism,
Amino acids and amines].
Length = 380
Score = 32.9 bits (75), Expect = 0.54
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRS 95
FD +VVGAG G AA+ L G KT ++ + S
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 32.9 bits (75), Expect = 0.55
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 407 MGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEAS---CSSVHGANRLGANSLLDLVVFGRA 463
+GG+ T+ +VL +GQ + GLYAAGE + VHG L L + GRA
Sbjct: 487 LGGLETDLDARVLG-ADGQP--VPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRA 543
Query: 464 CAKTIAE 470
+ A
Sbjct: 544 AGRAAAG 550
Score = 29.4 bits (66), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D +VVGAG AGL AA L G + ++
Sbjct: 7 DVIVVGAGLAGLVAAAELADAGKRVLIL 34
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 33.1 bits (75), Expect = 0.59
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 9 SLLSKCANPLNGSFGSIIGVKQFHFTIHGQGDSKVKSDAISREYPVVDHQFDAVVVGAGG 68
S+ C++ L+ ++ ++ +F I + AI ++P + V+VGAG
Sbjct: 144 SIPKHCSSLLDSAYNYLVTHGYINFGI---------AQAIKDKFPAQSSKSSVVIVGAGL 194
Query: 69 AGLRAAFGLVAEGFKTAVI 87
+GL AA L+ GFK V+
Sbjct: 195 SGLAAARQLMRFGFKVTVL 213
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 32.9 bits (76), Expect = 0.60
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D +V+G G AGL AA G + +I K
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIDK 31
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 33.0 bits (75), Expect = 0.60
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ VVVGAG AGL AA L++ GFK V+
Sbjct: 240 NVVVVGAGLAGLVAARQLLSMGFKVVVL 267
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 32.6 bits (74), Expect = 0.71
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D +FDA+VVGAG AG AA + G VI +
Sbjct: 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 32.2 bits (73), Expect = 0.84
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
FDA++VGAG AG AA L EG + VI +
Sbjct: 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIER 36
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 31.9 bits (73), Expect = 0.87
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D VVVGAG AG AA+ L +G + ++ K
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 32.2 bits (74), Expect = 0.93
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D +V+G G G AA G K A++ K
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQLGLKVALVEK 32
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this
family, including sll0033 (crtH) of Synechocystis sp.
PCC 6803, catalyze a cis-trans isomerization of
carotenes to the all-trans lycopene, a reaction that
can also occur non-enzymatically in light through
photoisomerization [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 493
Score = 32.1 bits (73), Expect = 0.98
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+DA+V+G+G GL A L +G K V+ +
Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLER 31
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 32.0 bits (73), Expect = 1.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D +VGAG AGL A L G ++
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLL 31
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 32.0 bits (74), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
++D +V+GAG G AA G K A++ K
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK 35
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 32.0 bits (73), Expect = 1.1
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 20/81 (24%)
Query: 218 ALDLIIENGECKGVIALCLEDGSIHRFNANN-TVLATGGY----------------GRAY 260
A +L+ E G G ++ G R A VLA GG+ G +
Sbjct: 237 ARELLTEGGRVVGAR--VIDAGGERRITARRGVVLACGGFSHDLARIARAYPHLARGGEH 294
Query: 261 FSCTSAHTCTGDGTAMISRAG 281
S A TGDG + G
Sbjct: 295 LSPVPA-GNTGDGIRLAEAVG 314
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 31.8 bits (73), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V++GAG AGL AA+ L+ G+ V+
Sbjct: 6 SVVIIGAGPAGLTAAYELLKRGYPVTVL 33
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 31.9 bits (73), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90
AVV+GAG GL A L A G V+ +
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQR 30
>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 31.6 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHT-------VAAQGGINAA 107
D V+ G G GL A GL G + AV+ + P V+A INAA
Sbjct: 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSA---INAA 56
>gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 31.6 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 395 EPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAG 436
P+ LP H G+ N G+VL+ +G D GLY G
Sbjct: 355 LPVDGLPFDHKR--GVVPNVHGRVLSSASGAD-TEPGLYVVG 393
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 31.5 bits (72), Expect = 1.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+FD VVVG G G A L G + A++
Sbjct: 4 MKFDVVVVGGGLVGASLALALAQSGLRVALL 34
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 31.7 bits (72), Expect = 1.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
P + H +D VVVG+G GL AA G K V+ K
Sbjct: 3 PSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK 39
>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and
metabolism].
Length = 283
Score = 31.1 bits (71), Expect = 1.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+++GAGGA AF L G K +
Sbjct: 129 VLILGAGGAARAVAFALAEAGAKRITVV 156
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 31.4 bits (72), Expect = 1.6
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 23/90 (25%)
Query: 180 GGQAHRCCAVADRT------GHSLLHTLY------GQSLRYDCNYFVEYFALDLIIENGE 227
G H VA G +L++ LY G +RYD L +++G
Sbjct: 114 SGALH----VARTNAFFWGGGKALVNALYRSAERLGVEIRYDAP------VTALELDDGR 163
Query: 228 CKGVIALCLEDGSIHRFNANNTVLATGGYG 257
G A G R A VLA GG+
Sbjct: 164 FVGARA-GSAAGGAERIRAKAVVLAAGGFE 192
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 31.1 bits (71), Expect = 1.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +++G G AGL AA G K +I
Sbjct: 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLI 32
>gnl|CDD|181973 PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.
Length = 476
Score = 31.3 bits (71), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 204 QSLRYDCNYFVEYFALDL-IIENGECKGVIALCLEDGSIH 242
LRY N+F +++ L L I+ENG G I DG+++
Sbjct: 353 AGLRYSLNWFWDHYQLPLFIVENG--FGAIDQREADGTVN 390
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 31.5 bits (72), Expect = 1.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
V+GAG AGL AA+ L G V +
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFER 570
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 31.4 bits (71), Expect = 1.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 39 GDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
G+ V D++ R+ +VVGAG AGL AA L +GF V+
Sbjct: 682 GNHCVLCDSVDRK--------KIIVVGAGPAGLTAARHLQRQGFSVTVL 722
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (pfam00070) [Energy metabolism,
Electron transport].
Length = 299
Score = 30.3 bits (69), Expect = 2.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92
D +++GAG AGL AA K +I P
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLIEGGEP 33
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 30.9 bits (70), Expect = 2.7
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 405 YNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRAC 464
GIP + G + + + I ++ G+A+ G ++++ + GR
Sbjct: 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN---------RGPATIVEAIADGRKA 831
Query: 465 AKTI-AEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTAD 507
A I + E K F N L V KG + D
Sbjct: 832 ANAILSREGLNSDVDKVFPIN----EEVRLAEVYQKKGILVIDD 871
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 30.6 bits (69), Expect = 2.8
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVI 87
++VGAG AGL AA L++ GFK V+
Sbjct: 164 IIVGAGLAGLAAARQLLSFGFKVVVL 189
>gnl|CDD|190791 pfam03912, Psb28, Psb28 protein. Psb28 is a 13 kDa soluble protein
that is directly assembled in dimeric PSII
supercomplexes. The negatively charged N-terminal region
is essential for this process. This protein was formerly
known as PsbW, but PsbW is now reserved for pfam07123.
Length = 108
Score = 28.7 bits (65), Expect = 2.9
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 311 EGGYLINSEGE-----RFMERYA 328
E Y + SE E RFMERYA
Sbjct: 78 EATYEMKSEEEWERFMRFMERYA 100
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 30.4 bits (69), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+D +VVG G AG AA +G +TA++
Sbjct: 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242
>gnl|CDD|213763 TIGR03047, PS_II_psb28, photosystem II reaction center protein
Psb28. Members of this protein family are the Psb28
protein of photosystem II. Two different protein
families, apparently without homology between them, have
been designated PsbW. Cyanobacterial proteins previously
designated PsbW are members of the family described
here. However, while members of the plant PsbW family
are not found (so far) in Cyanobacteria, members of the
present family do occur in plants. We therefore support
the alternative designation that has emerged for this
protein family, Psp28, rather than PsbW [Energy
metabolism, Photosynthesis].
Length = 109
Score = 28.8 bits (65), Expect = 3.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
Query: 311 EGGYLINSEGE-----RFMERYA 328
E Y++ SE E RFMERYA
Sbjct: 78 EAVYIMKSEDEWDRFMRFMERYA 100
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 30.2 bits (69), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+FD +++G G AGL AA G + +I K
Sbjct: 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDK 34
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 30.1 bits (68), Expect = 3.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
++D VVG G G A G +G AVI
Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVI 32
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 30.5 bits (69), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFK 83
D +FD +V+GAG AG+ AA G K
Sbjct: 14 DAEFDVIVIGAGAAGMSAALFAAIAGLK 41
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 29.8 bits (67), Expect = 4.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+VGAG AGL AA+ L G + V K
Sbjct: 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEK 32
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 30.2 bits (69), Expect = 4.4
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGN 110
DA ++G G AG A L G++ + AQG A GN
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEA------DEAPAQG----ASGN 302
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 30.1 bits (68), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+V+G G AG+ AA L GFK ++ K
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEK 155
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 30.2 bits (68), Expect = 4.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
A V+G G GL AA GL G +VI
Sbjct: 139 RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVI 169
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 30.1 bits (68), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112
VV+GAGGAG A+G +G + + + + A GG L ++E
Sbjct: 383 VVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLE 433
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 29.8 bits (67), Expect = 4.6
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDW 116
+ +D +V+G G GL AA A G K ++ + PT T GG +G + +
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60
Query: 117 HW--HMYDTVKGSD---WLGDQDAIH 137
H + +K S W ++ H
Sbjct: 61 HQAALLGQALKDSRNYGWKVEETVKH 86
>gnl|CDD|148279 pfam06577, DUF1134, Protein of unknown function (DUF1134). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 161
Score = 28.7 bits (65), Expect = 5.3
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 354 VGPDKDHVYLQLHHLPP-EDLHQRLPGISETAMIFAGVDVT---REPIPVLP 401
G + V++ +++LP DL+QR PG+ +A + G + R + ++P
Sbjct: 83 FGGNGSRVFMLVYNLPDVNDLYQRFPGVEGSAYLVGGFGMNYLRRGDVVLVP 134
>gnl|CDD|237446 PRK13612, PRK13612, photosystem II reaction center protein Psb28;
Provisional.
Length = 113
Score = 28.0 bits (63), Expect = 5.5
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 311 EGGYLINSEGE-----RFMERYA 328
E Y+ SE E RFMERYA
Sbjct: 81 EATYIWKSEQEWDRFMRFMERYA 103
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 29.8 bits (67), Expect = 5.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITK 89
++ GAG AGL AA L A G+ +I K
Sbjct: 6 LIAGAGVAGLSAALELAARGWAVTIIEK 33
>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase. Glucose dehydrogenase
(GlcDH), a member of the medium chain
dehydrogenase/zinc-dependent alcohol dehydrogenase-like
family, catalyzes the NADP(+)-dependent oxidation of
glucose to gluconate, the first step in the
Entner-Doudoroff pathway, an alternative to or
substitute for glycolysis or the pentose phosphate
pathway. The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossman fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
Length = 355
Score = 29.5 bits (67), Expect = 5.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
A+V+GAG GL AA L GF+ V+ +
Sbjct: 176 ALVLGAGPIGLLAALLLRLRGFEVYVLNR 204
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 29.6 bits (67), Expect = 5.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D VV+GAG G AA G KTAV+ K
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 29.4 bits (66), Expect = 6.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 60 DAVVVGAGGAGLRAAFGL 77
D V+VGAG AGL A+ L
Sbjct: 94 DVVIVGAGSAGLSCAYEL 111
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase.
Length = 404
Score = 29.3 bits (66), Expect = 6.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 275 AMISRAGLPNEDLE---FVQFHPTGIYGAGCLITE-GCRGEGGYLI 316
A L EDL F F T I GA C +T G GE G+ I
Sbjct: 187 AAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEI 232
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 29.5 bits (66), Expect = 7.1
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 37 GQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+ + A S+ D ++D ++G G G AA + G K + T
Sbjct: 95 SEKSLRANGFATSQSMNFSDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFT 146
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 29.2 bits (66), Expect = 7.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 218 ALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFS 262
D+ IE+ E GV L G A+ VLA G GR +F
Sbjct: 196 VEDIEIEDNEVLGVK---LTKGEE--IEADYVVLAPGRSGRDWFE 235
>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding. This domain is
found in fungi, plants, archaea and bacteria.
Length = 104
Score = 27.8 bits (63), Expect = 7.4
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
+VVG G LR L+ G K V++ A+G + E D
Sbjct: 11 LVVGGGEVALRKIRALLEAGAKVTVVSPEIL------EAEGLVRLIQREFEPGD 58
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 28.5 bits (64), Expect = 7.5
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 524 RTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLE 564
R E ++ +M A ++ H +FD ++ N DL E +
Sbjct: 135 RGTEQEEKINKRMEAAEQEFQHYALFDYIIV-NDDLDEAYK 174
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 29.2 bits (66), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +VG G GL A L G + A+I
Sbjct: 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALI 47
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 29.0 bits (66), Expect = 7.7
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 47 AISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
A+ V +++GAGGA L+ G I
Sbjct: 112 ALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIV 153
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 29.2 bits (66), Expect = 8.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D ++VGAG GL A+ G VI
Sbjct: 2 DLIIVGAGILGLAHAYAAARRGLSVTVI 29
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 29.0 bits (65), Expect = 8.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 51 EYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF-PTRSHTVAAQGG 103
E + FD V+GAG G+RAA G K + F P S ++ GG
Sbjct: 18 EANATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGG 71
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 28.9 bits (65), Expect = 8.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVA 99
++ +++G G GL A L G KT VI +L T ++ A
Sbjct: 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKA 43
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 28.9 bits (65), Expect = 8.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
FD ++G G AGL L G + A++
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVN 32
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 29.2 bits (66), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVA 79
D VVGAG +GL AA+ L +
Sbjct: 10 ASSKDVAVVGAGVSGLAAAYALAS 33
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 29.2 bits (66), Expect = 9.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVI 87
AVV+G G GL AA GL G + V+
Sbjct: 148 AVVIGGGLLGLEAARGLKDLGMEVTVV 174
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 28.9 bits (65), Expect = 9.1
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 39 GDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90
G++ + ++ V GAGGAG A L G + I K+
Sbjct: 8 GEANIDLIGRVEGLEGELNRVKTVEKGAGGAGANVAVALARLGGEVTFIGKV 59
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 492
Score = 28.9 bits (65), Expect = 9.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVI 87
VV+GAG AGL AA L G++ ++
Sbjct: 5 VVIGAGIAGLTAAALLAKRGYRVTLL 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,999,703
Number of extensions: 3370304
Number of successful extensions: 3462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3188
Number of HSP's successfully gapped: 181
Length of query: 661
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 558
Effective length of database: 6,369,140
Effective search space: 3553980120
Effective search space used: 3553980120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)