RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15089
(661 letters)
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 1120 bits (2898), Expect = 0.0
Identities = 492/621 (79%), Positives = 555/621 (89%)
Query: 41 SKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAA 100
S SD+IS +YPVVDH+FDAVVVGAGGAGLRAAFGL GF TA +TKLFPTRSHTVAA
Sbjct: 1 STKVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAA 60
Query: 101 QGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRT 160
QGGINAALGNME+D+W WH YDTVKGSDWLGDQDAIHYMT +AP AVIELENYGMPFSRT
Sbjct: 61 QGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRT 120
Query: 161 TDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALD 220
+GKIYQRAFGGQSL++GKGGQAHRCC VADRTGHSLLHTLYG+SLRYD +YFVEYFALD
Sbjct: 121 EEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALD 180
Query: 221 LIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRA 280
L++ENGEC+GVIALC+EDG+IHRF A NTV+ATGGYGR YFSCTSAHT TGDGTAM++RA
Sbjct: 181 LLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRA 240
Query: 281 GLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVV 340
GLP +DLEFVQFHPTGIYGAGCLITEGCRGEGG LINS+GERFMERYAPVAKDLASRDVV
Sbjct: 241 GLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVV 300
Query: 341 SRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVL 400
SRSMTIEIREGRG GP+KDHVYLQLHHLPP+ L RLPGISETAMIFAGVDVT+EPIPVL
Sbjct: 301 SRSMTIEIREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVL 360
Query: 401 PTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVF 460
PTVHYNMGGIPTNYKGQV+THVNG+DK++ GLYA GEA+ +SVHGANRLGANSLLDLVVF
Sbjct: 361 PTVHYNMGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVF 420
Query: 461 GRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYA 520
GRACA TIAE KPG P+ NAGE SVANLD +R A G I T++ RL MQKTMQ++A
Sbjct: 421 GRACALTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHA 480
Query: 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAE 580
AVFRT LQEGC K++ +Y+DLAHLK FDR ++WNTDLVETLELQNLM+ A+QT++ AE
Sbjct: 481 AVFRTGSILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAE 540
Query: 581 NRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRP 640
RKESRGAHARED+K+R+DE DY+KPL+GQ +P EEHWRKHTL+ VDV +GKV + YRP
Sbjct: 541 ARKESRGAHAREDYKLRIDEFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRP 600
Query: 641 VIDKTLDAKECATIAPAIRSY 661
VID+TL+ ++C+++ PAIRSY
Sbjct: 601 VIDRTLNEEDCSSVPPAIRSY 621
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 1029 bits (2662), Expect = 0.0
Identities = 306/611 (50%), Positives = 389/611 (63%), Gaps = 28/611 (4%)
Query: 54 VVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEE 113
+ +FDAVV+GAGGAG+RAA + G A+++K+FPTRSHTV+AQGGI ALGN E
Sbjct: 3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHE 62
Query: 114 DDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQ 173
D+W WHMYDTVKGSD++GDQDAI YM + P+A++ELE+ G+PFSR DG+IYQR FGGQ
Sbjct: 63 DNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQ 122
Query: 174 SLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLII-ENGECKGVI 232
S +G G QA R A ADRTGH+LLHTLY Q+L+ F E++ALDL+ ++G G
Sbjct: 123 SKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCT 181
Query: 233 ALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQF 292
ALC+E G + F A TVLATGG GR Y S T+AH TGDG M RAG+P +D+E QF
Sbjct: 182 ALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQF 241
Query: 293 HPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGR 352
HPTGI GAG L+TEGCRGEGGYL+N GERFMERYAP AKDLA RDVV+RS+ IEIREGR
Sbjct: 242 HPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGR 301
Query: 353 GV-GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIP 411
G GP H L+L HL E L RLPGI E + FA VD +EPIPV+PT HY MGGIP
Sbjct: 302 GCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIP 361
Query: 412 TNYKGQVLT-HVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAE 470
T GQ LT + G+D ++ GL+A GE +C SVHGANRLG NSLLDLVVFGRA + E
Sbjct: 362 TKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421
Query: 471 ENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQ 530
++ + + E+S+ L+ + + +R +Q+ MQ +VFR + +
Sbjct: 422 SIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMA 481
Query: 531 EGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHA 590
+G ++ + + L + ++ D S +NT VE LEL NLM A T +A R ESRGAH+
Sbjct: 482 KGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHS 541
Query: 591 REDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYYRPVIDKTLDAKE 650
R DF R D E+W H+L + + + R V +
Sbjct: 542 RFDFPDRDD-----------------ENWLCHSLYLPESES----MTRRSVNMEPK---L 577
Query: 651 CATIAPAIRSY 661
P IR+Y
Sbjct: 578 RPAFPPKIRTY 588
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 978 bits (2530), Expect = 0.0
Identities = 210/634 (33%), Positives = 308/634 (48%), Gaps = 69/634 (10%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM---EE 113
D++V+G G AGLRAA +G T V++ + RSH+ AAQGG+ A+LGN +
Sbjct: 4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDG 63
Query: 114 DDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGK--------- 164
D+ H DTVKGSDW DQ APKA+ EL +G+P++R G
Sbjct: 64 DNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQK 123
Query: 165 ------------IYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNY 212
I+ R FGG + R C AD TGH++L + + L+ +
Sbjct: 124 TTITEEDFRHGLIHSRDFGGT--------KKWRTCYTADATGHTMLFAVANECLKLGVSI 175
Query: 213 FVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGD 272
A+ LI ++G+C G + L G I + A T++ATGGYGR Y + T+A C G
Sbjct: 176 QDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGT 235
Query: 273 GTAMISRAGLPN-EDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVA 331
GTA+ G+ ++E VQFHPT ++ +G L+TEGCRG+GG L + +G RFM Y P
Sbjct: 236 GTAIALETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEK 295
Query: 332 KDLASRDVVSRSMTIEIREGRGV-GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGV 390
K+LASRDVVSR M IR+G+GV P H++L + L + + L + E FAG+
Sbjct: 296 KELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGI 355
Query: 391 DVTREPIPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLG 450
D + PVLP HY+MGGI T+Y+G+ + GL++AGEA+C +HG NRLG
Sbjct: 356 DPAEKWAPVLPMQHYSMGGIRTDYRGEA---------KLKGLFSAGEAACWDMHGFNRLG 406
Query: 451 ANSLLDLVVFGRACAKTIAE--ENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADL 508
NS+ + VV G + AE N + A + + +KG +
Sbjct: 407 GNSVSEAVVAGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKI 466
Query: 509 RLTMQKTMQTYAAVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNL 568
+ M+ M +FR L++ ++ LYK ++ + ++ L N +L E + +
Sbjct: 467 KNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMM 526
Query: 569 MINAIQTMFAAENRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTD-V 627
+ A+ A +R ESRGAH RED+ R D +W TL
Sbjct: 527 LKVALCVAKGALDRTESRGAHNREDYPKRDD-----------------INWLNRTLASWP 569
Query: 628 DVNTGKVKIYYRPVIDKTLDAKECATIAPAIRSY 661
+ + Y + + IAP R Y
Sbjct: 570 NPEQTLPTLEYEALDVNEM------EIAPGYRGY 597
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 939 bits (2430), Expect = 0.0
Identities = 234/623 (37%), Positives = 325/623 (52%), Gaps = 63/623 (10%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEG--FKTAVITKLFPTRSHTVAAQGGINAALGNMEED 114
Q D +VGAGGAGLRAA K A+I+K++P RSHTVAA+GG A + D
Sbjct: 4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH--D 61
Query: 115 DWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQS 174
+ +H +DTV G DWL +QD + Y P + +LE +G P+SR DG + R FGG
Sbjct: 62 SFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK 121
Query: 175 LKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY-DCNYFVEYFALDLIIENGECKGVIA 233
R AD+TG +LHTL+ SL++ F E+F LD+++++G +G++A
Sbjct: 122 --------IERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVA 173
Query: 234 LCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFH 293
+ + +G++ + AN V+ATGG GR Y T+ TGDG M G+P D+EFVQ+H
Sbjct: 174 MNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYH 233
Query: 294 PTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPV-----------AKDLASRDVVSR 342
PTG+ G+G L+TEGCRGEGG L+N G R+++ Y +L RD VS+
Sbjct: 234 PTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQ 293
Query: 343 SMTIEIREGRGVG-PDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLP 401
+ E R+G + P D VYL L HL + LH+RLP I E A + GVD +EPIPV P
Sbjct: 294 AFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRP 353
Query: 402 TVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFG 461
T HY MGGI T+ + I GL+A GE S +HGANRLG+NSL +LVVFG
Sbjct: 354 TAHYTMGGIETDQNCET---------RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFG 404
Query: 462 RACAKTIAEENKPGAPIKPFAANAG-ESSVANLDWVRHAKGDITTADLRLTMQKTMQTYA 520
R + E A A L + + G A +R M M+
Sbjct: 405 RLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGC 464
Query: 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAE 580
++RT E +Q+ +K+A L + +++ D S ++NTDL+ T+EL + + A +A
Sbjct: 465 GIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAM 524
Query: 581 NRKESRGAHAR--EDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVDVNTGKVKIYY 638
RKESRGAH R E R D ++ KHTL D + G ++ Y
Sbjct: 525 ARKESRGAHQRLDEGCTERDD-----------------VNFLKHTLAFRDAD-GTTRLEY 566
Query: 639 RPVIDKTLDAKECATIAPAIRSY 661
V TL PA R Y
Sbjct: 567 SDVKITTL--------PPAKRVY 581
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 706 bits (1824), Expect = 0.0
Identities = 129/677 (19%), Positives = 222/677 (32%), Gaps = 116/677 (17%)
Query: 42 KVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAF----GLVAEGFKTAVITKLFPTRSHT 97
K + E P + D +++G G +G AA+ G K ++ K RS
Sbjct: 6 KKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA 65
Query: 98 VAAQG-GINAALGNMEEDDWHWHMYDTV----KGSDWLGDQDAIHYMTREAPKAVIELEN 152
VA IN + + + D V L +D + R V E
Sbjct: 66 VAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEK 125
Query: 153 YGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNY 212
+G+P +T DGK Y R Q + +G+ + A G N
Sbjct: 126 WGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAAKMAVGEE--------------NI 170
Query: 213 FVEYFALDLIIENGE---CKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTS---- 265
+ F +L+ +N + G + + + + F A +LATGG + ++
Sbjct: 171 YERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAA 230
Query: 266 -----AHTCTGDGTAMISRAGLPNEDLE--FVQFHPTGIYGAGCLITEGCRGEGGYLINS 318
A TG G M +AG E F+ F YG + N+
Sbjct: 231 GRTWYAIFDTGSGYYMGLKAGAMLTQFEHRFIPFRFKDGYG---PVGAWFLFFKCKAKNA 287
Query: 319 EGERF-------MERYAP-VAKDLASRDVVSRSMTIEIREGRG-VGPDKDH--------V 361
GE + +E+Y P A + + + +EI +G + +
Sbjct: 288 YGEEYIKTRAAELEKYKPYGAAQPIPTPLRNHQVMLEIMDGNQPIYMHTEEALAELAGGD 347
Query: 362 YLQLHHLPPEDLHQRLPGISETAMIFA--GVDVTREPIPVLPTVHYNMGGIPTNYKGQVL 419
+L H+ E L A+++A +D +P P Y MG V
Sbjct: 348 KKKLKHIYEEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVC 407
Query: 420 THV--------------NGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACA 465
+ + GL+A G+ + ++ H + + S + + +A
Sbjct: 408 GPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPH---KFSSGSFTEGRIAAKAAV 464
Query: 466 KTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLR----------LTMQKT 515
+ I E+ + + A ++ K T D+ + +QK
Sbjct: 465 RFILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKI 524
Query: 516 MQTYAA----VFRTQE-TLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMI 570
M YAA +++T E LQ +A L +DL L D +L+ EL + +
Sbjct: 525 MDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLH-----ELMRAWELVHRVW 579
Query: 571 NAIQTMFAAENRKESR--GAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVD 628
A + RKE+R G + R D+ D E W+ + D
Sbjct: 580 TAEAHVRHMLFRKETRWPGYYYRTDYPELND-----------------EEWKCFVCSKYD 622
Query: 629 VNTGKVKIYYRPVIDKT 645
+ P +
Sbjct: 623 AEKDEWTFEKVPYVQVI 639
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 578 bits (1492), Expect = 0.0
Identities = 122/689 (17%), Positives = 196/689 (28%), Gaps = 119/689 (17%)
Query: 40 DSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVA 99
+ E +V+H D ++VG G AAF V K A K+ ++
Sbjct: 4 SKETPRGVAIAEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE 63
Query: 100 AQG-------GINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELEN 152
G IN LG+ DD+ + + G L +D I+ + R +V E
Sbjct: 64 RSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMG---LVREDLIYDLGRHVDDSVHLFEE 120
Query: 153 YGMPFSRTTDGKIY----QRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRY 208
+G+P + Q G+SL+ G G S + +
Sbjct: 121 WGLPVWIKDEHGHNLDGAQAKAAGKSLRNG-DKPVRSGRWQIMINGESYKVIVAEAAKNA 179
Query: 209 --DCNYFVEYFALDLII---ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY--- 260
F + L++ G + L +H F AN V+A GG Y
Sbjct: 180 LGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRPR 239
Query: 261 ------FSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGY 314
G M ++ G +E +F P +
Sbjct: 240 SVGEGMGRAWYPVWNAGSTYTMCAQVGAEMTMMEN-RFVPARFKDGYGPVGAWFLLFKAK 298
Query: 315 LINSEGERFMERYAPVAK----------DLASRDVVSRSMTIEIREGRGV---------- 354
N +GE + + K + + + M E+REGRG
Sbjct: 299 ATNCKGEDYCATNRAMLKPYEERGYAKGHVIPTCLRNHMMLREMREGRGPIYMDTKTALQ 358
Query: 355 GPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFA--GVDVTREPIPVLPTVHYNMGG--- 409
Q HL E L A ++A ++PT Y +G
Sbjct: 359 TSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPEERGSEIMPTEPYLLGSHSG 418
Query: 410 -------------IPTNYKGQVLTHVN-GQDKIIHGLYAAGEASCSSVHGANRLGANSLL 455
+P +YK + + + GL+ + +S H G++
Sbjct: 419 CCGIWASGPDEAWVPEDYKVRAANGKVYNRMTTVEGLWTCADGVGASGHKF-SSGSH--- 474
Query: 456 DLVVFGRACAKTIAEENKPGAPIKP----FAANAGESSVANLDWVRHAKGD--------- 502
GR K + KP A KG
Sbjct: 475 ---AEGRIVGKQMVRWYLDHKDFKPEFVETAEELKTLIYRPYYNYEKGKGASTCPVVNPE 531
Query: 503 -ITTADLRLTMQKTMQTYAAVFRT-----QETLQEGCNKMAALYKDLAHLKVFDRSLIWN 556
I+ + + + K Y T + L G M L +D L D
Sbjct: 532 YISPKNFMMRLIKCTDEYGGGVGTYYNTSKALLDTGFWLMEMLEEDSLKLAARD-----L 586
Query: 557 TDLVETLELQNLMINAIQTMFAAENRKESR--GAHAREDFKVRVDELDYAKPLEGQVPKP 614
+L+ E + + M R+ESR G + R DF D
Sbjct: 587 HELLRCWENYHRLWTVRLHMQHIAFREESRYPGFYYRADFLGLDD--------------- 631
Query: 615 IEEHWRKHTLTDVDVNTGKVKIYYRPVID 643
W+ + D + KI+ +P
Sbjct: 632 --SKWKCFVNSKYDPAKKETKIFKKPYYQ 658
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 493 bits (1272), Expect = e-169
Identities = 120/487 (24%), Positives = 200/487 (41%), Gaps = 78/487 (16%)
Query: 41 SKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAA 100
+K KS+ + D VVVG+GGAG AA G K +I K + A
Sbjct: 109 AKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA 168
Query: 101 QGGINAALGNME-----EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGM 155
GG+NAA + + D DT+KG + D + ++ + +V + G
Sbjct: 169 AGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGA 228
Query: 156 PFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215
+ GG S+ +AHR G ++ LY +++ + + +
Sbjct: 229 DLTDVG-------MMGGASVN-----RAHRPTG-GAGVGAHVVQVLYDNAVKRNIDLRMN 275
Query: 216 YFALDLII-ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAY------------FS 262
++++ + G KG++ + G + A+ +LATGG+ + F
Sbjct: 276 TRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDPSLKGFI 334
Query: 263 CTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGER 322
T+ GDG + AG +D++++Q HPT G ++TE RG G L+N EG+R
Sbjct: 335 STNQPGAVGDGLDVAENAGGALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKR 394
Query: 323 FMERYAPVAKDLASRDVVSRSM---------------------TIEIREGRGVGPDKDHV 361
F+ RD S ++ I+ G GV P D +
Sbjct: 395 FVNEITT-------RDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSL 447
Query: 362 Y--LQLHHLPPEDLHQRLPGISETAMIFAGVDVTREP------------IPVLPTVHYNM 407
++ + + L + + + D R I V P VH+ M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKT 467
GG+ + K +V+ N + ++I GLY AGE + VHGANRLG N++ D++ FGR +
Sbjct: 508 GGVMIDTKAEVM---NAKKQVIPGLYGAGEVTG-GVHGANRLGGNAISDIITFGRLAGEE 563
Query: 468 IAEENKP 474
A+ +K
Sbjct: 564 AAKYSKK 570
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 441 bits (1136), Expect = e-148
Identities = 164/588 (27%), Positives = 254/588 (43%), Gaps = 73/588 (12%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
+H D +++G+G AGL A L A+ + V++K T T AQGGI A E D
Sbjct: 6 EHSCDVLIIGSGAAGLSLALRL-ADQHQVIVLSKGPVTEGSTFYAQGGIAAVFD--ETDS 62
Query: 116 WHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTT----DGKIYQRAFG 171
H+ DT+ + D+ A+ ++ A V L + G+ F + + G
Sbjct: 63 IDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREG 122
Query: 172 GQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE-YFALDLIIENG---- 226
G S R AD TG + TL ++L + +E A+DLI+ +
Sbjct: 123 GHS--------HRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLP 174
Query: 227 ---ECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLP 283
G ++ +A VLATGG + Y T+ +GDG AM RAG
Sbjct: 175 GTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCR 234
Query: 284 NEDLEFVQFHPTGIYGAGC---LITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVV 340
+LEF QFHPT +Y L+TE RGEG YL +G RFM + +LA RD+V
Sbjct: 235 VANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERG-ELAPRDIV 293
Query: 341 SRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVL 400
+R++ E++ D ++L + H P + + Q P I E + G+D+T+EP+P++
Sbjct: 294 ARAIDHEMKRLGA-----DCMFLDISHKPADFIRQHFPMIYEKLLGL-GIDLTQEPVPIV 347
Query: 401 PTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVF 460
P HY GG+ + G+ T V GLYA GE S + +HGANR+ +NSLL+ +V+
Sbjct: 348 PAAHYTCGGVMVDDHGR--TDVE-------GLYAIGEVSYTGLHGANRMASNSLLECLVY 398
Query: 461 GRACAKTIAEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYA 520
G + A+ I I + V + + ++ M Y
Sbjct: 399 GWSAAEDITRRMPYAHDISTLPP-------WDESRVENPDERVVIQHNWHELRLFMWDYV 451
Query: 521 AVFRTQETLQEGCNKMAALYKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAE 580
+ RT + L+ ++ L +++ R LEL+NL+ A + A
Sbjct: 452 GIVRTTKRLERALRRITMLQQEIDEYYAHFRV------SNNLLELRNLVQVAELIVRCAM 505
Query: 581 NRKESRGAHAREDFKVRVDELDYAKPLEGQVPKPIEEHWRKHTLTDVD 628
RKESRG H D+ P+ H L+ +
Sbjct: 506 MRKESRGLHFTLDY-----------------PEL-LTHSGPSILSPGN 535
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 419 bits (1080), Expect = e-141
Identities = 151/570 (26%), Positives = 237/570 (41%), Gaps = 102/570 (17%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMY 121
++G+G AGL A L K + T A+GG+ A++G +D H
Sbjct: 3 YIIGSGIAGLSAGVAL-RRAGKKVTLISKRIDGGSTPIAKGGVAASVG--SDDSPELHAQ 59
Query: 122 DTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGG 181
DT++ D L D ++Y+T EA + E++G F R GG +
Sbjct: 60 DTIRVGDGLCDVKTVNYVTSEAKNVIETFESWGFEFEED------LRLEGGHT------- 106
Query: 182 QAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSI 241
R D TG + + L R + +E +++ +++G+ G + +
Sbjct: 107 -KRRVLHRTDETGREIFNFLLKL-AREEGIPIIEDRLVEIRVKDGKVTGFVT----EKRG 160
Query: 242 HRFNANNTVLATGGYGRAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIY--G 299
+ + VLATGGY Y ++ T GDG A+ +AG D+EFVQFHPT G
Sbjct: 161 LVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDG 220
Query: 300 AGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKD 359
L+TE RGEG +IN GERF+ Y +LA RD++SR++ IE+ +G
Sbjct: 221 EVFLLTETLRGEGAQIINENGERFLFNYDKRG-ELAPRDILSRAIYIEMLKG-------H 272
Query: 360 HVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQVL 419
V++ L + ED ++ P +++ G + + IP+ P H+ GGI N +G+
Sbjct: 273 KVFIDLSKI--EDFERKFPVVAKYLARH-GHNY-KVKIPIFPAAHFVDGGIRVNIRGE-- 326
Query: 420 THVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIK 479
++ I LYA GE S S +HGANRL +NSLL+ +VFG + + + +
Sbjct: 327 SN-------IVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDSSWEGISTDD 379
Query: 480 PFAANAGESSVANLDWVRHAKGDITTADLRLTMQKTMQTYAAVFRTQETLQEGCNKMAAL 539
+ S L +++ + R +E L + N ++
Sbjct: 380 GIVHSVRISGNKTLSLKE--------------IRRINWENVGIIRNEEKLVKAINTYSS- 424
Query: 540 YKDLAHLKVFDRSLIWNTDLVETLELQNLMINAIQTMFAAENRKESRGAHAREDFKVRVD 599
QN I + T AAE RKESRG H RED+
Sbjct: 425 ------------------------STQNEAIISYLTALAAEIRKESRGNHFREDY----- 455
Query: 600 ELDYAKPLEGQVPKPIEEHWRKHTLTDVDV 629
P + +W K + V
Sbjct: 456 ------------PYK-DPNWEKRIYFKLVV 472
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 392 bits (1008), Expect = e-129
Identities = 115/486 (23%), Positives = 198/486 (40%), Gaps = 77/486 (15%)
Query: 41 SKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAA 100
K+ V D V++G+GGAGL AA G K ++ K +T A
Sbjct: 109 DADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLA 168
Query: 101 QGGINAALGNME-----EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGM 155
GG+NAA + ED + DT+KG + D + + + + ++ L + G
Sbjct: 169 AGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGA 228
Query: 156 PFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVE 215
+ GG S+ +HR G + L+ +++ + +
Sbjct: 229 DMTD-------VGRMGGASVNR-----SHRP-TGGAGVGAHVAQVLWDNAVKRGTDIRLN 275
Query: 216 YFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTVLATGGYGR------------AYFS 262
+ ++ + +G+ GV+ E + A+ V+A GG+ + F
Sbjct: 276 SRVVRILEDASGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFK 334
Query: 263 CTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGER 322
T+ TGDG + +AG DL+++Q HPT G +ITE RG G ++N EG R
Sbjct: 335 ATNHPGATGDGLDVALQAGAATRDLQYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNR 394
Query: 323 FMERYAPVAKDLASRDVVSRSMTIEIREG----------RGVGPDKDHVYLQLHH----- 367
FM ++ +RD S ++ + E + + + +V+L +
Sbjct: 395 FMN-------EITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTI 447
Query: 368 --------LPPEDLHQRLPGISETAM---------IFAGVDVTREP---IPVLPTVHYNM 407
+P +L + + + ++ P + + P VH+ M
Sbjct: 448 EELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTM 507
Query: 408 GGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKT 467
GG+ + K +V + K I GLYAAGE + VHGANRLG N++ D+V +GR +
Sbjct: 508 GGLVIDTKAEVKSEKTA--KPITGLYAAGEVTG-GVHGANRLGGNAISDIVTYGRIAGAS 564
Query: 468 IAEENK 473
A+ K
Sbjct: 565 AAKFAK 570
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 246 bits (631), Expect = 9e-74
Identities = 114/497 (22%), Positives = 186/497 (37%), Gaps = 93/497 (18%)
Query: 38 QGDSKVKSDAISREYPVV-DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSH 96
D D I + +VVGAG AG A+ G ++ K + +
Sbjct: 100 SWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 159
Query: 97 TVAAQGGINAALGNM-----EEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELE 151
++ + GG+NA ED W + D +KG D + + ++ V LE
Sbjct: 160 SMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLE 219
Query: 152 NYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCN 211
+ G GG + HR +G ++ TL + +
Sbjct: 220 SLGANLDDLK-------RSGGARVDRT-----HRP-HGGKSSGPEIIDTLRKAAKEQGID 266
Query: 212 YFVEYFALDLII-ENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR------------ 258
+ + L++ ++ G + + + A + VLATGGYG
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTM 325
Query: 259 AYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINS 318
+ ++ T TGDG M G D+++VQ HPT + LI+E RG G ++N
Sbjct: 326 KDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAHPTVGKDSRILISETVRGVGAVMVNK 385
Query: 319 EGERFMERYAPVAKDLASRDVVSRSM---------------TIEIREGRGVGPDKDHVYL 363
+G RF+ +L +RD S ++ + + + +Y
Sbjct: 386 DGNRFIS-------ELTTRDKASDAILKQPGQFAWIIFDNQLYKKAKMVRGYDHLEMLYK 438
Query: 364 --------QLHHLPPEDLHQRLPGISET-----AMIFAGVD-----------VTREP--- 396
+ + DL ++T + +G D +T+ P
Sbjct: 439 GDTVEQLAKSTGMKVADL-------AKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYA 491
Query: 397 IPVLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLD 456
+ V P +H+ MGG+ N VL + Q K I GL+AAGE + VHG NRLG N++ D
Sbjct: 492 VKVAPGIHHTMGGVAINTTASVL---DLQSKPIDGLFAAGEVTG-GVHGYNRLGGNAIAD 547
Query: 457 LVVFGRACAKTIAEENK 473
VVFGR A+
Sbjct: 548 TVVFGRIAGDNAAKHAL 564
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 111 bits (280), Expect = 4e-26
Identities = 53/328 (16%), Positives = 92/328 (28%), Gaps = 58/328 (17%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME--- 112
D++ D VV G G AG+ A+ G V+ + T A G I G
Sbjct: 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKA 98
Query: 113 ---EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRA 169
+D + D++ I + + L + G+PF + G+
Sbjct: 99 CGFDDSPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEP 158
Query: 170 FGGQSLKYGKG---GQAHRCCAVADRT---------------GHSLLHTLYGQSLRYDCN 211
L Y G + A A R G+ L+ L + +
Sbjct: 159 PFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETAEKLGVR 218
Query: 212 YFVEYFALDLIIE-NGECKGVIALCLEDGSIHRFNANNTV-LATGGYGR----------- 258
+ L+ + G G++A + G A V LATG +
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVA--KQYGKEVAVRARRGVVLATGSFAYNDKMIEAHAPR 276
Query: 259 -AYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLIN 317
+ G M G ++ + + G L+N
Sbjct: 277 LIGRPGAAIEEHDGRSILMAQALGADLAHMDATEVAFVC---------DPQLIVRGILVN 327
Query: 318 SEGERFM-ERYAPVAKDLASRDVVSRSM 344
G+R++ E + +
Sbjct: 328 GRGQRYVPE--------DTYSGRIGQMT 347
Score = 85.1 bits (211), Expect = 1e-17
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 399 VLPTVHYNMGGIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLV 458
T+ + +GG+ T +VL + + I GL+AAG + V SL D
Sbjct: 441 RGFTLGFTLGGLRTTVNSEVL---HVSGEPIPGLFAAGRCTSG-VCAGGYASGTSLGDGS 496
Query: 459 VFGRACAKTIAEE 471
+GR + A++
Sbjct: 497 FYGRRAGISAAKQ 509
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 5e-08
Identities = 95/582 (16%), Positives = 161/582 (27%), Gaps = 190/582 (32%)
Query: 17 PLNGSFGSI---IGV-KQFHFTIHGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLR 72
PL S GS+ + V F + K E D + L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA------ELV 61
Query: 73 AAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGD 132
F L G+ ++++ + V +N L E + +L
Sbjct: 62 GKF-L---GYVSSLVEPSKVGQFDQV-----LNLCLTEFE--------------NCYLEG 98
Query: 133 QDAIH----YMTREAPKAVIE----LENY-------GMPFSRTTDGKIYQRA-------- 169
D IH + +E +++ ++NY PF + ++ +++
Sbjct: 99 ND-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 170 --FGGQ--SLKYGK---------GGQAHRCCAVADRTGHSLLHT------LYGQSL---- 206
FGGQ + Y + + T L+ T ++ Q L
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 207 -------RYDCNYFVEY-FALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGR 258
D +Y + + LI GVI L H + T G R
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLI-------GVIQLA------HYVVTAKLLGFTPGELR 264
Query: 259 AYFSCTSAHTCTGDG--TAMISRAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGY-- 314
+Y + H G TA+ E F + L G R Y
Sbjct: 265 SYLKGATGH---SQGLVTAVAIAETDSWES-----FFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 315 -----------LINSEGE-RFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVY 362
L N+EG M L+ ++ + + + P V
Sbjct: 317 TSLPPSILEDSLENNEGVPSPM---------LSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 363 LQLH----HL----PPEDLHQRLPGISETAMIFAGVDVTREPI----PV-----LP-TVH 404
+ L +L PP+ L+ L A +G+D +R P LP
Sbjct: 368 ISLVNGAKNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 405 YN--------------MGGIPTNYKGQVL------THVNGQD------KIIHGLYAAGEA 438
++ + ++ + + T +G D I +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISERI--VDCI 483
Query: 439 SCSSVH--GANRLGANSLLDLVVFGRACAKTIA---EENKPG 475
V + A +LD FG A + NK G
Sbjct: 484 IRLPVKWETTTQFKATHILD---FGPGGASGLGVLTHRNKDG 522
Score = 50.8 bits (121), Expect = 1e-06
Identities = 93/592 (15%), Positives = 151/592 (25%), Gaps = 248/592 (41%)
Query: 90 LFPTRSHTVAAQ------GGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREA 143
L PT S +A+Q + DD
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADD---------------------------E 53
Query: 144 PKAVIELENYGMPFSRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYG 203
P EL + F L Y V+ +
Sbjct: 54 PTTPAEL------VGK----------F----LGY-----------VSSLV-EPSKVGQFD 81
Query: 204 QSLRYDCNYFVEYFALDLIIENGECKGVIALCLEDGSIHRFNAN------NTVLATGGYG 257
Q L F + LE IH A T++ T
Sbjct: 82 QVLNLCLTEFENCY------------------LEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 258 RAYFSCTSAHTCTGDGTAMISRAGLPNEDLEFVQFHPTGIYGA-GCLITEGCRGEGGYLI 316
+ Y + A S + L V + G G+G
Sbjct: 124 KNYIT---ARIMAKRPFDKKSNSAL----FRAVGEGNAQLVAIFG--------GQG---- 164
Query: 317 NSEGERFME------RYAPVAKDLASR------DVVSRSMTIEIREGRGV-------GPD 357
N++ + F E Y + DL +++ ++ E +G+ P
Sbjct: 165 NTD-DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 358 K--DHVYL-------------QLHH---------LPPEDLHQRLPGISE------TAMIF 387
D YL QL H P +L L G + TA+
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 388 AGVDVTRE------------------------PIPVLP--TVHY---NMGGIPT---NYK 415
A D + E P LP + N G+P+ +
Sbjct: 284 AETD-SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 416 G----QVLTHVNGQDKIIHGLYAAGEASCSSVHGANRL---G-ANSLLDLVVFGR-ACAK 466
QV +V +K L A + S V+GA L G SL L + R A A
Sbjct: 343 NLTQEQVQDYV---NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 467 TIAEENK-PGA-----------PIK-PF-------AANAGESSVANLDWVRHAKGDITTA 506
+ ++++ P + P+ PF A++ + +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV------SFNAK 453
Query: 507 DLRLTMQKTMQTYAAVFRTQ--ETLQEGCNKMA-ALYKDLAHLKVFDRSLIW 555
D+++ V+ T L+ ++ + + L V W
Sbjct: 454 DIQIP----------VYDTFDGSDLRVLSGSISERIVDCIIRLPVK-----W 490
Score = 45.4 bits (107), Expect = 6e-05
Identities = 74/511 (14%), Positives = 145/511 (28%), Gaps = 175/511 (34%)
Query: 7 VPSLLSK----CANPL----NGSFGSII--GVKQFHFT------IH-------GQGDSKV 43
L+ K ++ + G F ++ + +F IH + D+ +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 44 -KSDAISREY---------PVVDHQFDAVV--VGAGGAGLRAAFG-----------LVAE 80
K+ + + Y P A+ VG G A L A FG L +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RD 175
Query: 81 GFKT--AVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIH- 137
++T ++ L +A+ ++ + + + +WL +
Sbjct: 176 LYQTYHVLVGDLI-----KFSAETLSELIRTTLDAEKVFTQGLNIL---EWLENPSNTPD 227
Query: 138 --YMTREAPKA-----VIELENYGMPFSRT---TDGKIYQRAFGGQSLKYGKGGQAHRCC 187
Y+ P + VI+L +Y + ++ T G++ G + + +G
Sbjct: 228 KDYLLS-IPISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKG--ATGHSQGLVTAVAI 283
Query: 188 AVAD------RTGHSLLHTLYGQSLRYDCNYFVEYFALDLI---IENGE--------CKG 230
A D + + L+ +R Y ++ +EN E
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 231 VIALCLEDGSIHRFN----------------ANNTVLATGGYGRA-YFSCTSAHTCTGDG 273
+ ++D +++ N A N V++ G ++ Y +
Sbjct: 344 LTQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPS 400
Query: 274 TAMISRAGLPNEDLEFV-QFHPTGI-----Y--GAGCLITEGCRGEGGYLINSEGERFME 325
SR L+F +F P A LI + ++ +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN---VSFNAKDIQ- 456
Query: 326 RYAPV-----AKDL--ASRDVVSR-----------------------------------S 343
PV DL S + R
Sbjct: 457 --IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 344 MTIEIREGRGV----------GPDKDHVYLQ 364
+T ++G GV PD D+ + Q
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 2e-05
Identities = 74/588 (12%), Positives = 147/588 (25%), Gaps = 212/588 (36%)
Query: 48 ISREYPV---------VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTV 98
+SR P + + ++ G G+G + + + +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMD------ 181
Query: 99 AAQGGINAALGNMEEDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIE-LENYGMPF 157
I W ++ +P+ V+E L+
Sbjct: 182 ---FKI------------FW-----------------LNLKNCNSPETVLEMLQK----L 205
Query: 158 SRTTDGKIYQRAFGGQSLKYGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCNYFVEYF 217
D R+ ++K R ++ L Y L
Sbjct: 206 LYQIDPNWTSRSDHSSNIK-------LRIHSIQAELRRLLKSKPYENCL----------- 247
Query: 218 ALDL-------IIE--NGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAHT 268
L L N CK ++ RF L+ S
Sbjct: 248 -LVLLNVQNAKAWNAFNLSCKILL--------TTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 269 CTGDGTAMISR-AGLPNEDL--EFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFME 325
+ +++ + +DL E + +P + +I E R + +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL----SIIAESIR--------DGLATW-D 345
Query: 326 RYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHVYLQLHHLPPEDLHQRLPGISETAM 385
+ V D + IE L+ L P + + +S
Sbjct: 346 NWKHVNCD-------KLTTIIES---------------SLNVLEPAEYRKMFDRLS---- 379
Query: 386 IF-AGVDVTREPIPVLPTVHYNMGGIPTNYKGQVLTH------VNGQDK----IIHGLYA 434
+F + P +L + +++ + V+ V Q K I +Y
Sbjct: 380 VFPPSAHI---PTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 435 AGEASCS---SVHGANRLGANSLLDLVVFGRACAKTIAEENKPGAPIKP----------- 480
+ ++H S++D + + + P
Sbjct: 434 ELKVKLENEYALH-------RSIVDHYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHL 481
Query: 481 FAANAGESSVA------NLDW----VRH------AKGDI--TTADLRLTMQKTMQTYAAV 522
E + + +RH A G I T L+ Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--------Y--- 530
Query: 523 FRTQETLQEGCNKMAALYKDLAH-LKVFDRSLIWN--TDLVETLELQN 567
+ + + K L + L + +LI + TDL+ + L
Sbjct: 531 ---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMA 574
Score = 36.4 bits (83), Expect = 0.041
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 534 NKMAALYKDLAHLKVFDRSLIWNTDLVETLE-LQNLMINA-IQTMFAAENRKE------- 584
+ YKD+ L VF+ + + N D + + ++++ I + +++
Sbjct: 12 GEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 585 ---SRGAHAREDFKVRVDELDY---AKPL--EGQVPKPIEEHW---RKHTLTDVDVNTGK 633
S+ + F V ++Y P+ E + P + + R D V
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---- 125
Query: 634 VKIYYRPVIDKTLDAKEC 651
Y + L ++
Sbjct: 126 FAKYNVSRLQPYLKLRQA 143
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 43.3 bits (101), Expect = 2e-04
Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 7/137 (5%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112
P +D ++D V+VG+G G A LV G+K A+ S N
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG-EIDSGLKIGAHKKNTVEYQKN 99
Query: 113 EDDWHW----HMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQR 168
D + + + L + + V N R G+ R
Sbjct: 100 IDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTR 159
Query: 169 AFGGQSLKYGKGGQAHR 185
GG S + R
Sbjct: 160 VVGGMSTAW--TCATPR 174
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 41.2 bits (97), Expect = 0.001
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 28 VKQFHFTIHGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V+ +D ++ + +D +V+G G GL A G KTAV+
Sbjct: 77 VRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVL 136
Query: 88 TKLFPTRSHTVAAQGG 103
+ PT T GG
Sbjct: 137 DYVEPTPIGTTWGLGG 152
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.6 bits (95), Expect = 0.002
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ ++D +++G G AG AA+ L G K ++
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLV 35
Score = 29.8 bits (67), Expect = 3.1
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 212 YFVEYFALDLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254
+ A+ I E+G KG + + V ATG
Sbjct: 117 IWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATG 159
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 39.8 bits (93), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+DA+VVG G +GL+AA L G K ++
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLL 30
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 39.5 bits (93), Expect = 0.003
Identities = 20/72 (27%), Positives = 27/72 (37%)
Query: 32 HFTIHGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91
H H G S E + +D +++G G GL AA G K V+ +
Sbjct: 6 HHHHHSSGLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT 65
Query: 92 PTRSHTVAAQGG 103
PT T GG
Sbjct: 66 PTPLGTRWGLGG 77
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 39.3 bits (90), Expect = 0.003
Identities = 54/344 (15%), Positives = 83/344 (24%), Gaps = 46/344 (13%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNME 112
+ FD VV+GAG G AF L +L P RS + +GG+ G
Sbjct: 31 HFTEEAFDIVVIGAGRMGAACAFYL----------RQLAPGRSLLLVEEGGLPNEEGATI 80
Query: 113 EDDWHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTTDGKIYQRAFGG 172
W D G + + + +E+E+ +
Sbjct: 81 LAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLD 140
Query: 173 QSLKYGKGG----QAHRCCAVADRTGHSLLHTLYGQSLRYDC---------NYFVEYFAL 219
+ + A A D + N E
Sbjct: 141 ALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPG 200
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFS-CTSAHTCTGDGTAMIS 278
+ + + + + R A ++A G G A HT G
Sbjct: 201 GVRLHRLTVTNTHQIVVHETRQIR--AGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFP 258
Query: 279 RAGLPNEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRD 338
R L +T + G L+ + R Y P L
Sbjct: 259 RLDLL--------SGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVP 310
Query: 339 VVSRSMTIE------------IREGRGVGPDKDHVYLQLHHLPP 370
R +E EG +G V LP
Sbjct: 311 TGLRRELLEDLVGLMDAVPALAGEGLELGRSSADVPGAWLALPG 354
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 39.2 bits (92), Expect = 0.004
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +VVG G G AA G KT +I
Sbjct: 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMI 33
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 39.0 bits (92), Expect = 0.005
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ V+G+GGA + AA V +G + +I
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLI 33
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 38.7 bits (91), Expect = 0.005
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGI 104
++AVV+G G G A+ L E TA+ T AA G +
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGML 63
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 38.1 bits (88), Expect = 0.008
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWH 117
++VGAG +G L +G + +I + R H GG N+ E +
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ----RDHI----GG-NSYDARDSETNVM 53
Query: 118 WHMY 121
H+Y
Sbjct: 54 VHVY 57
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 37.2 bits (87), Expect = 0.013
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHM 120
V VGAGG G A+ LV G + + L +R+ +A + D +
Sbjct: 130 VVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDAR-GI 188
Query: 121 YDTVKGSD 128
D + +D
Sbjct: 189 EDVIAAAD 196
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 37.7 bits (88), Expect = 0.013
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
++DA+ +G G AG + L A G + ++ +
Sbjct: 43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR 74
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 37.5 bits (87), Expect = 0.014
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI--TKLFPTRSHTVAAQGGINAALGNM 111
++ D VVVG G +G+ AA L G V+ R++T+ Q LG
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGS 59
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 37.0 bits (86), Expect = 0.018
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
Q D +VGAG +GL AA L G AVI
Sbjct: 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVI 34
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics,
northeast structural genomics consortiu PSI-biology; NMR
{Lactobacillus plantarum}
Length = 160
Score = 35.4 bits (82), Expect = 0.020
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 8/52 (15%)
Query: 293 HPTGIYGAGCLITEGCRGEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM 344
P ++ G +NS+G+R + + ++
Sbjct: 3 EPGVAKLTT-YASKQATDMGAIYVNSKGDRIVN-------ESNVYTTFRNAI 46
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 36.6 bits (85), Expect = 0.020
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI--TKLFPTRSHTVAAQGGINAALGNME 112
++D +++G+G G A + G + I A G E
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGE 58
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 36.2 bits (83), Expect = 0.022
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 45 SDAISREY---PVVDHQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVI 87
S ++R Y + + D VVVGAG AGL AA+ + + A+I
Sbjct: 23 SREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAII 69
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 36.8 bits (85), Expect = 0.023
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D +D +V+G G GL A L GFKT ++
Sbjct: 34 TDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLL 68
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 36.3 bits (83), Expect = 0.025
Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 10/156 (6%)
Query: 6 RVPSLLSKCANPLNGSFGSIIGV-KQFHFTIHGQGDSKVKSDAISREY--PVVDH-QFDA 61
R + + + A L+ ++ FT +S V S A++R Y + H + D
Sbjct: 24 RNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIRESTV-SRAMTRRYFADLDAHAETDI 82
Query: 62 VVVGAGGAGLRAAFGL--VAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWH 119
V+VGAG GL AA+ L + + ++ +A + D +
Sbjct: 83 VIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVF-LD 141
Query: 120 MYD--TVKGSDWLGDQDAIHYMTREAPKAVIELENY 153
D++ + A + + K +
Sbjct: 142 EVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVK 177
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 36.4 bits (83), Expect = 0.028
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
D ++D +V+G G + + G K + + GG ++++ +EE
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHM------DRNPYY--GGESSSITPLEELY 55
Query: 116 WHWHMYDTVKGSDWLGDQDAIH 137
+ + + + G +
Sbjct: 56 KRFQLLEGPPETMGRGRDWNVD 77
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 36.4 bits (85), Expect = 0.029
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGG 103
FD +V+G G GL A G K AV + P+ T GG
Sbjct: 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGG 51
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 36.0 bits (83), Expect = 0.034
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V VV+G G AGL +AF L G+K V+
Sbjct: 6 GKVKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVL 40
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.9 bits (82), Expect = 0.037
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ +++GAG AGL+AA L G + ++
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 35.6 bits (82), Expect = 0.046
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ V+VGAG AGL AA+ L G + V+
Sbjct: 28 KATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVL 62
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 35.6 bits (81), Expect = 0.047
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGI-NAALGNMEEDDWHWHM 120
+VGAG AGL L V T P + + + A+ E +
Sbjct: 26 GIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNE 85
Query: 121 YD 122
+
Sbjct: 86 WP 87
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 35.9 bits (83), Expect = 0.047
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 42 KVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFK 83
+V D P + ++G G A AA + A
Sbjct: 2 EVPQDKAPSHVPFL-------LIGGGTAAFAAARSIRARDPG 36
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD;
1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A*
2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 35.6 bits (83), Expect = 0.051
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 62 VVVGAGGAGLRAAFGLVAEGF 82
VV+GAG A + L G+
Sbjct: 11 VVLGAGLASVSFVAELRQAGY 31
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 35.7 bits (81), Expect = 0.052
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+++G+G +GL AA L + G ++
Sbjct: 273 LPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLL 307
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 35.6 bits (83), Expect = 0.052
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 62 VVVGAGGAGLRAAFGLVAEGF 82
V+VGAG G +AA L GF
Sbjct: 13 VIVGAGHGGAQAAIALRQNGF 33
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic
hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas
putida}
Length = 410
Score = 35.6 bits (83), Expect = 0.052
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 62 VVVGAGGAGLRAAFGLVAEGF 82
++G G G A L AEGF
Sbjct: 6 AIIGNGVGGFTTAQALRAEGF 26
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 35.2 bits (82), Expect = 0.054
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 62 VVVGAGGAGLRAAFGLVAEGF 82
++ GAG AG + A L +
Sbjct: 5 LIAGAGHAGFQVAVSLRQAKY 25
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 35.6 bits (81), Expect = 0.057
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 52 YPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+++G+G +GL AA L + G ++
Sbjct: 101 PLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLL 136
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 35.2 bits (82), Expect = 0.061
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVITKLFPTRSHTVAAQGG 103
FD VV+GAG GL A + G + AV+ AA GG
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGG 53
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 35.0 bits (80), Expect = 0.061
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHW 118
+D ++VG+G G A L K VI K R+H GG + +
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEK----RNHI----GGN---AYTEDCEGIQI 50
Query: 119 HMY 121
H Y
Sbjct: 51 HKY 53
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 35.3 bits (82), Expect = 0.067
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 62 VVVGAGGAGLRAAFGLVAEGF 82
V+VG G AG+ AFGL A G+
Sbjct: 8 VIVGTGLAGVEVAFGLRASGW 28
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 35.3 bits (81), Expect = 0.069
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+VVGAG +G+ AA L G +I
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLI 33
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 34.8 bits (79), Expect = 0.071
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 8/149 (5%)
Query: 8 PSLLSKCANPLNGSFGSIIGVKQF-HFTIHGQGDSKVKSDAISREY---PVVDHQFDAVV 63
S L + P+ I+ + + F +S V S A++ Y D ++
Sbjct: 12 ASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTV-SRAMTSRYFKDLDKFAVSDVII 70
Query: 64 VGAGGAGLRAAFGL--VAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD-WHWHM 120
VGAG +GL AA+ + K +I + +A +
Sbjct: 71 VGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELE 130
Query: 121 YDTVKGSDWLGDQDAIHYMTREAPKAVIE 149
D++ + A +++ K +
Sbjct: 131 IPYEDEGDYVVVKHAALFISTVLSKVLQL 159
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 35.0 bits (81), Expect = 0.074
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
FD +VVGAG G+ A + L +G KT ++
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 34.9 bits (81), Expect = 0.085
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D+ D ++ G G G A+ L +G + V+
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLGRQGHRVVVV 35
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 34.9 bits (81), Expect = 0.092
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D ++G G AG+ A K +I
Sbjct: 6 VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEG 39
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 34.8 bits (81), Expect = 0.094
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 36 HGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
H S Y +D +V+G+G G A G K AV+ K
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEK 56
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 34.4 bits (79), Expect = 0.11
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D VVVG G GL A+ + G + V+
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAERGHRVLVL 33
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 34.4 bits (79), Expect = 0.11
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ D +V+GAG AG AA + GFK ++
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIV 34
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 34.3 bits (78), Expect = 0.13
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNM--EE 113
FD ++VGAG AG A L + G + ++ + R H GN
Sbjct: 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR----RPHIG----------GNAYDCY 72
Query: 114 DDWHWHMYD 122
DD ++
Sbjct: 73 DDAGVLIHP 81
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 34.4 bits (80), Expect = 0.13
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254
DLI+EN G + + G +F A VL G
Sbjct: 149 DLIVENDRVVGAV---TQMGL--KFRAKAVVLTVG 178
Score = 32.8 bits (76), Expect = 0.36
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAE--GFKTAVIT 88
FD +++G G AG AA + A G +T ++T
Sbjct: 28 PFDVIIIGGGHAGTEAA--MAAARMGQQTLLLT 58
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 34.3 bits (79), Expect = 0.14
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
AVVVGAG GL A L G + V+
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVL 29
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 34.1 bits (79), Expect = 0.15
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVITKLFPTRSHTVAAQGG 103
+D VV+GAG GL A + + + AVI AA GG
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGG 49
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 33.9 bits (78), Expect = 0.16
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
VV+GAG GL +A L G + V
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVF 29
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 34.0 bits (79), Expect = 0.16
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAE--GFKTAVIT 88
P H +D +VVGAG AG AA L G +IT
Sbjct: 16 PRGSHMYDVIVVGAGHAGCEAA--LAVARGGLHCLLIT 51
Score = 32.8 bits (76), Expect = 0.36
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254
+ +G+ V + G A +LA G
Sbjct: 142 GVSANSGKFSSVT---VRSGR--AIQAKAAILACG 171
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 33.6 bits (78), Expect = 0.19
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+FD +V+GAG G AA G KTA+I K
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEK 34
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 33.5 bits (76), Expect = 0.19
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAAL 108
VV+G+G GL +A L +G+ ++ + P + A
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGAN 56
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 33.4 bits (77), Expect = 0.19
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+ ++VGAG +G AF L +G + ++T
Sbjct: 2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLT 33
Score = 33.0 bits (76), Expect = 0.25
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254
L++E GV +G VLA G
Sbjct: 93 GLLLEGNRVVGVR---TWEGP--PARGEKVVLAVG 122
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 33.6 bits (78), Expect = 0.19
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D V+G+G G AA GFKT I K
Sbjct: 4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEK 37
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 33.6 bits (78), Expect = 0.22
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATG 254
D+I++N + GV G + V+ TG
Sbjct: 148 DIIVKNNQVVGVR---TNLGV--EYKTKAVVVTTG 177
Score = 33.2 bits (77), Expect = 0.30
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAE--GFKTAVIT 88
+FD VV+G G AG+ AA L A G KTA+
Sbjct: 27 EFDVVVIGGGHAGIEAA--LAAARMGAKTAMFV 57
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 33.3 bits (77), Expect = 0.24
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 44 KSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+S + + +D VVVGAG AGL A ++G
Sbjct: 7 RSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAF 50
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 33.4 bits (76), Expect = 0.27
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ VVG G +GL A L + G ++
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLL 45
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 33.5 bits (76), Expect = 0.27
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 51 EYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ +V+G G GL A L GF ++ +
Sbjct: 100 AKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVER 138
Score = 31.5 bits (71), Expect = 1.1
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 220 DLIIENGECKGVIALCLEDGSIHRFNANNTVLATGGYGRAYFSCTSAH--TCTGDGTAMI 277
DL +E+G+ GV L +G + + VLA G R F ++
Sbjct: 245 DLHMEDGQITGV---TLSNG--EEIKSRHVVLAVGHSARDTFEMLHERGVYMEAKPFSVG 299
Query: 278 SRAGLPNEDLEFVQFHP 294
R ++ +F P
Sbjct: 300 FRIEHKQSMIDEARFGP 316
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 33.4 bits (76), Expect = 0.28
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
FD +V+G G G A + G + ++
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLL 36
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 33.0 bits (76), Expect = 0.28
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V++GAGGA EG K +
Sbjct: 151 MVLLGAGGAATAIGAQAAIEGIKEIKL 177
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 32.4 bits (73), Expect = 0.29
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 300 AGCLITEGCR--GEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPD 357
+ LI G + + + E + + VA + ++ V
Sbjct: 33 SLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGIIDVPKLFGLDAVVNQ 92
Query: 358 KD-HVYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLP 401
+ H+ + L L I G++V + P+ P
Sbjct: 93 HEVHLSISLVKPEKMPLLDDPLNPLYRTEIILGINVPKILFPIHP 137
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 33.0 bits (74), Expect = 0.29
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVI------------TKLFPTRSHTVAAQGGINAALG 109
++VGAG AGL A L G ++ T + A A G
Sbjct: 48 LIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAG 107
Query: 110 NMEEDDWHWHMYDTVK 125
M +H +
Sbjct: 108 AMRLPSFHPLTLALID 123
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 33.3 bits (77), Expect = 0.29
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
H DAVV+GAG G+ A L E T V
Sbjct: 6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVG 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 32.9 bits (75), Expect = 0.30
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
++GAG AGL A L GF I
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTI 35
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 33.2 bits (75), Expect = 0.30
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+VVGAG GLRAA L G + ++ K
Sbjct: 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEK 123
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 33.0 bits (76), Expect = 0.34
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +V+G G G+ AA K A++
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVALV 31
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 33.0 bits (75), Expect = 0.37
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ ++G G AG A L G +
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIY 52
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 32.6 bits (75), Expect = 0.37
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+ GAGGA +G K I
Sbjct: 157 MTICGAGGAATAICIQAALDGVKEISIF 184
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 32.9 bits (76), Expect = 0.40
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D V++G G AG AA GF TA + K
Sbjct: 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK 36
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 32.6 bits (75), Expect = 0.40
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90
+D ++G G GL AF +I L
Sbjct: 6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESL 39
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 32.8 bits (75), Expect = 0.40
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 32 HFTIHG-QGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAA 74
H+TI+ D + + + R + D V+VGAG AGL AA
Sbjct: 12 HYTIYPRDQDKRWEGVNMERFA----EEADVVIVGAGPAGLSAA 51
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 32.5 bits (75), Expect = 0.44
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
D ++D VV+G G G AAF EG K A++ +
Sbjct: 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVER 37
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 32.6 bits (75), Expect = 0.44
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVI 87
A ++G G G+ A ++ G ++
Sbjct: 149 AFIIGGGILGIELAQAIIDSGTPASIG 175
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 32.5 bits (75), Expect = 0.45
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D VV+G G G A+ G KTA + K
Sbjct: 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEK 33
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 32.5 bits (73), Expect = 0.46
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
D +D +V+G G + L +G K I K G AA + +
Sbjct: 9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDK---------QDHYGGEAASVTLSQLY 59
Query: 116 WHWHMYDTVKGSDWLGDQDAIHYMTREAPKAVI 148
+ K + PK ++
Sbjct: 60 EKFKQNPISKEERESKFGKDRDWNVDLIPKFLM 92
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 32.5 bits (75), Expect = 0.46
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D +V+G G G AA G K +
Sbjct: 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEA 37
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 32.5 bits (75), Expect = 0.47
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 31 FHFTIHGQGDSKVKSDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
H H + ++ + + +V + D V++GAG AG+ A G + VI
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQS-MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVI 56
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 32.1 bits (74), Expect = 0.48
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+V G+GG GF+ I
Sbjct: 122 VIVHGSGGMAKAVVAAFKNSGFEKLKIY 149
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 32.5 bits (75), Expect = 0.50
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
++D VV+GAGGAG AF L + +
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMA 33
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 32.5 bits (75), Expect = 0.52
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT-RSHTVAAQGG 103
+ +D +V+G G AGL A V G + A + + PT T GG
Sbjct: 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGG 55
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 32.1 bits (74), Expect = 0.54
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92
+ FD V+VGAG AG AA GF A++ K
Sbjct: 14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVA 50
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 32.1 bits (74), Expect = 0.56
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
Q +++G G G AA G T ++
Sbjct: 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG 36
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 32.1 bits (74), Expect = 0.58
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVI 87
A+++G G GL A L G+ +I
Sbjct: 146 AIIIGGGFIGLELAGNLAEAGYHVKLI 172
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 32.1 bits (72), Expect = 0.58
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAE-GFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
+FD VVG+G GL A + + + V+ + R H GG NA +
Sbjct: 6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLER----RPHI----GG-NAYSEAEPQTG 56
Query: 116 WHWHMY 121
H Y
Sbjct: 57 IEVHKY 62
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.2 bits (74), Expect = 0.62
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
DAVV+GAG G+ AF + G K I
Sbjct: 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGI 38
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 32.1 bits (74), Expect = 0.63
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ D V++G G G AA GFKT I K
Sbjct: 4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK 37
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 32.2 bits (72), Expect = 0.66
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDD 115
+D +++G G + L G K V+ + + GG A+L +
Sbjct: 18 GEHYDVIILGTGLKECILSGLLSHYGKKILVLDR----NPYY----GGETASLNLTNLYN 69
Query: 116 WH--WHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGM 155
+ G + + D I V L+ +
Sbjct: 70 TFKPKENIPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRV 111
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 31.8 bits (73), Expect = 0.70
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ D +VVGAG +GL A + L G VI
Sbjct: 14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVI 45
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 31.8 bits (71), Expect = 0.71
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V++GAG GL AA L G+K +
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHL 38
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 31.7 bits (73), Expect = 0.73
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+ + +VVGAG G AA G K ++ K
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK 34
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 31.4 bits (72), Expect = 0.88
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ + VV+G G G+ A L G + VI
Sbjct: 5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVI 34
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 31.6 bits (71), Expect = 0.89
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V+GAG +GL AA+ L G V
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVF 42
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 31.4 bits (72), Expect = 0.93
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFP 92
D V+GAG AGL A+ L + A+
Sbjct: 7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN 40
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 31.3 bits (69), Expect = 0.94
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 9/71 (12%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITKL---------FPTRSHTVAAQGGINAALGN 110
++VGAG G A L + + T Q +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY 62
Query: 111 MEEDDWHWHMY 121
+ + +
Sbjct: 63 ITCTPHYAKKH 73
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 31.4 bits (72), Expect = 1.0
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 57 HQFDAVVVGAGGAGLRAAF--GLVAEGFKTAVITKL 90
D ++VGAG GL A F G+ G + L
Sbjct: 4 DHTDVLIVGAGPTGLFAGFYVGMR--GLSFRFVDPL 37
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 31.2 bits (69), Expect = 1.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
++G G AGL AA L A G + + K
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDK 33
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 31.3 bits (71), Expect = 1.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
++GAG AG+ A L G +I
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVII 33
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 31.1 bits (71), Expect = 1.1
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKL 90
D ++G G G+ AAF +I +
Sbjct: 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESM 46
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 31.3 bits (72), Expect = 1.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 57 HQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ +++GAG AGL A L G V
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVF 33
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 31.3 bits (72), Expect = 1.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D V+G G G+R+ A G K A+
Sbjct: 3 AFDYDLFVIGGGSGGVRSGRLAAALGKKVAIA 34
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 31.3 bits (72), Expect = 1.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +V+G G GL +A G + AV+
Sbjct: 18 VASYDYLVIGGGSGGLASARRAAELGARAAVV 49
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 31.2 bits (71), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVI 87
VV+GAGGAG A+G +G K +
Sbjct: 367 VVVIGAGGAGKALAYGAKEKGAKVVIA 393
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 31.3 bits (70), Expect = 1.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+ A+V+G+G G AA L G T ++
Sbjct: 9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIV 40
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 30.9 bits (71), Expect = 1.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
FD + +G G GL A A G + A+I
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALI 33
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 31.0 bits (70), Expect = 1.2
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 409 GIPTNYKGQVLTHVNGQDKIIHGLYAAGEASCSSVHGANRLGANSLLDLVVFGRACAKTI 468
G+P + + + +V G+ Y G G + + D + T+
Sbjct: 331 GLPFDDQSGTIPNVGGRINGSPNEYVVGWI----KRGPTGVIGTNKKD----AQDTVDTL 382
Query: 469 AEENKPGAPIKPFAANAGESSVANLDWVRHAKGDITTAD 507
+ + + + DW+ + + T+
Sbjct: 383 IKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSA 421
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 31.2 bits (70), Expect = 1.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
AVV+G G +A L G +T ++
Sbjct: 6 VPAVVIGTGYGAAVSALRLGEAGVQTLML 34
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 31.2 bits (70), Expect = 1.3
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGG 103
D + VG G + + A L + LF + G
Sbjct: 28 AVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGN 75
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 31.0 bits (70), Expect = 1.5
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 55 VDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
V ++VGAG G A L G+ +
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTV 35
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 31.0 bits (71), Expect = 1.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +V+G G G+ +A + G KT ++
Sbjct: 11 HYDYLVIGGGSGGVASARRAASYGAKTLLV 40
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 30.6 bits (70), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+FD +++G AGL AA L ++
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDA 33
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D +V+G G +GL AA G EG ++
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLL 55
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 30.6 bits (70), Expect = 1.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+++GAG G A L + G++ V+
Sbjct: 148 VLLLGAGLIGCEFANDLSSGGYQLDVV 174
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 30.7 bits (70), Expect = 1.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 PVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
P +DA++VG GG GL A+ L T V
Sbjct: 16 PEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVA 50
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 30.5 bits (70), Expect = 1.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
+D + +G G G+ + G K A+I
Sbjct: 4 HYDYIAIGGGSGGIASINRAAMYGQKCALI 33
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 30.5 bits (70), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITK 89
+D +V+GAG G AA G K V+ K
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEK 32
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 30.6 bits (70), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
FD V+G+G G+RAA A G + A+
Sbjct: 24 SFDFDLFVIGSGSGGVRAARLAGALGKRVAIA 55
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.4 bits (69), Expect = 2.1
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 27 GVKQFHFTIHGQGDSKVKS--DAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKT 84
G+ I G KV S D + + PV + ++G GG G A L G T
Sbjct: 464 GIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNK---VAIIGCGGIGFDTAMYLSQPGEST 520
Query: 85 AVITKLF 91
+ F
Sbjct: 521 SQNIAGF 527
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 30.1 bits (68), Expect = 2.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 45 SDAISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEG 81
S + + FD VVVGAG GL AA+ L
Sbjct: 11 SSGLVPRGSHMPR-FDYVVVGAGVVGLAAAYYLKVWS 46
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 30.3 bits (68), Expect = 2.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 56 DHQF---DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
DH D +VVGAG AGL AA G + ++
Sbjct: 123 DHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLL 157
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 30.2 bits (69), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 58 QFDAVVVGAGGAG----LRAAFGLVAEGFKTAVITK 89
+D VV+GAG G +RAA G TA++
Sbjct: 3 HYDVVVLGAGPGGYVAAIRAA----QLGLSTAIVEP 34
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 29.8 bits (68), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
VVVGAGGA + L+ G K +
Sbjct: 111 VVVVGAGGAARAVIYALLQMGVKDIWVV 138
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 2.8
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 591 REDFKVRVDELDYA-----KPLEGQVPKPIEEHWRKH 622
RE+ + R+ ELD A + + K +EE ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 29.2 bits (65), Expect = 3.4
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 300 AGCLITEGCR--GEGGYLINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPD 357
A L+ G R + + + E+ + AP L+ + I++ G G
Sbjct: 51 ALELVQRGHRLIADDRVDVYQQDEQTIVGAAP--PILSHLLEIRGLGIIDVMNLFGAGAV 108
Query: 358 KDHVYL----QLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLP 401
++ + L + P+ RL +T +IF V V + +P
Sbjct: 109 REDTTISLIVHLENWTPDKTFDRLGSGEQTQLIF-DVPVPKITVPFKV 155
>2kvo_A Photosystem II reaction center PSB28 protein; membrane,
photosynthesis, thylakoid, structural genom 2, protein
structure initiative; NMR {Synechocystis SP}
Length = 120
Score = 28.4 bits (63), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 311 EGGYLINSEGE-----RFMERYA 328
E ++NS+ E RFMERY
Sbjct: 79 EATVILNSQPEWDRFMRFMERYG 101
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 29.3 bits (66), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D VV+G G +GL A + L G ++
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVIL 32
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 29.0 bits (66), Expect = 4.3
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 48 ISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFK 83
+ + + AV+ GG GL A +
Sbjct: 159 LLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALS 194
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 29.5 bits (65), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLV-AEGFKTAVI 87
D D +V+GAG GL AA L +G ++
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 40
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 29.3 bits (66), Expect = 4.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
VVGAG AG AA+ L+ G +
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 29.2 bits (66), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAV 86
A+V+GAG GL AA L G V
Sbjct: 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDV 51
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 29.2 bits (65), Expect = 5.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGL 77
D + V++G G GL AAF +
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYM 24
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 28.8 bits (64), Expect = 5.2
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 303 LITEGCR--GEGGYLINSEGERFMERYAPVAKDLASRDVVSRSM-TIEIREGRGVGPDKD 359
LI + G+ I G R R VAK + R + I + G+ K
Sbjct: 167 LINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKF----MEIRGLGIINVERFYGLQITKQ 222
Query: 360 H------VYLQLHHLPPEDLHQRLPGISETAMIFAGVDVTREPIPVLP 401
V L +RL + + GVD++ IP+ P
Sbjct: 223 RTEIQLMVNLLSLEKQTTVTFERLGTELKKQRLL-GVDLSFYEIPISP 269
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 29.3 bits (66), Expect = 5.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINA 106
DH+ D +VVGAG GL A L +G + V+ + P S A G N
Sbjct: 3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERR-PGLSPYPRA-AGQNP 51
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.9 bits (64), Expect = 5.4
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVITKLFPTRSHTVAAQGGINAALGNMEEDDWHWHMY 121
VV+GAG GL A + + + + A G W ++
Sbjct: 4 VVIGAGVIGLSTALCIHERYHSVLQPLDIKVY-ADRFTPLTTTDVAAGL-----WQPYLS 57
Query: 122 DTVKGSDWLGDQDAIHYMTREAP 144
D + Q Y+
Sbjct: 58 DPNNPQEADWSQQTFDYLLSHVH 80
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 29.1 bits (66), Expect = 5.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 43 VKSDAISREYPVVDHQFDAVVVGAGGAGL 71
V+S +S V +D ++ G G GL
Sbjct: 9 VQSSLLSDPSKVAGKTYDYIIAGGGLTGL 37
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A*
2yr5_A* 3ayl_A*
Length = 721
Score = 29.1 bits (63), Expect = 5.5
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 56 DHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLFPT 93
+ +VG G G+ A + L + +
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQ 91
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 28.8 bits (65), Expect = 5.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
D ++ GAG GL A L G +
Sbjct: 5 IDILIAGAGIGGLSCALALHQAGIGKVTL 33
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 28.9 bits (64), Expect = 6.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 60 DAVVVGAGGAGLRAAFGLVAEGFKTAVI 87
VV+G G +GL A++ L V+
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVV 31
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 28.7 bits (65), Expect = 6.7
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 47 AISREYPVVDHQFDAVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
A+ E + +V+GAGG F L++ + +
Sbjct: 130 ALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMA 171
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 28.8 bits (65), Expect = 6.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 59 FDAVVVGAGGAGLRAAFGLVAEGFKTAVITKLF 91
+D ++VG+G AG AA +G +T ++ + F
Sbjct: 213 YDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF 245
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 28.3 bits (64), Expect = 7.5
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
VV+G+GGA L K +
Sbjct: 125 CVVLGSGGAARAVLQYLKDNFAKDIYVV 152
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 28.6 bits (64), Expect = 7.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 62 VVVGAGGAGLRAAFGLVAEGFKTAVIT 88
V++GAG G+ AA+ + +T
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVT 34
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 28.4 bits (64), Expect = 7.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 58 QFDAVVVGAGGAGLRAAFGLVAEGFKTAV 86
A V G G AGL AA L G+ +
Sbjct: 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRL 39
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 28.3 bits (64), Expect = 7.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFKTAVIT 88
+++GAGGA A L T +
Sbjct: 120 ILILGAGGASKGIANELYKIVRPTLTVA 147
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 27.9 bits (63), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 61 AVVVGAGGAGLRAAFGLVAEGFK 83
+V+GAGGA + LV EG K
Sbjct: 132 ILVLGAGGASRAVIYALVKEGAK 154
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 28.3 bits (64), Expect = 9.7
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 24/83 (28%)
Query: 323 FMERYAPVAKDLASRDVVSRSMTIEIREGRGVGPDKDHV----YLQLHHLPPEDLHQRLP 378
+++ + ++L+ + + IE+ R + + Y Q+ + P+DL +RL
Sbjct: 4 LVQKLKILRQELSQQQPQAGHCRIEVS--R------EEIFEESYRQVMKMRPKDLWKRL- 54
Query: 379 GISETAMIF---AGVD---VTRE 395
+ F G+D V RE
Sbjct: 55 -----MIKFRGEEGLDYGGVARE 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,542,714
Number of extensions: 674306
Number of successful extensions: 2097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1973
Number of HSP's successfully gapped: 206
Length of query: 661
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 561
Effective length of database: 3,909,693
Effective search space: 2193337773
Effective search space used: 2193337773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)