BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15092
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QCQ|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
pdb|2QCQ|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
Length = 110
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS A+ +V G
Sbjct: 10 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 69
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCCVPE ++ L +L+ + VL+ + +M VESC
Sbjct: 70 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCA 108
>pdb|3QB4|A Chain A, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
pdb|3QB4|C Chain C, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
Length = 117
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
RK L V F D+GWD WII P +++++C G C FP+ L P++HA +Q+ M + T
Sbjct: 18 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLASHLEPTNHAVIQTLMNSMDPEST 77
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+P+ +L+ +S V + ++DM VESCG
Sbjct: 78 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 115
>pdb|1WAQ|A Chain A, Crystal Structure Of Human Growth And Differentiation
Factor 5 (Gdf-5)
pdb|3EVS|B Chain B, Crystal Structure Of The Gdf-5:bmp Receptor Ib Complex
Length = 117
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
RK L V F D+GWD WII P +++++C G C FP+ L P++HA +Q+ M + T
Sbjct: 18 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 77
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+P+ +L+ +S V + ++DM VESCG
Sbjct: 78 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 115
>pdb|2BHK|A Chain A, Crystal Structure Of Human Growth And Differentiation
Factor 5 (Gdf5)
Length = 120
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
RK L V F D+GWD WII P +++++C G C FP+ L P++HA +Q+ M + T
Sbjct: 21 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 80
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+P+ +L+ +S V + ++DM VESCG
Sbjct: 81 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 118
>pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2)
pdb|1REW|A Chain A, Structural Refinement Of The Complex Of Bone Morphogenetic
Protein 2 And Its Type Ia Receptor
pdb|1REW|B Chain B, Structural Refinement Of The Complex Of Bone Morphogenetic
Protein 2 And Its Type Ia Receptor
pdb|2GOO|A Chain A, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2GOO|D Chain D, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2H62|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
pdb|2H62|B Chain B, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
KR PL V F D+GW+ WI+ P + ++YC G+C FP+ L ++HA +Q+ + V S
Sbjct: 15 KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+ + +LY + VL+ +QDM VE CG
Sbjct: 75 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 112
>pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|1ES7|C Chain C, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|2QJ9|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-Ia Variant B1
pdb|2QJ9|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-Ia Variant B1
pdb|2QJA|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant B12
pdb|2QJA|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant B12
pdb|2QJB|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant Ia/ib
pdb|2QJB|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant Ia/ib
Length = 116
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
KR PL V F D+GW+ WI+ P + ++YC G+C FP+ L ++HA +Q+ + V S
Sbjct: 17 KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 76
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+ + +LY + VL+ +QDM VE CG
Sbjct: 77 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 114
>pdb|1M4U|L Chain L, Crystal Structure Of Bone Morphogenetic Protein-7 (bmp-7)
In Complex With The Secreted Antagonist Noggin
pdb|1LX5|A Chain A, Crystal Structure Of The Bmp7ACTRII EXTRACELLULAR DOMAIN
COMPLEX
pdb|1LXI|A Chain A, Refinement Of Bmp7 Crystal Structure
pdb|1BMP|A Chain A, Bone Morphogenetic Protein-7
Length = 139
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
K+ L V F DLGW WII P+ + +YYC G+C+FP+ + ++HA +Q+ ++ ++
Sbjct: 39 KKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPET 98
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCC P L + VLY + +L+ +++M V +CG
Sbjct: 99 VPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG 137
>pdb|2H64|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
KR PL V F D+GW+ WI+ P + ++YC G+C FP+ L ++HA +Q+ + V S
Sbjct: 15 KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+ + +LY + V + +QDM VE CG
Sbjct: 75 PKACCVPTELSAISMLYLDENEKVVKKDYQDMVVEGCG 112
>pdb|1REU|A Chain A, Structure Of The Bone Morphogenetic Protein 2 Mutant L51p
Length = 103
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
KR PL V F D+GW+ WI+ P + ++YC G+C FP L ++HA +Q+ + V S
Sbjct: 4 KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPPADHLNSTNHAIVQTLVNSVNSKI 63
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+ + +LY + VL+ +QDM VE CG
Sbjct: 64 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 101
>pdb|3BK3|A Chain A, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
pdb|3BK3|B Chain B, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
Length = 114
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
KR PL V F D+GW+ WI+ P + + YC G+C FP+ L ++HA +Q+ + V S
Sbjct: 15 KRHPLYVDFSDVGWNDWIVAPPGYHAMYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+ + +L + VL+ +QDM VE CG
Sbjct: 75 PKACCVPTELSAISMLMLDENEKVVLKNYQDMVVEGCG 112
>pdb|2QCW|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6)
pdb|2QCW|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6)
Length = 132
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
++ L V F DLGW WII P+ + + YC G+CSFP+ + ++HA +Q+ ++L++
Sbjct: 32 RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 91
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCC P L + VLY + +L+ +++M V +CG
Sbjct: 92 VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 130
>pdb|2R52|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
(Bmp-6)
pdb|2R52|B Chain B, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
(Bmp-6)
Length = 143
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
++ L V F DLGW WII P+ + + YC G+CSFP+ + ++HA +Q+ ++L++
Sbjct: 43 RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 102
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCC P L + VLY + +L+ +++M V +CG
Sbjct: 103 VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 141
>pdb|2R53|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
Variant B2 (b2-bmp-6)
pdb|2R53|B Chain B, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
Variant B2 (b2-bmp-6)
Length = 116
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
++ L V F DLGW WII P+ + + YC G+CSFP+ + ++HA +Q+ ++L++
Sbjct: 16 RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 75
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCC P L + VLY + +L+ +++M V +CG
Sbjct: 76 VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 114
>pdb|1ZKZ|A Chain A, Crystal Structure Of Bmp9
pdb|4FAO|A Chain A, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|B Chain B, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|G Chain G, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|H Chain H, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|M Chain M, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|N Chain N, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|S Chain S, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|T Chain T, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|AA Chain a, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|BB Chain b, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|GG Chain g, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|HH Chain h, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
Length = 110
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
++ L V F D+GWD WII P+ +++Y C G C FP+ + P+ HA +Q+ ++L +
Sbjct: 9 QKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTK 68
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRY-FQDMRVESCG 225
CCVP L+P+ VLY++ + L+Y ++ M V CG
Sbjct: 69 VGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECG 108
>pdb|3HH2|A Chain A, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3HH2|B Chain B, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3SEK|B Chain B, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 109
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPG 189
R PL V F GWD WII P+ +++ YCSG+C F + P +H Q+ G+ G
Sbjct: 17 RYPLTVDFEAFGWD-WIIAPKRYKANYCSGECEFVFLQKY-PHTHLVHQAN---PRGSAG 71
Query: 190 PCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
PCC P ++P+ +LY + M V+ CG
Sbjct: 72 PCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCG 107
>pdb|1NYS|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
P41
pdb|1NYS|D Chain D, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
P41
pdb|1NYU|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
pdb|1NYU|D Chain D, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
pdb|1S4Y|B Chain B, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|1S4Y|D Chain D, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|2B0U|A Chain A, The Structure Of The Follistatin:activin Complex
pdb|2B0U|B Chain B, The Structure Of The Follistatin:activin Complex
pdb|2ARP|A Chain A, Activin A In Complex With Fs12 Fragment Of Follistatin
pdb|2ARV|A Chain A, Structure Of Human Activin A
pdb|2ARV|B Chain B, Structure Of Human Activin A
pdb|2P6A|A Chain A, The Structure Of The Activin:follistatin 315 Complex
pdb|2P6A|B Chain B, The Structure Of The Activin:follistatin 315 Complex
pdb|3B4V|A Chain A, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|B Chain B, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|E Chain E, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|F Chain F, X-Ray Structure Of Activin In Complex With Fstl3
Length = 116
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 119 CSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQ 178
C GK I +K V F D+GW+ WII P + + YC G+C P +A +S + L
Sbjct: 4 CDGK--VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGEC----PSHIAGTSGSSLS 57
Query: 179 SAMYLVS----------GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
+++ CCVP L P+ +LY + + + Q+M VE CG
Sbjct: 58 FHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG 114
>pdb|1KTZ|A Chain A, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor
Extracellular Domain In Complex With Tgf-Beta3
pdb|1TGJ|A Chain A, Human Transforming Growth Factor-beta 3, Crystallized From
Dioxane
pdb|1TGK|A Chain A, Human Transforming Growth Factor Beta 3, Crystallized From
Peg 4000
pdb|2PJY|A Chain A, Structural Basis For Cooperative Assembly Of The Tgf-Beta
Signaling Complex
pdb|3EO1|C Chain C, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|F Chain F, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|I Chain I, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|L Chain L, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 112
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 131 KPLVVKF-GDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
+PL + F DLGW +W+ EP+ + + +CSG C + A ++H+ + ++ +
Sbjct: 18 RPLYIDFRQDLGW-KWVHEPKGYYANFCSGPCPY---LRSADTTHSTVLGLYNTLNPEAS 73
Query: 188 PGPCCVPETLTPLRVLY--QESPYITVLRYFQDMRVESC 224
PCCVP+ L PL +LY +P + L +M V+SC
Sbjct: 74 ASPCCVPQDLEPLTILYYVGRTPKVEQL---SNMVVKSC 109
>pdb|1TFG|A Chain A, An Unusual Feature Revealed By The Crystal Structure At
2.2 Angstroms Resolution Of Human Transforming Growth
Factor-Beta2
pdb|2TGI|A Chain A, Crystal Structure Of Transforming Growth Factor-Beta2: An
Unusual Fold For The Superfamily
Length = 112
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 131 KPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
+PL + F DLGW +WI EP+ + + +C+G C + + + H+ + S ++ +
Sbjct: 18 RPLYIDFKRDLGW-KWIHEPKGYNANFCAGACPYLWS---SDTQHSRVLSLYNTINPEAS 73
Query: 188 PGPCCVPETLTPLRVLY--QESPYITVLRYFQDMRVESC 224
PCCV + L PL +LY ++P I L +M V+SC
Sbjct: 74 ASPCCVSQDLEPLTILYYIGKTPKIEQL---SNMIVKSC 109
>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|B Chain B, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|C Chain C, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|D Chain D, Crystal Structure Of Pro-tgf Beta 1
Length = 363
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 139 DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLT 198
DLGW +WI EP+ + + +C G C + I S + + PCCVP+ L
Sbjct: 278 DLGW-KWIHEPKGYHANFCLGPCPY-IWSLDTQYSKVLALYNQHNPGASAAPCCVPQALE 335
Query: 199 PLRVLY 204
PL ++Y
Sbjct: 336 PLPIVY 341
>pdb|1KLD|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLD|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLC|A Chain A, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLC|B Chain B, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLA|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|1KLA|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|3KFD|A Chain A, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|B Chain B, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|C Chain C, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|D Chain D, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
Length = 112
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 139 DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLT 198
DLGW +WI EP+ + + +C G C + I S + + PCCVP+ L
Sbjct: 27 DLGW-KWIHEPKGYHANFCLGPCPY-IWSLDTQYSKVLALYNQHNPGASAAPCCVPQALE 84
Query: 199 PLRVLY 204
PL ++Y
Sbjct: 85 PLPIVY 90
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 48 EEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEEN-DVSRQSCERKPLVVKFGDLGWDQ 106
+E+N+P +E + VE P V K + V IE D + + P +VK DLG +
Sbjct: 29 KEKNLP-LELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVK--DLGLEH 85
Query: 107 WIIEPQSFQSYYCSGKCSFPIPK 129
++ + QSY + P+PK
Sbjct: 86 LLVNNATGQSYVLVNRTLHPMPK 108
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKAL 169
+ + + L FG + D+W + PQ+ +YY G P A+
Sbjct: 460 YAVNHDRELAKLFGPVDRDEWFMTPQTVNAYYNPGMNEIVFPAAI 504
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 99 FGDLGWDQWIIEPQSFQSYYCSG--KCSFPIPKRKP 132
FG + D+W + PQ+ +YY G + FP +P
Sbjct: 472 FGPVDRDEWFMTPQTVNAYYNPGMNEIVFPAAILQP 507
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 12 NKEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEE 49
N+E YE +I D + +R I V S E NT +K+E
Sbjct: 348 NEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKE 385
>pdb|1Z5X|E Chain E, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 310
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Query: 14 EKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHV 73
+ EYEH S D K P+ E+ EE HI E I TV+ I + K+ +
Sbjct: 89 QNEYEHPSPEDIKRIVNAAPEEENVAEERFRHITE------ITILTVQLIVEFSKR---L 139
Query: 74 PPVKKYIEENDVS-RQSCERKPLVVKFG---DLGWDQWII---EPQSFQSYYCSG 121
P K I E+ ++ ++C + ++ + D D + +P + +SY +G
Sbjct: 140 PGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAG 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,416,241
Number of Sequences: 62578
Number of extensions: 318142
Number of successful extensions: 878
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 71
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)