Query psy15092
Match_columns 225
No_of_seqs 197 out of 904
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:22:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00204 TGFB Transforming g 100.0 9.1E-38 2E-42 240.6 8.1 98 128-225 1-100 (102)
2 KOG3900|consensus 100.0 1.9E-36 4.1E-41 282.1 9.9 110 115-225 298-411 (413)
3 PF00019 TGF_beta: Transformin 100.0 1.1E-33 2.4E-38 218.0 4.7 99 127-225 3-103 (105)
4 PHA02913 TGF-beta-like protein 100.0 8.9E-31 1.9E-35 217.1 7.6 96 125-225 74-171 (172)
5 smart00204 TGFB Transforming g 99.4 4.6E-14 1E-18 108.7 2.0 44 90-133 1-44 (102)
6 KOG3900|consensus 99.4 1.3E-13 2.9E-18 128.7 3.5 52 84-136 307-358 (413)
7 PHA02913 TGF-beta-like protein 99.4 1.6E-13 3.4E-18 114.3 2.8 41 86-127 73-114 (172)
8 PF00019 TGF_beta: Transformin 99.2 3.2E-12 6.8E-17 98.4 2.0 47 88-134 2-48 (105)
9 smart00041 CT C-terminal cysti 90.6 0.5 1.1E-05 34.6 4.4 59 152-225 18-76 (82)
10 PF10330 Stb3: Putative Sin3 b 52.8 7.9 0.00017 29.4 1.3 19 96-114 61-79 (92)
11 PF03045 DAN: DAN domain; Int 45.6 16 0.00036 28.7 2.1 66 150-224 47-114 (121)
12 smart00067 GHA Glycoprotein ho 37.9 38 0.00083 25.2 2.9 49 151-203 17-66 (87)
13 PF02512 UK: Virulence determi 37.8 30 0.00064 25.8 2.3 27 175-201 50-77 (96)
14 KOG4457|consensus 20.4 90 0.0019 26.6 2.5 28 195-222 145-172 (202)
No 1
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=100.00 E-value=9.1e-38 Score=240.59 Aligned_cols=98 Identities=45% Similarity=1.019 Sum_probs=94.7
Q ss_pred CCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEEEEE
Q psy15092 128 PKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRVLYQ 205 (225)
Q Consensus 128 c~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~ily~ 205 (225)
|+|++|+|+|+||||++|||+|++|+|+||.|.|++++...++++|||++|++++..+ .++.|||+|++|++|+|||+
T Consensus 1 Ccr~~l~VdF~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~~~~~~Ha~i~~~~~~~~~~~~~~pCC~P~~~~~l~~ly~ 80 (102)
T smart00204 1 CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNATNHAIVQTLVHLLGPNPVPKPCCVPTKLSPLSMLYY 80 (102)
T ss_pred CceeEEEEEHhhcCCcceEEcCCceeeeEEeeeCCCCcccccCCcchhhhhhhHHhcCCCCCCCCCccCceEecEEEEEE
Confidence 8999999999999999999999999999999999999988889999999999999887 68999999999999999999
Q ss_pred eCCCeEEEeEeCCeEEccCC
Q psy15092 206 ESPYITVLRYFQDMRVESCG 225 (225)
Q Consensus 206 ~~~g~i~~~~~~nMiV~~Cg 225 (225)
+++|+++++++|||+|++||
T Consensus 81 ~~~~~i~~~~~~~Mvv~~Cg 100 (102)
T smart00204 81 DDDGNVVLRNYPNMVVEECG 100 (102)
T ss_pred eCCCcEEEEEcCCCEEeeee
Confidence 99999999999999999998
No 2
>KOG3900|consensus
Probab=100.00 E-value=1.9e-36 Score=282.14 Aligned_cols=110 Identities=43% Similarity=0.872 Sum_probs=101.0
Q ss_pred cccccCCCCC--CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCC
Q psy15092 115 QSYYCSGKCS--FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGP 190 (225)
Q Consensus 115 ~A~~C~G~C~--~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~p 190 (225)
+..++...|. ...|||++|||+|++|||+||||||+||+||||+|.|+++++. +++||||++|++++..+ .+++|
T Consensus 298 ~~~~~~~~~~~~~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G~C~~p~~~-~~~tnHa~vq~l~~~~~p~~~p~p 376 (413)
T KOG3900|consen 298 RRARRGRNCEGARNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSGTCPFPLAD-HAATNHAIVQTLVHAVNPEPVPKP 376 (413)
T ss_pred ccccccccCCCCCCceeccceEeehhhcCCcceEeCCCcccCceecCcCCCchhh-cCCcchHHHHHHHHhhCCCCCCCC
Confidence 3344444443 3469999999999999998899999999999999999999999 99999999999999999 78999
Q ss_pred ceeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092 191 CCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225 (225)
Q Consensus 191 CCvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg 225 (225)
||||++|++|+|||+|++++|++++|+||+|++||
T Consensus 377 CCvPtklsplsvLy~d~~~~vv~k~y~nMvV~~Cg 411 (413)
T KOG3900|consen 377 CCVPTKLSPLSVLYFDDNGNVVLKTYPNMVVESCG 411 (413)
T ss_pred ccccCccCceEEEEEeCCCcEEEEEecCcEEEecc
Confidence 99999999999999999999999999999999998
No 3
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....
Probab=99.98 E-value=1.1e-33 Score=218.02 Aligned_cols=99 Identities=43% Similarity=0.896 Sum_probs=93.3
Q ss_pred CCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEEEE
Q psy15092 127 IPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRVLY 204 (225)
Q Consensus 127 lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~ily 204 (225)
.|++++++|+|+||||++|||+|++|+|+||.|.|+.++...++.++|++++++++... .+++|||+|++|++|+|||
T Consensus 3 ~Cc~~~~~v~F~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~~~~~~ha~~~~~~~~~~~~~~~~pCC~P~~~~~l~il~ 82 (105)
T PF00019_consen 3 RCCRRSLYVNFKDLGWDDWIIAPEGYNANYCSGSCPFPLSNHNNHSNHAILQSLMHSLNPRSVPQPCCVPTKYSPLSILY 82 (105)
T ss_dssp BSEEEEEEEECTCTTSTTTEEESSEEEEEEEESBSCSSSSCGCHHHHHHHHHHHHHHHSTTTSTS-EEEEEEEEEEEEEE
T ss_pred cceeEEEEEEhhhcCCceeEeccCccccccccceecccccccccccccccccccccccccccccCCcEeeeeeceEEEEE
Confidence 58999999999999997899999999999999999999988888889999999998877 7899999999999999999
Q ss_pred EeCCCeEEEeEeCCeEEccCC
Q psy15092 205 QESPYITVLRYFQDMRVESCG 225 (225)
Q Consensus 205 ~~~~g~i~~~~~~nMiV~~Cg 225 (225)
+++++.|++++|+||+|++||
T Consensus 83 ~~~~~~i~~~~~~~m~v~~Cg 103 (105)
T PF00019_consen 83 LDEDGNIVLKTLPNMIVKECG 103 (105)
T ss_dssp EETTSEEEEEEEEEEEEEEEE
T ss_pred EECCCcEEEEEeCCEEecccc
Confidence 999999999999999999997
No 4
>PHA02913 TGF-beta-like protein; Provisional
Probab=99.97 E-value=8.9e-31 Score=217.07 Aligned_cols=96 Identities=20% Similarity=0.419 Sum_probs=79.7
Q ss_pred CCCCCCCCeeeee-cCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-CCCCCceeccccCceEE
Q psy15092 125 FPIPKRKPLVVKF-GDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-GTPGPCCVPETLTPLRV 202 (225)
Q Consensus 125 ~~lc~R~~l~V~F-~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-~~~~pCCvP~~~~~l~i 202 (225)
...|||++|+|+| +|||| +|||||+||+|+||.|.|+++. .+.++|++.+.+.+... ..++|||+|++|++|+|
T Consensus 74 ~~~CcR~~lyVDF~~dIGW-dWIIAPkgY~AyyC~G~Cp~p~---~~~~~~~~~~ll~~~~p~~~~~pCCvPtklspLSm 149 (172)
T PHA02913 74 DAICCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICSISN---HKKINLMYGTAFKHHMPDNTIPFCCAPIKMKNFII 149 (172)
T ss_pred CCCceeEEEEechhhccCc-ceEecCCCeeeeEEeeeCCCCc---chhhHHHHHHHHHhcCCCCCCCCCccccccccEEE
Confidence 4679999999999 99999 8999999999999999999863 22344444333333323 67889999999999999
Q ss_pred EEEeCCCeEEEeEeCCeEEccCC
Q psy15092 203 LYQESPYITVLRYFQDMRVESCG 225 (225)
Q Consensus 203 ly~~~~g~i~~~~~~nMiV~~Cg 225 (225)
||+++ +++++++++||+|++||
T Consensus 150 LY~d~-~nV~~k~~~nMvVeeCG 171 (172)
T PHA02913 150 AYKEG-RKIKTDNIKNFKILECA 171 (172)
T ss_pred EEECC-CEEEEeECCCcEEeccc
Confidence 99975 68999999999999998
No 5
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=99.42 E-value=4.6e-14 Score=108.68 Aligned_cols=44 Identities=48% Similarity=1.256 Sum_probs=39.9
Q ss_pred eeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCe
Q psy15092 90 CERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPL 133 (225)
Q Consensus 90 C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l 133 (225)
|+|++|+|+|+|+||++|||+|++|+|+||.|.|+.++-...+.
T Consensus 1 Ccr~~l~VdF~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~~~~ 44 (102)
T smart00204 1 CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNA 44 (102)
T ss_pred CceeEEEEEHhhcCCcceEEcCCceeeeEEeeeCCCCcccccCC
Confidence 89999999999999999999999999999999999877655443
No 6
>KOG3900|consensus
Probab=99.40 E-value=1.3e-13 Score=128.73 Aligned_cols=52 Identities=44% Similarity=1.094 Sum_probs=44.9
Q ss_pred ccccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCeeee
Q psy15092 84 DVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVK 136 (225)
Q Consensus 84 ~~~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l~V~ 136 (225)
....+.|||++|||+|.++||++|||+|++|.||||.|.|++++.. .+...+
T Consensus 307 ~~~~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G~C~~p~~~-~~~tnH 358 (413)
T KOG3900|consen 307 EGARNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSGTCPFPLAD-HAATNH 358 (413)
T ss_pred CCCCCceeccceEeehhhcCCcceEeCCCcccCceecCcCCCchhh-cCCcch
Confidence 3355679999999999999999999999999999999999999876 444443
No 7
>PHA02913 TGF-beta-like protein; Provisional
Probab=99.38 E-value=1.6e-13 Score=114.31 Aligned_cols=41 Identities=27% Similarity=0.704 Sum_probs=37.5
Q ss_pred ccCCeeeeCeEEEe-cccCCccceeCCCCccccccCCCCCCCC
Q psy15092 86 SRQSCERKPLVVKF-GDLGWDQWIIEPQSFQSYYCSGKCSFPI 127 (225)
Q Consensus 86 ~~~~C~r~~l~V~F-~dlGw~~WIi~P~~~~A~~C~G~C~~~l 127 (225)
....|+|++|+|+| +|+|| +|||||+||+|+||.|.|+++.
T Consensus 73 ~~~~CcR~~lyVDF~~dIGW-dWIIAPkgY~AyyC~G~Cp~p~ 114 (172)
T PHA02913 73 IDAICCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICSISN 114 (172)
T ss_pred CCCCceeEEEEechhhccCc-ceEecCCCeeeeEEeeeCCCCc
Confidence 45679999999999 99999 6999999999999999998763
No 8
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....
Probab=99.23 E-value=3.2e-12 Score=98.37 Aligned_cols=47 Identities=45% Similarity=1.129 Sum_probs=41.6
Q ss_pred CCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCee
Q psy15092 88 QSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLV 134 (225)
Q Consensus 88 ~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l~ 134 (225)
..|+|++|+|+|+|+||++||++|++|+|++|.|.|+.+.-....+.
T Consensus 2 ~~Cc~~~~~v~F~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~~~~~ 48 (105)
T PF00019_consen 2 KRCCRRSLYVNFKDLGWDDWIIAPEGYNANYCSGSCPFPLSNHNNHS 48 (105)
T ss_dssp SBSEEEEEEEECTCTTSTTTEEESSEEEEEEEESBSCSSSSCGCHHH
T ss_pred CcceeEEEEEEhhhcCCceeEeccCccccccccceeccccccccccc
Confidence 56999999999999999999999999999999999998766544443
No 9
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=90.61 E-value=0.5 Score=34.61 Aligned_cols=59 Identities=25% Similarity=0.503 Sum_probs=39.7
Q ss_pred cccccccccCCCCCCCCCCCCchHHHHHHHHhcCCCCCCceeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092 152 FQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225 (225)
Q Consensus 152 y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~~~~~pCCvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg 225 (225)
+...+|.|.|..... ...+. . ...-.||.|.++....|-+.=.||..+.+.+ |+|++|+
T Consensus 18 v~~~~C~G~C~s~~~---~~~~~---------~-~~~c~CC~p~~~~~~~v~l~C~dg~~~~~~v--~~i~~C~ 76 (82)
T smart00041 18 VKNAFCEGKCGSASS---YSIQD---------V-QHSCSCCQPHKTKTRQVRLRCPDGSTVKKTV--MHIEECG 76 (82)
T ss_pred EEcCcEEeECCCeeE---cCccc---------c-ccCCCccCCceeEEEEEEEECCCCCEEEEEE--EEEEecc
Confidence 788999999975321 11110 0 1126899999999999988778888655555 5666664
No 10
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=52.81 E-value=7.9 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=15.1
Q ss_pred EEEecccCCccceeCCCCc
Q psy15092 96 VVKFGDLGWDQWIIEPQSF 114 (225)
Q Consensus 96 ~V~F~dlGw~~WIi~P~~~ 114 (225)
-|.|..+||+.|-....+-
T Consensus 61 ~VvFEKvGWGrW~ar~~~~ 79 (92)
T PF10330_consen 61 DVVFEKVGWGRWDARRVGD 79 (92)
T ss_pred CEEEEEeccceeeeeecCC
Confidence 3699999999998665543
No 11
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=45.59 E-value=16 Score=28.72 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=38.0
Q ss_pred CccccccccccCCCCCCCCCCCCchHHHHHHHHhcCCCCCCceeccccCceEEEEEeCCCeEE--EeEeCCeEEccC
Q psy15092 150 QSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITV--LRYFQDMRVESC 224 (225)
Q Consensus 150 ~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~~~~~pCCvP~~~~~l~ily~~~~g~i~--~~~~~nMiV~~C 224 (225)
....-++|.|.|.+..-....+..... . ....-.||.|.+...+.|...=.++.-. .+.+ ++|++|
T Consensus 47 ~~I~N~~C~GqC~S~~iP~~~~~~~~~------~-~~~~C~~C~P~~~~~~~V~L~C~~~~~~~~~k~v--~~v~~C 114 (121)
T PF03045_consen 47 VTIQNNFCFGQCSSFYIPSSVPSDPGS------Q-PFQSCSCCQPSRFRWVTVTLRCPGGSPPFRVKRV--QIVEEC 114 (121)
T ss_pred EEEEeeeeEEEcceEEeeCCccccccc------c-cCcccCccCCCeeEEEEEEEECcCCCCCcceEEE--EEeeec
Confidence 346788999999975311111000000 0 0234567999999999887755444433 3333 677777
No 12
>smart00067 GHA Glycoprotein hormone alpha chain homologues. Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.
Probab=37.89 E-value=38 Score=25.17 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=32.3
Q ss_pred ccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-CCCCCceeccccCceEEE
Q psy15092 151 SFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-GTPGPCCVPETLTPLRVL 203 (225)
Q Consensus 151 ~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-~~~~pCCvP~~~~~l~il 203 (225)
+-..++|.|=|-.- -.+|-.-..+.|+.-.+ ..-.-|||.....-+.++
T Consensus 17 ~~PiyQC~GCCFSr----AYPTPlrskktM~vpKNITSEAtCCVAk~~~~v~v~ 66 (87)
T smart00067 17 GAPIYQCMGCCFSR----AYPTPLRSKKTMLVPKNITSEATCCVAKEFYRVTVM 66 (87)
T ss_pred CCceeEecceeccc----ccCCchhhhhccccCccccCceeEEEecccEEEEEe
Confidence 44788999988652 23454444455555555 567889999887766665
No 13
>PF02512 UK: Virulence determinant
Probab=37.84 E-value=30 Score=25.79 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=18.0
Q ss_pred HHHHHHHHhcC-CCCCCceeccccCceE
Q psy15092 175 AYLQSAMYLVS-GTPGPCCVPETLTPLR 201 (225)
Q Consensus 175 a~iqsll~~~~-~~~~pCCvP~~~~~l~ 201 (225)
-.|-.+...++ ...-|||||.+|.+..
T Consensus 50 ewiaeywkgi~rgndvpcccprkmtsad 77 (96)
T PF02512_consen 50 EWIAEYWKGIKRGNDVPCCCPRKMTSAD 77 (96)
T ss_pred HHHHHHHHhcccCCCCCccCCccccccc
Confidence 34444555555 5677999999987653
No 14
>KOG4457|consensus
Probab=20.45 E-value=90 Score=26.57 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.5
Q ss_pred cccCceEEEEEeCCCeEEEeEeCCeEEc
Q psy15092 195 ETLTPLRVLYQESPYITVLRYFQDMRVE 222 (225)
Q Consensus 195 ~~~~~l~ily~~~~g~i~~~~~~nMiV~ 222 (225)
+=|+.-+++|++++|-|...+++.|...
T Consensus 145 swyDgYSv~yl~~~GlI~kh~ldK~mpd 172 (202)
T KOG4457|consen 145 SWYDGYSVLYLDGNGLIYKHTLDKMMPD 172 (202)
T ss_pred ccccceeEEEECCCceEEeeehhhhCcc
Confidence 4588999999999999888888888654
Done!