RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15092
(225 letters)
>gnl|CDD|214556 smart00204, TGFB, Transforming growth factor-beta (TGF-beta)
family. Family members are active as disulphide-linked
homo- or heterodimers. TGFB is a multifunctional peptide
that controls proliferation, differentiation, and other
functions in many cell types.
Length = 102
Score = 116 bits (294), Expect = 7e-34
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
+R+ L V F DLGWD WII P+ + +YYC G+C FP+ +L ++HA +Q+ ++L+
Sbjct: 2 RRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNATNHAIVQTLVHLLGPNP 61
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCCVP L+PL +LY + VLR + +M VE CG
Sbjct: 62 VPKPCCVPTKLSPLSMLYYDDDGNVVLRNYPNMVVEECG 100
>gnl|CDD|215660 pfam00019, TGF_beta, Transforming growth factor beta like domain.
Length = 105
Score = 105 bits (265), Expect = 1e-29
Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
+ + L V F DLGW WII P+ + + YC+G+C FP+ L ++HA LQ+ + L++
Sbjct: 5 RLRELYVDFRDLGWGDWIIAPEGYIANYCAGECPFPLADDLNLTNHAILQTLVRLLNPRA 64
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCCVP L+PL +LY + VLR + +M V+ CG
Sbjct: 65 VPKPCCVPTKLSPLSMLYLDDSSNVVLRLYPNMVVKECG 103
>gnl|CDD|177497 PHA02913, PHA02913, TGF-beta-like protein; Provisional.
Length = 172
Score = 38.5 bits (89), Expect = 8e-04
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 135 VKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMY-------LVSG 186
+ F D+G +WI++P+ + C G CS S+H + MY +
Sbjct: 84 IDFKADMGM-KWILKPEGTHANLCIGICSI--------SNHK-KINLMYGTAFKHHMPDN 133
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
T CC P + + Y+E I ++ ++ C
Sbjct: 134 TIPFCCAPIKMKNFIIAYKEGRKIKT-DNIKNFKILECA 171
Score = 30.8 bits (69), Expect = 0.37
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 90 CERKPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCS 124
C + + F D+G +WI++P+ + C G CS
Sbjct: 77 CCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICS 111
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 33.2 bits (75), Expect = 0.12
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 4 NFETPVDGNKEKEYEHN-SIYDEKSAKRNIPDVESKTEENTTHIKE--EENVPRIEKSTV 60
N E V+ N E+ E N YDE++ + +VE EEN I+E EENV E++
Sbjct: 1002 NIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENV---EENIE 1058
Query: 61 ENIPDVQKKKEHVPPVKKYIEEN 83
ENI + +E+V +++ IEEN
Sbjct: 1059 ENIEEYD--EENVEEIEENIEEN 1079
Score = 28.2 bits (62), Expect = 4.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 4 NFETPVDGNKEKEYEHNSIYDEKSAKRNIPD-VESKTEENTTHIKEEENVPRIEKSTVEN 62
N E V+ N E+ E + + + NI + +E EEN EENV IE++ EN
Sbjct: 1048 NAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENV-----EENVEEIEENVEEN 1102
Query: 63 IPD 65
+ +
Sbjct: 1103 VEE 1105
Score = 27.8 bits (61), Expect = 5.1
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 4 NFETPVDGNKEKEYEHNSIYDEKSAKRNIPD-VESKTEENTTHIKE---EENVPRIEKST 59
N E V+ N E+ E N E++ + N+ + VE EEN E EENV ++
Sbjct: 970 NVEENVEENVEENVEENV---EENVEENVEENVEENIEENVEENVEENIEENVEEYDEEN 1026
Query: 60 VENIPD--VQKKKEHVPPVKKYIEEN 83
VE + + + +E+V +++ EEN
Sbjct: 1027 VEEVEENVEEYDEENVEEIEENAEEN 1052
Score = 27.8 bits (61), Expect = 6.6
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 4 NFETPVDGNKEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENI 63
N E ++ N E+ E N E++ + + + EEN EE IE+ EN+
Sbjct: 1010 NVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENV 1069
Query: 64 PDVQKKKEHVPPVKKYIEEN 83
++++ E +++ +EEN
Sbjct: 1070 EEIEENIEE--NIEENVEEN 1087
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 29.1 bits (66), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 63 IPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFG 100
I +++K +E V K EE D + C PLV+K G
Sbjct: 564 ISNLEKVEEDVRTEKVTQEETDETCPKCGGGPLVLKLG 601
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 28.6 bits (64), Expect = 3.2
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 12 NKEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVEN 62
NK + E N I +E+ K I + E I+ EE V V
Sbjct: 174 NKLFDEEMNQIVEEELKKHEI---NLRLNEEVDSIEGEERVKVFTSGGVYQ 221
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 28.1 bits (63), Expect = 3.4
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 32 IPDVESKTEENT----THIKEEENVPRIEKSTVENIPDVQKKKEHVPPV 76
P +E + E + N P++ KS E I ++KK E P V
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNGPKVHKSLAE-ILGIKKKVEERPKV 191
>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
fusion protein; Provisional.
Length = 906
Score = 28.6 bits (64), Expect = 3.6
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 26 KSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYI 80
KS +PD E K +I+E+E + I K ++I ++ + K+++
Sbjct: 513 KSLGNELPDEEFKR-----NIEEDELLELILKLYSKDIVELFDAILNAEIKKEFV 562
>gnl|CDD|145131 pfam01806, Paramyxo_P, Paramyxovirinae P phosphoprotein C-terminal
region. The subfamily Paramyxovirinae of the family
Paramyxoviridae now contains as main genera the
Rubulaviruses, avulaviruses, respiroviruses,
Henipavirus-es and morbilliviruses. Protein P is the
best characterized, structurally of the replicative
complex of N, P and L proteins and consists of two
functionally distinct moieties, an N-terminal PNT, and a
C-terminal PCT. The P protein is an essential part of
the viral RNA polymerase complex formed from the P and L
proteins. P protein plays a crucial role in the enzyme
by positioning L onto the N/RNA template through an
interaction with the C-terminal domain of N. Without P,
L is not functional.The C-terminal part of P (PCT) is
only functional as an oligomer and forms with L the
polymerase complex. PNT is poorly conserved and
unstructured in solution while PCT contains the
oligomerisation domain (PMD) that folds as a
homotetrameric coiled coil (40) containing the L binding
region and a C-terminal partially folded domain, PX
(residues 474 to 568), identified as the nucleocapsid
binding site. Interestingly, PX is also expressed as an
independent polypeptide in infected cells. PX has a
C-subdomain (residues 516 to 568) that consists of three
{alpha}-helices arranged in an antiparallel
triple-helical bundle linked to an unfolded flexible
N-subdomain (residues 474 to 515).
Length = 248
Score = 28.0 bits (62), Expect = 3.7
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 18 EHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVK 77
E N + D +A R +P E T + + E + R EK K + V V
Sbjct: 179 EINRLNDASNASRLVPSREKSTMHSLILVIENSPLSRKEKQAYIKSLKKCKTDQEVKEVM 238
Query: 78 KYIEENDVSRQ 88
+ EE D+S
Sbjct: 239 ELFEE-DISSL 248
>gnl|CDD|227272 COG4936, PocR, Predicted sensor domain [Signal transduction
mechanisms / Transcription].
Length = 169
Score = 26.8 bits (59), Expect = 7.2
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 22 IYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQK 68
+Y + RNI V + + +VP +EKS V DV
Sbjct: 109 LYSKDDEDRNIGIVSDLWLTDEELLDNFRSVPIVEKSRVIASADVLF 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.418
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,360,101
Number of extensions: 1034787
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 31
Length of query: 225
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 132
Effective length of database: 6,812,680
Effective search space: 899273760
Effective search space used: 899273760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.7 bits)