RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15092
(225 letters)
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein;
2.21A {Homo sapiens}
Length = 110
Score = 117 bits (294), Expect = 4e-34
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---S 185
R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS + V
Sbjct: 9 ARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVP 68
Query: 186 GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
G P PCCVPE ++ L +L+ + VL+ + +M VESC
Sbjct: 69 GIPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCA 108
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor,
cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Length = 110
Score = 113 bits (284), Expect = 1e-32
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
++ L V F D+GWD WII P+ +++Y C G C FP+ + P+ HA +Q+ ++L
Sbjct: 9 QKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTK 68
Query: 187 TPGPCCVPETLTPLRVLYQ-ESPYITVLRYFQDMRVESCG 225
CCVP L+P+ VLY+ + T+ +++ M V CG
Sbjct: 69 VGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECG 108
>3evs_B Growth/differentiation factor 5; ligand-receptor complex,
cystin-knot ligand, three-finger to (receptor); 2.10A
{Homo sapiens} PDB: 1waq_A 3qb4_A 2bhk_A
Length = 117
Score = 111 bits (279), Expect = 9e-32
Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
RK L V F D+GWD WII P +++++C G C FP+ L P++HA +Q+ M +
Sbjct: 17 SRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPES 76
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
TP CCVP L+P+ +L+ +S V + ++DM VESCG
Sbjct: 77 TPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 115
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily,
ligand-receptor complex, hormone/growth factor complex;
1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A
3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Length = 114
Score = 111 bits (278), Expect = 9e-32
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
KR PL V F D+GW+ WI+ P + ++YC G+C FP+ L ++HA +Q+ + V S
Sbjct: 15 KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P CCVP L+ + +LY + VL+ +QDM VE CG
Sbjct: 75 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 112
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor,
hormone-growth factor complex; HET: NAG; 2.00A {Homo
sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L*
2qcw_A 2r53_A
Length = 139
Score = 112 bits (280), Expect = 9e-32
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
K+ L V F DLGW WII P+ + +YYC G+C+FP+ + ++HA +Q+ ++ ++
Sbjct: 39 KKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPET 98
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCC P L + VLY + +L+ +++M V +CG
Sbjct: 99 VPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG 137
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 111 bits (278), Expect = 2e-31
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
++ L V F DLGW WII P+ + + YC G+CSFP+ + ++HA +Q+ ++L+
Sbjct: 43 RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 102
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
P PCC P L + VLY + +L+ +++M V +CG
Sbjct: 103 VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 141
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain,
kazal domain, PROT complex, hormone-growth factor
complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2
PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Length = 116
Score = 105 bits (262), Expect = 2e-29
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSS--HAYLQSAMYLVS- 185
+K V F D+GW+ WII P + + YC G+C I S H+ + + +
Sbjct: 12 CKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGH 71
Query: 186 ---GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
CCVP L P+ +LY + + + Q+M VE CG
Sbjct: 72 SPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG 114
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB
domain, cystine knot motif, TGF- fold, disulfide linked
dimer, CLE PAIR of basic residues, cytokine; HET: CIT;
2.15A {Mus musculus} PDB: 3sek_B*
Length = 109
Score = 99 bits (249), Expect = 2e-27
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 119 CSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQ 178
C + R PL V F GWD WII P+ +++ YCSG+C F + P +H Q
Sbjct: 6 CDEHSTESRCCRYPLTVDFEAFGWD-WIIAPKRYKANYCSGECEFVFLQKY-PHTHLVHQ 63
Query: 179 SAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
G+ GPCC P ++P+ +LY + M V+ CG
Sbjct: 64 ---ANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCG 107
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP:
g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C
1kla_A 1klc_A 1kld_A 3kfd_A
Length = 112
Score = 96.9 bits (241), Expect = 4e-26
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
+PL + F +WI EP+ + + +C+G C + + + H+ + S +
Sbjct: 16 CLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLW---SSDTQHSRVLSLYNTINPEA 72
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
+ PCCV + L PL +LY + +M V+SC
Sbjct: 73 SASPCCVSQDLEPLTILYYIGKTP-KIEQLSNMIVKSCK 110
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin,
cytokine; HET: NAG; 3.05A {Sus scrofa}
Length = 363
Score = 97.7 bits (242), Expect = 3e-24
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 9/147 (6%)
Query: 84 DVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPK---RKPLVVKFGDL 140
D++ +P ++ + + + C K + L + F
Sbjct: 219 DLATIHGMNRPFLLLMATPLERAQHLHSSRHRRALDTNYCFSSTEKNCCVRQLYIDFRKD 278
Query: 141 GWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SGTPGPCCVPETLT 198
+WI EP+ + + +C G C + + ++ + + + PCCVP+ L
Sbjct: 279 LGWKWIHEPKGYHANFCLGPCPYIWS---LDTQYSKVLALYNQHNPGASAAPCCVPQALE 335
Query: 199 PLRVLYQESPYITVLRYFQDMRVESCG 225
PL ++Y + +M V SC
Sbjct: 336 PLPIVYYVGRKP-KVEQLSNMIVRSCK 361
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth
factor, sulfates, hormone/growth factor complex; 1.55A
{Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Length = 113
Score = 63.8 bits (155), Expect = 1e-13
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 9/100 (9%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--- 185
+ + +V LG E F +CSG C + A+
Sbjct: 17 RLRSQLVPVRALGLGHRSDELVRF--RFCSGSCRRARSPHDLSLASLLGAGALRPPPGSR 74
Query: 186 GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
PCC P + + S + TV + +CG
Sbjct: 75 PVSQPCCRPTRYEAVSFMDVNSTWRTV----DRLSATACG 110
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor,
cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2
PDB: 3fub_B* 2v5e_B*
Length = 135
Score = 57.8 bits (139), Expect = 4e-11
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 16/102 (15%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAM-----YL 183
+ + DLG E F YCSG C + + + +
Sbjct: 43 VLTAIHLNVTDLGLGYETKEELIF--RYCSGSCEAAE------TMYDKILKNLSRSRRLT 94
Query: 184 VSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
CC P +S V + + CG
Sbjct: 95 SDKVGQACCRPVAFDDDLSFLDDS---LVYHILRKHSAKRCG 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 56/181 (30%)
Query: 2 SPNFETPVDGNKEKEYEHNSIYDEKS---AKRNIP-------DVESKTEEN--------- 42
PN+ + D + + +SI E + +V++ N
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 43 -TT---HIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIE--ENDVSRQSCERKPLV 96
TT + + + ++++ E + KY++ D+ R+ P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 97 VK-FGDL------GWDQW----------IIE-------PQSFQSYYCSGKCS-FP----I 127
+ + WD W IIE P ++ + + S FP I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHI 387
Query: 128 P 128
P
Sbjct: 388 P 388
Score = 31.4 bits (70), Expect = 0.30
Identities = 30/228 (13%), Positives = 61/228 (26%), Gaps = 67/228 (29%)
Query: 9 VDGNKEKEYEHNSIYDEKSAKRNIPDVESKTEE-------NTTHIKEEENVPRIEKSTVE 61
V+ Y+ + ++ P + ++ N + + NV R++
Sbjct: 83 VEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP---- 136
Query: 62 NIPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSG 121
K ++ + V+ G LG SG
Sbjct: 137 ----YLKLRQAL--------------LELRPAKNVLIDGVLG----------------SG 162
Query: 122 KCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCS-GKCSFPIPKALAPSSHAYLQSA 180
K + + D+ + F+ ++ + C+ P L Q
Sbjct: 163 KTW--------VAL---DVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQID 210
Query: 181 MYLVSGTPGPCCVPETL----TPLRVLYQESPYIT---VLRYFQDMRV 221
S + + + LR L + PY VL Q+ +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.014
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 63/197 (31%)
Query: 58 STVENIPDVQKKKEHVPPVKKYIEENDVSRQSCERKP--------------LVVKFGDLG 103
++ K + + +K YI ++++ ++K LV FG G
Sbjct: 107 KLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--G 162
Query: 104 WDQ-----WIIEPQS-FQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYC 157
Q + E + +Q+Y+ L+ + + I + +
Sbjct: 163 --QGNTDDYFEELRDLYQTYH---------VLVGDLIKFSAET-LSELIRTTLDAEKVFT 210
Query: 158 SGKCSFPIPKAL-----APSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITV 212
G I + L P YL S +S PL + Q + Y+
Sbjct: 211 QG---LNILEWLENPSNTPDK-DYLLSI--PISC------------PLIGVIQLAHYVVT 252
Query: 213 LRYF----QDMRVESCG 225
+ ++R G
Sbjct: 253 AKLLGFTPGELRSYLKG 269
Score = 26.6 bits (58), Expect = 9.5
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 35/106 (33%)
Query: 104 WDQWIIEPQSFQSYYCSGKCSFPI-------PKRKPLVVKFGDLGWDQWIIE---PQSFQ 153
W++ + +Y F I P L + FG + I E F+
Sbjct: 1646 WNR--ADNHFKDTY------GFSILDIVINNPVN--LTIHFGGEK-GKRIRENYSAMIFE 1694
Query: 154 SYYCSGKCSFPIPKALAPSSHAYL--------------QSAMYLVS 185
+ + I K + S +Y Q A+ L+
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.418
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,458,596
Number of extensions: 193808
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 33
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.7 bits)