RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15092
         (225 letters)



>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score =  111 bits (280), Expect = 2e-32
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 4   KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 63

Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     VL+ +QDM VE CG
Sbjct: 64  PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 101


>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score =  109 bits (274), Expect = 1e-31
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
           K+  L V F DLGW  WII P+ + +YYC G+C+FP+   +  ++HA +Q+ ++ +    
Sbjct: 4   KKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPET 63

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 64  VPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG 102


>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 116

 Score =  101 bits (253), Expect = 2e-28
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---- 184
            +K   V F D+GW+ WII P  + + YC G+C   I      SS ++  + +       
Sbjct: 12  CKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTS-GSSLSFHSTVINHYRMRG 70

Query: 185 ---SGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                    CCVP  L P+ +LY +     + +  Q+M VE CG
Sbjct: 71  HSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG 114


>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 112

 Score = 98.1 bits (244), Expect = 4e-27
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
             +PL + F      +WI EP+ + + +C+G C +      + + H+ + S    +    
Sbjct: 16  CLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLW---SSDTQHSRVLSLYNTINPEA 72

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           +  PCCV + L PL +LY        +    +M V+SC 
Sbjct: 73  SASPCCVSQDLEPLTILYYIGKTP-KIEQLSNMIVKSCK 110


>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 76.1 bits (187), Expect = 8e-19
 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 16/102 (15%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---- 184
               + +   DLG        +     YCSG C          + +  +   +       
Sbjct: 5   VLTAIHLNVTDLGLG--YETKEELIFRYCSGSCEAA------ETMYDKILKNLSRSRRLT 56

Query: 185 -SGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                  CC P           +S    V    +    + CG
Sbjct: 57  SDKVGQACCRPVAFDDDLSFLDDS---LVYHILRKHSAKRCG 95


>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
           coli [TaxId: 562]}
          Length = 431

 Score = 25.8 bits (56), Expect = 5.7
 Identities = 10/51 (19%), Positives = 15/51 (29%)

Query: 155 YYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQ 205
               G  S P    +    +A++  A   VS       +     P  VL  
Sbjct: 189 ALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVI 239


>d1vzia1 b.1.13.1 (A:38-125) Desulfoferrodoxin C-terminal domain
          {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId:
          887]}
          Length = 88

 Score = 23.6 bits (51), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 41 ENTTHIKEEENVPRIEKS 58
          ENT    + ++VP IEK 
Sbjct: 1  ENTVDAAKAKHVPVIEKI 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,931
Number of extensions: 43244
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 13
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.7 bits)