BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15093
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YV7|A Chain A, Crystal Structure Of The Clic Homolog From Drosophila
Melanogaster
Length = 260
Score = 275 bits (703), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 127/166 (76%), Positives = 140/166 (84%)
Query: 10 RTNFEATPPPILIDNGLAVLENEKIERHIMKNVPGGHNLFVQDKEVATLIENLYSXXXXX 69
RTNFEAT PPILIDNGLA+LENEKIERHIMKN+PGG+NLFVQDKEVATLIENLY
Sbjct: 76 RTNFEATHPPILIDNGLAILENEKIERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLM 135
Query: 70 XXXXDDVSINALMSHLRKINDHLGRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQF 129
D+ NAL+SHLRKINDHL + TRFLTGDTMCCFDCELMPRLQHIRVAG YF+ F
Sbjct: 136 LVKKDEAKNNALLSHLRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDF 195
Query: 130 EIPTYMKHLWHYMKHMYELEAFTQSCPADQDIINHYKLQQVWLMRR 175
EIPT++ LW YM HMY+L+AFTQSCPADQDIINHYKLQQ M++
Sbjct: 196 EIPTHLTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKK 241
>pdb|2YV9|A Chain A, Crystal Structure Of The Clic Homologue Exc-4 From C.
Elegans
pdb|2YV9|B Chain B, Crystal Structure Of The Clic Homologue Exc-4 From C.
Elegans
Length = 291
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 90/192 (46%), Gaps = 30/192 (15%)
Query: 3 NTRDKKARTNFEATPPPILID--NGLAVLENEKIERHIMK-----NVPGGHNLFVQDKEV 55
N + + NF PPI+I+ L +N +IE I NVP LF +D
Sbjct: 64 NVNSEAFKKNFLGAQPPIMIEEEKELTYTDNREIEGRIFHLAKEFNVP----LFEKDPSA 119
Query: 56 ATLIENLYSXXXXXXXXXDD-------------------VSINALMSHLRKINDHLGRKE 96
IENLY + V N + L I+ L ++
Sbjct: 120 EKRIENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNIDQLLSERK 179
Query: 97 TRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFTQSCP 156
+R+L G++M +DCELMPRL HIR+ G + F+IP HLW Y+ Y AF +SCP
Sbjct: 180 SRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGFDIPHNFTHLWAYILTAYRTAAFIESCP 239
Query: 157 ADQDIINHYKLQ 168
ADQDII+HYK Q
Sbjct: 240 ADQDIIHHYKEQ 251
>pdb|2R4V|A Chain A, Structure Of Human Clic2, Crystal Form A
pdb|2R5G|A Chain A, Structure Of Human Clic2, Crystal Form B
Length = 247
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 99 FLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFTQSCPAD 158
FL GD + DC L+P+L I+VA + F+IP +W Y+ + Y E FT +CP D
Sbjct: 173 FLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPED 232
Query: 159 QDIINHY 165
++I N Y
Sbjct: 233 KEIENTY 239
>pdb|2PER|A Chain A, Crystal Structure Of Human Chloride Intracellular Channel
Protein 2
Length = 267
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 99 FLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFTQSCPAD 158
FL GD + DC L+P+L I+VA + F+IP +W Y+ + Y E FT +CP D
Sbjct: 193 FLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPED 252
Query: 159 QDIINHY 165
++I N Y
Sbjct: 253 KEIENTY 259
>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
Length = 261
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 98 RFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFTQSCPA 157
+FL G+ M DC L+P+L ++V + F+IP M +W Y+ + Y + FT +CP+
Sbjct: 177 KFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPS 236
Query: 158 DQDI 161
D+++
Sbjct: 237 DKEV 240
>pdb|2AHE|A Chain A, Crystal Structure Of A Soluble Form Of Clic4.
Intercellular Chloride Ion Channel
Length = 267
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 98 RFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFTQSCPA 157
+FL G+ M DC L+P+L ++V + F+IP M +W Y+ + Y + FT +CP+
Sbjct: 177 KFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPS 236
Query: 158 DQDI 161
D+++
Sbjct: 237 DKEV 240
>pdb|3TGZ|A Chain A, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
pdb|3TGZ|B Chain B, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
Length = 241
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + +W Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVWRYLSNAYAREEFA 220
Query: 153 QSCPADQDIINHYK 166
+CP D++I Y+
Sbjct: 221 STCPDDEEIELAYE 234
>pdb|3P90|A Chain A, Crystal Structure Analysis Of H207f Mutant Of Human Clic1
Length = 241
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + ++ Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVFRYLSNAYAREEFA 220
Query: 153 QSCPADQDIINHYK 166
+CP D++I Y+
Sbjct: 221 STCPDDEEIELAYE 234
>pdb|3SWL|A Chain A, Crystal Structure Analysis Of H74a Mutant Of Human Clic1
Length = 236
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 156 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 215
Query: 153 QSCPADQDI 161
+CP D++I
Sbjct: 216 STCPDDEEI 224
>pdb|3O3T|A Chain A, Crystal Structure Analysis Of M32a Mutant Of Human Clic1
Length = 241
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 220
Query: 153 QSCPADQDI 161
+CP D++I
Sbjct: 221 STCPDDEEI 229
>pdb|1RK4|A Chain A, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
pdb|1RK4|B Chain B, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
Length = 243
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 163 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 222
Query: 153 QSCPADQDI 161
+CP D++I
Sbjct: 223 STCPDDEEI 231
>pdb|1K0O|A Chain A, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0O|B Chain B, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0N|A Chain A, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0N|B Chain B, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0M|A Chain A, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
Length = 241
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 220
Query: 153 QSCPADQDI 161
+CP D++I
Sbjct: 221 STCPDDEEI 229
>pdb|3UVH|A Chain A, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
pdb|3UVH|B Chain B, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
Length = 241
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 220
Query: 153 QSCPADQDI 161
+CP D++I
Sbjct: 221 STCPDDEEI 229
>pdb|3P8W|A Chain A, Crystal Structure Analysis Of R29mE81M DOUBLE MUTANT OF
HUMAN CLIC1
Length = 241
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 220
Query: 153 QSCPADQDI 161
+CP D++I
Sbjct: 221 STCPDDEEI 229
>pdb|3QR6|A Chain A, Crystal Structure Analysis Of H185f Mutant Of Human Clic1
Length = 241
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 161 GVSQRKFLDGNELTLADCNLLPKLFIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 220
Query: 153 QSCPADQDIINHYK 166
+CP D++I Y+
Sbjct: 221 STCPDDEEIELAYE 234
>pdb|4IQA|A Chain A, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
pdb|4IQA|B Chain B, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
Length = 236
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 93 GRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTYMKHLWHYMKHMYELEAFT 152
G + +FL G+ + DC L+P+L ++V + F IP + + Y+ + Y E F
Sbjct: 156 GVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFA 215
Query: 153 QSCPADQDI 161
+CP D+ I
Sbjct: 216 STCPDDELI 224
>pdb|3FY7|A Chain A, Crystal Structure Of Homo Sapiens Clic3
pdb|3FY7|B Chain B, Crystal Structure Of Homo Sapiens Clic3
pdb|3KJY|A Chain A, Crystal Structure Of Reduced Homo Sapiens Clic3
pdb|3KJY|B Chain B, Crystal Structure Of Reduced Homo Sapiens Clic3
Length = 250
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 75 DVSINALMSHLRKINDHLGRKETRFLTGDTMCCFDCELMPRLQHIRVAGSYFMQFEIPTY 134
D + A + H L RFL GD + DC L+P+L + ++F Q IP
Sbjct: 159 DSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAE 218
Query: 135 MKHLWHYMKHMYELEAFTQSCPADQDIINHYK 166
++ + Y+ + + F +CP +I+ Y+
Sbjct: 219 LRGVRRYLDSAMQEKEFKYTCPHSAEILAAYR 250
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 19 PILIDNGLAVLENEKIERHIMKNVPGGHNLFVQDKEVATLIE 60
P L+D+GL++ E+ I +++ G +L+ +D + L++
Sbjct: 55 PTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVD 96
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 8 KARTNFEATPPPILIDNGLAVLENEKIERHIMKNVPGGHN 47
KA + +T P LI +GL+V+E EK++ ++M + G N
Sbjct: 63 KAVDHINSTIAPALISSGLSVVEQEKLD-NLMLELDGTEN 101
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 8 KARTNFEATPPPILIDNGLAVLENEKIERHIMKNVPGGHN 47
KA + +T P LI +GL+V+E EK++ ++M + G N
Sbjct: 63 KAVDHINSTIAPALISSGLSVVEQEKLD-NLMLELDGTEN 101
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 8 KARTNFEATPPPILIDNGLAVLENEKIERHIMKNVPGGHN 47
KA + +T P LI +GL+V+E EK++ ++M + G N
Sbjct: 63 KAVDHINSTIAPALISSGLSVVEQEKLD-NLMLELDGTEN 101
>pdb|3T7Y|A Chain A, Structure Of An Autocleavage-Inactive Mutant Of The
Cytoplasmic Domain Of Ct091, The Yscu Homologue Of
Chlamydia Trachomatis
pdb|3T7Y|B Chain B, Structure Of An Autocleavage-Inactive Mutant Of The
Cytoplasmic Domain Of Ct091, The Yscu Homologue Of
Chlamydia Trachomatis
Length = 97
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 28 VLENEKIERHIMKNVPGGHNLFVQDKEVATLIENLY 63
+ E EK IM+NVP H L + KE+ + E Y
Sbjct: 48 IAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTY 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,149,303
Number of Sequences: 62578
Number of extensions: 181192
Number of successful extensions: 481
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 22
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)