BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15097
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 20 PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
P G V F S + FT+ FA+ YA+ ++ + RLWGD +FN KTK
Sbjct: 204 PARGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKAKMMDRLWGDSFFNPKTK 255
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 74 VEPVNPSELPKMLDGLRKVNKSYP 97
VE N ++LPK+++GL++++KS P
Sbjct: 493 VEVKNANDLPKLVEGLKRLSKSDP 516
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 20 PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
P G V F S + FT+ FA+ YA+ ++ + RLWGD +FN KTK
Sbjct: 204 PARGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKAKMMDRLWGDSFFNPKTK 255
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 74 VEPVNPSELPKMLDGLRKVNKSYP 97
VE N ++LPK+++GL++++KS P
Sbjct: 493 VEVKNANDLPKLVEGLKRLSKSDP 516
>pdb|1TTU|A Chain A, Crystal Structure Of Csl Bound To Dna
pdb|2FO1|A Chain A, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
pdb|3BRD|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, P212121
Length = 477
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 16 KYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVE 75
+YL + GN AS+ FT+H L+ T FA R G +Y+ S K+V+
Sbjct: 220 RYLH-VEGNAFHASSTKWGAFTIH----LFDDERGLQETDNFAVRD-GFVYYGSVVKLVD 273
Query: 76 PVNPSELPKMLDGLRKVNKSYPLL 99
V LP++ +RKV+K +L
Sbjct: 274 SVTGIALPRLR--IRKVDKQQVIL 295
>pdb|3BRF|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C2221
Length = 478
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 16 KYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVE 75
+YL + GN AS+ FT+H L+ T FA R G +Y+ S K+V+
Sbjct: 221 RYLH-VEGNAFHASSTKWGAFTIH----LFDDERGLQETDNFAVRD-GFVYYGSVVKLVD 274
Query: 76 PVNPSELPKMLDGLRKVNKSYPLL 99
V LP++ +RKV+K +L
Sbjct: 275 SVTGIALPRLR--IRKVDKQQVIL 296
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 20/64 (31%)
Query: 38 LHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYP 97
+ S+ASL AQ + T+N + D+YF L+K+ K Y
Sbjct: 20 VKSYASLLAQLNGTVNNNSALSNVNSDIYFK--------------------LKKLEKEYE 59
Query: 98 LLTL 101
LLTL
Sbjct: 60 LLTL 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,115,164
Number of Sequences: 62578
Number of extensions: 106682
Number of successful extensions: 212
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 7
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)