Query psy15097
Match_columns 106
No_of_seqs 137 out of 613
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:31:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469|consensus 99.9 2.8E-28 6E-33 205.1 7.3 77 1-78 184-261 (842)
2 KOG0468|consensus 99.9 6.3E-23 1.4E-27 176.3 6.7 90 2-92 284-379 (971)
3 KOG0467|consensus 99.7 6.8E-18 1.5E-22 146.4 4.0 95 2-97 159-268 (887)
4 PLN00116 translation elongatio 99.6 3.5E-16 7.7E-21 136.9 6.7 76 2-78 185-261 (843)
5 PTZ00416 elongation factor 2; 99.5 2.2E-14 4.8E-19 125.7 5.7 76 2-78 179-255 (836)
6 cd01885 EF2 EF2 (for archaea a 99.3 6.2E-13 1.3E-17 100.9 2.1 45 2-46 160-210 (222)
7 cd04167 Snu114p Snu114p subfam 98.6 3.1E-08 6.7E-13 73.1 3.1 43 3-46 159-201 (213)
8 PRK07560 elongation factor EF- 96.6 0.0011 2.3E-08 58.0 1.6 43 2-44 174-218 (731)
9 TIGR00490 aEF-2 translation el 95.8 0.0034 7.3E-08 54.9 0.8 41 3-43 174-216 (720)
10 KOG0468|consensus 95.6 0.0062 1.4E-07 54.2 1.7 26 76-101 593-618 (971)
11 PF14492 EFG_II: Elongation Fa 93.4 0.021 4.6E-07 36.4 -0.0 30 73-102 9-38 (75)
12 COG0480 FusA Translation elong 91.8 0.12 2.5E-06 45.8 2.3 30 74-103 411-440 (697)
13 PRK12739 elongation factor G; 89.7 0.25 5.5E-06 43.1 2.4 27 76-102 412-438 (691)
14 PLN00116 translation elongatio 89.5 0.25 5.5E-06 44.2 2.4 31 73-103 492-522 (843)
15 PTZ00416 elongation factor 2; 87.4 0.32 7E-06 43.5 1.7 31 73-103 486-516 (836)
16 PRK13351 elongation factor G; 86.9 0.57 1.2E-05 40.7 2.8 29 74-102 409-437 (687)
17 TIGR00484 EF-G translation elo 86.2 0.56 1.2E-05 40.9 2.4 27 76-102 413-439 (689)
18 PRK00007 elongation factor G; 86.2 0.58 1.3E-05 40.9 2.5 27 76-102 415-441 (693)
19 KOG0467|consensus 86.1 0.18 3.9E-06 45.4 -0.6 27 76-102 478-504 (887)
20 PRK07560 elongation factor EF- 83.9 0.64 1.4E-05 40.9 1.8 27 76-102 397-423 (731)
21 PRK12740 elongation factor G; 83.7 0.87 1.9E-05 39.3 2.5 27 76-102 394-420 (668)
22 TIGR00490 aEF-2 translation el 81.7 0.83 1.8E-05 40.2 1.6 28 75-102 396-423 (720)
23 PF11411 DNA_ligase_IV: DNA li 60.9 3.6 7.7E-05 23.4 0.5 22 63-94 14-35 (36)
24 TIGR00503 prfC peptide chain r 59.2 7.3 0.00016 33.3 2.2 27 75-102 400-426 (527)
25 PF07443 HARP: HepA-related pr 55.6 3.8 8.3E-05 25.2 -0.0 25 67-92 23-47 (55)
26 PRK05433 GTP-binding protein L 47.3 15 0.00033 31.8 2.4 27 76-102 304-330 (600)
27 KOG2795|consensus 47.0 33 0.00072 28.6 4.1 91 14-106 155-256 (372)
28 KOG0465|consensus 46.1 17 0.00036 32.6 2.4 29 75-103 442-470 (721)
29 PRK10757 inositol monophosphat 45.8 8.7 0.00019 29.4 0.6 25 15-39 80-104 (267)
30 PRK00741 prfC peptide chain re 45.7 17 0.00037 31.1 2.4 26 76-102 400-425 (526)
31 TIGR01393 lepA GTP-binding pro 45.7 14 0.0003 32.1 1.8 27 76-102 300-326 (595)
32 cd01642 Arch_FBPase_2 Putative 44.6 9 0.00019 29.2 0.5 25 15-39 76-100 (244)
33 PLN02553 inositol-phosphate ph 44.4 9 0.0002 29.2 0.5 25 15-39 87-111 (270)
34 PRK07080 hypothetical protein; 42.3 48 0.001 27.1 4.3 47 14-64 267-317 (317)
35 cd01636 FIG FIG, FBPase/IMPase 42.1 12 0.00027 26.6 0.9 26 15-40 80-105 (184)
36 COG1570 XseA Exonuclease VII, 40.8 52 0.0011 28.1 4.5 52 54-105 110-169 (440)
37 cd00383 trans_reg_C Effector d 40.7 66 0.0014 19.8 4.1 50 15-66 5-57 (95)
38 PRK10931 adenosine-3'(2'),5'-b 40.1 10 0.00022 28.6 0.2 24 16-39 80-103 (246)
39 PF00165 HTH_AraC: Bacterial r 40.0 35 0.00076 18.6 2.4 24 34-58 18-41 (42)
40 PF14056 DUF4250: Domain of un 39.9 38 0.00082 20.8 2.7 24 51-74 31-55 (55)
41 cd01643 Bacterial_IMPase_like_ 39.1 12 0.00026 28.3 0.4 25 15-39 73-97 (242)
42 cd01639 IMPase IMPase, inosito 38.8 13 0.00028 27.8 0.5 25 15-39 77-101 (244)
43 COG0483 SuhB Archaeal fructose 38.7 11 0.00025 29.0 0.3 25 15-39 81-105 (260)
44 TIGR01331 bisphos_cysQ 3'(2'), 38.3 12 0.00026 28.3 0.3 25 15-39 78-102 (249)
45 cd01517 PAP_phosphatase PAP-ph 36.9 16 0.00035 27.9 0.9 24 15-39 74-97 (274)
46 COG1312 UxuA D-mannonate dehyd 36.3 46 0.00099 27.7 3.4 31 30-61 158-190 (362)
47 PRK12676 bifunctional inositol 35.8 17 0.00037 27.7 0.8 25 15-39 83-107 (263)
48 TIGR02067 his_9_proposed histi 35.2 16 0.00035 27.6 0.6 25 15-39 76-100 (251)
49 cd01515 Arch_FBPase_1 Archaeal 33.4 18 0.0004 27.5 0.6 25 15-39 78-102 (257)
50 cd01641 Bacterial_IMPase_like_ 32.9 20 0.00043 27.0 0.7 25 15-39 74-98 (248)
51 PF05240 APOBEC_C: APOBEC-like 31.8 48 0.001 20.3 2.2 21 83-103 2-22 (55)
52 PLN02911 inositol-phosphate ph 31.0 20 0.00043 28.1 0.5 25 15-39 111-135 (296)
53 TIGR02753 sodN superoxide dism 30.2 34 0.00074 25.0 1.6 9 58-66 83-91 (145)
54 cd01637 IMPase_like Inositol-m 30.0 20 0.00044 26.5 0.4 25 15-39 76-100 (238)
55 cd07013 S14_ClpP Caseinolytic 29.8 48 0.001 23.7 2.3 31 39-70 121-151 (162)
56 PF00459 Inositol_P: Inositol 29.5 10 0.00023 28.6 -1.3 25 15-39 86-110 (270)
57 cd01638 CysQ CysQ, a 3'-Phosph 29.1 19 0.0004 27.0 0.0 25 15-39 76-100 (242)
58 TIGR02378 nirD_assim_sml nitri 29.0 29 0.00062 22.6 0.9 17 23-39 61-77 (105)
59 PRK09511 nirD nitrite reductas 29.0 26 0.00057 23.4 0.8 17 24-40 65-81 (108)
60 PF13413 HTH_25: Helix-turn-he 27.2 72 0.0016 19.4 2.5 19 38-57 44-62 (62)
61 KOG3806|consensus 25.7 1.3E+02 0.0028 22.7 4.0 50 19-70 81-135 (177)
62 PF11874 DUF3394: Domain of un 24.9 10 0.00023 28.5 -2.0 19 22-40 11-29 (183)
63 PLN02737 inositol monophosphat 24.7 25 0.00055 28.7 0.1 25 15-39 153-177 (363)
64 cd03528 Rieske_RO_ferredoxin R 24.4 33 0.00071 21.8 0.5 14 26-39 57-70 (98)
65 PF13806 Rieske_2: Rieske-like 24.1 66 0.0014 21.5 2.0 23 17-39 55-77 (104)
66 PRK09685 DNA-binding transcrip 24.1 67 0.0014 24.3 2.3 26 34-60 274-300 (302)
67 PF15595 Imm31: Immunity prote 23.9 57 0.0012 22.3 1.7 54 30-91 34-89 (107)
68 cd03530 Rieske_NirD_small_Baci 23.2 34 0.00073 21.9 0.4 14 26-39 58-71 (98)
69 PF08971 GlgS: Glycogen synthe 23.1 46 0.001 21.3 1.0 28 33-61 10-37 (66)
70 PF08027 Albumin_I: Albumin I; 23.1 28 0.0006 24.7 0.0 18 31-48 95-112 (120)
71 cd05491 Bromo_TBP7_like Bromod 22.8 39 0.00084 23.9 0.7 21 51-71 64-84 (119)
72 PF05174 CDRN: Cysteine-rich D 22.7 75 0.0016 19.2 1.8 17 33-49 2-18 (52)
73 PF12368 DUF3650: Protein of u 22.1 96 0.0021 16.6 2.0 18 43-61 8-25 (28)
74 cd03529 Rieske_NirD Assimilato 20.9 42 0.0009 21.8 0.5 14 26-39 63-76 (103)
75 cd03474 Rieske_T4moC Toluene-4 20.7 41 0.0009 21.9 0.5 19 21-40 54-72 (108)
76 cd03478 Rieske_AIFL_N AIFL (ap 20.5 43 0.00093 21.3 0.5 14 26-39 56-69 (95)
77 cd03548 Rieske_RO_Alpha_OMO_CA 20.4 42 0.00092 23.2 0.5 14 26-39 73-86 (136)
78 KOG0066|consensus 20.3 2.2E+02 0.0048 25.3 4.9 52 51-103 678-729 (807)
79 PF15650 Tox-REase-9: Restrict 20.3 93 0.002 21.0 2.1 30 66-95 41-70 (89)
80 PRK10219 DNA-binding transcrip 20.2 97 0.0021 19.9 2.2 24 37-61 84-107 (107)
No 1
>KOG0469|consensus
Probab=99.95 E-value=2.8e-28 Score=205.11 Aligned_cols=77 Identities=30% Similarity=0.472 Sum_probs=73.2
Q ss_pred CccccccccccC-CCceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097 1 MLASQFDLYSGE-EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN 78 (106)
Q Consensus 1 ~~n~ii~~~~~~-~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~ 78 (106)
+||++|+||.++ .++..+.|++|+|.|||++|||+|||++||++|++|| +++..+|+++||||.|||++|++|....
T Consensus 184 ~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF-~~~~~kmm~~LWg~~~f~~ktkk~~~s~ 261 (842)
T KOG0469|consen 184 NVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKF-GIDVRKMMNRLWGDNFFNPKTKKWSKSA 261 (842)
T ss_pred cccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHh-CCcHHHHHHHhhcccccCccCCcccccc
Confidence 589999999986 4789999999999999999999999999999999999 9999999999999999999999999764
No 2
>KOG0468|consensus
Probab=99.88 E-value=6.3e-23 Score=176.28 Aligned_cols=90 Identities=43% Similarity=0.820 Sum_probs=79.3
Q ss_pred ccccccccccCCCceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCCCC-
Q psy15097 2 LASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPS- 80 (106)
Q Consensus 2 ~n~ii~~~~~~~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~p~- 80 (106)
+|.+|++|+.+ ....+||..|||||||+..||||||.+||++|++.+.+++.++|++|||||.||+++|++|.++.|+
T Consensus 284 iN~~is~~s~~-~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~ 362 (971)
T KOG0468|consen 284 INNLISTFSKD-DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDG 362 (971)
T ss_pred hcchhhhcccc-cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCC
Confidence 68889999887 5688999999999999999999999999999999996799999999999999999999999988764
Q ss_pred CCch-----HHHHHHHH
Q psy15097 81 ELPK-----MLDGLRKV 92 (106)
Q Consensus 81 dlpk-----l~e~L~~l 92 (106)
..+. ++|.|++|
T Consensus 363 ~~~rsFVeFILePlYKi 379 (971)
T KOG0468|consen 363 SGSRSFVEFILEPLYKI 379 (971)
T ss_pred cccchhhhhhHhHHHHH
Confidence 3333 56677765
No 3
>KOG0467|consensus
Probab=99.70 E-value=6.8e-18 Score=146.37 Aligned_cols=95 Identities=25% Similarity=0.388 Sum_probs=79.7
Q ss_pred ccccccccccC------------CCceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecC
Q psy15097 2 LASQFDLYSGE------------EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNS 69 (106)
Q Consensus 2 ~n~ii~~~~~~------------~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ 69 (106)
||++|++|-.+ ++..+|+|++|||+||||++||+|.+++||++|++|+ +.+.+.+.+.||||+|+++
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl-~~k~~al~k~lwgd~y~~~ 237 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKL-GLKDAALLKFLWGDRYIDP 237 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhc-Chhhhhhhhhhccceeecc
Confidence 78888877311 2478999999999999999999999999999999999 8999999999999999999
Q ss_pred CCcccc-cCCCCCCchHHH--HHHHHHhhCC
Q psy15097 70 KTKIVE-PVNPSELPKMLD--GLRKVNKSYP 97 (106)
Q Consensus 70 ktkk~~-p~~p~dlpkl~e--~L~~l~~~~~ 97 (106)
+||++. +.+++-.++|+. .|.-||+.|-
T Consensus 238 ktk~I~~~~~~~grkplf~~~vle~lw~iy~ 268 (887)
T KOG0467|consen 238 KTKRICEGKKLKGRKPLFVQFVLENLWRIYE 268 (887)
T ss_pred hhhhhhcccCcccCCCccceeehhhHHHHHH
Confidence 999888 445555566665 6667776654
No 4
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.63 E-value=3.5e-16 Score=136.91 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=68.1
Q ss_pred ccccccccccCC-CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097 2 LASQFDLYSGEE-DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN 78 (106)
Q Consensus 2 ~n~ii~~~~~~~-~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~ 78 (106)
+|++|+.|.++. +...|+|.+|||+|||+++||+|++++||.+|.+++ +++.+.|.++||||+||++++++++..+
T Consensus 185 in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~-~~~~~~l~~~lwg~~~~~~~~~~~~~~~ 261 (843)
T PLN00116 185 ANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF-GVDESKMMERLWGENFFDPATKKWTTKN 261 (843)
T ss_pred HHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHh-CCcHHHHHHHhhccceEcCCCceEEecC
Confidence 577788887542 467899999999999999999999999999999999 7899999999999999999999887655
No 5
>PTZ00416 elongation factor 2; Provisional
Probab=99.50 E-value=2.2e-14 Score=125.70 Aligned_cols=76 Identities=30% Similarity=0.469 Sum_probs=64.5
Q ss_pred ccccccccccCC-CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097 2 LASQFDLYSGEE-DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN 78 (106)
Q Consensus 2 ~n~ii~~~~~~~-~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~ 78 (106)
||..+..+..+. +.+.|+|..|||.|+|+.+|||||+++|+.+|++++ +++...+.+++|||+||+++++++...+
T Consensus 179 in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~-~~~~~~l~~~~wg~~~~~~~~~~~~~~~ 255 (836)
T PTZ00416 179 VNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKF-GVEESKMMERLWGDNFFDAKTKKWIKDE 255 (836)
T ss_pred HHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhc-CCcHHHHHHHHhccccccCCCCEEEecc
Confidence 455555555432 246799999999999999999999999999999999 8999999999999999999998877543
No 6
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.31 E-value=6.2e-13 Score=100.87 Aligned_cols=45 Identities=36% Similarity=0.587 Sum_probs=38.6
Q ss_pred ccccccccccC------CCceeeecCCCceEeeecccceeeeHHHHHHHHH
Q psy15097 2 LASQFDLYSGE------EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYA 46 (106)
Q Consensus 2 ~n~ii~~~~~~------~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~ 46 (106)
+|++|.++.++ ++.+.|||++|||+||||++||||||++||++|.
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~ 210 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYA 210 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHH
Confidence 67788887543 2457899999999999999999999999999994
No 7
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.59 E-value=3.1e-08 Score=73.15 Aligned_cols=43 Identities=42% Similarity=0.703 Sum_probs=34.4
Q ss_pred cccccccccCCCceeeecCCCceEeeecccceeeeHHHHHHHHH
Q psy15097 3 ASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYA 46 (106)
Q Consensus 3 n~ii~~~~~~~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~ 46 (106)
|.++..+.-+ ....|.|.+|||+|+|+++||+||+++||++|.
T Consensus 159 n~~~~~~~~~-~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~ 201 (213)
T cd04167 159 NNIIASFSTT-LSFLFSPENGNVCFASSKFGFCFTLESFAKKYG 201 (213)
T ss_pred HHHHHHhcCC-CceEeccCCCeEEEEecCCCeEEecHHHHhhhh
Confidence 4444444332 237899999999999999999999999999993
No 8
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.56 E-value=0.0011 Score=58.04 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=33.3
Q ss_pred ccccccccccCC--CceeeecCCCceEeeecccceeeeHHHHHHH
Q psy15097 2 LASQFDLYSGEE--DYKYLSPILGNVCFASTQYAMCFTLHSFASL 44 (106)
Q Consensus 2 ~n~ii~~~~~~~--~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~ 44 (106)
+|.+|..|.+++ +.+.++|.+|||+|+|+++||+|+++.+.+.
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~ 218 (731)
T PRK07560 174 VNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKT 218 (731)
T ss_pred HHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHh
Confidence 355666665442 3567899999999999999999998877653
No 9
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=95.79 E-value=0.0034 Score=54.89 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=31.0
Q ss_pred cccccccccCC--CceeeecCCCceEeeecccceeeeHHHHHH
Q psy15097 3 ASQFDLYSGEE--DYKYLSPILGNVCFASTQYAMCFTLHSFAS 43 (106)
Q Consensus 3 n~ii~~~~~~~--~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~ 43 (106)
|.++..+.+++ +.+.++|..|||+|+|++++|+|++++|.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~ 216 (720)
T TIGR00490 174 NKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKK 216 (720)
T ss_pred HhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhh
Confidence 44444443332 346789999999999999999999998844
No 10
>KOG0468|consensus
Probab=95.58 E-value=0.0062 Score=54.18 Aligned_cols=26 Identities=81% Similarity=1.338 Sum_probs=23.9
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTL 101 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~ 101 (106)
|.+|+|+|||+|||++++|+||.+.+
T Consensus 593 P~nPsELPKmldgLrKinKsYPl~~t 618 (971)
T KOG0468|consen 593 PLNPSELPKMLDGLRKINKSYPLVIT 618 (971)
T ss_pred cCChhhhhHHHHHHHhhcccCCcEEE
Confidence 67999999999999999999999754
No 11
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=93.44 E-value=0.021 Score=36.43 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.0
Q ss_pred ccccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
.+.|.++.|.++|.++|.+|+..||++++-
T Consensus 9 ~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~ 38 (75)
T PF14492_consen 9 AIEPKNKEDEPKLSEALQKLSEEDPSLRVE 38 (75)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred EEEECCHhHHHHHHHHHHHHHhcCCeEEEE
Confidence 467889999999999999999999998864
No 12
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=91.80 E-value=0.12 Score=45.79 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=26.6
Q ss_pred cccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097 74 VEPVNPSELPKMLDGLRKVNKSYPLLTLLQ 103 (106)
Q Consensus 74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~ 103 (106)
+.|++++|++||.|+|++|++.||++++..
T Consensus 411 vepk~~~d~~Kl~~aL~~l~~eDPt~~v~~ 440 (697)
T COG0480 411 VEPKTKADQEKLSEALNKLAEEDPTFRVET 440 (697)
T ss_pred EeECChhhHHHHHHHHHHHHhhCCceEEEE
Confidence 346789999999999999999999998864
No 13
>PRK12739 elongation factor G; Reviewed
Probab=89.65 E-value=0.25 Score=43.06 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=25.1
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.++.|.++|.++|++|++.||+++|.
T Consensus 412 p~~~~d~~kL~~aL~~L~~eDpsl~v~ 438 (691)
T PRK12739 412 PKTKADQDKMGLALQKLAEEDPTFRVE 438 (691)
T ss_pred ECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence 568899999999999999999999985
No 14
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=89.50 E-value=0.25 Score=44.16 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=27.1
Q ss_pred ccccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097 73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLLQ 103 (106)
Q Consensus 73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~ 103 (106)
.+.|.+++|.++|.+||++|++.||++++.+
T Consensus 492 aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~ 522 (843)
T PLN00116 492 AVQCKNASDLPKLVEGLKRLAKSDPMVQCTI 522 (843)
T ss_pred EEEECChhhHHHHHHHHHHHHHhCCCeEEEE
Confidence 3447789999999999999999999999753
No 15
>PTZ00416 elongation factor 2; Provisional
Probab=87.43 E-value=0.32 Score=43.51 Aligned_cols=31 Identities=45% Similarity=0.850 Sum_probs=27.1
Q ss_pred ccccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097 73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLLQ 103 (106)
Q Consensus 73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~ 103 (106)
.+.|.+++|.++|.++|++|++.||++++.+
T Consensus 486 aIep~~~~d~~kL~~aL~~L~~eDPsl~~~~ 516 (836)
T PTZ00416 486 AVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT 516 (836)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCceEEEE
Confidence 3447889999999999999999999998754
No 16
>PRK13351 elongation factor G; Reviewed
Probab=86.90 E-value=0.57 Score=40.69 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=26.0
Q ss_pred cccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 74 VEPVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
+.|.+++|.++|.++|++|++.||++++.
T Consensus 409 Iep~~~~d~~kL~~aL~~L~~eDpsl~v~ 437 (687)
T PRK13351 409 VEPERRGDEQKLAEALEKLVWEDPSLRVE 437 (687)
T ss_pred EEECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence 34678999999999999999999999986
No 17
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=86.20 E-value=0.56 Score=40.89 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.8
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.++.|.++|.++|++|++.||+++|.
T Consensus 413 p~~~~d~~kL~~aL~~L~~eDpsl~v~ 439 (689)
T TIGR00484 413 PKTKADQEKMGIALGKLAEEDPTFRTF 439 (689)
T ss_pred ECCcccHHHHHHHHHHHHHhCCEEEEE
Confidence 568899999999999999999999984
No 18
>PRK00007 elongation factor G; Reviewed
Probab=86.15 E-value=0.58 Score=40.92 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.9
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.++.|.++|.++|++|++.||+++|.
T Consensus 415 p~~~~d~~kL~~aL~~L~~eDpsl~v~ 441 (693)
T PRK00007 415 PKTKADQEKMGIALQKLAEEDPSFRVS 441 (693)
T ss_pred ECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence 567899999999999999999999985
No 19
>KOG0467|consensus
Probab=86.10 E-value=0.18 Score=45.43 Aligned_cols=27 Identities=30% Similarity=0.739 Sum_probs=24.8
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.+|+|+++++++||.+++.||||+++
T Consensus 478 p~~p~em~~L~~glkll~~adp~v~i~ 504 (887)
T KOG0467|consen 478 PDDPDEMDKLVEGLKLLNQADPFVKIR 504 (887)
T ss_pred cCChHHhHHHHHHHHhhcccchhhHHH
Confidence 568999999999999999999999874
No 20
>PRK07560 elongation factor EF-2; Reviewed
Probab=83.86 E-value=0.64 Score=40.89 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=24.5
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.+++|.++|.++|.+|++.||+++|.
T Consensus 397 p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (731)
T PRK07560 397 AKNPKDLPKLIEVLRQLAKEDPTLVVK 423 (731)
T ss_pred ECCHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 457889999999999999999999885
No 21
>PRK12740 elongation factor G; Reviewed
Probab=83.73 E-value=0.87 Score=39.30 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.7
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.+++|.++|.++|++|++.||+++|.
T Consensus 394 p~~~~d~~~L~~aL~~l~~~Dpsl~v~ 420 (668)
T PRK12740 394 PKDKGDEEKLSEALGKLAEEDPTLRVE 420 (668)
T ss_pred ECCcchHHHHHHHHHHHHHhCCeEEEE
Confidence 457889999999999999999999985
No 22
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=81.66 E-value=0.83 Score=40.15 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=25.3
Q ss_pred ccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 75 EPVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 75 ~p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
.|.+++|.++|.++|.+|++.||++++.
T Consensus 396 ~p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (720)
T TIGR00490 396 EAKNTKDLPKLIEVLRQVAKEDPTVHVE 423 (720)
T ss_pred EECCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 3568899999999999999999999885
No 23
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=60.93 E-value=3.6 Score=23.41 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=10.9
Q ss_pred ccceecCCCcccccCCCCCCchHHHHHHHHHh
Q psy15097 63 GDMYFNSKTKIVEPVNPSELPKMLDGLRKVNK 94 (106)
Q Consensus 63 Gd~Y~~~ktkk~~p~~p~dlpkl~e~L~~l~~ 94 (106)
||.|+...+ ...|+|.+.+|.+
T Consensus 14 GDSY~~Dtd----------~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 14 GDSYTVDTD----------EDQLKEVFNRIKK 35 (36)
T ss_dssp S-BSSS-------------HHHHHHHHHCS--
T ss_pred cccccccCC----------HHHHHHHHHHhcc
Confidence 677764332 4667777777654
No 24
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=59.17 E-value=7.3 Score=33.32 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=23.6
Q ss_pred ccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 75 EPVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 75 ~p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
.|++++|.++|.+||.||+.-|| ++++
T Consensus 400 ~~~~~~d~~kl~~aL~~L~eED~-l~v~ 426 (527)
T TIGR00503 400 RLKDPLKQKQLLKGLVQLSEEGA-VQVF 426 (527)
T ss_pred EECChhhHHHHHHHHHHHHhhCC-eEEE
Confidence 35688999999999999999998 7775
No 25
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=55.62 E-value=3.8 Score=25.24 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=19.9
Q ss_pred ecCCCcccccCCCCCCchHHHHHHHH
Q psy15097 67 FNSKTKIVEPVNPSELPKMLDGLRKV 92 (106)
Q Consensus 67 ~~~ktkk~~p~~p~dlpkl~e~L~~l 92 (106)
||++||+|. -..+|-.+|++.++.|
T Consensus 23 YD~~Tr~W~-F~L~Dy~~L~~~~~~l 47 (55)
T PF07443_consen 23 YDPKTRKWN-FSLEDYSTLMKKVRNL 47 (55)
T ss_pred cCccceeee-eeHHHHHHHHHHHhcC
Confidence 699999886 5667888888888777
No 26
>PRK05433 GTP-binding protein LepA; Provisional
Probab=47.28 E-value=15 Score=31.84 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.+.+|-++|.++|.+|+.-||++++.
T Consensus 304 p~~~~d~~kL~~aL~kL~~eD~sl~~~ 330 (600)
T PRK05433 304 PVDSDDYEDLRDALEKLQLNDASLTYE 330 (600)
T ss_pred ECCccCHHHHHHHHHHHHHhCCeEEEE
Confidence 457888999999999999999998874
No 27
>KOG2795|consensus
Probab=46.96 E-value=33 Score=28.64 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=64.0
Q ss_pred CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCC------CCHHHHHHhhhccceecCCCcccc---cCCCCCCch
Q psy15097 14 DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPT------LNTQEFARRLWGDMYFNSKTKIVE---PVNPSELPK 84 (106)
Q Consensus 14 ~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~------~~~~~l~k~LWGd~Y~~~ktkk~~---p~~p~dlpk 84 (106)
+.+.|.-++|.|+=|++..|=++.|..+......-... +..+..-++|=.|++++.-.+.+. +.-|+=.+.
T Consensus 155 G~l~~~~~ng~~id~~~~~~~~~~lp~d~~~i~~i~tdA~~IlIVEKeavFqrL~~d~~~~~~~~~ilITgKGyPD~~TR 234 (372)
T KOG2795|consen 155 GRLRFLEENGDVIDCTESGGGPKALPPDIDDISNITTDAKFILIVEKEAVFQRLAEDNFFNTFNRCILITGKGYPDIATR 234 (372)
T ss_pred eeEEEEEcCCcEEEeccCCCCCccCCCCHHHHhhhhccceEEEEEehHHHHHHHHHHHHHhhcCCeEEEecCCCCcHHHH
Confidence 45777788999999998888888887766666552211 346777788889999876654333 222444443
Q ss_pred HHHHHHHHHhhC--CceeEEeecC
Q psy15097 85 MLDGLRKVNKSY--PLLTLLQWNP 106 (106)
Q Consensus 85 l~e~L~~l~~~~--~~~~~~~~~~ 106 (106)
+ .|++|+... |+.-++||+|
T Consensus 235 ~--fLkkL~~~~~lpv~~LvDaDP 256 (372)
T KOG2795|consen 235 L--FLKKLEEKLKLPVYGLVDADP 256 (372)
T ss_pred H--HHHHHHHHhCCCEEEEeecCC
Confidence 3 577777777 9999999998
No 28
>KOG0465|consensus
Probab=46.14 E-value=17 Score=32.62 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.6
Q ss_pred ccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097 75 EPVNPSELPKMLDGLRKVNKSYPLLTLLQ 103 (106)
Q Consensus 75 ~p~~p~dlpkl~e~L~~l~~~~~~~~~~~ 103 (106)
+|.+.+|.++|.+||.++.+-||+.++.+
T Consensus 442 kP~~k~d~~~fskaL~rf~~EDPtFrv~~ 470 (721)
T KOG0465|consen 442 KPVNKKDADNFSKALNRFTKEDPTFRVSL 470 (721)
T ss_pred cccccccHHHHHHHHHhhcccCCceEEEe
Confidence 35678899999999999999999998865
No 29
>PRK10757 inositol monophosphatase; Provisional
Probab=45.80 E-value=8.7 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=23.0
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++..||.+|-
T Consensus 80 ~WiIDPIDGT~nf~~g~p~~~vsia 104 (267)
T PRK10757 80 QWVIDPLDGTTNFIKRLPHFAVSIA 104 (267)
T ss_pred EEEEeCccCchHHHhCCCcEEEEEE
Confidence 4889999999999999999999884
No 30
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=45.70 E-value=17 Score=31.10 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.6
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|++++|-++|.+||.||+.-|+ ++++
T Consensus 400 p~~~~d~~kl~~aL~~L~eED~-l~~~ 425 (526)
T PRK00741 400 LKNPLKQKQLQKGLVQLSEEGA-VQVF 425 (526)
T ss_pred ECCchhHHHHHHHHHHHhhcCC-eEEE
Confidence 4578899999999999999996 6765
No 31
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=45.67 E-value=14 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.9
Q ss_pred cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097 76 PVNPSELPKMLDGLRKVNKSYPLLTLL 102 (106)
Q Consensus 76 p~~p~dlpkl~e~L~~l~~~~~~~~~~ 102 (106)
|.+.+|-++|.++|.+|..-||++++.
T Consensus 300 p~~~~d~~kL~~aL~kL~~eD~sl~~~ 326 (595)
T TIGR01393 300 PIDTEDYEDLRDALEKLKLNDASLTYE 326 (595)
T ss_pred ECCcccHHHHHHHHHHHhccCCeEEEE
Confidence 457789999999999999999998874
No 32
>cd01642 Arch_FBPase_2 Putative fructose-1,6-bisphosphatase or related enzymes of inositol monophosphatase family. These are Mg++ dependent phosphatases. Members in this family may have fructose-1,6-bisphosphatase and/or inositol-monophosphatase activity. Fructose-1,6-bisphosphatase catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway.
Probab=44.59 E-value=9 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=23.0
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.=|..++..||.+|-
T Consensus 76 ~WiIDPIDGT~NFi~g~P~favsIa 100 (244)
T cd01642 76 IAVLDPLDGSTNYLSGIPFYSVSVA 100 (244)
T ss_pred EEEEeCCcCcHHHHcCCCCeEEEEE
Confidence 4899999999999999999999883
No 33
>PLN02553 inositol-phosphate phosphatase
Probab=44.36 E-value=9 Score=29.25 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=23.1
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++..||.+|-
T Consensus 87 ~WiIDPIDGT~NF~~g~p~~avsIa 111 (270)
T PLN02553 87 TWIVDPLDGTTNFVHGFPFVCVSIG 111 (270)
T ss_pred EEEEecccchhhHhhcCCceEEEEE
Confidence 4899999999999999999999884
No 34
>PRK07080 hypothetical protein; Validated
Probab=42.31 E-value=48 Score=27.11 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=36.5
Q ss_pred CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCC----HHHHHHhhhcc
Q psy15097 14 DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLN----TQEFARRLWGD 64 (106)
Q Consensus 14 ~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~----~~~l~k~LWGd 64 (106)
+.+-|.-+.|.|+.+++ -+|-|+-.|--....+ |++ ++.+.++|||+
T Consensus 267 ~~f~I~~~~g~~ahTgC---vGFGlER~a~All~~h-G~d~~~WP~~Vr~~l~~~ 317 (317)
T PRK07080 267 LTWGIRTADGAVAHTGC---VGFGLERLALALFRHH-GLDPAAWPAAVRDVLWGT 317 (317)
T ss_pred cccCcccCCCCEeEEee---eecCHHHHHHHHHHHh-CCChhhccHHHHHHhcCC
Confidence 34566778899988875 4789998888777777 766 56899999985
No 35
>cd01636 FIG FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in gluconeogenesis. Inositol-monophosphatases and inositol polyphosphatases play vital roles in eukaryotic signalling, as they participate in metabolizing the messenger molecule Inositol-1,4,5-triphosphate. Many of these enzymes are inhibited by Li+.
Probab=42.10 E-value=12 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.5
Q ss_pred ceeeecCCCceEeeecccceeeeHHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLHS 40 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~s 40 (106)
.|.++|..|+--|..++..||-++--
T Consensus 80 ~WiiDPiDGT~nf~~g~p~~~vsial 105 (184)
T cd01636 80 TWVIDPIDGTKNFINGLPFVAVVIAV 105 (184)
T ss_pred EEEEecccChHHHHhCCCCEEEeHHH
Confidence 48899999999999999999988853
No 36
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.77 E-value=52 Score=28.06 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=45.3
Q ss_pred HHHHHHhhhccceecCCCcccccC--------CCCCCchHHHHHHHHHhhCCceeEEeec
Q psy15097 54 TQEFARRLWGDMYFNSKTKIVEPV--------NPSELPKMLDGLRKVNKSYPLLTLLQWN 105 (106)
Q Consensus 54 ~~~l~k~LWGd~Y~~~ktkk~~p~--------~p~dlpkl~e~L~~l~~~~~~~~~~~~~ 105 (106)
-|+|.++|=.+=+||++-|+-.|. ++..+--+++-+..|++.+|.++|.-|+
T Consensus 110 ~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~p 169 (440)
T COG1570 110 FEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYP 169 (440)
T ss_pred HHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 478999999999999999988875 4556777999999999999999998775
No 37
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=40.70 E-value=66 Score=19.84 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=31.7
Q ss_pred ceeeecCCCceEeeecccceeeeHHHHHHH--HHhhC-CCCCHHHHHHhhhccce
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLHSFASL--YAQTS-PTLNTQEFARRLWGDMY 66 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~--Y~~k~-~~~~~~~l~k~LWGd~Y 66 (106)
.+.++|....|.+.. .-..+|-..++=+ .+..- .-++.++|.+.+||+..
T Consensus 5 ~~~~d~~~~~l~~~~--~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~ 57 (95)
T cd00383 5 DLVLDPARREVTRDG--EPVELTPKEFELLELLARNPGRVLSREQLLEAVWGDDY 57 (95)
T ss_pred CEEEehhhCEEEECC--EEEEeCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCCC
Confidence 577888877776543 4455666555432 22222 12789999999999754
No 38
>PRK10931 adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional
Probab=40.12 E-value=10 Score=28.61 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=22.5
Q ss_pred eeeecCCCceEeeecccceeeeHH
Q psy15097 16 KYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 16 ~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
|.++|..|+.-|..++..||.+|-
T Consensus 80 WiIDPIDGT~nF~~g~p~~~vsIa 103 (246)
T PRK10931 80 WLVDPLDGTKEFIKRNGEFTVNIA 103 (246)
T ss_pred EEEecCcChHHHHcCCCCEEEEEE
Confidence 889999999999999999999884
No 39
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=40.00 E-value=35 Score=18.61 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=17.5
Q ss_pred eeeeHHHHHHHHHhhCCCCCHHHHH
Q psy15097 34 MCFTLHSFASLYAQTSPTLNTQEFA 58 (106)
Q Consensus 34 w~Ftl~sFA~~Y~~k~~~~~~~~l~ 58 (106)
++|+...|.+.+.+.+ |+.+.+..
T Consensus 18 ~g~S~~~f~r~Fk~~~-g~tp~~y~ 41 (42)
T PF00165_consen 18 AGFSPSYFSRLFKKET-GMTPKQYR 41 (42)
T ss_dssp HTS-HHHHHHHHHHHT-SS-HHHHH
T ss_pred HCCCHHHHHHHHHHHH-CcCHHHHh
Confidence 4568889999999988 88887654
No 40
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=39.90 E-value=38 Score=20.77 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCCHHHHHHhhhc-cceecCCCccc
Q psy15097 51 TLNTQEFARRLWG-DMYFNSKTKIV 74 (106)
Q Consensus 51 ~~~~~~l~k~LWG-d~Y~~~ktkk~ 74 (106)
+++.++|.++|=. ++.|+++++.|
T Consensus 31 ~id~~~l~~kL~~~Gy~Y~~~~NQF 55 (55)
T PF14056_consen 31 DIDKEELEEKLASIGYEYDEEQNQF 55 (55)
T ss_pred CCCHHHHHHHHHHcCCeEchhhCCC
Confidence 6899999999976 78899988764
No 41
>cd01643 Bacterial_IMPase_like_2 Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate inositol monophosphate or similar substrates.
Probab=39.06 E-value=12 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.8
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++..||.++-
T Consensus 73 ~WiIDPIDGT~nF~~g~p~~~vsia 97 (242)
T cd01643 73 YWVIDPIDGTTNFARGIPIWAISIA 97 (242)
T ss_pred EEEEeCccChHHHhcCCCceEEEEE
Confidence 4889999999999999999998873
No 42
>cd01639 IMPase IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.
Probab=38.79 E-value=13 Score=27.83 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.9
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+--|..++..||.+|-
T Consensus 77 ~WvIDPIDGT~nf~~g~p~~~vsia 101 (244)
T cd01639 77 TWIIDPLDGTTNFVHGFPHFAVSIA 101 (244)
T ss_pred EEEEecccChhHHhcCCCcEEEEEE
Confidence 4889999999999999999998883
No 43
>COG0483 SuhB Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]
Probab=38.72 E-value=11 Score=28.97 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=23.1
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.+.++|..|+.-|.+++.-||.++-
T Consensus 81 ~wVIDPIDGT~NFv~G~P~favSIa 105 (260)
T COG0483 81 VWVIDPIDGTTNFVRGIPFFAVSIA 105 (260)
T ss_pred EEEEcCCCCcHHHHcCCCcceEEEE
Confidence 5889999999999999999998884
No 44
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle.
Probab=38.34 E-value=12 Score=28.27 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=22.9
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++..||.+|-
T Consensus 78 ~WvIDPIDGT~nF~~G~p~~~vsIa 102 (249)
T TIGR01331 78 FWLVDPLDGTKEFINRNGDFTVNIA 102 (249)
T ss_pred EEEEcCCcChHHHhcCCCcEEEEEE
Confidence 4889999999999999999998883
No 45
>cd01517 PAP_phosphatase PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine biosynthesis and provides increased salt tolerance when over-expressed. Bacterial members of this domain family may differ in their substrate specificity and dephosphorylate different targets, as the substrate binding site does not appear to be conserved in that sub-set.
Probab=36.95 E-value=16 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++ .||.+|-
T Consensus 74 ~WiIDPIDGT~nfv~g~-~~~vsIa 97 (274)
T cd01517 74 FWVLDPIDGTKGFLRGD-QFAVALA 97 (274)
T ss_pred EEEEcCCcCchhhhcCC-ceEEEEE
Confidence 48899999999999999 9998873
No 46
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=36.35 E-value=46 Score=27.71 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=25.8
Q ss_pred ccccee--eeHHHHHHHHHhhCCCCCHHHHHHhh
Q psy15097 30 TQYAMC--FTLHSFASLYAQTSPTLNTQEFARRL 61 (106)
Q Consensus 30 al~gw~--Ftl~sFA~~Y~~k~~~~~~~~l~k~L 61 (106)
|+-||. +||.+|.++...-- +|+.++|.++|
T Consensus 158 glPG~~~~~tl~~~~~~~~~y~-~Id~~~L~~nL 190 (362)
T COG1312 158 GLPGWEEGYTLDQFRELLELYG-GIDEEKLWENL 190 (362)
T ss_pred CCCCCcccccHHHHHHHHHHhc-CCCHHHHHHHH
Confidence 799976 99999999987643 79998877776
No 47
>PRK12676 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed
Probab=35.76 E-value=17 Score=27.73 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=22.9
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
-|.++|..|+.-|..++..||-+|-
T Consensus 83 ~WvIDPiDGT~nfv~g~p~~~vsia 107 (263)
T PRK12676 83 TVVLDPLDGTYNAINGIPFYAISIA 107 (263)
T ss_pred EEEEeccCCchHHhcCCCceEEEEE
Confidence 4889999999999999999998875
No 48
>TIGR02067 his_9_proposed histidinol-phosphate phosphatase HisN, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes.
Probab=35.21 E-value=16 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=22.7
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++..||.+|-
T Consensus 76 ~WiiDPIDGT~nF~~g~p~~~vsia 100 (251)
T TIGR02067 76 VWVLDPIDGTKSFIRGVPVWGTLIA 100 (251)
T ss_pred EEEEecCcChhHHhcCCCceEEEEE
Confidence 4889999999999999999998874
No 49
>cd01515 Arch_FBPase_1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (FBPase class IV). These are Mg++ dependent phosphatases. Members in this family may have both fructose-1,6-bisphosphatase and inositol-monophosphatase activity. In hyperthermophilic archaea, inositol monophosphatase is thought to play a role in the biosynthesis of di-myo-inositol-1,1'-phosphate, an osmolyte unique to hyperthermophiles.
Probab=33.42 E-value=18 Score=27.46 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=22.8
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+--|..++..||-++-
T Consensus 78 ~WvIDPIDGT~nfv~g~p~~~isia 102 (257)
T cd01515 78 TVVLDPLDGTYNAINGIPFYSVSVA 102 (257)
T ss_pred EEEEeCcCChhHHhcCCCceEEEEE
Confidence 5889999999999999999998873
No 50
>cd01641 Bacterial_IMPase_like_1 Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.
Probab=32.94 E-value=20 Score=27.02 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.8
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
-|.++|..|+-=|.-++..||.+|-
T Consensus 74 ~WviDPIDGT~nf~~g~p~~~vsia 98 (248)
T cd01641 74 VWVLDPIDGTKSFIRGLPVWGTLIA 98 (248)
T ss_pred EEEEecCcCchhHhcCCCceEEEEE
Confidence 4889999999999999999998884
No 51
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=31.82 E-value=48 Score=20.32 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=15.4
Q ss_pred chHHHHHHHHHhhCCceeEEe
Q psy15097 83 PKMLDGLRKVNKSYPLLTLLQ 103 (106)
Q Consensus 83 pkl~e~L~~l~~~~~~~~~~~ 103 (106)
|.-.|||++|+++--.|.+|.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 345789999999999998886
No 52
>PLN02911 inositol-phosphate phosphatase
Probab=30.95 E-value=20 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=23.0
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.=|.-++..||.+|-
T Consensus 111 ~WiIDPIDGT~NFv~G~p~favsIa 135 (296)
T PLN02911 111 VWVLDPIDGTKSFITGKPLFGTLIA 135 (296)
T ss_pred EEEEeCCcChHHHhcCCCceEEEEE
Confidence 4889999999999999999999884
No 53
>TIGR02753 sodN superoxide dismutase, Ni. This superoxide dismutase uses nickel, rather than iron, manganese, copper, or zinc. Its gene is always accompanied by a gene for a required protease.
Probab=30.22 E-value=34 Score=24.99 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=7.1
Q ss_pred HHhhhccce
Q psy15097 58 ARRLWGDMY 66 (106)
Q Consensus 58 ~k~LWGd~Y 66 (106)
..-|||||+
T Consensus 83 i~vlWtDYF 91 (145)
T TIGR02753 83 ISVLWTDYF 91 (145)
T ss_pred HHHHHHHhc
Confidence 456899987
No 54
>cd01637 IMPase_like Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.
Probab=29.98 E-value=20 Score=26.46 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.5
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.+.++|..|+--|..++..||.++-
T Consensus 76 ~wviDPIDGT~nf~~g~p~~~vsia 100 (238)
T cd01637 76 VWVIDPIDGTTNFVAGLPNFAVSIA 100 (238)
T ss_pred EEEEcceeChhhhhcCCCCEEEEEE
Confidence 4899999999999999999998873
No 55
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=29.80 E-value=48 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=25.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHhhhccceecCC
Q psy15097 39 HSFASLYAQTSPTLNTQEFARRLWGDMYFNSK 70 (106)
Q Consensus 39 ~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~k 70 (106)
..|.+.|+++. |.+.+++.+.+=++.|++++
T Consensus 121 ~~~~~~~a~~t-g~~~~~i~~~~~~~~~~sa~ 151 (162)
T cd07013 121 GNLVSAYAHKT-GQSEEELHADLERDTWLSAR 151 (162)
T ss_pred HHHHHHHHHHh-CcCHHHHHHHHcCCccccHH
Confidence 67888999988 88999988888777777653
No 56
>PF00459 Inositol_P: Inositol monophosphatase family; InterPro: IPR000760 It has been shown that several proteins share two sequence motifs []. Two of these proteins, vertebrate and plant inositol monophosphatase (3.1.3.25 from EC), and vertebrate inositol polyphosphate 1-phosphatase (3.1.3.57 from EC), are enzymes of the inositol phosphate second messenger signalling pathway, and share similar enzyme activity. Both enzymes exhibit an absolute requirement for metal ions (Mg2+ is preferred), and their amino acid sequences contain a number of conserved motifs, which are also shared by several other proteins related to MPTASE (including products of fungal QaX and qutG, bacterial suhB and cysQ, and yeast hal2) []. The function of the other proteins is not yet clear, but it is suggested that they may act by enhancing the synthesis or degradation of phosphorylated messenger molecules []. Structural analysis of these proteins has revealed a common core of 155 residues, which includes residues essential for metal binding and catalysis. An interesting property of the enzymes of this family is their sensitivity to Li+. The targets and mechanism of action of Li+ are unknown, but overactive inositol phosphate signalling may account for symptoms of manic depression [].; GO: 0004437 inositol or phosphatidylinositol phosphatase activity; PDB: 1IMF_A 1IMA_A 1IMB_A 1IMD_A 1IMC_A 1IME_A 1AWB_A 2HHM_B 2QFL_A 1INP_A ....
Probab=29.46 E-value=10 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.0
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.+.++|..|+--|..++..||.+|-
T Consensus 86 ~wviDPIDGT~nf~~g~p~~~i~ia 110 (270)
T PF00459_consen 86 TWVIDPIDGTRNFVRGLPEFAISIA 110 (270)
T ss_dssp EEEEEEEETHHHHHHTSSG-EEEEE
T ss_pred EEEecccccchhhhhhhhHHHHHHH
Confidence 5889999999999999999998884
No 57
>cd01638 CysQ CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).
Probab=29.09 E-value=19 Score=26.99 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=22.6
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
-|.++|..|+--|..++..||.++-
T Consensus 76 ~WviDPIDGT~Nfv~g~p~~~isia 100 (242)
T cd01638 76 FWLVDPLDGTREFIKGNGEFAVNIA 100 (242)
T ss_pred EEEEecccChHHHhcCCCCeEEEEE
Confidence 3789999999999999999998875
No 58
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=29.03 E-value=29 Score=22.63 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=13.5
Q ss_pred CceEeeecccceeeeHH
Q psy15097 23 GNVCFASTQYAMCFTLH 39 (106)
Q Consensus 23 GNV~FaSal~gw~Ftl~ 39 (106)
|+-...+..|||.|+++
T Consensus 61 ~~~~i~Cp~Hg~~Fdl~ 77 (105)
T TIGR02378 61 GELWVACPLHKRNFRLE 77 (105)
T ss_pred CcEEEECCcCCCEEEcC
Confidence 34457888999999986
No 59
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=28.97 E-value=26 Score=23.45 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=13.6
Q ss_pred ceEeeecccceeeeHHH
Q psy15097 24 NVCFASTQYAMCFTLHS 40 (106)
Q Consensus 24 NV~FaSal~gw~Ftl~s 40 (106)
...-.+-+|||.|.|++
T Consensus 65 ~~~V~CP~H~~~Fdl~T 81 (108)
T PRK09511 65 ELWVASPLKKQRFRLSD 81 (108)
T ss_pred eEEEECCCCCCEEECCC
Confidence 34578889999999973
No 60
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=27.21 E-value=72 Score=19.42 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhCCCCCHHHH
Q psy15097 38 LHSFASLYAQTSPTLNTQEF 57 (106)
Q Consensus 38 l~sFA~~Y~~k~~~~~~~~l 57 (106)
++.|.+.|++.+ |++++.+
T Consensus 44 ~rg~lr~Ya~~L-gld~~~l 62 (62)
T PF13413_consen 44 ARGYLRKYARFL-GLDPDEL 62 (62)
T ss_dssp HHHHHHHHHHHT-T--HHHH
T ss_pred HHHHHHHHHHHh-CcCcccC
Confidence 578888999988 8887754
No 61
>KOG3806|consensus
Probab=25.73 E-value=1.3e+02 Score=22.71 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=38.2
Q ss_pred ecCCCceEeeecccceeeeH---HHHHHHHHhhC--CCCCHHHHHHhhhccceecCC
Q psy15097 19 SPILGNVCFASTQYAMCFTL---HSFASLYAQTS--PTLNTQEFARRLWGDMYFNSK 70 (106)
Q Consensus 19 sP~~GNV~FaSal~gw~Ftl---~sFA~~Y~~k~--~~~~~~~l~k~LWGd~Y~~~k 70 (106)
++..+.++-=.+.+||-|-| +.-|+++-.+- ++|+=++|.+.| .+||+.-
T Consensus 81 d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaL--RyyY~kn 135 (177)
T KOG3806|consen 81 DESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRAL--RYYYDKN 135 (177)
T ss_pred CcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHH--HHHHhcC
Confidence 56777887777779999988 77888887753 468888999988 6777544
No 62
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=24.86 E-value=10 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCceEeeecccceeeeHHH
Q psy15097 22 LGNVCFASTQYAMCFTLHS 40 (106)
Q Consensus 22 ~GNV~FaSal~gw~Ftl~s 40 (106)
-|-++|+||.+||.+|=..
T Consensus 11 ~~~l~F~aatqg~f~~r~~ 29 (183)
T PF11874_consen 11 IAMLAFAAATQGWFLTRNK 29 (183)
T ss_pred HHHHHHHHHhcceeeecch
Confidence 4567899999999988643
No 63
>PLN02737 inositol monophosphatase family protein
Probab=24.72 E-value=25 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=23.0
Q ss_pred ceeeecCCCceEeeecccceeeeHH
Q psy15097 15 YKYLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 15 ~~~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.|.++|..|+.-|..++..||.+|-
T Consensus 153 ~WiIDPIDGT~NFv~G~P~faVsIA 177 (363)
T PLN02737 153 LWCIDPLDGTTNFAHGYPSFAVSVG 177 (363)
T ss_pred EEEEecccCHHHHHhCCCCeEEEEE
Confidence 4889999999999999999999884
No 64
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=24.35 E-value=33 Score=21.79 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=12.1
Q ss_pred EeeecccceeeeHH
Q psy15097 26 CFASTQYAMCFTLH 39 (106)
Q Consensus 26 ~FaSal~gw~Ftl~ 39 (106)
.+.+..|||.|+++
T Consensus 57 ~i~Cp~Hg~~fd~~ 70 (98)
T cd03528 57 VIECPLHGGRFDLR 70 (98)
T ss_pred EEEeCCcCCEEECC
Confidence 57788999999984
No 65
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=24.11 E-value=66 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.4
Q ss_pred eeecCCCceEeeecccceeeeHH
Q psy15097 17 YLSPILGNVCFASTQYAMCFTLH 39 (106)
Q Consensus 17 ~~sP~~GNV~FaSal~gw~Ftl~ 39 (106)
.+....|+.+-+|-+|+|-|+|+
T Consensus 55 ~i~~~~g~~~V~CPlH~~~f~L~ 77 (104)
T PF13806_consen 55 LIGDGNGEPCVACPLHKWRFDLR 77 (104)
T ss_dssp EEEECTTEEEEEETTTTEEEETT
T ss_pred EEccCCCCEEEECCCCCCeEECC
Confidence 34557888899999999999996
No 66
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=24.09 E-value=67 Score=24.29 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=20.8
Q ss_pred eee-eHHHHHHHHHhhCCCCCHHHHHHh
Q psy15097 34 MCF-TLHSFASLYAQTSPTLNTQEFARR 60 (106)
Q Consensus 34 w~F-tl~sFA~~Y~~k~~~~~~~~l~k~ 60 (106)
|+| +...|++.|.+.+ |++|.+..++
T Consensus 274 ~GF~d~s~Fsr~Fkk~~-G~sP~~yR~~ 300 (302)
T PRK09685 274 WGFSDSSHFSTAFKQRF-GVSPGEYRRK 300 (302)
T ss_pred hCCCCHHHHHHHHHHHH-CcCHHHHHhh
Confidence 444 4789999999999 8999887653
No 67
>PF15595 Imm31: Immunity protein 31
Probab=23.89 E-value=57 Score=22.26 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=36.3
Q ss_pred cccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccC--CCCCCchHHHHHHH
Q psy15097 30 TQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPV--NPSELPKMLDGLRK 91 (106)
Q Consensus 30 al~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~--~p~dlpkl~e~L~~ 91 (106)
+..|=+++-.++|+.|.++. . ..|+++.=|||+...|.-- +...++++.+.++.
T Consensus 34 g~egnGY~W~~l~~~~l~~~-~-------p~l~~~i~fDpEagmF~ays~~~eal~~l~~~i~~ 89 (107)
T PF15595_consen 34 GFEGNGYDWEALARVYLREN-A-------PELLEKIDFDPEAGMFCAYSEDKEALKKLAEIIKE 89 (107)
T ss_pred CCCCCCccHHHHHHHHHHHh-C-------hhHHHhcCcCCCCCEEEEecCCHHHHHHHHHHHHH
Confidence 35556778899999999876 1 3457888999999988743 33344444444443
No 68
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=23.20 E-value=34 Score=21.89 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=11.7
Q ss_pred EeeecccceeeeHH
Q psy15097 26 CFASTQYAMCFTLH 39 (106)
Q Consensus 26 ~FaSal~gw~Ftl~ 39 (106)
.+.+..|||.|+++
T Consensus 58 ~i~Cp~Hg~~Fdl~ 71 (98)
T cd03530 58 YVTCPLHNWVIDLE 71 (98)
T ss_pred EEECCCCCCEEECC
Confidence 45677999999996
No 69
>PF08971 GlgS: Glycogen synthesis protein; InterPro: IPR015065 Members of this protein are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them []. ; GO: 0005978 glycogen biosynthetic process; PDB: 1RRZ_A.
Probab=23.10 E-value=46 Score=21.27 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=17.8
Q ss_pred ceeeeHHHHHHHHHhhCCCCCHHHHHHhh
Q psy15097 33 AMCFTLHSFASLYAQTSPTLNTQEFARRL 61 (106)
Q Consensus 33 gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~L 61 (106)
+..|--.|||+|.+++- .|+..++.-+|
T Consensus 10 nfDFlAsS~ArMe~qgr-~vd~~~I~gnM 37 (66)
T PF08971_consen 10 NFDFLASSFARMEAQGR-KVDVDAITGNM 37 (66)
T ss_dssp HHHHHHHHHHHHHHHT-----HHHHHHH-
T ss_pred cchHHHHHHHHHHHcCC-CCCHHHHhccC
Confidence 45577799999999987 67777665544
No 70
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=23.05 E-value=28 Score=24.73 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=0.0
Q ss_pred ccceeeeHHHHHHHHHhh
Q psy15097 31 QYAMCFTLHSFASLYAQT 48 (106)
Q Consensus 31 l~gw~Ftl~sFA~~Y~~k 48 (106)
.|||||+-.+=|+-+-.+
T Consensus 95 ~yGWCF~s~sea~~~F~~ 112 (120)
T PF08027_consen 95 EYGWCFASNSEAEKYFKK 112 (120)
T ss_dssp ------------------
T ss_pred ceeeeeccccHHHHHHHH
Confidence 689999988877755544
No 71
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=22.78 E-value=39 Score=23.88 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=17.5
Q ss_pred CCCHHHHHHhhhccceecCCC
Q psy15097 51 TLNTQEFARRLWGDMYFNSKT 71 (106)
Q Consensus 51 ~~~~~~l~k~LWGd~Y~~~kt 71 (106)
+++-+.+.+|||.++|-.++.
T Consensus 64 ~MDL~tIe~RL~ng~Y~tp~~ 84 (119)
T cd05491 64 NMDLDTIEERLWNGYYATPKD 84 (119)
T ss_pred ccCHHHHHHHHhcCCCCCHHH
Confidence 689999999999988866554
No 72
>PF05174 CDRN: Cysteine-rich D. radiodurans N terminus; InterPro: IPR007847 This domain is found individually and at the N terminus of a number of multi-domain proteins, including several found in the bacterium Deinococcus radiodurans which is capable of surviving ionizing irradiation and other DNA-damaging assaults at doses that are lethal to all other organisms.
Probab=22.69 E-value=75 Score=19.15 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.3
Q ss_pred ceeeeHHHHHHHHHhhC
Q psy15097 33 AMCFTLHSFASLYAQTS 49 (106)
Q Consensus 33 gw~Ftl~sFA~~Y~~k~ 49 (106)
-|+|.|++|.++=..+-
T Consensus 2 ~~~~~leqfselrvrrn 18 (52)
T PF05174_consen 2 LFFFSLEQFSELRVRRN 18 (52)
T ss_pred CccccHHHHHHHHHhhc
Confidence 47899999999988775
No 73
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=22.08 E-value=96 Score=16.60 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.7
Q ss_pred HHHHhhCCCCCHHHHHHhh
Q psy15097 43 SLYAQTSPTLNTQEFARRL 61 (106)
Q Consensus 43 ~~Y~~k~~~~~~~~l~k~L 61 (106)
..|.+.. +++.++...+|
T Consensus 8 NrYV~eh-~ls~ee~~~RL 25 (28)
T PF12368_consen 8 NRYVKEH-GLSEEEVAERL 25 (28)
T ss_pred hhhHHhc-CCCHHHHHHHH
Confidence 4688887 89999988887
No 74
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=20.85 E-value=42 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=11.8
Q ss_pred EeeecccceeeeHH
Q psy15097 26 CFASTQYAMCFTLH 39 (106)
Q Consensus 26 ~FaSal~gw~Ftl~ 39 (106)
...+..|||.|+++
T Consensus 63 ~i~Cp~Hg~~Fdl~ 76 (103)
T cd03529 63 VVASPLYKQHFSLK 76 (103)
T ss_pred EEECCCCCCEEEcC
Confidence 56777999999985
No 75
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=20.66 E-value=41 Score=21.91 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=13.9
Q ss_pred CCCceEeeecccceeeeHHH
Q psy15097 21 ILGNVCFASTQYAMCFTLHS 40 (106)
Q Consensus 21 ~~GNV~FaSal~gw~Ftl~s 40 (106)
..|+. +.+..|||.|++++
T Consensus 54 ~~g~~-i~CP~Hg~~Fdl~~ 72 (108)
T cd03474 54 FDGGV-LTCRAHLWQFDADT 72 (108)
T ss_pred ccCCE-EEeCCcCCEEECCC
Confidence 34443 55779999999975
No 76
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=20.45 E-value=43 Score=21.29 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=11.6
Q ss_pred EeeecccceeeeHH
Q psy15097 26 CFASTQYAMCFTLH 39 (106)
Q Consensus 26 ~FaSal~gw~Ftl~ 39 (106)
.+.+..|||.|+++
T Consensus 56 ~i~CP~Hg~~Fdl~ 69 (95)
T cd03478 56 RIRCPWHGACFNLR 69 (95)
T ss_pred EEEcCCCCCEEECC
Confidence 46678999999984
No 77
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=20.37 E-value=42 Score=23.19 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=12.3
Q ss_pred EeeecccceeeeHH
Q psy15097 26 CFASTQYAMCFTLH 39 (106)
Q Consensus 26 ~FaSal~gw~Ftl~ 39 (106)
.+.+..|||.|+++
T Consensus 73 ~i~Cp~Hgw~Fdl~ 86 (136)
T cd03548 73 TITCWYHGWTYRLD 86 (136)
T ss_pred EEEecCCccEEeCC
Confidence 68888999999984
No 78
>KOG0066|consensus
Probab=20.32 E-value=2.2e+02 Score=25.35 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=41.0
Q ss_pred CCCHHHHHHhhhccceecCCCcccccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097 51 TLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQ 103 (106)
Q Consensus 51 ~~~~~~l~k~LWGd~Y~~~ktkk~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~ 103 (106)
+++-++-.+.| |.+=.-+-...+..++.+-+++.+.+|-.|+-.-|.|.++|
T Consensus 678 Nlpyq~ARK~L-G~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD 729 (807)
T KOG0066|consen 678 NLPYQEARKQL-GTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD 729 (807)
T ss_pred CCChHHHHHHh-hhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence 55555544444 66666666777888899999999999999999999998886
No 79
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=20.32 E-value=93 Score=21.01 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=23.3
Q ss_pred eecCCCcccccCCCCCCchHHHHHHHHHhh
Q psy15097 66 YFNSKTKIVEPVNPSELPKMLDGLRKVNKS 95 (106)
Q Consensus 66 Y~~~ktkk~~p~~p~dlpkl~e~L~~l~~~ 95 (106)
++|++||.+.-..|..=.-+..|++||...
T Consensus 41 ~id~~~k~IyELKPnNPr~ik~G~kQl~~Y 70 (89)
T PF15650_consen 41 FIDFETKIIYELKPNNPRAIKRGLKQLENY 70 (89)
T ss_pred cccCCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 789999878766666666788899998753
No 80
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=20.16 E-value=97 Score=19.94 Aligned_cols=24 Identities=13% Similarity=0.426 Sum_probs=19.5
Q ss_pred eHHHHHHHHHhhCCCCCHHHHHHhh
Q psy15097 37 TLHSFASLYAQTSPTLNTQEFARRL 61 (106)
Q Consensus 37 tl~sFA~~Y~~k~~~~~~~~l~k~L 61 (106)
+...|.+.+.+.+ |+.|.++.+++
T Consensus 84 ~~s~f~~~Fk~~~-G~tP~~~r~~~ 107 (107)
T PRK10219 84 SQQTFSRVFRRQF-DRTPSDYRHRL 107 (107)
T ss_pred CHHHHHHHHHHHH-CcCHHHHHhcC
Confidence 4588999998888 89998887653
Done!