RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15097
         (106 letters)



>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
           HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
           b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
           1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
           1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
           2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
          Length = 842

 Score = 60.4 bits (146), Expect = 2e-12
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 17  YLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEP 76
            + P  G V F S  +   FT+  FA+ YA+    ++  +   RLWGD +FN KTK    
Sbjct: 201 QVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFG-VDKAKMMDRLWGDSFFNPKTKKWTN 259

Query: 77  VNPSELPKML 86
            +     K L
Sbjct: 260 KDTDAEGKPL 269



 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 65  MYFNSKTKI---VEPVNPSELPKMLDGLRKVNKSYPLL 99
           M F+    +   VE  N ++LPK+++GL++++KS P +
Sbjct: 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV 518


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 26/97 (26%)

Query: 7   DLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMY 66
           DLY   + Y     ++G++   S +     TL               TQ      W +  
Sbjct: 175 DLY---QTYH---VLVGDLIKFSAE-----TLSELIRTTLDAEKVF-TQGLNILEWLE-- 220

Query: 67  FNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQ 103
                      NPS  P   D L  +  S PL+ ++Q
Sbjct: 221 -----------NPSNTPD-KDYLLSIPISCPLIGVIQ 245



 Score = 28.1 bits (62), Expect = 0.52
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 28/90 (31%)

Query: 38  LHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN---PSELPKM--------- 85
           +H+ A   A+     +T     +     Y  ++     P +    S L +          
Sbjct: 101 IHALA---AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157

Query: 86  ------------LDGLRKVNKSY-PLLTLL 102
                        + LR + ++Y  L+  L
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187


>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
           translation, structural GEN NPPSFA; 2.50A {Thermus
           thermophilus}
          Length = 337

 Score = 26.4 bits (59), Expect = 1.7
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 12/50 (24%)

Query: 54  TQEFARRLWGDMYFNSKT----KIVEPVNPSELPKM--LDGLRKVNKSYP 97
           T+E ARR      FN          + +   E P++  +DG  K++KS  
Sbjct: 158 TREIARR------FNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLG 201


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 3.7
 Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 1/16 (6%)

Query: 38 LHSFASLYA-QTSPTL 52
          L +   LYA  ++P L
Sbjct: 25 LQASLKLYADDSAPAL 40


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 4.8
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 36  FTLHSFASLYAQTSPTLNTQEFAR---RLWGDMYFNSKTKIVEPVNPSELPKMLDGLRK 91
           F +    +   Q  P++ T+ +     RL+ D    +K  +       +L + L  LR 
Sbjct: 93  FLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149


>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
          oxidoreductase, monooxygenase, sterol biosynthesis,
          lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
          {Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
          2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
          Length = 450

 Score = 24.5 bits (54), Expect = 7.4
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 2  LASQFDLYSGEEDYKYLSPILGN 24
             + ++ S  E Y ++ P+ G 
Sbjct: 63 FLPRNEVLSPREVYSFMVPVFGE 85


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,507,195
Number of extensions: 68485
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 10
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)