RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15097
         (106 letters)



>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
           (G) domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 341

 Score = 61.7 bits (149), Expect = 3e-13
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 17  YLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEP 76
            + P  G V F S  +   FT+  FA+ YA+    ++  +   RLWGD +FN KTK    
Sbjct: 199 QVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFG-VDKAKMMDRLWGDSFFNPKTKKWTN 257

Query: 77  VNPSELPKML 86
            +     K L
Sbjct: 258 KDTDAEGKPL 267


>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 79

 Score = 36.0 bits (83), Expect = 8e-05
 Identities = 11/26 (42%), Positives = 21/26 (80%)

Query: 74 VEPVNPSELPKMLDGLRKVNKSYPLL 99
          VE  N ++LPK+++GL++++KS P +
Sbjct: 12 VEVKNANDLPKLVEGLKRLSKSDPCV 37


>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
          thermophilus [TaxId: 274]}
          Length = 75

 Score = 32.8 bits (75), Expect = 0.001
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 74 VEPVNPSELPKMLDGLRKVNKSYP 97
          +EP   ++  K+   L ++ +  P
Sbjct: 10 IEPKTKADQEKLSQALARLAEESP 33


>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
           thermophilus, EF-G-2 [TaxId: 274]}
          Length = 77

 Score = 27.9 bits (62), Expect = 0.081
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 74  VEPVNPSELPKMLDGLRKVNKSYPLLT 100
           + P   ++  ++ + LRK+ +  P L 
Sbjct: 10  LHPKGRTDEARLGEALRKLLEEDPSLK 36


>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit
           (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 22.5 bits (48), Expect = 9.8
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 65  MYFNSKTKIVEPVNPSELPKM 85
           M FN++T ++   +   LP +
Sbjct: 96  MTFNNETSVMPCEDDHHLPTV 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,628
Number of extensions: 14125
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 10
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)