BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15098
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YV7|A Chain A, Crystal Structure Of The Clic Homolog From Drosophila
Melanogaster
Length = 260
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 38/48 (79%), Gaps = 10/48 (20%)
Query: 31 ASTIDGRRKGACLFCQEYFMDL----------LKVTTVDMQKPPPDFR 68
ASTIDGRRKGACLFCQEYFMDL LKVTTVDMQKPPPDFR
Sbjct: 29 ASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFR 76
>pdb|2PER|A Chain A, Crystal Structure Of Human Chloride Intracellular
Channel Protein 2
Length = 267
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C FCQ FM L VTTVDM + P + +DL
Sbjct: 43 DGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDL 84
>pdb|2R4V|A Chain A, Structure Of Human Clic2, Crystal Form A
pdb|2R5G|A Chain A, Structure Of Human Clic2, Crystal Form B
Length = 247
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C FCQ FM L VTTVDM + P + +DL
Sbjct: 23 DGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDL 64
>pdb|2YV9|A Chain A, Crystal Structure Of The Clic Homologue Exc-4 From C.
Elegans
pdb|2YV9|B Chain B, Crystal Structure Of The Clic Homologue Exc-4 From C.
Elegans
Length = 291
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 31 ASTIDGRRKGACLFCQEYFMDL 52
AS ID RR GA LFCQE++M+L
Sbjct: 26 ASGIDARRIGADLFCQEFWMEL 47
>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
Length = 261
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 21 LPTNKLKER---------LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPP 65
+P N LKE + + DG G C F Q FM L VTTVD+++ P
Sbjct: 5 MPLNGLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPA 64
Query: 66 DFRDL 70
D ++L
Sbjct: 65 DLQNL 69
>pdb|2AHE|A Chain A, Crystal Structure Of A Soluble Form Of Clic4.
Intercellular Chloride Ion Channel
Length = 267
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 21 LPTNKLKER---------LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPP 65
+P N LKE + + DG G C F Q FM L VTTVD+++ P
Sbjct: 5 MPLNGLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPA 64
Query: 66 DFRDL 70
D ++L
Sbjct: 65 DLQNL 69
>pdb|3FY7|A Chain A, Crystal Structure Of Homo Sapiens Clic3
pdb|3FY7|B Chain B, Crystal Structure Of Homo Sapiens Clic3
pdb|3KJY|A Chain A, Crystal Structure Of Reduced Homo Sapiens Clic3
pdb|3KJY|B Chain B, Crystal Structure Of Reduced Homo Sapiens Clic3
Length = 250
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 24 NKLKERLASTIDGRRKGACLFCQEYFMDLL------KVTTVDMQKPPPDFRD 69
KL+ + ++ DG G C CQ FM LL +TTVD ++ P +D
Sbjct: 24 TKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKD 75
>pdb|2AAM|A Chain A, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|B Chain B, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|C Chain C, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|D Chain D, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|E Chain E, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|F Chain F, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
Length = 309
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 2 DQGQLTGLECYWDIKYLDYLPT-----NKLKERLASTIDGRRKGACLFCQEYFMD 51
D GQL W ++ L YL T N+ K RL I RKG + +Y D
Sbjct: 197 DDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDD 251
>pdb|3A9R|A Chain A, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|B Chain B, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|C Chain C, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9S|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose
Isomerase Complex With Glycerol
pdb|3A9S|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose
Isomerase Complex With Glycerol
pdb|3A9S|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose
Isomerase Complex With Glycerol
pdb|3A9T|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose
Isomerase Complex With L-Fucitol
pdb|3A9T|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose
Isomerase Complex With L-Fucitol
pdb|3A9T|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose
Isomerase Complex With L-Fucitol
Length = 595
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 14 DIKYLDYLPTNKLKERLASTIDGRRKGACLFCQEYFMDLLK 54
D +Y+ LP K + TIDGRRKG +E M++ K
Sbjct: 4 DPRYVGNLP----KIGIRPTIDGRRKGVRESLEETTMNMAK 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,874,968
Number of Sequences: 62578
Number of extensions: 98939
Number of successful extensions: 129
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 11
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)