BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15098
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96NY7|CLIC6_HUMAN Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6
PE=2 SV=3
Length = 704
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 26 LKERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
+K+ L + DG G C F Q FM L VTTVD+++ P D ++L
Sbjct: 471 IKKYLRAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNL 521
>sp|O15247|CLIC2_HUMAN Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2
PE=1 SV=3
Length = 247
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C FCQ FM L VTTVDM + P + +DL
Sbjct: 23 DGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDL 64
>sp|Q8WQA4|EXC4_CAEEL Chloride intracellular channel exc-4 OS=Caenorhabditis elegans
GN=exc-4 PE=1 SV=2
Length = 290
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 31 ASTIDGRRKGACLFCQEYFMDL 52
AS ID RR GA LFCQE++M+L
Sbjct: 25 ASGIDARRIGADLFCQEFWMEL 46
>sp|Q8BXK9|CLIC5_MOUSE Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5
PE=1 SV=1
Length = 251
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 30 LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
+ + IDG G C F Q FM L VTTVD+++ P D +L
Sbjct: 20 VKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNL 66
>sp|Q9EPT8|CLIC5_RAT Chloride intracellular channel protein 5 OS=Rattus norvegicus
GN=Clic5 PE=1 SV=1
Length = 251
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 30 LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
+ + IDG G C F Q FM L VTTVD+++ P D +L
Sbjct: 20 VKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNL 66
>sp|Q811Q2|CLIC6_RAT Chloride intracellular channel protein 6 OS=Rattus norvegicus
GN=Clic6 PE=1 SV=1
Length = 612
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C F Q FM L VTTVD+++ P D ++L
Sbjct: 388 DGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNL 429
>sp|Q9N2G5|CLIC6_RABIT Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus
GN=CLIC6 PE=1 SV=1
Length = 637
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C F Q FM L VTTVD+++ P D ++L
Sbjct: 413 DGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNL 454
>sp|Q8BHB9|CLIC6_MOUSE Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6
PE=2 SV=1
Length = 596
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C F Q FM L VTTVD+++ P D ++L
Sbjct: 372 DGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNL 413
>sp|P35526|CLIC5_BOVIN Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5
PE=2 SV=1
Length = 437
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 34 IDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
IDG G C F Q FM L VTTVD+++ P D +L
Sbjct: 209 IDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNL 251
>sp|Q9XSA7|CLIC4_BOVIN Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4
PE=2 SV=3
Length = 253
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 21 LPTNKLKERLASTI---------DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPP 65
+P N LKE I DG G C F Q FM L VTTVD+++ P
Sbjct: 5 MPLNGLKEEDKEPIIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPA 64
Query: 66 DFRDL 70
D ++L
Sbjct: 65 DLQNL 69
>sp|Q5M883|CLIC2_RAT Chloride intracellular channel protein 2 OS=Rattus norvegicus
GN=Clic2 PE=2 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 35 DGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
DG G C FCQ FM L VTT+D + P + +DL
Sbjct: 23 DGESIGNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDL 64
>sp|Q9Y696|CLIC4_HUMAN Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4
PE=1 SV=4
Length = 253
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 21 LPTNKLKER---------LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPP 65
+P N LKE + + DG G C F Q FM L VTTVD+++ P
Sbjct: 5 MPLNGLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPA 64
Query: 66 DFRDL 70
D ++L
Sbjct: 65 DLQNL 69
>sp|Q9QYB1|CLIC4_MOUSE Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4
PE=1 SV=3
Length = 253
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 21 LPTNKLKER---------LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPP 65
+P N LKE + + DG G C F Q FM L VTTVD+++ P
Sbjct: 5 MPLNGLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPA 64
Query: 66 DFRDL 70
D ++L
Sbjct: 65 DLQNL 69
>sp|Q9NZA1|CLIC5_HUMAN Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5
PE=1 SV=3
Length = 410
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 34 IDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70
IDG G C F Q FM L VTTVD+++ P D +L
Sbjct: 183 IDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNL 225
>sp|P27409|POLG_FCVF9 Genome polyprotein OS=Feline calicivirus (strain F9) GN=ORF1 PE=3
SV=1
Length = 1763
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 38 RKGACLFCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQ 79
++GA +C+EY +D + M+ PPP F ++ L +T Q
Sbjct: 632 KRGAECWCKEYVLDPKGLQHQSMKAPPPTFLNIDSLAQTMKQ 673
>sp|Q8LPW2|RT13_SOYBN Small ribosomal subunit protein S13, mitochondrial OS=Glycine max
GN=RSP13 PE=3 SV=1
Length = 148
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 2 DQGQLTGLECYWDIKYLDYLP-------TNKLKERLASTIDGRR 38
D G+L G++CY I+++D LP TN R T G R
Sbjct: 105 DVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR 148
>sp|Q5R957|CLIC4_PONAB Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4
PE=2 SV=3
Length = 253
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 21 LPTNKLKER---------LASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPP 65
+P N LKE + + DG G C F Q FM L V+TVD+++ P
Sbjct: 5 MPLNGLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVSTVDLKRKPA 64
Query: 66 DFRDL 70
D ++L
Sbjct: 65 DLQNL 69
>sp|Q0U9D6|DUS3_PHANO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=DUS3 PE=3 SV=2
Length = 739
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 12 YWDIKYLDYLPTNKLKERLASTIDGRRKGACLFCQEYFMDLLKVTTVDMQKPPPDFR 68
Y + L++LP N +++R GR L E+++D +K++ + + K PP F+
Sbjct: 669 YVPVGLLEHLPPN-IQDR-PPRFRGRNDLETLMASEHYLDWIKLSEMFLGKAPPTFK 723
>sp|Q9Y7Z4|COG3_SCHPO Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cog3 PE=3 SV=1
Length = 735
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 29 RLASTIDGRRKGACLFCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLN 81
R + DG RKG +F LK T + PPPDF K+ QLN
Sbjct: 159 RFSEIADGIRKGLTIFAP------LKELTRVFRHPPPDFAGKVSFKEHITQLN 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,984,134
Number of Sequences: 539616
Number of extensions: 1235277
Number of successful extensions: 2091
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2082
Number of HSP's gapped (non-prelim): 20
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)