Query psy15098
Match_columns 92
No_of_seqs 73 out of 75
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 20:32:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1422|consensus 99.8 1.8E-19 3.8E-24 139.3 5.0 52 25-76 3-61 (221)
2 cd03061 GST_N_CLIC GST_N famil 99.6 5.9E-15 1.3E-19 99.2 5.2 52 25-76 5-62 (91)
3 TIGR00862 O-ClC intracellular 99.3 3.4E-12 7.3E-17 96.8 5.0 52 25-76 2-59 (236)
4 PLN02378 glutathione S-transfe 98.8 3E-09 6.5E-14 76.5 3.3 52 25-76 2-60 (213)
5 PLN02817 glutathione dehydroge 98.6 1E-08 2.2E-13 78.4 1.8 56 21-76 51-113 (265)
6 cd03060 GST_N_Omega_like GST_N 97.7 4.6E-05 9.9E-10 46.2 3.3 36 40-75 7-48 (71)
7 PF13417 GST_N_3: Glutathione 97.4 0.00018 4E-09 44.2 3.4 37 40-76 5-47 (75)
8 PF13409 GST_N_2: Glutathione 97.4 0.00014 2.9E-09 44.7 2.7 35 41-75 1-45 (70)
9 cd03059 GST_N_SspA GST_N famil 97.2 0.0004 8.7E-09 41.3 2.9 37 40-76 7-49 (73)
10 cd03052 GST_N_GDAP1 GST_N fami 97.0 0.00081 1.8E-08 41.8 2.9 36 41-76 8-52 (73)
11 PRK09481 sspA stringent starva 96.8 0.0012 2.5E-08 47.1 2.7 36 41-76 18-59 (211)
12 cd03053 GST_N_Phi GST_N family 96.7 0.0022 4.8E-08 38.6 3.0 37 40-76 8-53 (76)
13 cd03055 GST_N_Omega GST_N fami 96.6 0.0023 5E-08 40.7 3.2 37 39-75 24-66 (89)
14 cd03051 GST_N_GTT2_like GST_N 96.6 0.0028 6.1E-08 37.2 3.0 36 40-75 7-51 (74)
15 cd03058 GST_N_Tau GST_N family 96.5 0.0028 6.1E-08 38.3 2.9 40 41-80 8-55 (74)
16 cd03056 GST_N_4 GST_N family, 96.5 0.0034 7.4E-08 37.0 3.1 39 41-79 8-56 (73)
17 KOG0406|consensus 96.5 0.0021 4.5E-08 50.2 2.6 35 40-74 16-56 (231)
18 cd03038 GST_N_etherase_LigE GS 96.5 0.0039 8.4E-08 38.7 3.3 49 26-75 1-57 (84)
19 cd03049 GST_N_3 GST_N family, 96.3 0.0042 9.2E-08 37.3 2.9 36 41-76 8-51 (73)
20 cd03045 GST_N_Delta_Epsilon GS 95.8 0.011 2.4E-07 35.1 2.9 36 40-75 7-51 (74)
21 cd03043 GST_N_1 GST_N family, 95.7 0.014 3E-07 35.9 3.2 38 39-76 7-52 (73)
22 cd03044 GST_N_EF1Bgamma GST_N 95.6 0.015 3.2E-07 35.5 2.9 36 41-76 8-51 (75)
23 cd00570 GST_N_family Glutathio 95.6 0.018 3.8E-07 31.9 3.0 35 41-75 8-49 (71)
24 cd03041 GST_N_2GST_N GST_N fam 95.2 0.014 3.1E-07 35.9 2.0 36 40-75 8-50 (77)
25 cd02066 GRX_family Glutaredoxi 95.0 0.042 9.1E-07 31.2 3.5 32 41-72 9-47 (72)
26 cd03037 GST_N_GRX2 GST_N famil 94.9 0.027 5.8E-07 33.7 2.5 34 41-75 8-47 (71)
27 PRK10638 glutaredoxin 3; Provi 94.6 0.031 6.8E-07 35.0 2.5 41 25-73 3-50 (83)
28 cd03027 GRX_DEP Glutaredoxin ( 94.6 0.048 1E-06 33.1 3.2 43 40-83 9-58 (73)
29 TIGR00365 monothiol glutaredox 94.5 0.07 1.5E-06 35.2 4.0 60 21-83 9-74 (97)
30 cd03042 GST_N_Zeta GST_N famil 94.0 0.072 1.6E-06 31.3 2.9 35 41-75 8-51 (73)
31 cd03048 GST_N_Ure2p_like GST_N 93.9 0.066 1.4E-06 32.7 2.8 34 43-76 10-52 (81)
32 PRK15113 glutathione S-transfe 93.2 0.09 2E-06 37.5 2.9 35 41-75 15-58 (214)
33 cd03050 GST_N_Theta GST_N fami 93.1 0.13 2.8E-06 31.1 3.0 36 41-76 8-52 (76)
34 cd03028 GRX_PICOT_like Glutare 93.0 0.19 4E-06 32.3 3.9 58 20-80 4-67 (90)
35 TIGR02190 GlrX-dom Glutaredoxi 92.8 0.15 3.3E-06 31.7 3.2 34 23-64 7-44 (79)
36 cd03418 GRX_GRXb_1_3_like Glut 92.4 0.21 4.5E-06 29.7 3.3 30 41-70 9-42 (75)
37 TIGR02194 GlrX_NrdH Glutaredox 91.6 0.19 4.1E-06 30.6 2.5 31 40-70 7-41 (72)
38 COG0625 Gst Glutathione S-tran 91.6 0.2 4.3E-06 35.4 3.0 37 39-76 7-51 (211)
39 cd02976 NrdH NrdH-redoxin (Nrd 91.5 0.24 5.3E-06 28.3 2.7 33 41-73 9-48 (73)
40 TIGR02196 GlrX_YruB Glutaredox 91.1 0.24 5.1E-06 28.3 2.4 27 41-67 9-39 (74)
41 TIGR02189 GlrX-like_plant Glut 90.8 0.35 7.6E-06 32.0 3.3 38 20-65 4-45 (99)
42 cd03046 GST_N_GTT1_like GST_N 90.8 0.29 6.2E-06 29.0 2.7 34 43-76 9-51 (76)
43 cd03040 GST_N_mPGES2 GST_N fam 90.6 0.14 3E-06 30.9 1.2 32 41-74 9-46 (77)
44 TIGR02181 GRX_bact Glutaredoxi 89.8 0.27 5.9E-06 29.9 2.0 32 40-71 7-42 (79)
45 PRK10824 glutaredoxin-4; Provi 89.2 0.62 1.4E-05 32.5 3.7 60 21-83 12-77 (115)
46 TIGR01262 maiA maleylacetoacet 88.9 0.4 8.7E-06 33.4 2.6 37 40-76 6-52 (210)
47 PHA03050 glutaredoxin; Provisi 87.9 0.69 1.5E-05 31.4 3.2 34 21-62 10-50 (108)
48 cd03054 GST_N_Metaxin GST_N fa 87.9 0.99 2.2E-05 26.9 3.5 33 27-60 2-40 (72)
49 PLN02473 glutathione S-transfe 87.9 0.6 1.3E-05 32.8 2.9 35 41-75 10-53 (214)
50 PRK10357 putative glutathione 87.6 0.51 1.1E-05 32.9 2.4 36 41-76 8-49 (202)
51 PRK10329 glutaredoxin-like pro 87.3 0.62 1.3E-05 29.8 2.5 31 41-71 10-44 (81)
52 PRK13972 GSH-dependent disulfi 86.7 0.75 1.6E-05 32.7 2.9 34 42-75 9-51 (215)
53 TIGR02182 GRXB Glutaredoxin, G 86.3 0.77 1.7E-05 33.0 2.8 36 40-76 6-47 (209)
54 cd03047 GST_N_2 GST_N family, 86.0 0.95 2.1E-05 27.1 2.7 35 41-75 8-51 (73)
55 COG0695 GrxC Glutaredoxin and 85.9 2.9 6.4E-05 26.7 5.1 52 25-84 2-61 (80)
56 PF04134 DUF393: Protein of un 85.2 0.66 1.4E-05 30.2 1.9 26 40-65 5-36 (114)
57 cd03076 GST_N_Pi GST_N family, 85.1 0.51 1.1E-05 28.7 1.2 35 41-75 9-49 (73)
58 cd03039 GST_N_Sigma_like GST_N 85.1 0.55 1.2E-05 28.0 1.4 36 41-76 8-50 (72)
59 cd03029 GRX_hybridPRX5 Glutare 84.7 1.4 3E-05 26.5 3.0 25 40-64 9-37 (72)
60 PF13728 TraF: F plasmid trans 84.1 0.87 1.9E-05 34.2 2.3 25 39-63 129-161 (215)
61 cd03080 GST_N_Metaxin_like GST 83.5 1.9 4.2E-05 26.1 3.3 22 39-60 14-41 (75)
62 PF00462 Glutaredoxin: Glutare 83.4 0.82 1.8E-05 26.7 1.6 31 40-70 7-41 (60)
63 TIGR01617 arsC_related transcr 82.8 1.2 2.7E-05 29.7 2.5 31 40-70 7-41 (117)
64 cd03036 ArsC_like Arsenate Red 81.7 1.3 2.9E-05 29.6 2.3 31 40-70 7-41 (111)
65 cd03057 GST_N_Beta GST_N famil 81.2 2.1 4.5E-05 25.7 2.8 32 45-76 11-51 (77)
66 PLN02395 glutathione S-transfe 79.0 2.3 5E-05 29.8 2.9 33 44-76 12-53 (215)
67 TIGR02739 TraF type-F conjugat 79.0 1.6 3.6E-05 34.3 2.3 25 40-64 160-192 (256)
68 cd02973 TRX_GRX_like Thioredox 78.8 3.8 8.2E-05 23.9 3.4 32 41-72 10-50 (67)
69 cd02977 ArsC_family Arsenate R 78.8 1.9 4E-05 28.1 2.2 27 40-66 7-37 (105)
70 PRK10542 glutathionine S-trans 76.5 2.6 5.7E-05 29.1 2.6 32 45-76 11-52 (201)
71 PTZ00062 glutaredoxin; Provisi 76.2 5 0.00011 30.4 4.1 60 21-83 110-175 (204)
72 PRK13703 conjugal pilus assemb 74.6 2.5 5.5E-05 33.1 2.3 26 39-64 152-185 (248)
73 PRK01655 spxA transcriptional 74.2 3.1 6.6E-05 28.9 2.4 27 40-66 8-38 (131)
74 PRK10387 glutaredoxin 2; Provi 73.7 3.7 8E-05 28.6 2.7 35 40-75 7-47 (210)
75 TIGR02200 GlrX_actino Glutared 73.4 2.8 6.1E-05 24.4 1.8 26 40-65 8-37 (77)
76 COG2999 GrxB Glutaredoxin 2 [P 72.7 1.4 3.1E-05 34.8 0.5 13 40-52 7-19 (215)
77 PRK11752 putative S-transferas 72.2 4.2 9.1E-05 30.6 2.9 35 42-76 52-101 (264)
78 cd03032 ArsC_Spx Arsenate Redu 72.1 4.2 9.1E-05 27.2 2.6 27 40-66 8-38 (115)
79 PF05768 DUF836: Glutaredoxin- 70.0 4.6 0.0001 25.4 2.3 32 40-71 8-47 (81)
80 cd01659 TRX_superfamily Thiore 69.6 12 0.00026 18.8 3.5 29 40-68 7-44 (69)
81 KOG1752|consensus 68.2 9.4 0.0002 26.3 3.7 44 19-70 9-58 (104)
82 TIGR02180 GRX_euk Glutaredoxin 67.7 6.4 0.00014 23.4 2.5 23 40-62 7-35 (84)
83 PRK11657 dsbG disulfide isomer 67.2 2.6 5.6E-05 32.2 0.9 12 41-52 128-139 (251)
84 cd03419 GRX_GRXh_1_2_like Glut 64.5 8.6 0.00019 22.9 2.6 13 40-52 8-20 (82)
85 PRK11200 grxA glutaredoxin 1; 64.0 8.7 0.00019 23.8 2.7 24 41-64 10-42 (85)
86 PRK10877 protein disulfide iso 63.4 3.4 7.4E-05 31.2 0.9 12 41-52 118-129 (232)
87 PF02798 GST_N: Glutathione S- 61.6 8.5 0.00018 23.6 2.3 32 44-75 11-52 (76)
88 PF14447 Prok-RING_4: Prokaryo 60.6 2.7 5.9E-05 26.9 -0.1 21 29-49 29-49 (55)
89 PRK09381 trxA thioredoxin; Pro 60.3 18 0.00038 22.8 3.7 38 41-78 32-79 (109)
90 PF13192 Thioredoxin_3: Thiore 59.3 11 0.00024 23.2 2.5 29 42-71 10-46 (76)
91 TIGR00411 redox_disulf_1 small 57.7 12 0.00026 22.0 2.5 32 40-71 9-50 (82)
92 TIGR02183 GRXA Glutaredoxin, G 57.3 12 0.00026 23.7 2.5 24 41-64 9-41 (86)
93 PRK13344 spxA transcriptional 56.7 11 0.00024 26.3 2.5 29 39-67 7-39 (132)
94 cd03031 GRX_GRX_like Glutaredo 55.4 22 0.00047 25.7 3.8 42 26-69 2-47 (147)
95 KOG0867|consensus 54.6 11 0.00023 28.0 2.2 33 43-75 12-53 (226)
96 PF04423 Rad50_zn_hook: Rad50 54.0 3.6 7.8E-05 24.6 -0.3 10 40-49 21-30 (54)
97 cd02966 TlpA_like_family TlpA- 53.9 14 0.0003 21.8 2.3 35 41-75 30-76 (116)
98 cd03026 AhpF_NTD_C TRX-GRX-lik 53.5 23 0.00051 22.8 3.5 48 23-76 11-67 (89)
99 cd02975 PfPDO_like_N Pyrococcu 49.6 49 0.0011 21.8 4.6 49 23-76 20-77 (113)
100 PRK12759 bifunctional gluaredo 49.1 19 0.00041 29.5 3.0 25 41-65 11-39 (410)
101 PRK12559 transcriptional regul 48.8 16 0.00034 25.5 2.2 31 39-69 7-41 (131)
102 PF13098 Thioredoxin_2: Thiore 47.8 8.4 0.00018 24.2 0.7 23 41-63 16-51 (112)
103 PHA03066 Hypothetical protein; 46.7 3.5 7.5E-05 29.7 -1.4 17 17-33 19-35 (110)
104 cd02949 TRX_NTR TRX domain, no 46.3 34 0.00073 21.3 3.3 38 40-77 23-70 (97)
105 cd03020 DsbA_DsbC_DsbG DsbA fa 45.0 10 0.00022 27.0 0.7 12 41-52 88-99 (197)
106 PF13166 AAA_13: AAA domain 42.6 6.1 0.00013 33.2 -0.8 21 27-47 242-263 (712)
107 PRK14563 ribosome modulation f 42.4 8.9 0.00019 24.6 0.1 17 31-47 18-34 (55)
108 KOG4420|consensus 41.2 8.1 0.00017 32.2 -0.2 32 45-76 38-78 (325)
109 PF14353 CpXC: CpXC protein 40.6 11 0.00025 25.4 0.5 24 41-64 40-63 (128)
110 PF06129 Chordopox_G3: Chordop 39.6 4.9 0.00011 28.7 -1.5 17 17-33 18-34 (109)
111 PF04957 RMF: Ribosome modulat 39.3 9.6 0.00021 24.2 -0.1 15 32-46 19-33 (55)
112 TIGR02740 TraF-like TraF-like 39.1 26 0.00056 27.2 2.3 25 40-64 176-208 (271)
113 cd02947 TRX_family TRX family; 39.0 68 0.0015 18.0 3.6 39 41-79 21-68 (93)
114 PHA02973 hypothetical protein; 38.5 7.4 0.00016 27.7 -0.7 26 17-43 17-42 (102)
115 PHA02691 hypothetical protein; 36.6 5.7 0.00012 28.6 -1.6 17 17-33 19-35 (110)
116 cd03035 ArsC_Yffb Arsenate Red 35.9 35 0.00076 22.8 2.2 27 40-66 7-37 (105)
117 KOG1538|consensus 34.8 14 0.0003 34.6 0.2 11 37-47 1064-1074(1081)
118 PF11294 DUF3095: Protein of u 34.4 15 0.00033 30.8 0.3 28 5-37 171-201 (373)
119 COG4338 Uncharacterized protei 33.6 11 0.00025 24.1 -0.4 11 41-51 14-24 (54)
120 cd03023 DsbA_Com1_like DsbA fa 32.5 20 0.00044 23.0 0.6 12 41-52 16-27 (154)
121 PF03550 LolB: Outer membrane 31.3 58 0.0013 23.0 2.9 25 3-27 107-136 (157)
122 TIGR01068 thioredoxin thioredo 31.3 56 0.0012 19.3 2.4 35 40-74 24-68 (101)
123 COG4680 Uncharacterized protei 31.1 31 0.00067 24.5 1.4 27 62-88 36-65 (98)
124 cd03001 PDI_a_P5 PDIa family, 30.6 53 0.0011 19.9 2.3 36 41-76 29-74 (103)
125 cd02998 PDI_a_ERp38 PDIa famil 30.6 1E+02 0.0022 18.5 3.6 38 41-78 29-79 (105)
126 cd02984 TRX_PICOT TRX domain, 30.2 96 0.0021 18.7 3.4 39 40-78 24-72 (97)
127 PF14354 Lar_restr_allev: Rest 29.8 21 0.00045 21.2 0.4 14 38-51 2-15 (61)
128 PF13913 zf-C2HC_2: zinc-finge 28.9 13 0.00029 19.5 -0.6 12 39-50 2-13 (25)
129 PF13462 Thioredoxin_4: Thiore 28.8 27 0.00059 22.9 0.8 12 41-52 23-34 (162)
130 TIGR01295 PedC_BrcD bacterioci 28.1 47 0.001 22.5 1.9 24 41-64 34-65 (122)
131 PF02083 Urotensin_II: Urotens 27.2 17 0.00038 17.1 -0.3 7 8-14 3-9 (12)
132 COG4502 5'(3')-deoxyribonucleo 27.1 59 0.0013 25.2 2.4 58 13-72 41-111 (180)
133 PF00085 Thioredoxin: Thioredo 26.6 1.3E+02 0.0028 17.8 3.5 38 41-78 28-75 (103)
134 PF03960 ArsC: ArsC family; I 26.3 71 0.0015 20.9 2.4 31 39-69 3-37 (110)
135 COG5188 PRP9 Splicing factor 3 26.1 26 0.00057 30.4 0.4 12 41-52 240-251 (470)
136 PRK10996 thioredoxin 2; Provis 26.1 1.1E+02 0.0025 20.8 3.5 40 40-79 62-111 (139)
137 cd02972 DsbA_family DsbA famil 25.8 28 0.00061 20.1 0.4 12 41-52 8-19 (98)
138 cd02961 PDI_a_family Protein D 24.5 73 0.0016 18.4 2.0 31 41-71 26-68 (101)
139 COG5254 ARV1 Predicted membran 24.4 48 0.001 26.7 1.5 22 28-49 13-34 (239)
140 cd02964 TryX_like_family Trypa 24.4 91 0.002 20.5 2.7 34 41-74 28-74 (132)
141 PRK13728 conjugal transfer pro 24.3 59 0.0013 24.4 1.9 23 41-63 80-110 (181)
142 cd03033 ArsC_15kD Arsenate Red 24.0 66 0.0014 21.9 2.0 29 39-67 7-39 (113)
143 cd02994 PDI_a_TMX PDIa family, 24.0 1E+02 0.0022 19.0 2.7 31 41-71 27-68 (101)
144 PF02591 DUF164: Putative zinc 22.8 22 0.00047 21.3 -0.5 13 37-49 44-56 (56)
145 cd03003 PDI_a_ERdj5_N PDIa fam 22.8 1.6E+02 0.0036 18.1 3.5 35 40-74 28-72 (101)
146 KOG2324|consensus 22.5 30 0.00066 30.1 0.1 29 37-65 245-292 (457)
147 cd02951 SoxW SoxW family; SoxW 21.9 91 0.002 20.1 2.3 23 41-63 25-60 (125)
148 TIGR02738 TrbB type-F conjugat 20.8 74 0.0016 22.7 1.8 24 41-64 61-92 (153)
149 TIGR00014 arsC arsenate reduct 20.7 95 0.0021 20.8 2.3 28 39-66 6-37 (114)
150 smart00734 ZnF_Rad18 Rad18-lik 20.6 28 0.00062 18.5 -0.3 10 40-49 2-11 (26)
151 PF12599 DUF3768: Protein of u 20.4 79 0.0017 21.6 1.8 14 6-19 44-57 (84)
152 cd02956 ybbN ybbN protein fami 20.4 1.3E+02 0.0029 18.1 2.7 36 40-75 22-67 (96)
153 TIGR00696 wecB_tagA_cpsF bacte 20.2 75 0.0016 23.3 1.8 20 53-72 136-155 (177)
No 1
>KOG1422|consensus
Probab=99.78 E-value=1.8e-19 Score=139.34 Aligned_cols=52 Identities=38% Similarity=0.613 Sum_probs=50.4
Q ss_pred CeeEEEeecCCC-ccccCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 25 KLKERLASTIDG-RRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 25 ~i~lvvKAgsDg-~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.|+++||||+++ +++|+||||||+||+| |+|||||++|||+||++++|+|++
T Consensus 3 ~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~ 61 (221)
T KOG1422|consen 3 EIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKP 61 (221)
T ss_pred ceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCC
Confidence 589999999999 9999999999999999 999999999999999999999986
No 2
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.55 E-value=5.9e-15 Score=99.21 Aligned_cols=52 Identities=38% Similarity=0.676 Sum_probs=48.2
Q ss_pred CeeEEEeecCCCccccCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 25 KLKERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 25 ~i~lvvKAgsDg~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.+|+++||+++..++|.||||||++|+| |.++.||+.++|+||++++|.|+.
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~v 62 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQP 62 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCC
Confidence 5899999988776799999999999999 999999999999999999999874
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.29 E-value=3.4e-12 Score=96.80 Aligned_cols=52 Identities=33% Similarity=0.542 Sum_probs=49.3
Q ss_pred CeeEEEeecCCCccccCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 25 KLKERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 25 ~i~lvvKAgsDg~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.||++||||+|++++|.||||||++|+| |++..||+.++|++|+++||.|+.
T Consensus 2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~v 59 (236)
T TIGR00862 2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHP 59 (236)
T ss_pred ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCC
Confidence 5899999999999999999999999999 999999999999999999999764
No 4
>PLN02378 glutathione S-transferase DHAR1
Probab=98.81 E-value=3e-09 Score=76.49 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=46.1
Q ss_pred CeeEEEeecCCC-ccccCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 25 KLKERLASTIDG-RRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 25 ~i~lvvKAgsDg-~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.||++|||+-+. ...|.||||||+.|.| +.+..||+..+|++|+++||.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~V 60 (213)
T PLN02378 2 ALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKV 60 (213)
T ss_pred ceehhhhccCCCCCCCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCC
Confidence 589999986544 6689999999999999 999999999999999999999874
No 5
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=98.65 E-value=1e-08 Score=78.35 Aligned_cols=56 Identities=21% Similarity=0.391 Sum_probs=49.5
Q ss_pred ccCCCeeEEEeecCCC-ccccCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 21 LPTNKLKERLASTIDG-RRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 21 ~~~~~i~lvvKAgsDg-~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
-+.+|+|++|||+... .++|.||||||+.+.| |++..||+.++|++|++++|.|+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkV 113 (265)
T PLN02817 51 TMSSPLEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKV 113 (265)
T ss_pred CCCccHHHHHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCC
Confidence 4567899999987655 5699999999999998 899999999999999999999875
No 6
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.70 E-value=4.6e-05 Score=46.16 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=32.5
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKK 75 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~ 75 (92)
..||+|+|+.+.| |....||+..++++|++++|.++
T Consensus 7 ~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~ 48 (71)
T cd03060 7 RRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGT 48 (71)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCC
Confidence 5699999999999 88889999989999999999875
No 7
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.43 E-value=0.00018 Score=44.15 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.9
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
..||||||+.|.| ++++.|+...++++|++++|.++.
T Consensus 5 ~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~v 47 (75)
T PF13417_consen 5 PGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKV 47 (75)
T ss_dssp TTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBS
T ss_pred CCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccc
Confidence 4699999999999 999999999999999999998864
No 8
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.41 E-value=0.00014 Score=44.73 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCchhHHHhhhe------eeeeEeeC----CCCChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDM----QKPPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~----krKP~~f~dL~p~g~ 75 (92)
.||||||+.++| +.+..|+. ..++++|.+++|.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~ 45 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGK 45 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-S
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeE
Confidence 499999999999 88888854 567799999999876
No 9
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.19 E-value=0.0004 Score=41.27 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=32.8
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
..||+|+|+.+.| |....||...++++|++++|.++.
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~v 49 (73)
T cd03059 7 PDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTV 49 (73)
T ss_pred CCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCC
Confidence 4699999999999 888889999999999999998863
No 10
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.97 E-value=0.00081 Score=41.77 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=30.6
Q ss_pred CCchhHHHhhhe------eeeeEeeC---CCCChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDM---QKPPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~---krKP~~f~dL~p~g~~ 76 (92)
.||+|||+.+.| |.+..||+ ..++++|++++|.++.
T Consensus 8 ~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~v 52 (73)
T cd03052 8 QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEV 52 (73)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCC
Confidence 589999999999 77788887 4678999999998764
No 11
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.76 E-value=0.0012 Score=47.15 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.||+|+|+.|.| |.+..||+..+|++|+++||.|+.
T Consensus 18 ~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~V 59 (211)
T PRK09481 18 TDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSV 59 (211)
T ss_pred CChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCC
Confidence 589999999999 899999999999999999999874
No 12
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.65 E-value=0.0022 Score=38.56 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=30.9
Q ss_pred cCCchhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCcc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKKT 76 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~~ 76 (92)
..||+|+|+.|+| |+...+|+. .++++|++++|.++.
T Consensus 8 ~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~v 53 (76)
T cd03053 8 AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQI 53 (76)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCC
Confidence 3589999999999 777778875 567899999998774
No 13
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=96.63 E-value=0.0023 Score=40.72 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=32.2
Q ss_pred ccCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCc
Q psy15098 39 KGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKK 75 (92)
Q Consensus 39 lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~ 75 (92)
...||+|+|+.+.| |+...+|+..++++|++++|.++
T Consensus 24 ~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~ 66 (89)
T cd03055 24 MRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGK 66 (89)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCC
Confidence 45699999999999 88888898888899999998865
No 14
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=96.57 E-value=0.0028 Score=37.16 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=29.4
Q ss_pred cCCchhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKK 75 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~ 75 (92)
..||+|+|+.+.| |++..+|.. .++++|++++|.++
T Consensus 7 ~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~ 51 (74)
T cd03051 7 PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGT 51 (74)
T ss_pred CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCC
Confidence 3699999999999 777778764 36788999998865
No 15
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.52 E-value=0.0028 Score=38.29 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=33.4
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChhHHhhccC--CcceEEE
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLL--KKTFWQL 80 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~--g~~~~~~ 80 (92)
.||+|+|+.+.| |+.+.+|...++++|++++|. +-+..+.
T Consensus 8 ~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 8 ASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLH 55 (74)
T ss_pred CCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE
Confidence 599999999998 888888988889999999994 5555554
No 16
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.50 E-value=0.0034 Score=36.95 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=30.9
Q ss_pred CCchhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCc-ceEE
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKK-TFWQ 79 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~-~~~~ 79 (92)
.||+|+|+.+.| |+...||+. .++++|++++|.++ +..+
T Consensus 8 ~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03056 8 LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLE 56 (73)
T ss_pred CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEE
Confidence 599999999999 777778764 47899999998876 3443
No 17
>KOG0406|consensus
Probab=96.48 E-value=0.0021 Score=50.22 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=31.8
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCC
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLK 74 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g 74 (92)
-.|||+||+-|.| +.+--.|+.+||+||.+.||-.
T Consensus 16 w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~h 56 (231)
T KOG0406|consen 16 WFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVH 56 (231)
T ss_pred ecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhcccc
Confidence 4699999999999 9999999999999999999543
No 18
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.47 E-value=0.0039 Score=38.74 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=35.3
Q ss_pred eeEEEeecCCCccccCCchhHHHhhhe------eeeeEeeCCCCChhHH--hhccCCc
Q psy15098 26 LKERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFR--DLYLLKK 75 (92)
Q Consensus 26 i~lvvKAgsDg~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~--dL~p~g~ 75 (92)
|+++..++.++. .+.||||+|+.+.| |++..+|+..+++... +++|.++
T Consensus 1 ~~~~~~~~~~~~-~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~ 57 (84)
T cd03038 1 ITLYDLAGKDPV-RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYT 57 (84)
T ss_pred CeeEeccCCCCC-CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCce
Confidence 467878877777 88999999999999 7777888765543222 4555444
No 19
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.33 E-value=0.0042 Score=37.27 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=30.4
Q ss_pred CCchhHHHhhhe--------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL--------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL--------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.||+|+|+.+.| |.+..+|...++++|++++|.++.
T Consensus 8 ~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~v 51 (73)
T cd03049 8 TSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKI 51 (73)
T ss_pred CCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCC
Confidence 589999999987 677788888889999999987664
No 20
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=95.81 E-value=0.011 Score=35.14 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=29.4
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCC---CChhHHhhccCCc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQK---PPPDFRDLYLLKK 75 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~kr---KP~~f~dL~p~g~ 75 (92)
-.||+|+|+.+.| |.+..||+.. +.++|++.+|.++
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~ 51 (74)
T cd03045 7 PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHT 51 (74)
T ss_pred CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCC
Confidence 3699999999988 7778888754 4689999999875
No 21
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.71 E-value=0.014 Score=35.87 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=30.7
Q ss_pred ccCCchhHHHhhhe------eeeeEeeCCC--CChhHHhhccCCcc
Q psy15098 39 KGACLFCQEYFMDL------LKVTTVDMQK--PPPDFRDLYLLKKT 76 (92)
Q Consensus 39 lG~CPFcQRlFMiL------f~VTTVD~kr--KP~~f~dL~p~g~~ 76 (92)
.+.+|+|||+.|+| |+...+|+.. ++++|++++|.++.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~v 52 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKV 52 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcC
Confidence 46799999999999 7777788754 56899999987763
No 22
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.58 E-value=0.015 Score=35.49 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCchhHHHhhhe------eeeeEeeCC--CCChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQ--KPPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~k--rKP~~f~dL~p~g~~ 76 (92)
.||+|+|+.++| |+...||+. .++++|++++|.++.
T Consensus 8 ~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~v 51 (75)
T cd03044 8 GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKV 51 (75)
T ss_pred CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCC
Confidence 589999999999 777788876 478999999998763
No 23
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.57 E-value=0.018 Score=31.94 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.1
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChh-HHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPD-FRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~-f~dL~p~g~ 75 (92)
.||+|+++.++| |++..++....++. +++.+|.++
T Consensus 8 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd00570 8 GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGK 49 (71)
T ss_pred CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCC
Confidence 399999999999 77777776665554 777666544
No 24
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.23 E-value=0.014 Score=35.95 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=26.1
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCC-CChhHHhhccCCc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQK-PPPDFRDLYLLKK 75 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~kr-KP~~f~dL~p~g~ 75 (92)
..||||+|+-+.| |++.-|+... ++++|.+++|.++
T Consensus 8 ~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~ 50 (77)
T cd03041 8 EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQ 50 (77)
T ss_pred CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCc
Confidence 3699999999999 5555444332 3568999998766
No 25
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.04 E-value=0.042 Score=31.20 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=24.4
Q ss_pred CCchhHHHhhhe----eeeeEeeCCCCCh---hHHhhcc
Q psy15098 41 ACLFCQEYFMDL----LKVTTVDMQKPPP---DFRDLYL 72 (92)
Q Consensus 41 ~CPFcQRlFMiL----f~VTTVD~krKP~---~f~dL~p 72 (92)
.||+|+++..+| .....+|+...++ +++++++
T Consensus 9 ~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~ 47 (72)
T cd02066 9 TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG 47 (72)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC
Confidence 399999999999 7777888888774 4444444
No 26
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.91 E-value=0.027 Score=33.70 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~ 75 (92)
.||||+|+.|.| |....+|.. +++...+.+|.++
T Consensus 8 ~~p~~~rvr~~L~~~gl~~~~~~~~~~-~~~~~~~~~~~~~ 47 (71)
T cd03037 8 HCPFCVKARMIAGLKNIPVEQIILQND-DEATPIRMIGAKQ 47 (71)
T ss_pred CCcHhHHHHHHHHHcCCCeEEEECCCC-chHHHHHhcCCCc
Confidence 599999999999 555555543 2344555666554
No 27
>PRK10638 glutaredoxin 3; Provisional
Probab=94.65 E-value=0.031 Score=34.97 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=27.4
Q ss_pred CeeEEEeecCCCccccCCchhHHHhhhe------eeeeEeeCCC-CChhHHhhccC
Q psy15098 25 KLKERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQK-PPPDFRDLYLL 73 (92)
Q Consensus 25 ~i~lvvKAgsDg~~lG~CPFcQRlFMiL------f~VTTVD~kr-KP~~f~dL~p~ 73 (92)
+|++|-++ .||||+++-..| |.+..||... .++++.++.+.
T Consensus 3 ~v~ly~~~--------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~ 50 (83)
T PRK10638 3 NVEIYTKA--------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR 50 (83)
T ss_pred cEEEEECC--------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC
Confidence 46666654 499999999999 5554454443 35677777654
No 28
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.61 E-value=0.048 Score=33.14 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=32.7
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCCh---hHHhhccCCcceEEEeee
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPP---DFRDLYLLKKTFWQLNFN 83 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~---~f~dL~p~g~~~~~~~~~ 83 (92)
-.||+|+++-..| ...+.+|+..-|+ .++++.+. .++.|+=+|
T Consensus 9 ~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~ 58 (73)
T cd03027 9 LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFN 58 (73)
T ss_pred CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEEC
Confidence 3699999999999 7788889988775 57776654 566776444
No 29
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.53 E-value=0.07 Score=35.20 Aligned_cols=60 Identities=17% Similarity=0.084 Sum_probs=41.3
Q ss_pred ccCCCeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCChhHHhhcc--CCcceEEEeee
Q psy15098 21 LPTNKLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPPPDFRDLYL--LKKTFWQLNFN 83 (92)
Q Consensus 21 ~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL~p--~g~~~~~~~~~ 83 (92)
+-.++|.++.|..+ ..-.||||+|+--+| .....+|+...|+....+.. +..++=|+-+|
T Consensus 9 i~~~~Vvvf~kg~~---~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 9 IKENPVVLYMKGTP---QFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred hccCCEEEEEccCC---CCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 45688999977653 356799999999999 66677888777765555432 34455555433
No 30
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=93.99 E-value=0.072 Score=31.31 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCchhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~ 75 (92)
.||+|+|+.+.| |+...+|+. .++++|++++|.++
T Consensus 8 ~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~ 51 (73)
T cd03042 8 RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGL 51 (73)
T ss_pred CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCC
Confidence 367777777777 778888874 57889999999876
No 31
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=93.94 E-value=0.066 Score=32.72 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=28.5
Q ss_pred chhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCcc
Q psy15098 43 LFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKKT 76 (92)
Q Consensus 43 PFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~~ 76 (92)
|+|+|+.+.| |++..+|+. .++++|++++|.++.
T Consensus 10 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~v 52 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRI 52 (81)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCC
Confidence 9999999999 777788864 577899999998764
No 32
>PRK15113 glutathione S-transferase; Provisional
Probab=93.23 E-value=0.09 Score=37.55 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=30.0
Q ss_pred CCchhHHHhhhe------eeeeEeeCCC---CChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQK---PPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~kr---KP~~f~dL~p~g~ 75 (92)
.||+|+|+.+.| |+...||+.+ ++++|+++||.|+
T Consensus 15 ~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~ 58 (214)
T PRK15113 15 FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRR 58 (214)
T ss_pred CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCC
Confidence 499999999998 8888888765 5689999999877
No 33
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=93.11 E-value=0.13 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=28.3
Q ss_pred CCchhHHHhhhe------eeeeEeeCCC---CChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQK---PPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~kr---KP~~f~dL~p~g~~ 76 (92)
.+|+|+++.+.| |++..||+.. +.++|++++|.++.
T Consensus 8 ~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~v 52 (76)
T cd03050 8 MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKV 52 (76)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCC
Confidence 478999998888 8888888754 35789999987763
No 34
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.02 E-value=0.19 Score=32.33 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=38.7
Q ss_pred cccCCCeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCChhHHhhcc--CCcceEEE
Q psy15098 20 YLPTNKLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPPPDFRDLYL--LKKTFWQL 80 (92)
Q Consensus 20 ~~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL~p--~g~~~~~~ 80 (92)
.+-.|++.++.|..++ .-.||+|+++--+| ...+.+|+...|+....+.. +..++=|+
T Consensus 4 ~i~~~~vvvf~k~~~~---~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 4 LIKENPVVLFMKGTPE---EPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred hhccCCEEEEEcCCCC---CCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 3456899999886544 44799999988888 67777787766654443322 33444444
No 35
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.80 E-value=0.15 Score=31.71 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCCeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCC
Q psy15098 23 TNKLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPP 64 (92)
Q Consensus 23 ~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP 64 (92)
.++|+|+.+. .||+|+++-+.| +..+.+|+...+
T Consensus 7 ~~~V~ly~~~--------~Cp~C~~ak~~L~~~gi~y~~idi~~~~ 44 (79)
T TIGR02190 7 PESVVVFTKP--------GCPFCAKAKATLKEKGYDFEEIPLGNDA 44 (79)
T ss_pred CCCEEEEECC--------CCHhHHHHHHHHHHcCCCcEEEECCCCh
Confidence 5778888764 599999999999 666677776543
No 36
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.38 E-value=0.21 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCchhHHHhhhe----eeeeEeeCCCCChhHHhh
Q psy15098 41 ACLFCQEYFMDL----LKVTTVDMQKPPPDFRDL 70 (92)
Q Consensus 41 ~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL 70 (92)
.||+|+++--+| ...+.+|+...|+..+++
T Consensus 9 ~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~ 42 (75)
T cd03418 9 NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEM 42 (75)
T ss_pred CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 499999999998 777778888777776665
No 37
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.64 E-value=0.19 Score=30.62 Aligned_cols=31 Identities=13% Similarity=0.403 Sum_probs=25.4
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChhHHhh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPDFRDL 70 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL 70 (92)
-.||+|+++...| ...+.+|+...|+.+..+
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~ 41 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYV 41 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH
Confidence 4699999999999 777788988888766655
No 38
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.2 Score=35.39 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=32.1
Q ss_pred ccCCchhHHHhhhe------eeeeEeeCC--CCChhHHhhccCCcc
Q psy15098 39 KGACLFCQEYFMDL------LKVTTVDMQ--KPPPDFRDLYLLKKT 76 (92)
Q Consensus 39 lG~CPFcQRlFMiL------f~VTTVD~k--rKP~~f~dL~p~g~~ 76 (92)
.+. |+|+|+.+.| |....||+. .++++|..+||.|+.
T Consensus 7 ~~s-p~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkV 51 (211)
T COG0625 7 PTS-PYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKV 51 (211)
T ss_pred CCC-cchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCC
Confidence 344 9999999999 888999998 599999999999874
No 39
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.45 E-value=0.24 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCchhHHHhhhe----eeeeEeeCCCCC---hhHHhhccC
Q psy15098 41 ACLFCQEYFMDL----LKVTTVDMQKPP---PDFRDLYLL 73 (92)
Q Consensus 41 ~CPFcQRlFMiL----f~VTTVD~krKP---~~f~dL~p~ 73 (92)
.||.|+++.++| +..+.+|....+ +.++++++.
T Consensus 9 ~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 48 (73)
T cd02976 9 DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY 48 (73)
T ss_pred CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC
Confidence 599999999988 666667765543 467776653
No 40
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=91.08 E-value=0.24 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCchhHHHhhhe----eeeeEeeCCCCChhH
Q psy15098 41 ACLFCQEYFMDL----LKVTTVDMQKPPPDF 67 (92)
Q Consensus 41 ~CPFcQRlFMiL----f~VTTVD~krKP~~f 67 (92)
.||+|+++...| ..+..+|...-|+..
T Consensus 9 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~ 39 (74)
T TIGR02196 9 WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR 39 (74)
T ss_pred CChhHHHHHHHHHHCCCeEEEEeccCCHHHH
Confidence 599999998888 778888988776653
No 41
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.81 E-value=0.35 Score=31.97 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.1
Q ss_pred cccCCCeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCCh
Q psy15098 20 YLPTNKLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPPP 65 (92)
Q Consensus 20 ~~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP~ 65 (92)
.+..++|++|-|. .||||+|+-.+| ...+.+|+..-|+
T Consensus 4 ~i~~~~Vvvysk~--------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~ 45 (99)
T TIGR02189 4 MVSEKAVVIFSRS--------SCCMCHVVKRLLLTLGVNPAVHEIDKEPA 45 (99)
T ss_pred hhccCCEEEEECC--------CCHHHHHHHHHHHHcCCCCEEEEcCCCcc
Confidence 3456889999874 499999999999 4446777776665
No 42
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=90.79 E-value=0.29 Score=29.02 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=27.2
Q ss_pred chhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCcc
Q psy15098 43 LFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKKT 76 (92)
Q Consensus 43 PFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~~ 76 (92)
+.|+|+.++| |.+..||.. .++++|++++|.++.
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~v 51 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKV 51 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCC
Confidence 4578888888 888888874 678999999998763
No 43
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.63 E-value=0.14 Score=30.89 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCC
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLK 74 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g 74 (92)
.||||+++-+.| |.+..+|...+++ + +++|.+
T Consensus 9 ~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~-~-~~~~~~ 46 (77)
T cd03040 9 TCPFCCKVRAFLDYHGIPYEVVEVNPVSRKE-I-KWSSYK 46 (77)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCchhHHH-H-HHhCCC
Confidence 489999999999 6666666544433 3 345543
No 44
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=89.81 E-value=0.27 Score=29.92 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=26.3
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChhHHhhc
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL~ 71 (92)
-.||+|.++--+| ...+.+|+...|++++++.
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~ 42 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMM 42 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHH
Confidence 4699999999999 7778888888888776653
No 45
>PRK10824 glutaredoxin-4; Provisional
Probab=89.15 E-value=0.62 Score=32.54 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=38.6
Q ss_pred ccCCCeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCChhHHhhc--cCCcceEEEeee
Q psy15098 21 LPTNKLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPPPDFRDLY--LLKKTFWQLNFN 83 (92)
Q Consensus 21 ~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL~--p~g~~~~~~~~~ 83 (92)
+-.|+|.++.|.+.+ .-.||||.|+--+| ...+.+|+..-|+....+- -+..|+=|+-+|
T Consensus 12 I~~~~Vvvf~Kg~~~---~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 12 IAENPILLYMKGSPK---LPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred HhcCCEEEEECCCCC---CCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 457899999775332 45799999999998 4556677776665332221 244566555443
No 46
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=88.88 E-value=0.4 Score=33.40 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=29.5
Q ss_pred cCCchhHHHhhhe------eeeeEeeCC----CCChhHHhhccCCcc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQ----KPPPDFRDLYLLKKT 76 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~k----rKP~~f~dL~p~g~~ 76 (92)
..+|+|+|+.++| |++..||+. .+|++|++++|.++.
T Consensus 6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~v 52 (210)
T TIGR01262 6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLV 52 (210)
T ss_pred CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcC
Confidence 3589999999999 888888862 357889999987764
No 47
>PHA03050 glutaredoxin; Provisional
Probab=87.95 E-value=0.69 Score=31.40 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=26.2
Q ss_pred ccCCCeeEEEeecCCCccccCCchhHHHhhhe--e-----eeeEeeCCC
Q psy15098 21 LPTNKLKERLASTIDGRRKGACLFCQEYFMDL--L-----KVTTVDMQK 62 (92)
Q Consensus 21 ~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL--f-----~VTTVD~kr 62 (92)
+-.++|++|-+.+ ||||.|+-..| . ..+.+|++.
T Consensus 10 i~~~~V~vys~~~--------CPyC~~ak~~L~~~~i~~~~~~~i~i~~ 50 (108)
T PHA03050 10 LANNKVTIFVKFT--------CPFCRNALDILNKFSFKRGAYEIVDIKE 50 (108)
T ss_pred hccCCEEEEECCC--------ChHHHHHHHHHHHcCCCcCCcEEEECCC
Confidence 4567888887664 99999999999 3 456778775
No 48
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=87.87 E-value=0.99 Score=26.93 Aligned_cols=33 Identities=9% Similarity=-0.181 Sum_probs=22.3
Q ss_pred eEEEeecCCCccccCCchhHHHhhhe------eeeeEeeC
Q psy15098 27 KERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDM 60 (92)
Q Consensus 27 ~lvvKAgsDg~~lG~CPFcQRlFMiL------f~VTTVD~ 60 (92)
+|+.-.+ +....-.||+|+++.+.| |.+..+|.
T Consensus 2 ~L~~~~~-~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~ 40 (72)
T cd03054 2 ELYQWGR-AFGLPSLSPECLKVETYLRMAGIPYEVVFSSN 40 (72)
T ss_pred EEEEeCC-CCCCCCCCHHHHHHHHHHHhCCCceEEEecCC
Confidence 3444333 333456899999999999 66666665
No 49
>PLN02473 glutathione S-transferase
Probab=87.85 E-value=0.6 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCchhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~ 75 (92)
.+|+|+|+.++| |++..||.. .+++++.++||-|+
T Consensus 10 ~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~ 53 (214)
T PLN02473 10 KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQ 53 (214)
T ss_pred CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCC
Confidence 478999999988 788888876 46677778899876
No 50
>PRK10357 putative glutathione S-transferase; Provisional
Probab=87.60 E-value=0.51 Score=32.89 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=29.4
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.||+++|+.|+| |....++...+++.+.+++|-++.
T Consensus 8 ~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~v 49 (202)
T PRK10357 8 TSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKV 49 (202)
T ss_pred CCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCC
Confidence 489999998888 776778887888889998887653
No 51
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.27 E-value=0.62 Score=29.81 Aligned_cols=31 Identities=13% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCchhHHHhhhe----eeeeEeeCCCCChhHHhhc
Q psy15098 41 ACLFCQEYFMDL----LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 41 ~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL~ 71 (92)
.||+|+++--.| ...+.+|+...|+....+.
T Consensus 10 ~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~ 44 (81)
T PRK10329 10 DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLR 44 (81)
T ss_pred CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 599999998888 7777889888887655443
No 52
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=86.68 E-value=0.75 Score=32.67 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=27.2
Q ss_pred CchhHHHhhhe------eeeeEeeCCCC---ChhHHhhccCCc
Q psy15098 42 CLFCQEYFMDL------LKVTTVDMQKP---PPDFRDLYLLKK 75 (92)
Q Consensus 42 CPFcQRlFMiL------f~VTTVD~krK---P~~f~dL~p~g~ 75 (92)
.|+|+|+.+.| |....||+... +++|+++||-|+
T Consensus 9 ~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gk 51 (215)
T PRK13972 9 TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNK 51 (215)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCC
Confidence 37899988888 77777887543 678999999987
No 53
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=86.32 E-value=0.77 Score=33.04 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=23.7
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
..||||+|+.|+| |.+..++.. .+....+++|.++.
T Consensus 6 ~~sp~~~kvr~~L~~~gl~~e~~~~~~~-~~~~~~~~np~g~v 47 (209)
T TIGR02182 6 DHCPFCVRARMIFGLKNIPVEKHVLLND-DEETPIRMIGAKQV 47 (209)
T ss_pred CCCChHHHHHHHHHHcCCCeEEEECCCC-cchhHHHhcCCCCc
Confidence 4699999999999 444333322 22345788887653
No 54
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=86.04 E-value=0.95 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.0
Q ss_pred CCchhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~ 75 (92)
..|+|+|+.+.| |.++.+|.. .++++|++++|.++
T Consensus 8 ~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~ 51 (73)
T cd03047 8 SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGR 51 (73)
T ss_pred CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCC
Confidence 468899999998 777777753 34678999998775
No 55
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=2.9 Score=26.68 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=33.3
Q ss_pred CeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCC----hhHHhhccCCcceEEEeeee
Q psy15098 25 KLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPP----PDFRDLYLLKKTFWQLNFNV 84 (92)
Q Consensus 25 ~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP----~~f~dL~p~g~~~~~~~~~~ 84 (92)
.+++|.+++ ||+|.+.=-.| +....+|+..-+ ++..+..-+..++=|+-.|-
T Consensus 2 ~v~iyt~~~--------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 2 NVTIYTKPG--------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred CEEEEECCC--------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 466777765 99999999999 566666666666 23333332445665655543
No 56
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.16 E-value=0.66 Score=30.16 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=20.6
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCCh
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPP 65 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~ 65 (92)
|+||||.+.--.+ -.+.++|+...++
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~ 36 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSEPD 36 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCChhh
Confidence 7899999998777 5688899955443
No 57
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=85.13 E-value=0.51 Score=28.67 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=27.5
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~ 75 (92)
.|+.|.++.++| |....||....++++++++|.++
T Consensus 9 ~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~ 49 (73)
T cd03076 9 VRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQ 49 (73)
T ss_pred CcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCC
Confidence 378999999988 77778877656668889998654
No 58
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=85.05 E-value=0.55 Score=27.96 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=25.3
Q ss_pred CCchhHHHhhhe------eeeeEeeCCCCC-hhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL------LKVTTVDMQKPP-PDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL------f~VTTVD~krKP-~~f~dL~p~g~~ 76 (92)
.|++|+++-|.| |....+|....+ +.|.+++|.++.
T Consensus 8 ~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~v 50 (72)
T cd03039 8 IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQL 50 (72)
T ss_pred CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCC
Confidence 478999999999 666667764333 237778877653
No 59
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=84.75 E-value=1.4 Score=26.50 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=19.1
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCC
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPP 64 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP 64 (92)
-.||+|.++-..| ...+.+|+...+
T Consensus 9 ~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~ 37 (72)
T cd03029 9 PGCPFCARAKAALQENGISYEEIPLGKDI 37 (72)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCCh
Confidence 3599999999999 556667776555
No 60
>PF13728 TraF: F plasmid transfer operon protein
Probab=84.13 E-value=0.87 Score=34.23 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.7
Q ss_pred ccCCchhHHHhhhe--------eeeeEeeCCCC
Q psy15098 39 KGACLFCQEYFMDL--------LKVTTVDMQKP 63 (92)
Q Consensus 39 lG~CPFcQRlFMiL--------f~VTTVD~krK 63 (92)
.|+||+||+.--+| +.|..|+++-.
T Consensus 129 ~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~ 161 (215)
T PF13728_consen 129 RSDCPYCQQQAPILQQFADKYGFSVIPVSLDGR 161 (215)
T ss_pred cCCCchhHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 36799999999999 99999999854
No 61
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=83.45 E-value=1.9 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=16.6
Q ss_pred ccCCchhHHHhhhe------eeeeEeeC
Q psy15098 39 KGACLFCQEYFMDL------LKVTTVDM 60 (92)
Q Consensus 39 lG~CPFcQRlFMiL------f~VTTVD~ 60 (92)
...||||+|+.+.| |++..+++
T Consensus 14 ~~~sp~~~~v~~~L~~~gi~~~~~~~~~ 41 (75)
T cd03080 14 PSLSPFCLKVETFLRMAGIPYENKFGGL 41 (75)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEeecCc
Confidence 45799999999998 55555554
No 62
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=83.42 E-value=0.82 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=24.5
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChhHHhh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPDFRDL 70 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL 70 (92)
-.||+|+++-..| +..+.+|+..-++..+.+
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l 41 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREEL 41 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHH
Confidence 4699999999999 777888888777555544
No 63
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=82.81 E-value=1.2 Score=29.74 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=25.3
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChhHHhh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPDFRDL 70 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL 70 (92)
-.||+|+++.-.| ..++.+|+...|....++
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el 41 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREEL 41 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHH
Confidence 4699999999999 888999998877655443
No 64
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=81.73 E-value=1.3 Score=29.58 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=24.9
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChhHHhh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPDFRDL 70 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL 70 (92)
-.||+|.+..-.| ...+.+|+...|....++
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el 41 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEEL 41 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHH
Confidence 4699999999999 888999998877554333
No 65
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=81.20 E-value=2.1 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.4
Q ss_pred hHHHhhhe------eeeeEeeCCC---CChhHHhhccCCcc
Q psy15098 45 CQEYFMDL------LKVTTVDMQK---PPPDFRDLYLLKKT 76 (92)
Q Consensus 45 cQRlFMiL------f~VTTVD~kr---KP~~f~dL~p~g~~ 76 (92)
|+++.+.| |++..+|... ++++|++++|.++.
T Consensus 11 ~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~v 51 (77)
T cd03057 11 SLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQV 51 (77)
T ss_pred hHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCC
Confidence 67777777 7777777754 58999999998763
No 66
>PLN02395 glutathione S-transferase
Probab=78.97 E-value=2.3 Score=29.80 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=26.2
Q ss_pred hhHHHhhhe------eeeeEeeCC---CCChhHHhhccCCcc
Q psy15098 44 FCQEYFMDL------LKVTTVDMQ---KPPPDFRDLYLLKKT 76 (92)
Q Consensus 44 FcQRlFMiL------f~VTTVD~k---rKP~~f~dL~p~g~~ 76 (92)
.++|+.++| +....||.. .++++|+++||-|+.
T Consensus 12 ~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~v 53 (215)
T PLN02395 12 SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVV 53 (215)
T ss_pred cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCC
Confidence 379988888 777777764 678899999998873
No 67
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=78.96 E-value=1.6 Score=34.26 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=22.3
Q ss_pred cCCchhHHHhhhe--------eeeeEeeCCCCC
Q psy15098 40 GACLFCQEYFMDL--------LKVTTVDMQKPP 64 (92)
Q Consensus 40 G~CPFcQRlFMiL--------f~VTTVD~krKP 64 (92)
|+||+||+.-.+| +.|-.|+++..+
T Consensus 160 ~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~ 192 (256)
T TIGR02739 160 GKSPISQKMAPVIQAFAKEYGISVIPISVDGTL 192 (256)
T ss_pred CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 6799999999999 899999998873
No 68
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=78.78 E-value=3.8 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCchhHHHhhhe---------eeeeEeeCCCCChhHHhhcc
Q psy15098 41 ACLFCQEYFMDL---------LKVTTVDMQKPPPDFRDLYL 72 (92)
Q Consensus 41 ~CPFcQRlFMiL---------f~VTTVD~krKP~~f~dL~p 72 (92)
.||+|+++-..| +.+..+|....|+...+.+-
T Consensus 10 ~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i 50 (67)
T cd02973 10 TCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV 50 (67)
T ss_pred CCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC
Confidence 599999998887 66777888877775555443
No 69
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=78.76 E-value=1.9 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.0
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPD 66 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~ 66 (92)
-.||+|+++.-.| ...+.+|+...|..
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~ 37 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPT 37 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCC
Confidence 4699999999888 78889998765553
No 70
>PRK10542 glutathionine S-transferase; Provisional
Probab=76.52 E-value=2.6 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=25.0
Q ss_pred hHHHhhhe------eeeeEeeCCC----CChhHHhhccCCcc
Q psy15098 45 CQEYFMDL------LKVTTVDMQK----PPPDFRDLYLLKKT 76 (92)
Q Consensus 45 cQRlFMiL------f~VTTVD~kr----KP~~f~dL~p~g~~ 76 (92)
|+|+.++| |....||+.+ ++++|+++||-|+.
T Consensus 11 ~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~v 52 (201)
T PRK10542 11 SLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQV 52 (201)
T ss_pred HHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCC
Confidence 66766666 8888899864 45899999998874
No 71
>PTZ00062 glutaredoxin; Provisional
Probab=76.16 E-value=5 Score=30.38 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=38.4
Q ss_pred ccCCCeeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCChhHHhh--ccCCcceEEEeee
Q psy15098 21 LPTNKLKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPPPDFRDL--YLLKKTFWQLNFN 83 (92)
Q Consensus 21 ~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~dL--~p~g~~~~~~~~~ 83 (92)
+-.++|.++.|.... .-.||||+++--+| .....+|+..-++.-..+ ..+..++=|+-+|
T Consensus 110 i~~~~Vvvf~Kg~~~---~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 110 IRNHKILLFMKGSKT---FPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred HhcCCEEEEEccCCC---CCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 446788888886433 34799999999998 555678887666432222 1244566565544
No 72
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=74.65 E-value=2.5 Score=33.13 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.1
Q ss_pred ccCCchhHHHhhhe--------eeeeEeeCCCCC
Q psy15098 39 KGACLFCQEYFMDL--------LKVTTVDMQKPP 64 (92)
Q Consensus 39 lG~CPFcQRlFMiL--------f~VTTVD~krKP 64 (92)
.|+||+||+.--+| +.|-.|+++..+
T Consensus 152 ~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~ 185 (248)
T PRK13703 152 RGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVI 185 (248)
T ss_pred CCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 37899999999999 888888887654
No 73
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=74.16 E-value=3.1 Score=28.89 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPD 66 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~ 66 (92)
-.||+|+++.=.| ..++.+|....|..
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~ 38 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERNIFSSPLT 38 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEeeccCChhh
Confidence 4699999999888 88888998887754
No 74
>PRK10387 glutaredoxin 2; Provisional
Probab=73.68 E-value=3.7 Score=28.56 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=21.6
Q ss_pred cCCchhHHHhhhe------eeeeEeeCCCCChhHHhhccCCc
Q psy15098 40 GACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKK 75 (92)
Q Consensus 40 G~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL~p~g~ 75 (92)
..||+|+|+.|+| |++..++... .....+++|.++
T Consensus 7 ~~sp~~~kv~~~L~~~gi~y~~~~~~~~~-~~~~~~~~p~~~ 47 (210)
T PRK10387 7 DHCPFCVKARMIFGLKNIPVELIVLANDD-EATPIRMIGQKQ 47 (210)
T ss_pred CCCchHHHHHHHHHHcCCCeEEEEcCCCc-hhhHHHhcCCcc
Confidence 4699999999999 5555454321 222355666443
No 75
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=73.42 E-value=2.8 Score=24.45 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=19.8
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCCh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPP 65 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~ 65 (92)
..||+|+++-..| .....+|+...++
T Consensus 8 ~~C~~C~~~~~~L~~~~~~~~~idi~~~~~ 37 (77)
T TIGR02200 8 TWCGYCAQLMRTLDKLGAAYEWVDIEEDEG 37 (77)
T ss_pred CCChhHHHHHHHHHHcCCceEEEeCcCCHh
Confidence 4699999999888 4456788776654
No 76
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=72.67 E-value=1.4 Score=34.76 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.8
Q ss_pred cCCchhHHHhhhe
Q psy15098 40 GACLFCQEYFMDL 52 (92)
Q Consensus 40 G~CPFcQRlFMiL 52 (92)
-+||||-|+.|+.
T Consensus 7 dHCPfcvrarmi~ 19 (215)
T COG2999 7 DHCPFCVRARMIF 19 (215)
T ss_pred ccChHHHHHHHHh
Confidence 4799999999996
No 77
>PRK11752 putative S-transferase; Provisional
Probab=72.24 E-value=4.2 Score=30.64 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=26.2
Q ss_pred CchhHHHhhhe------------eeeeEeeCCC---CChhHHhhccCCcc
Q psy15098 42 CLFCQEYFMDL------------LKVTTVDMQK---PPPDFRDLYLLKKT 76 (92)
Q Consensus 42 CPFcQRlFMiL------------f~VTTVD~kr---KP~~f~dL~p~g~~ 76 (92)
+|+|+|+.++| |....||+.. ++++|.++||-++.
T Consensus 52 s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkV 101 (264)
T PRK11752 52 TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKI 101 (264)
T ss_pred CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCC
Confidence 79999998876 3555566643 46789999998764
No 78
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=72.09 E-value=4.2 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.6
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPD 66 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~ 66 (92)
-.||+|+++.=.| ..++.+|....|..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~ 38 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFKQPLT 38 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCCCcch
Confidence 4699999999888 88899999777643
No 79
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=70.01 E-value=4.6 Score=25.39 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=26.9
Q ss_pred cCCchhHHHhhhe--------eeeeEeeCCCCChhHHhhc
Q psy15098 40 GACLFCQEYFMDL--------LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 40 G~CPFcQRlFMiL--------f~VTTVD~krKP~~f~dL~ 71 (92)
-.|+.|..+--+| +.+..||+...|+++.+-+
T Consensus 8 ~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~ 47 (81)
T PF05768_consen 8 PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG 47 (81)
T ss_dssp SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC
T ss_pred CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc
Confidence 3599999999888 8899999998888776644
No 80
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=69.63 E-value=12 Score=18.80 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=22.6
Q ss_pred cCCchhHHHhhhe---------eeeeEeeCCCCChhHH
Q psy15098 40 GACLFCQEYFMDL---------LKVTTVDMQKPPPDFR 68 (92)
Q Consensus 40 G~CPFcQRlFMiL---------f~VTTVD~krKP~~f~ 68 (92)
..||.|+++...+ +.+..+|....++...
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 7 PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh
Confidence 3589999998887 7788888877776554
No 81
>KOG1752|consensus
Probab=68.22 E-value=9.4 Score=26.30 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=29.9
Q ss_pred ccccCCCeeEEEeecCCCccccCCchhHHHhhhe------eeeeEeeCCCCChhHHhh
Q psy15098 19 DYLPTNKLKERLASTIDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDL 70 (92)
Q Consensus 19 ~~~~~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL------f~VTTVD~krKP~~f~dL 70 (92)
+-+-+|++.++-|.+ ||+|+|+=-+| +.|--+|-..-+..+++.
T Consensus 9 ~~i~~~~VVifSKs~--------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~ 58 (104)
T KOG1752|consen 9 KMISENPVVIFSKSS--------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKA 58 (104)
T ss_pred HHhhcCCEEEEECCc--------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHH
Confidence 345678888887754 99999976666 555556665555566553
No 82
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=67.71 E-value=6.4 Score=23.36 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=16.6
Q ss_pred cCCchhHHHhhhe----ee--eeEeeCCC
Q psy15098 40 GACLFCQEYFMDL----LK--VTTVDMQK 62 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~--VTTVD~kr 62 (92)
-.||+|+++--+| .. .+.++...
T Consensus 7 ~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~ 35 (84)
T TIGR02180 7 SYCPYCKKAKEILAKLNVKPAYEVVELDQ 35 (84)
T ss_pred CCChhHHHHHHHHHHcCCCCCCEEEEeeC
Confidence 3699999999888 33 45666554
No 83
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=67.15 E-value=2.6 Score=32.16 Aligned_cols=12 Identities=17% Similarity=1.002 Sum_probs=10.3
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
+||||+|+.-.+
T Consensus 128 ~CpyC~kl~~~l 139 (251)
T PRK11657 128 NCPYCKQFWQQA 139 (251)
T ss_pred CChhHHHHHHHH
Confidence 699999997765
No 84
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=64.51 E-value=8.6 Score=22.87 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=11.7
Q ss_pred cCCchhHHHhhhe
Q psy15098 40 GACLFCQEYFMDL 52 (92)
Q Consensus 40 G~CPFcQRlFMiL 52 (92)
-.||+|+++--+|
T Consensus 8 ~~Cp~C~~~~~~l 20 (82)
T cd03419 8 SYCPYCKRAKSLL 20 (82)
T ss_pred CCCHHHHHHHHHH
Confidence 4699999999999
No 85
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=63.98 E-value=8.7 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.0
Q ss_pred CCchhHHHhhhe---------eeeeEeeCCCCC
Q psy15098 41 ACLFCQEYFMDL---------LKVTTVDMQKPP 64 (92)
Q Consensus 41 ~CPFcQRlFMiL---------f~VTTVD~krKP 64 (92)
.||+|.++--.| +....+|+...+
T Consensus 10 ~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~ 42 (85)
T PRK11200 10 GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG 42 (85)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEEECCCCh
Confidence 499999999888 446778887665
No 86
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=63.44 E-value=3.4 Score=31.17 Aligned_cols=12 Identities=17% Similarity=0.786 Sum_probs=10.5
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
+||||+|+.=.+
T Consensus 118 ~CpyCkkl~~~l 129 (232)
T PRK10877 118 TCGYCHKLHEQM 129 (232)
T ss_pred CChHHHHHHHHH
Confidence 699999998777
No 87
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=61.61 E-value=8.5 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=23.6
Q ss_pred hhHHHhhhe------eeeeEeeCCC---CChhHHhhccC-Cc
Q psy15098 44 FCQEYFMDL------LKVTTVDMQK---PPPDFRDLYLL-KK 75 (92)
Q Consensus 44 FcQRlFMiL------f~VTTVD~kr---KP~~f~dL~p~-g~ 75 (92)
.|.++.++| |.++.||+.. +.++|++.+|- ++
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~ 52 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGK 52 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSS
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccce
Confidence 456666666 9999999833 34889999998 54
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=60.61 E-value=2.7 Score=26.87 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=16.0
Q ss_pred EEeecCCCccccCCchhHHHh
Q psy15098 29 RLASTIDGRRKGACLFCQEYF 49 (92)
Q Consensus 29 vvKAgsDg~~lG~CPFcQRlF 49 (92)
+=...=++++--.||||++=|
T Consensus 29 I~~~~f~~~rYngCPfC~~~~ 49 (55)
T PF14447_consen 29 ICDNCFPGERYNGCPFCGTPF 49 (55)
T ss_pred eeccccChhhccCCCCCCCcc
Confidence 344566888899999999754
No 89
>PRK09381 trxA thioredoxin; Provisional
Probab=60.25 E-value=18 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=31.3
Q ss_pred CCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCcceE
Q psy15098 41 ACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKKTFW 78 (92)
Q Consensus 41 ~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~~~~ 78 (92)
.||.|+++.-.+ +.+-.||....++..+++...+-+-+
T Consensus 32 ~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 32 WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 799999988776 67899999999998888777666644
No 90
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=59.28 E-value=11 Score=23.20 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=21.2
Q ss_pred CchhHHHhhhe--------eeeeEeeCCCCChhHHhhc
Q psy15098 42 CLFCQEYFMDL--------LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 42 CPFcQRlFMiL--------f~VTTVD~krKP~~f~dL~ 71 (92)
||.|.++...+ .++..+|. .-++.+.+.+
T Consensus 10 C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~~~~~~yg 46 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELGIEVEIIDI-EDFEEIEKYG 46 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEET-TTHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEc-cCHHHHHHcC
Confidence 99999998887 77888887 4444445543
No 91
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=57.74 E-value=12 Score=22.02 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=24.6
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhc
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~ 71 (92)
-.||.|+++.=.| +.+..||....|+..++..
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~ 50 (82)
T TIGR00411 9 PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYG 50 (82)
T ss_pred CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcC
Confidence 4699999877665 5667899988888777654
No 92
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=57.34 E-value=12 Score=23.69 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=18.0
Q ss_pred CCchhHHHhhhe--e-------eeeEeeCCCCC
Q psy15098 41 ACLFCQEYFMDL--L-------KVTTVDMQKPP 64 (92)
Q Consensus 41 ~CPFcQRlFMiL--f-------~VTTVD~krKP 64 (92)
.||+|.++-..| . ....+|+....
T Consensus 9 ~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~ 41 (86)
T TIGR02183 9 GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG 41 (86)
T ss_pred CCccHHHHHHHHHHhCcccCCCcEEEEECCCCH
Confidence 699999999998 2 35567776543
No 93
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=56.67 E-value=11 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.8
Q ss_pred ccCCchhHHHhhhe----eeeeEeeCCCCChhH
Q psy15098 39 KGACLFCQEYFMDL----LKVTTVDMQKPPPDF 67 (92)
Q Consensus 39 lG~CPFcQRlFMiL----f~VTTVD~krKP~~f 67 (92)
.-.|+.|++..-.| ..++.+|..+.|..-
T Consensus 7 ~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~ 39 (132)
T PRK13344 7 ISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTK 39 (132)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCH
Confidence 45799999999999 888999988777543
No 94
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=55.37 E-value=22 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=28.4
Q ss_pred eeEEEeecCCCccccCCchhHHHhhhe----eeeeEeeCCCCChhHHh
Q psy15098 26 LKERLASTIDGRRKGACLFCQEYFMDL----LKVTTVDMQKPPPDFRD 69 (92)
Q Consensus 26 i~lvvKAgsDg~~lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~d 69 (92)
|+||..+- -+ -...||+|+++-.+| ..+.-+|+...++...+
T Consensus 2 VvlYttsl-~g-iR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~E 47 (147)
T cd03031 2 VVLYTTSL-RG-VRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREE 47 (147)
T ss_pred EEEEEcCC-cC-CCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 55666542 22 234699999999999 66677888777664443
No 95
>KOG0867|consensus
Probab=54.59 E-value=11 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.1
Q ss_pred chhHHHhhhe------eeeeEeeC---CCCChhHHhhccCCc
Q psy15098 43 LFCQEYFMDL------LKVTTVDM---QKPPPDFRDLYLLKK 75 (92)
Q Consensus 43 PFcQRlFMiL------f~VTTVD~---krKP~~f~dL~p~g~ 75 (92)
|.|.++.|.+ +++..||+ .+++++|.++||-++
T Consensus 12 ~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~k 53 (226)
T KOG0867|consen 12 PPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGK 53 (226)
T ss_pred cchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCC
Confidence 6688999988 77775554 577999999999775
No 96
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.98 E-value=3.6 Score=24.56 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=5.3
Q ss_pred cCCchhHHHh
Q psy15098 40 GACLFCQEYF 49 (92)
Q Consensus 40 G~CPFcQRlF 49 (92)
|.||.|+|=|
T Consensus 21 ~~CPlC~r~l 30 (54)
T PF04423_consen 21 GCCPLCGRPL 30 (54)
T ss_dssp EE-TTT--EE
T ss_pred CcCCCCCCCC
Confidence 4899999854
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=53.90 E-value=14 Score=21.79 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCchhHHHhhhe-----------eeeeEeeCCCC-ChhHHhhccCCc
Q psy15098 41 ACLFCQEYFMDL-----------LKVTTVDMQKP-PPDFRDLYLLKK 75 (92)
Q Consensus 41 ~CPFcQRlFMiL-----------f~VTTVD~krK-P~~f~dL~p~g~ 75 (92)
.||.|++..-.+ +.+-.|+.+.. ++..++.....+
T Consensus 30 ~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 76 (116)
T cd02966 30 WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYG 76 (116)
T ss_pred cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcC
Confidence 699999877666 56777888766 788777765554
No 98
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=53.52 E-value=23 Score=22.83 Aligned_cols=48 Identities=8% Similarity=0.132 Sum_probs=32.0
Q ss_pred CCCeeEEEeecCCCccccCCchhHHHhhhe---------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 23 TNKLKERLASTIDGRRKGACLFCQEYFMDL---------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 23 ~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL---------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.+|+++.+=.+ ..||.|..+-.++ +++..+|....|+...+.+-.+=+
T Consensus 11 ~~pv~i~~F~~------~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vP 67 (89)
T cd03026 11 NGPINFETYVS------LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVP 67 (89)
T ss_pred CCCEEEEEEEC------CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCC
Confidence 45666444333 2377777766666 788899999888888877654433
No 99
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=49.56 E-value=49 Score=21.78 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=32.5
Q ss_pred CCCeeEEEeecCCCccccCCchhHHHhhhe---------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 23 TNKLKERLASTIDGRRKGACLFCQEYFMDL---------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 23 ~~~i~lvvKAgsDg~~lG~CPFcQRlFMiL---------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.++..+++--+ .-.||.|+++--++ ..+..||.+..|+.-....-.+-+
T Consensus 20 ~~~~~vvv~f~-----a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vP 77 (113)
T cd02975 20 KNPVDLVVFSS-----KEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVP 77 (113)
T ss_pred CCCeEEEEEeC-----CCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCC
Confidence 45666666543 23799999887777 478889998877665554433333
No 100
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=49.05 E-value=19 Score=29.49 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.7
Q ss_pred CCchhHHHhhhe----eeeeEeeCCCCCh
Q psy15098 41 ACLFCQEYFMDL----LKVTTVDMQKPPP 65 (92)
Q Consensus 41 ~CPFcQRlFMiL----f~VTTVD~krKP~ 65 (92)
.||+|+++=..| ..-+.||+++.|+
T Consensus 11 ~Cp~C~~aK~~L~~~gi~~~~idi~~~~~ 39 (410)
T PRK12759 11 NCPFCDLAKSWFGANDIPFTQISLDDDVK 39 (410)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCChh
Confidence 599999999999 5555677776664
No 101
>PRK12559 transcriptional regulator Spx; Provisional
Probab=48.84 E-value=16 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=24.0
Q ss_pred ccCCchhHHHhhhe----eeeeEeeCCCCChhHHh
Q psy15098 39 KGACLFCQEYFMDL----LKVTTVDMQKPPPDFRD 69 (92)
Q Consensus 39 lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~d 69 (92)
...|+.|.+..-.| ..++.+|....|....+
T Consensus 7 ~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~e 41 (131)
T PRK12559 7 TASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDE 41 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHH
Confidence 34699999999988 78888888777754433
No 102
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=47.84 E-value=8.4 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.584 Sum_probs=14.2
Q ss_pred CCchhHHHhhhe-------------eeeeEeeCCCC
Q psy15098 41 ACLFCQEYFMDL-------------LKVTTVDMQKP 63 (92)
Q Consensus 41 ~CPFcQRlFMiL-------------f~VTTVD~krK 63 (92)
.||+|+++.-.+ +.+-.+++...
T Consensus 16 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (112)
T PF13098_consen 16 WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDS 51 (112)
T ss_dssp T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCc
Confidence 599999775444 55666666543
No 103
>PHA03066 Hypothetical protein; Provisional
Probab=46.65 E-value=3.5 Score=29.68 Aligned_cols=17 Identities=41% Similarity=0.786 Sum_probs=14.7
Q ss_pred eeccccCCCeeEEEeec
Q psy15098 17 YLDYLPTNKLKERLAST 33 (92)
Q Consensus 17 ~~~~~~~~~i~lvvKAg 33 (92)
|+.|.||||+++.|+--
T Consensus 19 ~~n~~PTNKlqlaV~~l 35 (110)
T PHA03066 19 YFNYYPTNKLQMAVKEL 35 (110)
T ss_pred HHhhccChhHHhhhhhh
Confidence 68899999999988753
No 104
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=46.30 E-value=34 Score=21.34 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.4
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCcce
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKKTF 77 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~~~ 77 (92)
..||.|+..-..+ +.+.-||.+..|+-..++.-.+-+.
T Consensus 23 ~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt 70 (97)
T cd02949 23 PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPT 70 (97)
T ss_pred CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccE
Confidence 5799999988877 6678899988888877776555444
No 105
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=45.00 E-value=10 Score=27.03 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=10.3
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
+||||+++.-.+
T Consensus 88 ~Cp~C~~~~~~l 99 (197)
T cd03020 88 DCPYCRKLEKEL 99 (197)
T ss_pred CCccHHHHHHHH
Confidence 599999998776
No 106
>PF13166 AAA_13: AAA domain
Probab=42.65 E-value=6.1 Score=33.19 Aligned_cols=21 Identities=19% Similarity=0.643 Sum_probs=12.4
Q ss_pred eEEEeecCCCccc-cCCchhHH
Q psy15098 27 KERLASTIDGRRK-GACLFCQE 47 (92)
Q Consensus 27 ~lvvKAgsDg~~l-G~CPFcQR 47 (92)
.-|++.|..=..- ..|||||+
T Consensus 242 ~~Wv~~G~~~~~~~~~CpfC~q 263 (712)
T PF13166_consen 242 SDWVEQGLELHKEGDTCPFCQQ 263 (712)
T ss_pred hhHHHcCccCCCCCCcCCCCCC
Confidence 3445554433222 47999998
No 107
>PRK14563 ribosome modulation factor; Provisional
Probab=42.36 E-value=8.9 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.7
Q ss_pred eecCCCccccCCchhHH
Q psy15098 31 ASTIDGRRKGACLFCQE 47 (92)
Q Consensus 31 KAgsDg~~lG~CPFcQR 47 (92)
.||+.|.+...||+.+-
T Consensus 18 qAGv~GrSke~CPy~~~ 34 (55)
T PRK14563 18 QAGIAGRSKEMCPYQTL 34 (55)
T ss_pred hhhccCCCcccCCCCCc
Confidence 38899999999999864
No 108
>KOG4420|consensus
Probab=41.15 E-value=8.1 Score=32.17 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=28.6
Q ss_pred hHHHhhhe---------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 45 CQEYFMDL---------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 45 cQRlFMiL---------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
+|++-|++ +.|....=+.+-+||.++||++..
T Consensus 38 sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gev 78 (325)
T KOG4420|consen 38 SQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEV 78 (325)
T ss_pred cceeeeehhhcccccceeeccCccccccCchheecCCCCCC
Confidence 78999988 888888889999999999999874
No 109
>PF14353 CpXC: CpXC protein
Probab=40.62 E-value=11 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.1
Q ss_pred CCchhHHHhhheeeeeEeeCCCCC
Q psy15098 41 ACLFCQEYFMDLLKVTTVDMQKPP 64 (92)
Q Consensus 41 ~CPFcQRlFMiLf~VTTVD~krKP 64 (92)
-||-|+..|++-+.....|++++-
T Consensus 40 ~CP~Cg~~~~~~~p~lY~D~~~~~ 63 (128)
T PF14353_consen 40 TCPSCGHKFRLEYPLLYHDPEKKF 63 (128)
T ss_pred ECCCCCCceecCCCEEEEcCCCCE
Confidence 499999999988888888887653
No 110
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=39.59 E-value=4.9 Score=28.65 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=14.5
Q ss_pred eeccccCCCeeEEEeec
Q psy15098 17 YLDYLPTNKLKERLAST 33 (92)
Q Consensus 17 ~~~~~~~~~i~lvvKAg 33 (92)
|+.|.|||++++.++-.
T Consensus 18 ~~~y~PTNK~ql~v~~~ 34 (109)
T PF06129_consen 18 FFNYYPTNKMQLAVREL 34 (109)
T ss_pred HHhhccchHHHHhhccc
Confidence 68899999999888753
No 111
>PF04957 RMF: Ribosome modulation factor; InterPro: IPR007040 This entry contains ribosome modulation factors (RMF). They associate with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia colicells [, ]. It has been proposed that RMF mediates the formation of a 'storage ribosome', the 100S particle, in stationary phase by inactivating excess ribosomes to protect them from degradation and to maintain the required balance between the concentrations of ribosomes and protein synthesis factors in order to maintain translational elongation efficiency [, ]. ; PDB: 2JRM_A 3V24_V 3V22_V.
Probab=39.33 E-value=9.6 Score=24.22 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=11.5
Q ss_pred ecCCCccccCCchhH
Q psy15098 32 STIDGRRKGACLFCQ 46 (92)
Q Consensus 32 AgsDg~~lG~CPFcQ 46 (92)
||..|.+...||+++
T Consensus 19 AG~~Grske~CPy~~ 33 (55)
T PF04957_consen 19 AGLSGRSKELCPYQD 33 (55)
T ss_dssp HHCTTTSGCC--SSS
T ss_pred hhccCCCcccCCCCC
Confidence 788999999999975
No 112
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=39.09 E-value=26 Score=27.17 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=20.0
Q ss_pred cCCchhHHHhhhe--------eeeeEeeCCCCC
Q psy15098 40 GACLFCQEYFMDL--------LKVTTVDMQKPP 64 (92)
Q Consensus 40 G~CPFcQRlFMiL--------f~VTTVD~krKP 64 (92)
+.||+|++..-+| +.|..|+++..+
T Consensus 176 swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~ 208 (271)
T TIGR02740 176 SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGP 208 (271)
T ss_pred CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCc
Confidence 4699999998888 668788887654
No 113
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=39.04 E-value=68 Score=18.03 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCchhHHHhhhe---------eeeeEeeCCCCChhHHhhccCCcceEE
Q psy15098 41 ACLFCQEYFMDL---------LKVTTVDMQKPPPDFRDLYLLKKTFWQ 79 (92)
Q Consensus 41 ~CPFcQRlFMiL---------f~VTTVD~krKP~~f~dL~p~g~~~~~ 79 (92)
.|+.|+++--.+ +.+-.+|...-++..+.+...+-+.+-
T Consensus 21 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 21 WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFL 68 (93)
T ss_pred CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEE
Confidence 699999888777 777788888877777777666655443
No 114
>PHA02973 hypothetical protein; Provisional
Probab=38.51 E-value=7.4 Score=27.71 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=19.0
Q ss_pred eeccccCCCeeEEEeecCCCccccCCc
Q psy15098 17 YLDYLPTNKLKERLASTIDGRRKGACL 43 (92)
Q Consensus 17 ~~~~~~~~~i~lvvKAgsDg~~lG~CP 43 (92)
|+.|.|||++++-|+--.+.. .-+-|
T Consensus 17 ~fn~~pTNKmq~aV~~l~~e~-~~d~p 42 (102)
T PHA02973 17 FFNFKRTNKMDIGINPIKKIP-WSDND 42 (102)
T ss_pred Hhhccccchhhhhhhhccccc-ccCCC
Confidence 688999999999998643333 44555
No 115
>PHA02691 hypothetical protein; Provisional
Probab=36.58 E-value=5.7 Score=28.62 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.6
Q ss_pred eeccccCCCeeEEEeec
Q psy15098 17 YLDYLPTNKLKERLAST 33 (92)
Q Consensus 17 ~~~~~~~~~i~lvvKAg 33 (92)
|+.|.|||++++-|+--
T Consensus 19 ~~ny~PTNKlqlaV~~l 35 (110)
T PHA02691 19 VLTFLPTNKMQLAVREL 35 (110)
T ss_pred HHhhccchhHHHhhhhh
Confidence 68899999999988753
No 116
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=35.90 E-value=35 Score=22.79 Aligned_cols=27 Identities=22% Similarity=0.082 Sum_probs=23.3
Q ss_pred cCCchhHHHhhhe----eeeeEeeCCCCChh
Q psy15098 40 GACLFCQEYFMDL----LKVTTVDMQKPPPD 66 (92)
Q Consensus 40 G~CPFcQRlFMiL----f~VTTVD~krKP~~ 66 (92)
-.|+.|.+..-.| ..++.+|....|..
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~~p~s 37 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRKDGLD 37 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecccCCCC
Confidence 4699999999999 88899999888843
No 117
>KOG1538|consensus
Probab=34.81 E-value=14 Score=34.64 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=9.2
Q ss_pred ccccCCchhHH
Q psy15098 37 RRKGACLFCQE 47 (92)
Q Consensus 37 ~~lG~CPFcQR 47 (92)
.+.|+||||+.
T Consensus 1064 LqKGHCPFCrT 1074 (1081)
T KOG1538|consen 1064 LQKGHCPFCRT 1074 (1081)
T ss_pred HhcCCCCcccc
Confidence 47899999984
No 118
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=34.42 E-value=15 Score=30.79 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=18.5
Q ss_pred ceeceeEeeeeeeeccccCCC---eeEEEeecCCCc
Q psy15098 5 QLTGLECYWDIKYLDYLPTNK---LKERLASTIDGR 37 (92)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---i~lvvKAgsDg~ 37 (92)
.||||||-|+-- |... +.|+|++.++..
T Consensus 171 dLtGlsCRW~~I-----ps~~g~ilSliV~p~~~~~ 201 (373)
T PF11294_consen 171 DLTGLSCRWNPI-----PSRNGEILSLIVKPTSSAD 201 (373)
T ss_pred CCCCceeeCCcC-----CCCCCeEEEEEEEeCCCCC
Confidence 589999999742 4432 347777765543
No 119
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.64 E-value=11 Score=24.12 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=8.8
Q ss_pred CCchhHHHhhh
Q psy15098 41 ACLFCQEYFMD 51 (92)
Q Consensus 41 ~CPFcQRlFMi 51 (92)
-||.|||-|-.
T Consensus 14 ICpvCqRPFsW 24 (54)
T COG4338 14 ICPVCQRPFSW 24 (54)
T ss_pred hhhhhcCchHH
Confidence 39999998753
No 120
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=32.50 E-value=20 Score=23.01 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.8
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
.||+|.++.=.+
T Consensus 16 ~Cp~C~~~~~~l 27 (154)
T cd03023 16 NCGYCKKLAPEL 27 (154)
T ss_pred CChhHHHhhHHH
Confidence 499999987665
No 121
>PF03550 LolB: Outer membrane lipoprotein LolB; InterPro: IPR004565 This protein, LolB, is known so far only in the gamma subdivision of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.; GO: 0015031 protein transport, 0009279 cell outer membrane; PDB: 1IWM_B 1IWN_A.
Probab=31.33 E-value=58 Score=22.99 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=17.2
Q ss_pred CCceeceeE-----eeeeeeeccccCCCee
Q psy15098 3 QGQLTGLEC-----YWDIKYLDYLPTNKLK 27 (92)
Q Consensus 3 ~~~~~~~~~-----~~~~~~~~~~~~~~i~ 27 (92)
+|++..++. =|.|.|.+|-+.+.+.
T Consensus 107 ~g~~~~l~q~~~~~gW~I~Y~~Y~~~~~~~ 136 (157)
T PF03550_consen 107 QGRLSSLEQKYSGDGWQIEYSRYQQVDGPA 136 (157)
T ss_dssp TSSEEEEEEECSSEEEEEEE--EETTSSS-
T ss_pred CCChhhEEEccCCCCEEEEEeeeccCCCCC
Confidence 578888887 5999999996666543
No 122
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=31.25 E-value=56 Score=19.33 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=26.7
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCC
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLK 74 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g 74 (92)
..|+.|+++...+ +.+-.||....++..+++.-.+
T Consensus 24 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 68 (101)
T TIGR01068 24 PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS 68 (101)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc
Confidence 3799999888777 6777888888887777765444
No 123
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.08 E-value=31 Score=24.48 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=21.0
Q ss_pred CCChhHHhhccCCcceEE---Eeeeeeeec
Q psy15098 62 KPPPDFRDLYLLKKTFWQ---LNFNVTGHR 88 (92)
Q Consensus 62 rKP~~f~dL~p~g~~~~~---~~~~~~~~~ 88 (92)
.+|++++..+|..+-|.. .-|||.|+.
T Consensus 36 ~~P~diK~~f~~d~~~~~Dnr~Vfdi~GN~ 65 (98)
T COG4680 36 KKPEDIKSVFPLDNFKYLDNRVVFDIGGNK 65 (98)
T ss_pred CCHHHHHHhcCcccceeccceEEEEcCCCE
Confidence 589999999997776653 348888874
No 124
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=30.65 E-value=53 Score=19.93 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=26.9
Q ss_pred CCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCcc
Q psy15098 41 ACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKKT 76 (92)
Q Consensus 41 ~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~~ 76 (92)
.|+.|+++--.+ +.+..+|....++..+++...+-+
T Consensus 29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P 74 (103)
T cd03001 29 WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFP 74 (103)
T ss_pred CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccC
Confidence 699999886544 667788988888887776655544
No 125
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=30.58 E-value=1e+02 Score=18.45 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=26.5
Q ss_pred CCchhHHHhhhe------------eeeeEeeCCC-CChhHHhhccCCcceE
Q psy15098 41 ACLFCQEYFMDL------------LKVTTVDMQK-PPPDFRDLYLLKKTFW 78 (92)
Q Consensus 41 ~CPFcQRlFMiL------------f~VTTVD~kr-KP~~f~dL~p~g~~~~ 78 (92)
.||.|+++--.+ +.+-.+|... -++..+++.-.+-+.+
T Consensus 29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 29 WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 599999775554 4566788888 6777777766555444
No 126
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=30.20 E-value=96 Score=18.67 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=29.0
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCcceE
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKKTFW 78 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~~~~ 78 (92)
..|+.|++..-.| +.+--||....|+..++.+..+-+-+
T Consensus 24 ~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~ 72 (97)
T cd02984 24 PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTF 72 (97)
T ss_pred CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEE
Confidence 4699999887777 56666788888888887776665543
No 127
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=29.84 E-value=21 Score=21.18 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=9.4
Q ss_pred cccCCchhHHHhhh
Q psy15098 38 RKGACLFCQEYFMD 51 (92)
Q Consensus 38 ~lG~CPFcQRlFMi 51 (92)
++-.||||..--+.
T Consensus 2 ~LkPCPFCG~~~~~ 15 (61)
T PF14354_consen 2 ELKPCPFCGSADVL 15 (61)
T ss_pred CCcCCCCCCCcceE
Confidence 46679999754443
No 128
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=28.91 E-value=13 Score=19.48 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.4
Q ss_pred ccCCchhHHHhh
Q psy15098 39 KGACLFCQEYFM 50 (92)
Q Consensus 39 lG~CPFcQRlFM 50 (92)
+-.||.|.|-|.
T Consensus 2 l~~C~~CgR~F~ 13 (25)
T PF13913_consen 2 LVPCPICGRKFN 13 (25)
T ss_pred CCcCCCCCCEEC
Confidence 356999999884
No 129
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=28.79 E-value=27 Score=22.94 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=10.0
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
.||+|.++.-.+
T Consensus 23 ~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 23 QCPHCAKFHEEL 34 (162)
T ss_dssp TSHHHHHHHHHH
T ss_pred CCHhHHHHHHHH
Confidence 499999987766
No 130
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=28.14 E-value=47 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=19.3
Q ss_pred CCchhHHHhhhe--------eeeeEeeCCCCC
Q psy15098 41 ACLFCQEYFMDL--------LKVTTVDMQKPP 64 (92)
Q Consensus 41 ~CPFcQRlFMiL--------f~VTTVD~krKP 64 (92)
.||.|+++--+| ..+-.||+..-+
T Consensus 34 ~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~ 65 (122)
T TIGR01295 34 TCPYCRKFSGTLSGVVAQTKAPIYYIDSENNG 65 (122)
T ss_pred CChhHHHHhHHHHHHHHhcCCcEEEEECCCcc
Confidence 499999998888 668888887543
No 131
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.20 E-value=17 Score=17.13 Aligned_cols=7 Identities=43% Similarity=1.507 Sum_probs=5.4
Q ss_pred ceeEeee
Q psy15098 8 GLECYWD 14 (92)
Q Consensus 8 ~~~~~~~ 14 (92)
..||||.
T Consensus 3 ~~~CFWK 9 (12)
T PF02083_consen 3 KSECFWK 9 (12)
T ss_pred ccchhhh
Confidence 4689994
No 132
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=27.06 E-value=59 Score=25.15 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=38.0
Q ss_pred eeeeeeccccCC--CeeEEEeecCCCccccCCchhHHHhhhe---eeeeEeeC--------CCCChhHHhhcc
Q psy15098 13 WDIKYLDYLPTN--KLKERLASTIDGRRKGACLFCQEYFMDL---LKVTTVDM--------QKPPPDFRDLYL 72 (92)
Q Consensus 13 ~~~~~~~~~~~~--~i~lvvKAgsDg~~lG~CPFcQRlFMiL---f~VTTVD~--------krKP~~f~dL~p 72 (92)
||||- |.|++ .|.-+.+-+.==+.+|-=||+|++.=-| |+|-.|.. +-|-+|+++.+|
T Consensus 41 wdik~--yv~~~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FP 111 (180)
T COG4502 41 WDIKN--YVKPECGKIYDILKEPHFFRNLGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFP 111 (180)
T ss_pred cchhh--ccCccCCeeeeeccCcchhhhcCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCC
Confidence 88874 55554 4444455432337789999999998887 55544433 356678888776
No 133
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=26.65 E-value=1.3e+02 Score=17.85 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCcceE
Q psy15098 41 ACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKKTFW 78 (92)
Q Consensus 41 ~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~~~~ 78 (92)
.||.|+++.=.+ +.+-.||....++..+++.-.+-+-.
T Consensus 28 ~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 28 WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTI 75 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEE
T ss_pred CCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEE
Confidence 499999988666 56667888877777777766555543
No 134
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.29 E-value=71 Score=20.92 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=20.4
Q ss_pred ccCCchhHHHhhhe----eeeeEeeCCCCChhHHh
Q psy15098 39 KGACLFCQEYFMDL----LKVTTVDMQKPPPDFRD 69 (92)
Q Consensus 39 lG~CPFcQRlFMiL----f~VTTVD~krKP~~f~d 69 (92)
..+|.-|++..-.| ..++.+|+...|-.-.+
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~e 37 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREE 37 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTTS---HHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHH
Confidence 35799999999999 89999999997754433
No 135
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=26.12 E-value=26 Score=30.36 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=10.1
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
-||+|||+|-..
T Consensus 240 YC~~C~r~f~~~ 251 (470)
T COG5188 240 YCVKCGREFSRS 251 (470)
T ss_pred eeHhhhhHhhhh
Confidence 399999999763
No 136
>PRK10996 thioredoxin 2; Provisional
Probab=26.07 E-value=1.1e+02 Score=20.75 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=30.2
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCcceEE
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKKTFWQ 79 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~~~~~ 79 (92)
..||.|+++--++ +.+-.||....|+..++....+-+-.-
T Consensus 62 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 62 PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 4599999875555 566678999999988888777666543
No 137
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=25.76 E-value=28 Score=20.14 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=10.3
Q ss_pred CCchhHHHhhhe
Q psy15098 41 ACLFCQEYFMDL 52 (92)
Q Consensus 41 ~CPFcQRlFMiL 52 (92)
.||+|.++.-.+
T Consensus 8 ~Cp~C~~~~~~l 19 (98)
T cd02972 8 LCPYCYLFEPEL 19 (98)
T ss_pred CCHhHHhhhHHH
Confidence 599999988777
No 138
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=24.48 E-value=73 Score=18.45 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=21.4
Q ss_pred CCchhHHHhhhe------------eeeeEeeCCCCChhHHhhc
Q psy15098 41 ACLFCQEYFMDL------------LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 41 ~CPFcQRlFMiL------------f~VTTVD~krKP~~f~dL~ 71 (92)
.|+.|+++.-.+ +.+-.||..+-++-.++++
T Consensus 26 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 68 (101)
T cd02961 26 WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYG 68 (101)
T ss_pred CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCC
Confidence 599999987766 4555667666566666654
No 139
>COG5254 ARV1 Predicted membrane protein [Function unknown]
Probab=24.40 E-value=48 Score=26.70 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=16.0
Q ss_pred EEEeecCCCccccCCchhHHHh
Q psy15098 28 ERLASTIDGRRKGACLFCQEYF 49 (92)
Q Consensus 28 lvvKAgsDg~~lG~CPFcQRlF 49 (92)
++..-|.+.-++.+||.|||-.
T Consensus 13 Lyt~ysts~iqls~Cp~C~~~~ 34 (239)
T COG5254 13 LYTRYSTSAIQLSRCPSCNRKM 34 (239)
T ss_pred eeeeccCcceehhcCchHHHHH
Confidence 3444445778899999999954
No 140
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=24.40 E-value=91 Score=20.46 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCchhHHHhhhe-------------eeeeEeeCCCCChhHHhhccCC
Q psy15098 41 ACLFCQEYFMDL-------------LKVTTVDMQKPPPDFRDLYLLK 74 (92)
Q Consensus 41 ~CPFcQRlFMiL-------------f~VTTVD~krKP~~f~dL~p~g 74 (92)
-||.|++..-.| +.|-.|+....++.+++.....
T Consensus 28 wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~ 74 (132)
T cd02964 28 WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM 74 (132)
T ss_pred CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC
Confidence 599999876555 3477788888887776655443
No 141
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=24.30 E-value=59 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=17.5
Q ss_pred CCchhHHHhhhe--------eeeeEeeCCCC
Q psy15098 41 ACLFCQEYFMDL--------LKVTTVDMQKP 63 (92)
Q Consensus 41 ~CPFcQRlFMiL--------f~VTTVD~krK 63 (92)
.||+|++..=.| +.|-.|+++..
T Consensus 80 wCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 80 HCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred CCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 599999987666 66777777655
No 142
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.00 E-value=66 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=24.2
Q ss_pred ccCCchhHHHhhhe----eeeeEeeCCCCChhH
Q psy15098 39 KGACLFCQEYFMDL----LKVTTVDMQKPPPDF 67 (92)
Q Consensus 39 lG~CPFcQRlFMiL----f~VTTVD~krKP~~f 67 (92)
.-+|+-|.+..-.| ..++.+|+.+.|..-
T Consensus 7 ~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~ 39 (113)
T cd03033 7 KPGCANNARQKALLEAAGHEVEVRDLLTEPWTA 39 (113)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCH
Confidence 35799999999999 889999998887443
No 143
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=23.99 E-value=1e+02 Score=18.95 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCchhHHHhhhe-----------eeeeEeeCCCCChhHHhhc
Q psy15098 41 ACLFCQEYFMDL-----------LKVTTVDMQKPPPDFRDLY 71 (92)
Q Consensus 41 ~CPFcQRlFMiL-----------f~VTTVD~krKP~~f~dL~ 71 (92)
-||.|+++.-++ +.+-.||....|+..++..
T Consensus 27 wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~ 68 (101)
T cd02994 27 WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFF 68 (101)
T ss_pred CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcC
Confidence 699999877655 5556788877776655544
No 144
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=22.77 E-value=22 Score=21.28 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=10.2
Q ss_pred ccccCCchhHHHh
Q psy15098 37 RRKGACLFCQEYF 49 (92)
Q Consensus 37 ~~lG~CPFcQRlF 49 (92)
+++--||.|+|++
T Consensus 44 ~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 44 DEIVFCPNCGRIL 56 (56)
T ss_pred CCeEECcCCCccC
Confidence 4677899999863
No 145
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=22.76 E-value=1.6e+02 Score=18.09 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=25.9
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCC
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLK 74 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g 74 (92)
..||.|+++--++ +.+--||...-|+..++++-.+
T Consensus 28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 72 (101)
T cd03003 28 PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS 72 (101)
T ss_pred CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCc
Confidence 4699999877666 5677899988887766655444
No 146
>KOG2324|consensus
Probab=22.51 E-value=30 Score=30.05 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred ccccCCchhHHH-------------hhhe------eeeeEeeCCCCCh
Q psy15098 37 RRKGACLFCQEY-------------FMDL------LKVTTVDMQKPPP 65 (92)
Q Consensus 37 ~~lG~CPFcQRl-------------FMiL------f~VTTVD~krKP~ 65 (92)
.++..||-|+.- |.+= |++++||+..||+
T Consensus 245 sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe 292 (457)
T KOG2324|consen 245 SKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPE 292 (457)
T ss_pred CccccCCcccCCCcccccceEEEEEEEeccccccccCceeeeecCCcc
Confidence 445778888872 1111 9999999999998
No 147
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=21.94 E-value=91 Score=20.13 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=15.3
Q ss_pred CCchhHHHhhhe-------------eeeeEeeCCCC
Q psy15098 41 ACLFCQEYFMDL-------------LKVTTVDMQKP 63 (92)
Q Consensus 41 ~CPFcQRlFMiL-------------f~VTTVD~krK 63 (92)
.||.|+++--.+ +.+-.||+...
T Consensus 25 wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 60 (125)
T cd02951 25 GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGD 60 (125)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCC
Confidence 499999975332 55566776654
No 148
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=20.78 E-value=74 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=18.0
Q ss_pred CCchhHHHhhhe--------eeeeEeeCCCCC
Q psy15098 41 ACLFCQEYFMDL--------LKVTTVDMQKPP 64 (92)
Q Consensus 41 ~CPFcQRlFMiL--------f~VTTVD~krKP 64 (92)
-||.|++..=.| +.|-.|+++..+
T Consensus 61 WCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~ 92 (153)
T TIGR02738 61 TCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQG 92 (153)
T ss_pred CChhHHHHHHHHHHHHHHcCCcEEEEEeCCCc
Confidence 499999988777 566677776543
No 149
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.73 E-value=95 Score=20.80 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.2
Q ss_pred ccCCchhHHHhhhe----eeeeEeeCCCCChh
Q psy15098 39 KGACLFCQEYFMDL----LKVTTVDMQKPPPD 66 (92)
Q Consensus 39 lG~CPFcQRlFMiL----f~VTTVD~krKP~~ 66 (92)
.-+|.-|++..-.| ..+..+|+...|..
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t 37 (114)
T TIGR00014 6 NPRCSKSRNTLALLEDKGIEPEVVKYLKNPPT 37 (114)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccCCCcC
Confidence 34799999999999 88889998877743
No 150
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.59 E-value=28 Score=18.50 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=7.5
Q ss_pred cCCchhHHHh
Q psy15098 40 GACLFCQEYF 49 (92)
Q Consensus 40 G~CPFcQRlF 49 (92)
-.||.|++.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998764
No 151
>PF12599 DUF3768: Protein of unknown function (DUF3768); InterPro: IPR022243 This family of proteins is found in bacteria. Proteins in this family are typically between 108 and 129 amino acids in length. There are two conserved sequence motifs: NDP and RVLT.
Probab=20.43 E-value=79 Score=21.62 Aligned_cols=14 Identities=36% Similarity=1.042 Sum_probs=11.8
Q ss_pred eeceeEeeeeeeec
Q psy15098 6 LTGLECYWDIKYLD 19 (92)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (92)
+-|-.+||.|.|.|
T Consensus 44 ~~g~~vfWKIDyYD 57 (84)
T PF12599_consen 44 FDGEKVFWKIDYYD 57 (84)
T ss_pred ECCEEEEEEEEEEc
Confidence 45889999999976
No 152
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=20.38 E-value=1.3e+02 Score=18.12 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=26.1
Q ss_pred cCCchhHHHhhhe----------eeeeEeeCCCCChhHHhhccCCc
Q psy15098 40 GACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLYLLKK 75 (92)
Q Consensus 40 G~CPFcQRlFMiL----------f~VTTVD~krKP~~f~dL~p~g~ 75 (92)
..|+-|+++--.+ +.+-.||..+.++.-+++...+-
T Consensus 22 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~ 67 (96)
T cd02956 22 PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQAL 67 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCC
Confidence 4699999887776 55678898888777666554443
No 153
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.16 E-value=75 Score=23.31 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=18.6
Q ss_pred eeeeEeeCCCCChhHHhhcc
Q psy15098 53 LKVTTVDMQKPPPDFRDLYL 72 (92)
Q Consensus 53 f~VTTVD~krKP~~f~dL~p 72 (92)
|++.+-..+|.|+|+++++.
T Consensus 136 fd~~aG~~~rAP~w~~~~gL 155 (177)
T TIGR00696 136 FDVFSGLVKRAPRWLMRLGL 155 (177)
T ss_pred eeecccCcCcCCHHHHHhCc
Confidence 99999999999999999874
Done!