RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15098
(92 letters)
>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST
fold, metal transport; 1.70A {Drosophila melanogaster}
Length = 260
Score = 46.6 bits (110), Expect = 9e-08
Identities = 37/55 (67%), Positives = 38/55 (69%), Gaps = 10/55 (18%)
Query: 31 ASTIDGRRKGACLFCQEYFMDLL----------KVTTVDMQKPPPDFRDLYLLKK 75
ASTIDGRRKGACLFCQEYFMDL KVTTVDMQKPPPDFR +
Sbjct: 29 ASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATH 83
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 44.5 bits (105), Expect = 5e-07
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 34 IDGRRKGACLFCQEYFMDL------LKVTTVDMQKPPPDFRDLYLLKK 75
DG + G C F Q FM L VTTVD ++ + L +
Sbjct: 16 SDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGE 63
>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC,
GST fold, metal transport; 1.60A {Caenorhabditis
elegans}
Length = 291
Score = 43.7 bits (102), Expect = 1e-06
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 31 ASTIDGRRKGACLFCQEYFMDL----------LKVTTVDMQKPPPDFRDLY 71
AS ID RR GA LFCQE++M+L ++V TV++ L
Sbjct: 26 ASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSEAFKKNFLG 76
>2ahe_A Chloride intracellular channel protein 4;
glutathione-S-transferase superfamily, CLIC4, NCC27,
chloride ION channel, metal transport; 1.80A {Homo
sapiens} PDB: 2d2z_A
Length = 267
Score = 40.4 bits (94), Expect = 2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 33 TIDGRRKGACLFCQEYFMDLL------KVTTVDMQKPPPDFRDLYLLKK 75
DG G C F Q FM L VTTVD+++ P D ++L
Sbjct: 26 GSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTH 74
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 39.5 bits (92), Expect = 3e-05
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 34 IDGRRKGACLFCQEYFMDLL------KVTTVDMQKPPPDFRDLYLLKK 75
DG G C FCQ FM L VTTVDM + P + +DL
Sbjct: 22 SDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTN 69
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel,
nucleus, transport, gated channel; 1.95A {Homo sapiens}
PDB: 3kjy_A
Length = 250
Score = 38.5 bits (89), Expect = 7e-05
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 32 STIDGRRKGACLFCQEYFMDLL------KVTTVDMQKPPPDFRDLYLLKK 75
++ DG G C CQ FM LL +TTVD ++ P +D +
Sbjct: 32 ASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQ 81
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase,
hydrolase-hydrolase inhibitor complex; 1.30A {Homo
sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A
3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A*
3pd0_A 3itn_A 1qx3_A
Length = 250
Score = 29.3 bits (65), Expect = 0.15
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+D G C+ + F + M D L++TF L + V
Sbjct: 11 MDYPEMGLCIIINNKNFHK-----STGMTSRSGTDVDAANLRETFRNLKYEVRNKN 61
>3od5_A Caspase-6; caspase domain, apoptotic protease,
hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens}
PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 2wdp_A 3nkf_A
3s8e_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Length = 278
Score = 29.0 bits (64), Expect = 0.16
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+D RR+G L F E F + + + D L + F L F V
Sbjct: 16 MDHRRRGIALIFNHERFFW-----HLTLPERRGTCADRDNLTRRFSDLGFEVKCFN 66
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo
sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A
4ehl_A 1i3o_A
Length = 277
Score = 28.9 bits (64), Expect = 0.20
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+D G C+ + F + M D L++TF L + V
Sbjct: 39 MDYPEMGLCIIINNKNFHK-----STGMTSRSGTDVDAANLRETFRNLKYEVRNKN 89
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase
inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP:
c.17.1.1 PDB: 3sip_B
Length = 272
Score = 28.6 bits (63), Expect = 0.24
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
++ + +G + F E+F ++ D L K L F VT
Sbjct: 27 MNHKHRGMAIIFNHEHF------DIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP 76
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera
frugiperda}
Length = 310
Score = 28.2 bits (62), Expect = 0.37
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
++ + +G + F E+F ++ D L K L F VT
Sbjct: 55 MNHKHRGMAIIFNHEHF------DIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP 104
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease,
hydrol hydrolase inhibitor complex; 1.20A {Homo
sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A
2c2z_A 1qdu_A* 1f9e_A*
Length = 164
Score = 27.7 bits (61), Expect = 0.48
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPD--FRDLYLLKKTFWQLNFNVTGHR 88
+ + +G CL F + + D L TF +L+F + H
Sbjct: 18 MKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 75
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design,
radiation D tetrahedral intermediate, protease; 1.06A
{Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A*
2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A
1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A*
1rhj_A* ...
Length = 146
Score = 27.2 bits (60), Expect = 0.52
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+D G C+ + F + M D L++TF L + V
Sbjct: 11 MDYPEMGLCIIINNKNFHK-----STGMTSRSGTDVDAANLRETFRNLKYEVRNKN 61
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase,
apoptosis, hydrolas hydrolase inhibitor complex; 2.35A
{Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A
1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Length = 305
Score = 27.5 bits (60), Expect = 0.59
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 35 DGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+ + G C+ + F M +D L K F L F+V +
Sbjct: 65 NFEKLGKCIIINNKNFDK-----VTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 114
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing,
HOST- virus interaction, polymorphism, cytoplasm,
disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A
1i4e_B 2fun_B 2c2z_B*
Length = 271
Score = 27.1 bits (59), Expect = 0.79
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 34 IDGRRKGACL-FCQEYFMD--LLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+ + +G CL F ++ D L TF +L+F + H
Sbjct: 12 MKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 69
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Length = 259
Score = 26.6 bits (58), Expect = 1.1
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+ + +G L F E+F ++ D L + QL+F VT ++
Sbjct: 15 MRHKNRGMALIFNHEHF------EVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYK 64
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization,
active site conformation, hydrolysis/apoptosis complex;
2.50A {Drosophila melanogaster}
Length = 316
Score = 26.3 bits (57), Expect = 1.4
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 38 RKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+G L + D + + +D L F +LNF + +
Sbjct: 60 NRGVLLMVNIMDYPDQNR-------RRIGAEKDSKSLIHLFQELNFTIFPYG 104
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity,
apoptosis, hydrolase, protease protease; 2.05A {Homo
sapiens}
Length = 302
Score = 25.8 bits (56), Expect = 1.9
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 13/54 (24%)
Query: 38 RKGACL-FCQEYFMDL--LKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
R L C E F + VD+ + L ++V +
Sbjct: 59 RTRLALIICNEEFDSIPRRTGAEVDITG----------MTMLLQNLGYSVDVKK 102
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 25.2 bits (56), Expect = 3.1
Identities = 4/27 (14%), Positives = 8/27 (29%), Gaps = 7/27 (25%)
Query: 66 DFRDL-------YLLKKTFWQLNFNVT 85
DF + + K + L+
Sbjct: 8 DFSNRQARILYNKAIAKALFGLDIEYH 34
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease,
hydrolase-HY inhibitor complex; 1.65A {Homo sapiens}
SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A
3r7b_A 3r7n_A 3r7s_A
Length = 167
Score = 24.9 bits (54), Expect = 3.7
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+ R +G L +F +++ D L F L ++V
Sbjct: 28 LQSRPRGLALVLSNVHFTG-----EKELEFRSGGDVDHSTLVTLFKLLGYDVHVLC 78
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase
inhibition, caspase activation, dimerization; 2.40A
{Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Length = 277
Score = 25.1 bits (54), Expect = 4.4
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 34 IDGRRKGACL-FCQEYFMDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
+ G CL F ++ D L++ F L+F V
Sbjct: 16 LSMEPCGHCLIINNVNFCR-----ESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKG 66
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ;
1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A*
1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A*
2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A*
3d6h_A* 2hbz_A* 2hbr_A* ...
Length = 178
Score = 24.9 bits (54), Expect = 4.7
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 13/54 (24%)
Query: 38 RKGACL-FCQEYF--MDLLKVTTVDMQKPPPDFRDLYLLKKTFWQLNFNVTGHR 88
R L C E F + VD+ + L ++V +
Sbjct: 42 RTRLALIICNEEFDSIPRRTGAEVDITG----------MTMLLQNLGYSVDVKK 85
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis,
caspase, alternative splicing, HOST- virus interaction,
polymorphism, cytoplasm, disease mutation; 1.90A {Homo
sapiens} PDB: 3h13_A
Length = 272
Score = 24.3 bits (52), Expect = 8.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 69 DLYLLKKTFWQLNFNVTGHR 88
+ LL+ TF L + V
Sbjct: 55 ETELLRDTFTSLGYEVQKFL 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.455
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,475,452
Number of extensions: 72449
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 27
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)