BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy151
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
           Dna Polymerase Alpha In Complex With Its B Subunit
 pdb|3FLO|C Chain C, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
           Dna Polymerase Alpha In Complex With Its B Subunit
 pdb|3FLO|E Chain E, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
           Dna Polymerase Alpha In Complex With Its B Subunit
 pdb|3FLO|G Chain G, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
           Dna Polymerase Alpha In Complex With Its B Subunit
          Length = 460

 Score = 36.6 bits (83), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 31/89 (34%)

Query: 53  RLSRLASHLLQQQCYYPLIPPNVELPV------------DMECWELH-------AQLPV- 92
           RL R++ H+LQQ+ YYP+ P ++   +            DME  E         A L V 
Sbjct: 311 RLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVS 370

Query: 93  -----------TPHIMILPSDLRYFVKAL 110
                      +P IMI+PS+L++F + +
Sbjct: 371 YLGLTEFVGGFSPDIMIIPSELQHFARVV 399


>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
           From Agrobacterium Tumefaciens
 pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
           From Agrobacterium Tumefaciens
          Length = 388

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 44  FAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSD 102
            AA+ + +  LS L  H  Q   + P       L  DM+C E    LP  P + + PS+
Sbjct: 324 LAASLQASSTLSMLKGHEFQHSIFEP---NRRLLDGDMDCREGRYHLPSGPGLGVRPSE 379


>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
           Subgroup Member) From Agrobacterium Tumefaciens (Target
           Efi-502088) With Bound Mg And Formate
 pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
           Subgroup Member) From Agrobacterium Tumefaciens (Target
           Efi-502088) With Bound Mg And Formate
          Length = 408

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 44  FAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSD 102
            AA+ + +  LS L  H  Q   + P       L  DM+C E    LP  P + + PS+
Sbjct: 344 LAASLQASSTLSMLKGHEFQHSIFEP---NRRLLDGDMDCREGRYHLPSGPGLGVRPSE 399


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,896,668
Number of Sequences: 62578
Number of extensions: 93364
Number of successful extensions: 127
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 6
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)