BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy151
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2
Length = 598
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 67/91 (73%)
Query: 18 PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
P L I+GV+ G+TS D+L HLG EE +++ +DR SR+ H+L Q+ YYPL PP ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518
Query: 78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
+D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549
>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1
Length = 604
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 3 SLNKLLSEDSDSK---PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLAS 59
S + LL ED P L I+GV+ G+TS D+L H+G EE +++ +DR SR+
Sbjct: 443 SCSDLLREDKKRVRLVSEPCTLSINGVIFGLTSTDLLFHMGAEEISSSSGTSDRFSRILR 502
Query: 60 HLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
H+L Q+ YYPL PP ++ +D E + L+AQLPVTP + I PS+LRYFVK
Sbjct: 503 HILTQRSYYPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVK 551
>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2
SV=2
Length = 600
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 18 PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
P L I+GV+ G+TS D+L H+G EE ++ +DR SR+ H+L Q+ YYPL PP+ ++
Sbjct: 459 PCNLSINGVMFGLTSTDLLFHIGAEEICSSSGTSDRFSRILKHILTQRSYYPLYPPHEDM 518
Query: 78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
+D E + +AQLPVTP + I+PS+LRYFVK
Sbjct: 519 AIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549
>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2
Length = 600
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 18 PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
P L I+GV+ G+TS D+L H+G EE ++ +DR SR+ H+L Q+ YYPL PP+ ++
Sbjct: 459 PCSLSINGVMFGLTSTDLLFHIGAEEIFSSSGTSDRFSRVLKHILTQRSYYPLYPPHEDM 518
Query: 78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
+D E + +AQLPVTP + I+PS+LRYFVK
Sbjct: 519 AIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549
>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pol12 PE=1 SV=1
Length = 574
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 16 PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
P P + I+ VV GV++ D+L+H REE P + +RL SH+L Q+ +YPL P
Sbjct: 421 PNPCMFSINDVVFGVSTNDILLHTSREELFRLPSHGNLFARLVSHVLHQRHFYPLFPGGS 480
Query: 76 -----ELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
+D+ +L L P I+ILPSDLRYFVK
Sbjct: 481 LEKCNPSNLDIAHLKLGEFLNTMPDILILPSDLRYFVK 518
>sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster
GN=DNApol-alpha73 PE=1 SV=2
Length = 609
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 16 PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPP-N 74
P P ++D+ G +GVTS DV+ HL EFA +R+ R +HL Q +YPL PP +
Sbjct: 470 PDPSLVDLDGFTLGVTSTDVVDHLLSHEFAV--NAGERMHRAINHLFHQGSFYPLYPPAD 527
Query: 75 VELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
++ D + +AQL P+++ILPSD R+F++
Sbjct: 528 EDMAYDSQLALKYAQLKQLPNVLILPSDQRHFIR 561
>sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1
PE=3 SV=3
Length = 581
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 18 PWVLDISGVVVGVTSVDVLMHLGREEF--AAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
P + ISGV V +TS + + L EF +A E DR++RL+SHLL QQC YPL P
Sbjct: 441 PCIFRISGVEVAMTSSEPIQALSNTEFHRSANQENIDRVARLSSHLLTQQCMYPLEP--T 498
Query: 76 ELPVDMECWELHAQLPVTPHIMILPSDL 103
E+P M + TPHI+ P+ L
Sbjct: 499 EVPASMGDLLDVCCIGSTPHIVFAPTKL 526
>sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=POL12 PE=1 SV=1
Length = 705
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 31/124 (25%)
Query: 18 PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
P I+ + G ++VD L RL R++ H+LQQ+ YYP+ P ++
Sbjct: 521 PSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRT 580
Query: 78 PV------------DMECWELH-------AQLPV------------TPHIMILPSDLRYF 106
+ DME E A L V +P IMI+PS+L++F
Sbjct: 581 RIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHF 640
Query: 107 VKAL 110
+ +
Sbjct: 641 ARVV 644
>sp|Q96L46|CPNS2_HUMAN Calpain small subunit 2 OS=Homo sapiens GN=CAPNS2 PE=2 SV=2
Length = 248
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 1 MSSLNKLLSEDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEF 44
M+ LNK+LS+ D K + LD +V V D LG EEF
Sbjct: 101 MNILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEF 144
>sp|Q9K8A0|MUTS2_BACHD MutS2 protein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=mutS2 PE=3 SV=1
Length = 785
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 32 SVDVLMHL----GREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELH 87
+VDVL L R + A T + +LL +Q +PLIP + +P+D+E +
Sbjct: 269 NVDVLAELDFIMARAHYGKAIRATQPILNNRGYLLIKQGRHPLIPDDEIVPIDIELGHSY 328
Query: 88 AQLPVT 93
+ L +T
Sbjct: 329 SSLVIT 334
>sp|Q9D7J7|CPNS2_MOUSE Calpain small subunit 2 OS=Mus musculus GN=Capns2 PE=2 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 1 MSSLNKLLSEDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEF 44
M+ LNK+LS+ + K + LD +V V D LG EEF
Sbjct: 100 MNILNKVLSKHKELKTEGFSLDTCRSIVSVMDSDTTGKLGFEEF 143
>sp|C5BDQ4|ARNB_EDWI9 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
OS=Edwardsiella ictaluri (strain 93-146) GN=arnB PE=3
SV=1
Length = 381
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 34 DVLMHLGREEFAAAPEMTDRLSRLASHLLQQ--QCYYPLIPPNVELPVDMECWEL 86
D+ + R + A PE+ R +RLA++ LQQ Q P P N W L
Sbjct: 240 DINAAIARVQLAKLPELNARRARLAAYYLQQLAQHQLPFSPLNTPEWPHQHAWHL 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,888,032
Number of Sequences: 539616
Number of extensions: 1548710
Number of successful extensions: 3371
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3353
Number of HSP's gapped (non-prelim): 18
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)