Query psy151
Match_columns 110
No_of_seqs 103 out of 211
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:35:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1625|consensus 100.0 3.6E-35 7.9E-40 247.4 7.9 105 5-110 443-552 (600)
2 COG5214 POL12 DNA polymerase a 100.0 2.8E-31 6.1E-36 219.3 4.1 108 3-110 408-525 (581)
3 PF04042 DNA_pol_E_B: DNA poly 99.9 7.5E-24 1.6E-28 157.1 3.0 93 14-108 117-209 (209)
4 cd07386 MPP_DNA_pol_II_small_a 98.2 2.3E-06 5E-11 65.1 5.0 85 14-108 118-206 (243)
5 PTZ00235 DNA polymerase epsilo 97.0 0.0043 9.3E-08 50.0 7.8 91 14-108 157-250 (291)
6 PRK04036 DNA polymerase II sma 96.7 0.0022 4.7E-08 54.5 4.5 83 14-102 367-449 (504)
7 cd07387 MPP_PolD2_C PolD2 (DNA 96.1 0.014 3E-07 46.0 5.6 79 14-102 132-212 (257)
8 KOG3818|consensus 95.5 0.056 1.2E-06 46.3 6.9 102 4-108 384-487 (525)
9 COG1311 HYS2 Archaeal DNA poly 92.3 0.41 8.8E-06 41.2 6.0 81 14-100 345-425 (481)
10 PF13075 DUF3939: Protein of u 32.4 99 0.0021 22.6 4.3 54 48-101 77-130 (140)
11 KOG1795|consensus 30.6 27 0.00058 34.4 1.3 20 51-70 869-888 (2321)
12 PF13494 DUF4119: Domain of un 28.5 33 0.00072 23.5 1.2 18 51-68 66-83 (96)
13 PRK14127 cell division protein 25.6 57 0.0012 22.7 2.0 13 29-41 84-96 (109)
14 PF03323 GerA: Bacillus/Clostr 24.7 70 0.0015 27.3 2.7 79 30-108 179-261 (470)
15 PRK09555 feoA ferrous iron tra 24.3 1E+02 0.0022 19.6 2.8 21 14-34 44-64 (74)
16 KOG2732|consensus 24.0 73 0.0016 27.3 2.7 81 14-102 309-389 (435)
17 KOG1233|consensus 23.0 42 0.00091 29.1 1.1 59 30-105 114-172 (613)
18 TIGR00006 S-adenosyl-methyltra 22.2 55 0.0012 26.5 1.6 42 29-70 131-175 (305)
19 PF02495 7kD_coat: 7kD viral c 21.6 85 0.0018 19.0 2.0 20 15-34 23-42 (59)
20 PF07836 DmpG_comm: DmpG-like 21.5 62 0.0013 20.7 1.4 32 28-61 32-63 (66)
21 COG1918 FeoA Fe2+ transport sy 21.4 1.1E+02 0.0025 19.7 2.7 21 14-34 45-65 (75)
No 1
>KOG1625|consensus
Probab=100.00 E-value=3.6e-35 Score=247.37 Aligned_cols=105 Identities=49% Similarity=0.769 Sum_probs=96.8
Q ss_pred hhhccCC-CC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcC--CCCchHHHHHHHhHhcccccccCCCCCCCccC
Q psy151 5 NKLLSED-SD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAA--PEMTDRLSRLASHLLQQQCYYPLIPPNVELPV 79 (110)
Q Consensus 5 ~~~~~~~-~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~--~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~l 79 (110)
++.++.+ +| |++|||.|+|||+.||+||+|+++||++||++++ .+++|||+|+.+|||+|||||||||| +++++
T Consensus 443 ~~~~~~~~~~l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~~~~~dR~~Rls~HlL~QrsfYPL~PP-~dl~~ 521 (600)
T KOG1625|consen 443 RNRLSDEKKNLKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNALQSNGDRLARLSSHLLTQRSFYPLFPP-EDLPV 521 (600)
T ss_pred hhhccCcccceEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCCCcchHHHHHHHHHHhhcccccccCCc-hhcch
Confidence 4455555 45 9999999999999999999999999999999995 56789999999999999999999997 68999
Q ss_pred ChhhHHhhcCCCCCCcEEEcCCCCCcccccC
Q psy151 80 DMECWELHAQLPVTPHIMILPSDLRYFVKAL 110 (110)
Q Consensus 80 D~~~~~~~~~~~~~PDilI~PS~l~~F~K~V 110 (110)
|++.+...++++.+|||||+||+||||+|+|
T Consensus 522 s~~~~~~~~~~~~~PdIlIlPSdLr~Fvk~V 552 (600)
T KOG1625|consen 522 SYSLLLKYAQIGSTPDILILPSDLRHFVKDV 552 (600)
T ss_pred hhhhHHHHhccCCCCcEEEechhhHHHHHhc
Confidence 9999999999999999999999999999987
No 2
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.8e-31 Score=219.29 Aligned_cols=108 Identities=27% Similarity=0.446 Sum_probs=99.8
Q ss_pred hhhhhccCCCC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcC--CCCchHHHHHHHhHhcccccccCCCCCC---
Q psy151 3 SLNKLLSEDSD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAA--PEMTDRLSRLASHLLQQQCYYPLIPPNV--- 75 (110)
Q Consensus 3 ~~~~~~~~~~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~--~~~~drl~Rl~~hll~QrsfYPl~P~~~--- 75 (110)
-.|+.+++|+| |.+|||.|.|||+.||++|.|++.|+++||+.++ ..++||++|+..|+|+||+|||+||.+.
T Consensus 408 ~~r~al~lp~nfkC~~NPc~F~INei~fg~Ss~Dt~l~~s~eE~f~~~l~s~g~rl~Ris~H~l~QR~fyPvFPg~~~~k 487 (581)
T COG5214 408 IGRNALRLPSNFKCTGNPCEFFINEILFGISSLDTPLEISSEECFHDSLLSGGDRLGRISYHLLFQRTFYPVFPGGSLEK 487 (581)
T ss_pred cchhhhcCCccccccCCcceeEeeeeEEEeccCCchhhccHHHHhccccccccchHHHHHHHHHhhceeecccCCccccc
Confidence 45889999999 9999999999999999999999999999999985 5678999999999999999999999752
Q ss_pred --CccCChhhHHhhcCCC-CCCcEEEcCCCCCcccccC
Q psy151 76 --ELPVDMECWELHAQLP-VTPHIMILPSDLRYFVKAL 110 (110)
Q Consensus 76 --~~~lD~~~~~~~~~~~-~~PDilI~PS~l~~F~K~V 110 (110)
...+|+.++...++++ ..|||+|+||+|++|+|+|
T Consensus 488 ~~ps~ldv~~l~l~Ef~~~t~PDI~IvpS~L~hF~r~V 525 (581)
T COG5214 488 CNPSSLDVVSLSLPEFMSMTAPDIYIVPSKLKHFCRDV 525 (581)
T ss_pred cCccccceEEecchhhhccCCCcEEEehHHHHHHHHhc
Confidence 2679999999888887 9999999999999999987
No 3
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=99.88 E-value=7.5e-24 Score=157.12 Aligned_cols=93 Identities=40% Similarity=0.560 Sum_probs=72.7
Q ss_pred CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151 14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT 93 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~ 93 (110)
|++|||+|++||+.||+++.|++++|+++|+.++....|++.|+++|||+||+|||++|.. ..++++.+.+. ..+..+
T Consensus 117 ~~sNP~~~~i~~~~i~~~s~d~~~~l~~~~~~~~~~~~~~~~~l~~~il~q~hl~P~~pd~-~~~~~~~~~~~-l~l~~~ 194 (209)
T PF04042_consen 117 FVSNPCRISINGQEIGVTSGDILDDLRRYEISKSSSSEDRIERLMETILQQRHLYPLYPDT-LPPIPWSYDDP-LVLDPT 194 (209)
T ss_dssp E--CSEEEEETTEEEEE-SSHHHHHHHHCCESHHHHHS-HHHHHHHHHHHCTBS-TTSSE---B-GGGGGCGC-TCGCS-
T ss_pred EeCCCeEEEEeCCcEEEECCcHHHHHHhhccCCCcchhHHHHHHHHHHHHhhcccCCCCCC-ccccccCcCCC-cccCCC
Confidence 9999999999999999999999999999999877655799999999999999999999932 34566655443 456889
Q ss_pred CcEEEcCCCCCcccc
Q psy151 94 PHIMILPSDLRYFVK 108 (110)
Q Consensus 94 PDilI~PS~l~~F~K 108 (110)
|||+|+|+++++|+|
T Consensus 195 Pdili~~~~~~~F~~ 209 (209)
T PF04042_consen 195 PDILILPSDLPPFVK 209 (209)
T ss_dssp -SEEEEEESCSSEE-
T ss_pred CcEEEECCCCcCcCC
Confidence 999999999999987
No 4
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.20 E-value=2.3e-06 Score=65.09 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=60.1
Q ss_pred CCCCCcEEEECCeEEEeec----hHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcC
Q psy151 14 SKPRPWVLDISGVVVGVTS----VDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQ 89 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts----~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~ 89 (110)
+++||+.+.+||..|-++. .|++..+. ....++..+++++++.||+++|++|....+.-+ + .....
T Consensus 118 ~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~-------~~~~~~~~~~~~~~l~~~hl~P~~~~~~~~~~~--~-~~~~~ 187 (243)
T cd07386 118 FVSNPALVKIHGVDVLIYHGRSIDDVVKLIP-------GLSYDKPGKAMEELLKRRHLAPIYGGRTPIAPE--P-EDYLV 187 (243)
T ss_pred EeCCCCEEEECCEEEEEECCCCHHHHHHhCC-------CCCcccHHHHHHHHHhhcccCCCCCCCEeeCCC--C-CCCEE
Confidence 8999999999999886665 55554432 112468899999999999999999974322111 1 22344
Q ss_pred CCCCCcEEEcCCCCCcccc
Q psy151 90 LPVTPHIMILPSDLRYFVK 108 (110)
Q Consensus 90 ~~~~PDilI~PS~l~~F~K 108 (110)
+...||++|..-.-.++.+
T Consensus 188 ~~~~p~vii~Gh~h~~~~~ 206 (243)
T cd07386 188 IDEVPDILHTGHVHVYGVG 206 (243)
T ss_pred ecCCCCEEEECCCCchHhE
Confidence 6679999999877655543
No 5
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=96.97 E-value=0.0043 Score=49.98 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=68.4
Q ss_pred CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCC--CCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCC
Q psy151 14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAP--EMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLP 91 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~--~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~ 91 (110)
|.+|||.++.=+..|-+.=-|+...|.+.-+...+ ...|--..+++-|+.|.+..|+ |....+.-|+.| .+.+-
T Consensus 157 ~aSNPcRI~y~sqEIVifRdDl~~~L~r~~~i~~~~~~~~d~~~~lvkTIldQ~HL~Pl-~~~~pI~W~yD~---aL~Ly 232 (291)
T PTZ00235 157 FATNPCRIRHLSKKMIFFRHDILNDLIWSSTINATNNERNNLQNILVSTIVGQSHIYPI-PHDNRILKRYSP---FLFLY 232 (291)
T ss_pred EecCCcEEEecCceEEEEeHHHHHHHhhhccCCCCCccchhHHHHHHHhhhcccccCCC-ccCCcccccccc---ceecc
Confidence 99999999999999999999999999976532222 2234556899999999999999 444445444433 46678
Q ss_pred CCCcEEEcCCC-CCcccc
Q psy151 92 VTPHIMILPSD-LRYFVK 108 (110)
Q Consensus 92 ~~PDilI~PS~-l~~F~K 108 (110)
..||+||+.-. ..+|+|
T Consensus 233 PlPd~ivL~D~s~~~~~~ 250 (291)
T PTZ00235 233 PLPHFICVCDNSCNSFIS 250 (291)
T ss_pred CCCCEEEEecCCCCccce
Confidence 89999999755 566554
No 6
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.71 E-value=0.0022 Score=54.51 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=58.0
Q ss_pred CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151 14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT 93 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~ 93 (110)
+++||+.+.++|..|-++.-|.+.++.+.- .. ...++-..+.++++.||+..|.+|.. .++-.. ......+...
T Consensus 367 ~lsNP~~i~l~G~~iLl~HG~~idDl~~~i-~~--~s~~~p~~~m~~~l~~rHlaPt~p~~--~~~~p~-~~D~lvi~~~ 440 (504)
T PRK04036 367 FVSNPALVNLHGVDVLIYHGRSIDDVISLI-PG--ASYEKPGKAMEELLKRRHLAPIYGGR--TPIAPE-KEDYLVIDEV 440 (504)
T ss_pred EecCCeEEEECCEEEEEECCCCHHHHHhhc-cc--ccccCHHHHHHHHHHhcccCCCCCCC--EEeCcC-CCCCEEEecC
Confidence 899999999999999999866655554321 11 11245577899999999999999974 333332 2333455667
Q ss_pred CcEEEcCCC
Q psy151 94 PHIMILPSD 102 (110)
Q Consensus 94 PDilI~PS~ 102 (110)
||++++.-.
T Consensus 441 Pdv~~~GH~ 449 (504)
T PRK04036 441 PDIFHTGHV 449 (504)
T ss_pred CCEEEeCCC
Confidence 999998644
No 7
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.12 E-value=0.014 Score=46.01 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=55.5
Q ss_pred CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCC-ccC-ChhhHHhhcCCC
Q psy151 14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVE-LPV-DMECWELHAQLP 91 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~-~~l-D~~~~~~~~~~~ 91 (110)
+++||+.|+|||+.|-.||-..+.+|.+.- + ..++++ +.+.+|+=|+.-|.+|-... +|. |- ...-++
T Consensus 132 ~vtNP~~~~i~g~~vLgtsGqni~Di~ky~----~-~~~~l~-~me~~L~wrHlaPTaPDTL~~yP~~~~----Dpfvi~ 201 (257)
T cd07387 132 LVTNPYEFSIDGVRVLGTSGQNVDDILKYS----S-LESRLD-ILERTLKWRHIAPTAPDTLWCYPFTDR----DPFILE 201 (257)
T ss_pred EeCCCeEEEECCEEEEEECCCCHHHHHHhC----C-CCCHHH-HHHHHHHhcccCCCCCCccccccCCCC----Cceeec
Confidence 899999999999999999988888887542 1 134433 45556777999999996421 232 21 123456
Q ss_pred CCCcEEEcCCC
Q psy151 92 VTPHIMILPSD 102 (110)
Q Consensus 92 ~~PDilI~PS~ 102 (110)
..|||+++.-.
T Consensus 202 ~~PhVyf~Gnq 212 (257)
T cd07387 202 ECPHVYFAGNQ 212 (257)
T ss_pred CCCCEEEeCCC
Confidence 78999998643
No 8
>KOG3818|consensus
Probab=95.46 E-value=0.056 Score=46.29 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=78.0
Q ss_pred hhhhccCCCC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCCh
Q psy151 4 LNKLLSEDSD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDM 81 (110)
Q Consensus 4 ~~~~~~~~~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~ 81 (110)
.+++....+| |-+|||.+.----.|-|.-.|+.....++-+.-+....--=.++++-||.|.+.-|+-+....+--|+
T Consensus 384 ~~~i~kv~~~tvfasNPcRIqy~sQEIvVfR~DL~~kfcRn~l~Fp~~~~qipq~~vkTIL~QgHLsP~p~~~~PV~WD~ 463 (525)
T KOG3818|consen 384 TKHISKVCKNTVFASNPCRIQYCSQEIVVFRDDLSGKFCRNSLNFPITVEQIPQHLVKTILDQGHLSPFPQHIRPVLWDF 463 (525)
T ss_pred HHHHHhhcCCceeccCCeeeEeecceEEEEhHhhhhHHhhccccCCCcHHHHHHHHHHHHhhccccCCCccccCccccCc
Confidence 4667777887 99999999998888888999999999998775443333345679999999999999876655565566
Q ss_pred hhHHhhcCCCCCCcEEEcCCCCCcccc
Q psy151 82 ECWELHAQLPVTPHIMILPSDLRYFVK 108 (110)
Q Consensus 82 ~~~~~~~~~~~~PDilI~PS~l~~F~K 108 (110)
+|. +.+--.||.|++--....|..
T Consensus 464 D~a---Lsl~PlPdlmvl~Ds~~sf~~ 487 (525)
T KOG3818|consen 464 DHA---LSLYPLPDLMVLADSFSSFFD 487 (525)
T ss_pred ccc---eEeccCcceEEeecccccccc
Confidence 552 445568999999876666643
No 9
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=92.29 E-value=0.41 Score=41.16 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=55.1
Q ss_pred CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151 14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT 93 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~ 93 (110)
+++||+.++++|+-|=+..-=-+.+|.+. . ...+-|....+.+-+|.=|+.-|.||.. +++-... +.+.-+..-
T Consensus 345 ~v~NP~~~~l~G~~vL~~hG~sidDii~~--v-P~~~~~~~~~ame~lLk~rHlaPtygg~--~p~aP~~-kD~lVIeev 418 (481)
T COG1311 345 FVSNPALVSLHGVDVLIYHGRSIDDIIKL--V-PGADYDSPLKAMEELLKRRHLAPTYGGT--LPIAPET-KDYLVIEEV 418 (481)
T ss_pred ecCCCcEEEECCEEEEEecCCCHHHHHhh--C-CCCCccchHHHHHHHHHhcccCCCCCCc--cccccCC-cCceeeccC
Confidence 99999999999987755543333333321 1 1123467777888889999999999984 4443333 445567788
Q ss_pred CcEEEcC
Q psy151 94 PHIMILP 100 (110)
Q Consensus 94 PDilI~P 100 (110)
|||+++.
T Consensus 419 PDv~~~G 425 (481)
T COG1311 419 PDVFHTG 425 (481)
T ss_pred CcEEEEc
Confidence 9999875
No 10
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=32.43 E-value=99 Score=22.65 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=41.7
Q ss_pred CCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCCCcEEEcCC
Q psy151 48 PEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPS 101 (110)
Q Consensus 48 ~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~PDilI~PS 101 (110)
+..-|+..+++.|-..|.--||+-|.++...+|+.+++.++.-.-.-+.+|..-
T Consensus 77 p~~iD~VQ~AVD~Y~~e~~~lPi~~~~~~~~Vd~~kL~~YL~E~P~~~~Yit~~ 130 (140)
T PF13075_consen 77 PKEIDKVQKAVDQYVKETGKLPIIPYDELRQVDFFKLGHYLDELPKRPLYITDE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCcCCCccceeeHHHHHHHHhcCCCCceEEecc
Confidence 344699999999999999999999999888899999866544333335666543
No 11
>KOG1795|consensus
Probab=30.62 E-value=27 Score=34.43 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=18.1
Q ss_pred chHHHHHHHhHhcccccccC
Q psy151 51 TDRLSRLASHLLQQQCYYPL 70 (110)
Q Consensus 51 ~drl~Rl~~hll~QrsfYPl 70 (110)
-|.++||-+|||+||+|=++
T Consensus 869 he~l~rIKr~LLTqR~FKeV 888 (2321)
T KOG1795|consen 869 HEALSRIKRHLLTQRSFKEV 888 (2321)
T ss_pred HHHHHHHHHHHHhhhhhhhh
Confidence 48999999999999999775
No 12
>PF13494 DUF4119: Domain of unknown function, B. Theta Gene description (DUF4119)
Probab=28.46 E-value=33 Score=23.48 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=16.4
Q ss_pred chHHHHHHHhHhcccccc
Q psy151 51 TDRLSRLASHLLQQQCYY 68 (110)
Q Consensus 51 ~drl~Rl~~hll~QrsfY 68 (110)
+-.+..||++|-.||.||
T Consensus 66 ~KkL~~LA~yI~d~~ilY 83 (96)
T PF13494_consen 66 SKKLKDLAEYIYDWRILY 83 (96)
T ss_pred HHHHHHHHHHHhhceEEE
Confidence 467999999999999998
No 13
>PRK14127 cell division protein GpsB; Provisional
Probab=25.61 E-value=57 Score=22.73 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.2
Q ss_pred EeechHHHHHHhH
Q psy151 29 GVTSVDVLMHLGR 41 (110)
Q Consensus 29 gvts~Dil~~L~~ 41 (110)
|.|+.|||+.|++
T Consensus 84 ~~tn~DiLKRls~ 96 (109)
T PRK14127 84 SATNYDILKRLSN 96 (109)
T ss_pred CcchHHHHHHHHH
Confidence 6799999976664
No 14
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=24.74 E-value=70 Score=27.28 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=42.7
Q ss_pred eechHHHHHHhHHHhhcCCCCchHHHHHHHhHhccc-ccccCCCCCCCccCChhhHHhh---cCCCCCCcEEEcCCCCCc
Q psy151 30 VTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQ-CYYPLIPPNVELPVDMECWELH---AQLPVTPHIMILPSDLRY 105 (110)
Q Consensus 30 vts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~Qr-sfYPl~P~~~~~~lD~~~~~~~---~~~~~~PDilI~PS~l~~ 105 (110)
+.+-|++.++++.--.-.-..---.+.+-+.|-.+. |.||.+-..|+--.=.+++.++ ...+-+|-.||+|+.+-.
T Consensus 179 ia~~~~v~~v~~rl~~i~~d~i~~~~~lee~i~~~~~s~FP~~~~TERPD~~~~~L~eGrv~ilvDgsP~~li~P~~f~~ 258 (470)
T PF03323_consen 179 IADPEIVQEVKQRLESIKIDGILDSGYLEELIEDNPYSPFPQVQYTERPDRAAASLLEGRVAILVDGSPFALIVPTTFFD 258 (470)
T ss_pred CCCHHHHHHHHHHHhcCCcceecChhHHHHHhcCCCCCccCCCCccCCHHHHHHHHhCCcEEEEECCCCeEEEEhHHHHH
Confidence 467788888876422111110111233334444443 6777777666541111222222 356889999999998766
Q ss_pred ccc
Q psy151 106 FVK 108 (110)
Q Consensus 106 F~K 108 (110)
|.+
T Consensus 259 ~~q 261 (470)
T PF03323_consen 259 FFQ 261 (470)
T ss_pred HhC
Confidence 654
No 15
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=24.27 E-value=1e+02 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=18.1
Q ss_pred CCCCCcEEEECCeEEEeechH
Q psy151 14 SKPRPWVLDISGVVVGVTSVD 34 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~D 34 (110)
-+.+|..++++|..|++...|
T Consensus 44 P~gdPi~i~v~g~~iaLR~~e 64 (74)
T PRK09555 44 PLGDPIHIETRRVSLVLRKKD 64 (74)
T ss_pred CCCCCEEEEECCEEEEecHHH
Confidence 467999999999999987655
No 16
>KOG2732|consensus
Probab=23.97 E-value=73 Score=27.32 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=50.4
Q ss_pred CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151 14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT 93 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~ 93 (110)
.++||-.|++||+.|+-||-.-+.+|.+--.. .++++.+- ..+.=|+--|--|-... ++-++. +.-.-++..
T Consensus 309 ~vTNPy~~~ld~~~vl~tSGqNvsDl~ry~~~-----~s~ld~le-~tlkw~HvaPTaPDTL~-cyPfte-kDPFv~~~~ 380 (435)
T KOG2732|consen 309 LVTNPYEFSLDGARVLGTSGQNVSDLLRYSSK-----KSGLDALE-NTLKWGHVAPTAPDTLW-CYPFTE-KDPFVMDEC 380 (435)
T ss_pred cccCceEEEEcCEEEEecCCccHHHHhhhcch-----hhHHHHHh-hhheeccccCCCCCccc-cccccc-CCCeeecCC
Confidence 79999999999999999998888777754321 24454443 34444566676554211 111111 011346789
Q ss_pred CcEEEcCCC
Q psy151 94 PHIMILPSD 102 (110)
Q Consensus 94 PDilI~PS~ 102 (110)
||++++.-.
T Consensus 381 Phvy~~GNq 389 (435)
T KOG2732|consen 381 PHVYIVGNQ 389 (435)
T ss_pred CeEEEecCC
Confidence 999998643
No 17
>KOG1233|consensus
Probab=23.04 E-value=42 Score=29.13 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=40.7
Q ss_pred eechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCCCcEEEcCCCCCc
Q psy151 30 VTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRY 105 (110)
Q Consensus 30 vts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~PDilI~PS~l~~ 105 (110)
|-+.|+|..|+...++-+.++.||+-|.-.|-|+ |.=.+.+ ..++..|||.+-|..-..
T Consensus 114 VeNedflh~Lket~isyS~Ea~dRl~R~HGhtlh----------------di~~Lre-gkf~RiPDiVvWP~chde 172 (613)
T KOG1233|consen 114 VENEDFLHFLKETKISYSNEARDRLMRGHGHTLH----------------DIINLRE-GKFPRIPDIVVWPKCHDE 172 (613)
T ss_pred ccchHHHHHHHhccCccchhHHHHHHhhcCchHH----------------HHHHHhc-CccCCCCceEecccchHH
Confidence 6688999999977777667777888887666443 2222222 567888999988865433
No 18
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=22.22 E-value=55 Score=26.52 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=32.8
Q ss_pred EeechHHHHHHhHHHhhc---CCCCchHHHHHHHhHhcccccccC
Q psy151 29 GVTSVDVLMHLGREEFAA---APEMTDRLSRLASHLLQQQCYYPL 70 (110)
Q Consensus 29 gvts~Dil~~L~~~ei~~---~~~~~drl~Rl~~hll~QrsfYPl 70 (110)
|+|..|+|...+.+|+.+ .-+....=.|+|+.|+++|.--|+
T Consensus 131 ~~tA~~~ln~~~e~~L~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i 175 (305)
T TIGR00006 131 KLSAAEILNTYSEEDLERILKKYGEEKFSKRIARAIVERRKKKPI 175 (305)
T ss_pred CCCHHHHHhhCCHHHHHHHHHHhcCcchHHHHHHHHHHHHhcCCC
Confidence 789999999999999864 234345677899999999975554
No 19
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=21.61 E-value=85 Score=19.01 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCCCcEEEECCeEEEeechH
Q psy151 15 KPRPWVLDISGVVVGVTSVD 34 (110)
Q Consensus 15 ~~NP~~~~iN~~~igvts~D 34 (110)
-+++|++.|+|-.+=++++.
T Consensus 23 ~~~~C~I~ItGeSv~I~gC~ 42 (59)
T PF02495_consen 23 SSPSCVIVITGESVTISGCE 42 (59)
T ss_pred CCCCcEEEEeCcEEEEECCC
Confidence 57999999999888777763
No 20
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=21.49 E-value=62 Score=20.73 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=21.9
Q ss_pred EEeechHHHHHHhHHHhhcCCCCchHHHHHHHhH
Q psy151 28 VGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHL 61 (110)
Q Consensus 28 igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hl 61 (110)
+||..-|++.++++.....+. +|.+-.++..|
T Consensus 32 ygVd~r~il~elgrR~~VgGQ--ED~I~dvA~~L 63 (66)
T PF07836_consen 32 YGVDPRDILVELGRRKLVGGQ--EDMIIDVALEL 63 (66)
T ss_dssp HT--HHHHHHHHHHCT--TT---THHHHHHHHHH
T ss_pred hCcCHHHHHHHHhcccccCch--HHHHHHHHHHH
Confidence 578889999999988776555 48888888766
No 21
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=21.40 E-value=1.1e+02 Score=19.67 Aligned_cols=21 Identities=10% Similarity=0.310 Sum_probs=18.0
Q ss_pred CCCCCcEEEECCeEEEeechH
Q psy151 14 SKPRPWVLDISGVVVGVTSVD 34 (110)
Q Consensus 14 ~~~NP~~~~iN~~~igvts~D 34 (110)
-+.+|+.+.+++..|++-..|
T Consensus 45 plgdPi~v~v~g~~~aLRr~e 65 (75)
T COG1918 45 PLGDPILVEVRGTRLALRKGE 65 (75)
T ss_pred CCCCCEEEEECCEEEEEcccc
Confidence 567999999999999987655
Done!