Query psy151
Match_columns 110
No_of_seqs 103 out of 211
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:36:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flo_A DNA polymerase alpha su 100.0 3.4E-32 1.1E-36 225.6 4.7 104 5-110 260-399 (460)
2 3e0j_A DNA polymerase subunit 97.0 0.0013 4.3E-08 54.8 6.6 80 11-100 329-412 (476)
3 1ckk_B Camkk, protein (RAT Ca2 28.1 25 0.00085 17.9 1.2 12 57-68 12-23 (26)
4 2vfx_A Mitotic spindle assembl 25.7 27 0.00091 25.4 1.4 18 52-69 23-40 (206)
5 3abd_A Mitotic spindle assembl 23.1 32 0.0011 25.4 1.4 18 52-69 37-54 (227)
6 1ckm_A MRNA capping enzyme; nu 21.5 1.1E+02 0.0036 23.5 4.2 26 8-33 6-31 (330)
7 4aez_B MAD2, mitotic spindle c 20.0 41 0.0014 24.6 1.5 18 52-69 21-38 (203)
8 4dxr_B Nesprin-1; beta-sandwic 17.7 29 0.00099 18.8 0.1 6 65-70 20-25 (35)
9 1iq5_B Ca2+/calmodulin depende 17.6 44 0.0015 17.1 0.8 12 57-68 12-23 (27)
10 3dfz_A SIRC, precorrin-2 dehyd 17.0 1.8E+02 0.006 21.1 4.4 31 15-45 129-162 (223)
No 1
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-32 Score=225.58 Aligned_cols=104 Identities=29% Similarity=0.510 Sum_probs=91.0
Q ss_pred hhhccCCC-C--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCC--CCchHHHHHHHhHhcccccccCCCCCCC---
Q psy151 5 NKLLSEDS-D--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAP--EMTDRLSRLASHLLQQQCYYPLIPPNVE--- 76 (110)
Q Consensus 5 ~~~~~~~~-n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~--~~~drl~Rl~~hll~QrsfYPl~P~~~~--- 76 (110)
+|.+++++ | |++|||+|+|||+.||+||.|+++||+ |+.+++ .++||++|+|+|||+|||||||||++.+
T Consensus 260 ~k~l~l~k~nv~~~sNPc~~~in~v~igvss~Dil~~L~--e~~~~~~~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~ 337 (460)
T 3flo_A 260 RKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLK--EVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRI 337 (460)
T ss_dssp TTTTTCCTTTEEECCBSEEEEETTEEEEECCSCHHHHCC--CEEECHHHHHSCHHHHHHHHHHHHTBSCCCSSCCEEC--
T ss_pred hhhhcCCcccEEEeCCCEEEEECCEEEEEEcHHHHHHHH--HhhcCCCCccccHHHHHHHHHhhcCcccCcCCCcccccc
Confidence 46678888 8 999999999999999999999999997 455542 4579999999999999999999999843
Q ss_pred ---------------------------ccCChhhHHhhcC-CCCCCcEEEcCCCCCcccccC
Q psy151 77 ---------------------------LPVDMECWELHAQ-LPVTPHIMILPSDLRYFVKAL 110 (110)
Q Consensus 77 ---------------------------~~lD~~~~~~~~~-~~~~PDilI~PS~l~~F~K~V 110 (110)
++||++|++..++ ++++|||||+||+|++|+|+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv 399 (460)
T 3flo_A 338 KPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVV 399 (460)
T ss_dssp -----------------------CCEECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEE
T ss_pred cccccccccccccccccccccccccCCcccceeccchhhcccCCCCCEEEcCCCCcCceEEe
Confidence 3589999987666 389999999999999999986
No 2
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=97.01 E-value=0.0013 Score=54.83 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCC-ccC-ChhhHHh
Q psy151 11 DSD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVE-LPV-DMECWEL 86 (110)
Q Consensus 11 ~~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~-~~l-D~~~~~~ 86 (110)
+.+ +++||+.+.|+|+.|=.||-..+.+|.+.- ...++++ +.+.+|+-|+..|.+|-.-. +|. |- .
T Consensus 329 ~~~~~~vtNP~~~~i~G~~~LgtsGqnidDi~ky~-----~~~~~l~-~me~~LkwrHlAPTaPdTl~~yP~~~~----D 398 (476)
T 3e0j_A 329 YSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYS-----SMEDHLE-ILEWTLRVRHISPTAPDTLGCYPFYKT----D 398 (476)
T ss_dssp STTEEECCSSEEEEETTEEEEECSSHHHHHHHHHS-----CCCCHHH-HHHHHHHBTCSCTTSCCC------CCS----C
T ss_pred cCccEEeCCCeEEEECCEEEEEECCCCHHHHHhcC-----CCCCHHH-HHHHHHHHhccCCCCCCceeeccCCCC----C
Confidence 355 899999999999999888887777776542 1246776 88999999999999997421 232 22 2
Q ss_pred hcCCCCCCcEEEcC
Q psy151 87 HAQLPVTPHIMILP 100 (110)
Q Consensus 87 ~~~~~~~PDilI~P 100 (110)
..-++..|||+++.
T Consensus 399 pfVi~~~PhVyf~G 412 (476)
T 3e0j_A 399 PFIFPECPHVYFCG 412 (476)
T ss_dssp TTSCSSCCSEEEEE
T ss_pred ceeecCCCcEEEeC
Confidence 35568899999874
No 3
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=28.06 E-value=25 Score=17.93 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=10.4
Q ss_pred HHHhHhcccccc
Q psy151 57 LASHLLQQQCYY 68 (110)
Q Consensus 57 l~~hll~QrsfY 68 (110)
+++.++.+|||+
T Consensus 12 lvk~Mlr~~sf~ 23 (26)
T 1ckk_B 12 LVKSMLRKRSFG 23 (26)
T ss_dssp HHHHHCSSSCCC
T ss_pred HHHHHhhccccc
Confidence 578899999997
No 4
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=25.74 E-value=27 Score=25.38 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.7
Q ss_pred hHHHHHHHhHhccccccc
Q psy151 52 DRLSRLASHLLQQQCYYP 69 (110)
Q Consensus 52 drl~Rl~~hll~QrsfYP 69 (110)
+-|+-..++||.||.-||
T Consensus 23 efl~~ain~ILY~RgiYP 40 (206)
T 2vfx_A 23 EFFSFGINSILYQRGIYP 40 (206)
T ss_dssp HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 567888999999999887
No 5
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=23.09 E-value=32 Score=25.44 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.6
Q ss_pred hHHHHHHHhHhccccccc
Q psy151 52 DRLSRLASHLLQQQCYYP 69 (110)
Q Consensus 52 drl~Rl~~hll~QrsfYP 69 (110)
+-|+-...+||.||.-||
T Consensus 37 eFlevainsILY~RgVYP 54 (227)
T 3abd_A 37 EFLEVAVHLILYVREVYP 54 (227)
T ss_dssp HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhccccCC
Confidence 557788999999999887
No 6
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=21.49 E-value=1.1e+02 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=18.5
Q ss_pred ccCCCCCCCCCcEEEECCeEEEeech
Q psy151 8 LSEDSDSKPRPWVLDISGVVVGVTSV 33 (110)
Q Consensus 8 ~~~~~n~~~NP~~~~iN~~~igvts~ 33 (110)
++..+|+-.||....+||.++|+.-+
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 31 (330)
T 1ckm_A 6 INTGKNITTERAVLTLNGLQIKLHKV 31 (330)
T ss_dssp -----CCCEEEEEEEETTEEEEEEEE
T ss_pred ccCCccceecccccccCCcccccccC
Confidence 46678899999999999998888653
No 7
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=19.96 E-value=41 Score=24.56 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.9
Q ss_pred hHHHHHHHhHhccccccc
Q psy151 52 DRLSRLASHLLQQQCYYP 69 (110)
Q Consensus 52 drl~Rl~~hll~QrsfYP 69 (110)
+-|+-..++||.||.-||
T Consensus 21 eFl~~aInsILY~RgIYP 38 (203)
T 4aez_B 21 EFFEYAVNSILFQRGIYP 38 (203)
T ss_dssp HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhccccCC
Confidence 567888999999999887
No 8
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=17.67 E-value=29 Score=18.85 Aligned_cols=6 Identities=17% Similarity=0.827 Sum_probs=5.2
Q ss_pred cccccC
Q psy151 65 QCYYPL 70 (110)
Q Consensus 65 rsfYPl 70 (110)
|||||+
T Consensus 20 RSF~pM 25 (35)
T 4dxr_B 20 RSFHPM 25 (35)
T ss_dssp GSSSCE
T ss_pred HHhHHH
Confidence 899986
No 9
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=17.57 E-value=44 Score=17.12 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=9.9
Q ss_pred HHHhHhcccccc
Q psy151 57 LASHLLQQQCYY 68 (110)
Q Consensus 57 l~~hll~QrsfY 68 (110)
+.+.++..|||+
T Consensus 12 lvk~Ml~~~sf~ 23 (27)
T 1iq5_B 12 LVKAMGHRKRFG 23 (27)
T ss_dssp HHHHHHHHTSSS
T ss_pred HHHHHHhccccc
Confidence 577888899987
No 10
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=17.01 E-value=1.8e+02 Score=21.12 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=22.7
Q ss_pred CCCCcEEEECCeEEEeec---hHHHHHHhHHHhh
Q psy151 15 KPRPWVLDISGVVVGVTS---VDVLMHLGREEFA 45 (110)
Q Consensus 15 ~~NP~~~~iN~~~igvts---~Dil~~L~~~ei~ 45 (110)
+--|+++.-++++||||| .=.+-..-++++.
T Consensus 129 f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie 162 (223)
T 3dfz_A 129 IQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLS 162 (223)
T ss_dssp EECCEEEEETTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 556899999999999998 3455555555554
Done!