RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy151
(110 letters)
>3flo_A DNA polymerase alpha subunit B; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 460
Score = 79.4 bits (195), Expect = 6e-19
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 31/124 (25%)
Query: 16 PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
P I+ + G ++VD L RL R++ H+LQQ+ YYP+ P ++
Sbjct: 274 ANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSI 333
Query: 76 -------------ELPVDMECWELHAQLP------------------VTPHIMILPSDLR 104
E E + +P IMI+PS+L+
Sbjct: 334 RTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQ 393
Query: 105 YFVK 108
+F +
Sbjct: 394 HFAR 397
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 29 GVTSVDVLMHLGREEFAAAPEMTDRLSRLASHL 61
G+ + L+H+G E A L L +
Sbjct: 105 GLLAWYSLIHMGPGELPDA------LVALRMAV 131
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 26.1 bits (58), Expect = 2.4
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 19 WVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASH 60
W + + VT L+H EF + + R ++
Sbjct: 178 WTVGLIKNAASVT----LVHR-GHEFQGHGKTAHEVERARAN 214
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 25.6 bits (56), Expect = 3.8
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 20 VLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHL 61
+ + +D +M L R +F+ E+ +R +LA L
Sbjct: 212 KFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQML 253
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 25.2 bits (56), Expect = 4.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 19 WVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLA 58
W L++ +T L+H R +F A L +
Sbjct: 167 WALNLLDTARRIT----LIHR-RPQFRAHEASVKELMKAH 201
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 25.2 bits (54), Expect = 6.6
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 4 LNKLLSEDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEFAA 46
L ++L++ D K + ++ ++V + D LG +EF
Sbjct: 557 LRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYI 599
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae}
PDB: 3r1x_A*
Length = 295
Score = 25.1 bits (54), Expect = 6.7
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 20/96 (20%)
Query: 17 RPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLI----- 71
R W+ + S + L AA L+ + H +
Sbjct: 19 RAWLYQGEECLESRQSEAGVTRLNGRSPAAV------LAEITQHWRDGATPVVMAGMVGS 72
Query: 72 ------PPNVELPVDMECWELHAQLPVTPH-IMILP 100
P + LP ++ QL I I+P
Sbjct: 73 NVGWKIAPYLPLPAAFS--DIGQQLTAVGDNIWIIP 106
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 24.8 bits (54), Expect = 7.4
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 42 EEFAAAPEMTDRLSRLA 58
E + +P ++ L+ L+
Sbjct: 723 IEHSKSPYPSNWLTSLS 739
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 24.5 bits (54), Expect = 8.2
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 19 WVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRL 54
W L + + V+ ++H R++F A + L
Sbjct: 169 WALMLEPIAKEVS----IIHR-RDKFRAHEHSVENL 199
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis,
cofactor-independ epimerization; 1.50A {Brevibacillus
brevis}
Length = 466
Score = 24.6 bits (54), Expect = 9.6
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 9 SEDSDSKPRPWVLDISGVVV-GVTSVDVLMHLGR------EEFAAAPEMTDRLSRLASHL 61
+ S L+I+G++ G + + ++ + + L + +H
Sbjct: 400 NNLSPESEVYTALNITGLIEGGELVLTFSYSSEQYREESIQQLSQS--YQKHLLAIIAHC 457
Query: 62 LQQQ 65
LQ
Sbjct: 458 LQSH 461
>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis,
electron transfer, oxidoreductase, molybdoenzymes,
molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP:
d.176.1.1 PDB: 1xdq_A*
Length = 298
Score = 24.6 bits (53), Expect = 9.7
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 15 KPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRL 57
K PW L ISG V ++D ++ + +R+ R+
Sbjct: 64 KTDPWTLKISGEVAKPLTLDH------DDLTRRFPLEERIYRM 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,711,279
Number of extensions: 91413
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 17
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)