RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy151
         (110 letters)



>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
           {Aeromonas hydrophila [TaxId: 644]}
          Length = 384

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 67  YYPLIPPNVELPVDMECWELHAQLPVTPHIMIL 99
             P +P   ++PV +E ++     P      + 
Sbjct: 197 VRPTVPARSKIPVKIELYKADISYPYEFKADVS 229


>d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia
           coli [TaxId: 562]}
          Length = 101

 Score = 24.1 bits (52), Expect = 3.3
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 13  DSKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIP 72
            ++   +V    G   G   +  L    +E +  A  +   L    ++ L   C  P   
Sbjct: 27  KTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV---LLAWVNNWLAGDCELPQ-M 82

Query: 73  PNVELPVDMECWELHAQLP 91
           P+V   V     EL   LP
Sbjct: 83  PSVAFGVSCALAELTDTLP 101


>d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia
           coli [TaxId: 562]}
          Length = 116

 Score = 23.5 bits (50), Expect = 4.9
 Identities = 9/64 (14%), Positives = 22/64 (34%)

Query: 27  VVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWEL 86
           + G          G  + +   ++   + +L   L +++    L        +D   W+L
Sbjct: 42  IKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTREELQKILPAGAARNALDCALWDL 101

Query: 87  HAQL 90
            A+ 
Sbjct: 102 AARR 105


>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823
          {Porphyromonas gingivalis [TaxId: 837]}
          Length = 102

 Score = 23.0 bits (49), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 49 EMTDRLSRLASHLLQQQCYYPLIPPNVE 76
           + D L  L    L ++  YP +PP VE
Sbjct: 50 MLIDELKFLCGKGLIKKKQYPEVPPRVE 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,306
Number of extensions: 16964
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)