BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1510
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 2/178 (1%)
Query: 21 LTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+GAI G+ IL
Sbjct: 53 LCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILY 112
Query: 79 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 138
+TP G LG+TT++ +LT G+ CD + ALAIG
Sbjct: 113 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIG 172
Query: 139 LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLF 196
+VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++AG LY Y+F
Sbjct: 173 FSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 2/178 (1%)
Query: 21 LTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+GAI G+ IL
Sbjct: 53 LCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILY 112
Query: 79 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 138
+TP G LG+TT++ +LT G+ CD + ALAIG
Sbjct: 113 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIG 172
Query: 139 LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLF 196
+VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++AG LY Y+F
Sbjct: 173 FSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 170 bits (430), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 2/178 (1%)
Query: 21 LTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+GAI G+ IL
Sbjct: 92 LCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILY 151
Query: 79 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 138
+TP G LG+TT++ +LT G+ CD + ALAIG
Sbjct: 152 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIG 211
Query: 139 LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLF 196
+VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++AG LY Y+F
Sbjct: 212 FSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 112/178 (62%), Gaps = 2/178 (1%)
Query: 21 LTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+GAI G+ IL
Sbjct: 44 LCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILY 103
Query: 79 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 138
+TP G LG+T ++ +LT G+ CD + ALAIG
Sbjct: 104 LVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIG 163
Query: 139 LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLF 196
+VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++AG LY Y+F
Sbjct: 164 FSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 143 bits (360), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 2/182 (1%)
Query: 21 LTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GLSI Q++GH+SG H NPAVT+G+L + ++SI RA+ Y++AQC+GAI + IL
Sbjct: 54 LAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILS 113
Query: 79 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 138
+T + +LG L + QG+ D + A LAIG
Sbjct: 114 GITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIG 173
Query: 139 LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVA 198
L+VALGHL A+D+TG +NPAR+FGSAV+ + +++HW++W GP +GG +A L+Y ++
Sbjct: 174 LSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAP 233
Query: 199 PS 200
S
Sbjct: 234 RS 235
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 2/182 (1%)
Query: 21 LTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GLSI Q++GH+SG H NPAVT+G+L + ++S++RA+ Y++AQC+GAI + IL
Sbjct: 56 LAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILS 115
Query: 79 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 138
+T + +LGL L + QG+ D + LAIG
Sbjct: 116 GITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIG 175
Query: 139 LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVA 198
+VALGHL A+D+TG +NPAR+FGS+V+ + + DHW++W GP +G +A L+Y ++
Sbjct: 176 FSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAP 235
Query: 199 PS 200
S
Sbjct: 236 RS 237
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 120/215 (55%), Gaps = 15/215 (6%)
Query: 15 TVLYPYLTRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAIS 72
T+L L GL+I QALG VSGGH NPA+T+ +L ++S++RA FYV AQ +GAI+
Sbjct: 42 TILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIA 101
Query: 73 GSLILKALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAP 132
G+ IL + P + +GNL + LN + T Q M D +
Sbjct: 102 GAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGS 161
Query: 133 AALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWT-DHWVYWAGPSLGGLVAGLL 191
AL+IGL+V LGHL + FTG SMNPAR+FG AVV N ++ HWV+W GP +G ++A +L
Sbjct: 162 PALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAIL 221
Query: 192 YTYLFVAPSI----------GEYSPVLVEDKEEGK 216
Y YL S+ G Y P ED EE +
Sbjct: 222 YFYLLFPNSLSLSERVAIIKGTYEP--DEDWEEQR 254
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 100/171 (58%)
Query: 25 LSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPAD 84
L+ QA+GH+SG H NPAVT L ++S++RA+ YVVAQ +GA++G+ +L ++TP
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA 111
Query: 85 FQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALG 144
+GNL L TL+ ++ Q D + ALA+G ++ LG
Sbjct: 112 VRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLG 171
Query: 145 HLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYL 195
HL + +TGA MNPAR+F A++ +T+HWVYW GP +G + LLY +L
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 100/171 (58%)
Query: 25 LSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPAD 84
L+ QA+GH+SG H NPAVT L ++S++RA+ YVVAQ +GA++G+ +L ++TP
Sbjct: 48 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA 107
Query: 85 FQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALG 144
+GNL L TL+ ++ Q D + ALA+G ++ LG
Sbjct: 108 VRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLG 167
Query: 145 HLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYL 195
HL + +TGA MNPAR+F A++ +T+HWVYW GP +G + LLY +L
Sbjct: 168 HLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 218
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 98/166 (59%)
Query: 30 QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNL 89
QA+GH+SG H NPAVT L ++S++RA+ YVVAQ +GA++G+ +L ++TP +GNL
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNL 110
Query: 90 GLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAV 149
L TL+ ++ Q D + ALA+G ++ LGHL +
Sbjct: 111 ALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGM 170
Query: 150 DFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYL 195
+TGA MNPAR+F A++ +T+HWVYW GP +G + LLY +L
Sbjct: 171 YYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 216
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%)
Query: 25 LSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPAD 84
L+ QA+GH+SG H NPAVT L ++S++RA+ Y+VAQ +GA++G+ +L ++TP
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPA 111
Query: 85 FQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALG 144
+GNL L TL+ ++ Q D + ALA+G ++ LG
Sbjct: 112 VRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLG 171
Query: 145 HLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYL 195
HL + +TGA MNPAR+F A++ +T+HWVYW GP +G + LLY +L
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 11/181 (6%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA---DFQGNLGL 91
+SGGH NPAVT G+ KVS++RA+ Y++AQC+GAI G ++KA F G
Sbjct: 118 ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 177
Query: 92 TTL--NKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAV 149
L NK + H A L IG V + HLA +
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATI 237
Query: 150 DFTGASMNPARTFGSAVVAN---IWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSI---GE 203
TG +NPAR+FG+AV+ N +W D W++W GP +G VA + Y+ A +I GE
Sbjct: 238 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGE 297
Query: 204 Y 204
+
Sbjct: 298 F 298
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA---DFQGNLGL 91
+SGGH NPAVT G+ KVS++RA+ Y++AQC+GAI G ++KA F G
Sbjct: 95 ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 154
Query: 92 TTL--NKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAV 149
L NK + H A L IG V + HLA +
Sbjct: 155 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATI 214
Query: 150 DFTGASMNPARTFGSAVVAN---IWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSI 201
TG +NPAR+FG+AV+ N +W D W++W GP +G VA + Y+ A +I
Sbjct: 215 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAI 269
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA---DFQGNLGL 91
+SGGH NPAVT G+ KVS++RA+ Y++AQC+GAI G ++KA F G
Sbjct: 95 ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 154
Query: 92 TTL--NKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAV 149
L NK + H A L IG V + HLA +
Sbjct: 155 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATI 214
Query: 150 DFTGASMNPARTFGSAVVAN---IWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSI 201
TG +NPAR+FG+AV+ N +W D W++W GP +G VA + Y+ A +I
Sbjct: 215 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAI 269
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 11/182 (6%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA---DFQGNLGL 91
+SGGH NPAVT G+ KV ++RA+ Y++AQC+GAI G ++KA F G
Sbjct: 118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 177
Query: 92 TTL--NKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAV 149
L NK + H A L IG V + HLA +
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATI 237
Query: 150 DFTGASMNPARTFGSAVVAN---IWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSI---GE 203
TG +NPAR+FG+AV+ N +W D W++W GP +G VA + Y+ A +I GE
Sbjct: 238 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGE 297
Query: 204 YS 205
+
Sbjct: 298 FR 299
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA---DFQGNLGL 91
+SGGH NPAVT G+ KV ++RA+ Y++AQC+GAI G ++KA F G
Sbjct: 114 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 173
Query: 92 TTL--NKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAV 149
L NK + H A L IG V + HLA +
Sbjct: 174 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATI 233
Query: 150 DFTGASMNPARTFGSAVVAN---IWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSI 201
TG +NPAR+FG+AV+ N +W D W++W GP +G VA + Y+ A +I
Sbjct: 234 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAI 288
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 26 SIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK--ALTPA 83
SIY ALG++SG H NPAVT+G+ + K V Y++AQ +GA GS I A A
Sbjct: 69 SIY--ALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGA 126
Query: 84 DFQGNLGLTTLNKHLTPVQGMXXXXX-XXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVA 142
G LG T ++ Q M D P K A + IGLTVA
Sbjct: 127 ATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAP--KGFAGIIIGLTVA 184
Query: 143 LGHLAAVDFTGASMNPARTFGSAVVANIW--TDHWVYWA----GPSLGGLVAGLLYTYL 195
+ +G+S+NPARTFG + I+ TD W Y++ GP +G ++A L Y YL
Sbjct: 185 GIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALT--PADFQGN 88
+LG +SG H NPAVT+ + + G+ V Y+VAQ IGA GSL+ A A G
Sbjct: 73 SLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGG 132
Query: 89 LGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAP---AALAIGLTVALGH 145
LG T P G G +AP A L IGLTV G
Sbjct: 133 LGATA----PFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVG-GI 187
Query: 146 LAAV-DFTGASMNPARTFG-----SAVVANIWTDHWVYWAGPSLGGLVAGLLYTYL 195
+ + + TG+S+NPARTFG S + N+W +Y GP +G + A LY YL
Sbjct: 188 ITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYL 243
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 56 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 115
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL +
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAL 173
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L HL ++ T S+NPAR+ A+ W W +W
Sbjct: 174 TLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 56 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 115
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL +
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAL 173
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L HL ++ T S+NPAR+ A+ W W +W
Sbjct: 174 TLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 53 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 112
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL +
Sbjct: 113 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAL 170
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L HL ++ T S+NPAR+ A+ W W +W
Sbjct: 171 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 56 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 115
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL +
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAL 173
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L HL ++ T S+NPAR+ A+ W W +W
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 56 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 115
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAC 173
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L HL ++ T S+NPAR+ A+ W W +W
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 34 HVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPAD--FQGNLGL 91
VSGG+ NPAVT+ ++ + R + Q + ++ + A+TP + F LG
Sbjct: 105 RVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGG 164
Query: 92 TTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVALGHLAAVDF 151
++ K A A IG+ + + HL + +
Sbjct: 165 GASRTRGLFLEAFGTAILCLTVLMLAV------EKHRATWFAPFVIGIALLIAHLICIYY 218
Query: 152 TGASMNPARTFGSAVVANIWTD-HWVYWAGPSLGGLVA 188
TGA +NPAR+FG AV A + + HW+YW GP LG +A
Sbjct: 219 TGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLA 256
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+G +SGGHFNPAV+VG+ G+ V YV+AQ GAI + L + +LG
Sbjct: 81 AVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLG 140
Query: 91 LTTLNKH-------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTVAL 143
N + + V + G P AP +AIGL + L
Sbjct: 141 GFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAP--IAIGLALTL 198
Query: 144 GHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYWAGPSLGG 185
HL ++ T S+NPAR+ G A+ W W++W P +GG
Sbjct: 199 IHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGG 242
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 56 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 115
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL +
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAL 173
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L L ++ T S+NPAR+ A+ W W +W
Sbjct: 174 TLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L + +
Sbjct: 56 AVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAA 115
Query: 91 LTTLNKH---------LTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGLTV 141
+ + + + + D P AP +AIGL +
Sbjct: 116 ASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGLAL 173
Query: 142 ALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYW 178
L L ++ T S+NPAR+ A+ W W +W
Sbjct: 174 TLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 83/227 (36%), Gaps = 48/227 (21%)
Query: 25 LSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGS---------- 74
++IY A VSG H NPAVT+ + + + ++V+Q GA +
Sbjct: 54 MAIYLTA--GVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL 111
Query: 75 ---------LILKALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGN 125
++ ++ D G T N H+ VQ D
Sbjct: 112 FFDFEQTHHIVRGSVESVDLAGTFS-TYPNPHINFVQAFAVEMVITAILMGLILALTDDG 170
Query: 126 KPHAKAP-AALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHW--------- 175
+ P A L IGL +A+ + TG +MNPAR FG V A W W
Sbjct: 171 NGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFA--WLAGWGNVAFTGGR 228
Query: 176 ------VYWAGPSLGGLVAGLLYTYLFVAPSIGEYSP---VLVEDKE 213
V GP +G +V Y L IG + P +VE+KE
Sbjct: 229 DIPYFLVPLFGPIVGAIVGAFAYRKL-----IGRHLPCDICVVEEKE 270
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 82/227 (36%), Gaps = 48/227 (21%)
Query: 25 LSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKAL---- 80
++IY A VSG H NPAVT+ + + + ++V+Q GA + ++ L
Sbjct: 54 MAIYLTA--GVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL 111
Query: 81 ---------------TPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGN 125
D G T N H+ VQ D
Sbjct: 112 FFDFEQTHHIVRGSVESVDLAGTFS-TYPNPHINFVQAFAVEMVITAILMGLILALTDDG 170
Query: 126 KPHAKAP-AALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHW--------- 175
+ P A L IGL +A+ + TG +MNPAR FG V A W W
Sbjct: 171 NGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGR 228
Query: 176 ------VYWAGPSLGGLVAGLLYTYLFVAPSIGEYSP---VLVEDKE 213
V GP +G +V Y L IG + P +VE+KE
Sbjct: 229 DIPYFLVPLFGPIVGAIVGAFAYRKL-----IGRHLPCDICVVEEKE 270
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 24 GLSIYFQAL--GHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGS 74
GL+++F L +SG H N AV++G+ + K + + Y AQ +GA G+
Sbjct: 51 GLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 128 HAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGG 185
H A A+GL VA AVD A +N AR G+ V N W +GG
Sbjct: 180 HVAVQYARAMGLRVA-----AVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGG 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,085,906
Number of Sequences: 62578
Number of extensions: 221761
Number of successful extensions: 562
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 68
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)