RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1510
(216 letters)
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein. MIP (Major Intrinsic
Protein) family proteins exhibit essentially two
distinct types of channel properties: (1) specific water
transport by the aquaporins, and (2) small neutral
solutes transport, such as glycerol by the glycerol
facilitators.
Length = 218
Score = 180 bits (458), Expect = 3e-57
Identities = 71/170 (41%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
Query: 24 GLSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA 83
L GH+SG H NPAVT +L ++S++RA++Y++AQ +GAI G+ +LK +T
Sbjct: 49 ALFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG 108
Query: 84 DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAP-AALAIGLTVA 142
+ +L + Q +E L F LV +F D + + A LAIG V
Sbjct: 109 LQRAGGFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHVAPLAIGFAVF 168
Query: 143 LGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLY 192
L HLA +TGASMNPAR+FG AVV W DHWVYW GP +G +A L+Y
Sbjct: 169 LNHLAGGPYTGASMNPARSFGPAVVLWKWDDHWVYWVGPLIGAALAALVY 218
Score = 30.3 bits (69), Expect = 0.62
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 134 ALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANI-WTDHWVYWAGPSLGGLVAGLLY 192
ALA GL + +GA +NPA TF V I Y LG + L
Sbjct: 43 ALAFGLALFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALL 102
Query: 193 TYLFVAPS 200
+
Sbjct: 103 KGVTNGLQ 110
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules,
and ions out of and between cells. The channel proteins
share a common fold: the N-terminal cytosolic portion
followed by six transmembrane helices, which might have
arisen through gene duplication. On the basis of
sequence similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 167 bits (426), Expect = 3e-52
Identities = 70/179 (39%), Positives = 96/179 (53%), Gaps = 13/179 (7%)
Query: 30 QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNL 89
A+GH+SGGH NPAVT+ + G+ +IR + Y++AQ +GAI G+ +L L + L
Sbjct: 50 YAVGHISGGHINPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFL 109
Query: 90 GL---------TTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCD-GNKPHAKAPAALAIGL 139
G T + ++ +EF F+LVLV+F D N P A LAIGL
Sbjct: 110 GANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGL 169
Query: 140 TVALGHLAAVDFTGASMNPARTFGSAVVANI---WTDHWVYWAGPSLGGLVAGLLYTYL 195
VA LA TGASMNPAR+ G A+ + W WVYW GP +G + L+Y Y+
Sbjct: 170 LVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228
Score = 36.5 bits (85), Expect = 0.006
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 109 FLGFVLVLVIFG---VCDGNKPHAKAPA----ALAIGLTVALGHLAAVDFTGASMNPART 161
FLG +LV FG V + ALA G + + A +G +NPA T
Sbjct: 7 FLG-TFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVT 65
Query: 162 FGSAVVANI-WTDHWVYWAGPSLGGLVAGLL 191
AV Y LG ++ L
Sbjct: 66 LALAVGGRFPLIRVIPYIIAQLLGAILGAAL 96
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins. 1.A.8 The Major
Intrinsic Protein (MIP) FamilyThe MIP family is large
and diverse, possessing over 100 members that all form
transmembrane channels. These channel proteins function
in water, smallcarbohydrate (e.g., glycerol), urea, NH3,
CO2 and possibly ion transport by an energy independent
mechanism. They are found ubiquitously in bacteria,
archaeaand eukaryotes. The MIP family contains two major
groups of channels: aquaporins and glycerol
facilitators.The known aquaporins cluster loosely
together as do the known glycerol facilitators. MIP
family proteins are believed to form aqueous pores that
selectively allow passive transport of their solute(s)
across the membrane with minimal apparent recognition.
Aquaporins selectively transport water (but not
glycerol) while glycerol facilitators selectively
transport glycerol but not water. Some aquaporins can
transport NH3 and CO2. Glycerol facilitators function as
solute nonspecific channels, and may transport glycerol,
dihydroxyacetone, propanediol, urea and other small
neutral molecules in physiologically importantprocesses.
Some members of the family, including the yeast FPS
protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport
both water and small solutes [Transport and binding
proteins, Unknown substrate].
Length = 216
Score = 161 bits (409), Expect = 7e-50
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Query: 30 QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNL 89
+G +SG H NPAVT+ +L + + R Y+VAQ IGAI G+ +L LT F GNL
Sbjct: 50 YCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGNL 109
Query: 90 GLTTLNKH-LTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAP-AALAIGLTVALGHLA 147
+ ++ Q +EF +LVLVIF D + A LAIGL V L HL+
Sbjct: 110 AVNGSASAGVSSGQAFFVEFIGTAILVLVIFATTDDRNRVPRGGFAPLAIGLLVFLIHLS 169
Query: 148 AVDFTGASMNPARTFGSAVVAN--IWTDHWVYWAGPSLGGLVAGLLY 192
+TG MNPAR+ G A+ A W +HWVYW GP +G ++ L+Y
Sbjct: 170 MGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216
Score = 41.5 bits (98), Expect = 1e-04
Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPA---------ALAIGLTVALGHLAAVDFTGASMN 157
EF F+LV G G A ALA GL VA +GA +N
Sbjct: 2 EFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLN 61
Query: 158 PARTFGSAVVANI-WTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEY 204
PA T + VY +G ++ L L G
Sbjct: 62 PAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGNL 109
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional.
Length = 252
Score = 114 bits (288), Expect = 2e-31
Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLGLTTL 94
+SGGH NPAVT G G ++++R + Y +AQ +G++ L+LK T L++
Sbjct: 79 ISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSS- 137
Query: 95 NKHLTPVQGMGIEFFLGFVLVLVIFGVC-DGNKPHAKAPAALAIGLTVALGHLAAVDFTG 153
+ E + F LV ++ D K A +AIG V LA F G
Sbjct: 138 --GVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDG 195
Query: 154 ASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEYSPV 207
ASMNPA +FG AVV+ WT+HWVYWAGP +GG +AGL+Y +F+ + E P
Sbjct: 196 ASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTHEQLPT 249
Score = 29.0 bits (65), Expect = 1.9
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 131 APAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANI-WTDHWVYWAGPSLGGLVAG 189
A A A L VA+ + +G +NPA TFG+ + NI +YW LG +VA
Sbjct: 61 AALAHAFALFVAVS--VGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVAC 118
Query: 190 LL 191
LL
Sbjct: 119 LL 120
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases
(Major Intrinsic Protein Family) [Carbohydrate transport
and metabolism].
Length = 241
Score = 112 bits (283), Expect = 9e-31
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKAL-------TPA 83
A G +SG H NPAVT+ + G+ + + Y+VAQ +GA +G+ +L L T
Sbjct: 58 AFGGISGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEG 117
Query: 84 DFQGNLG-LTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVA 142
D +LG +T + Q IEF FVLVL I + D +A A LAIGL V
Sbjct: 118 DPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNANAGF-APLAIGLLVT 176
Query: 143 LGHLAAVDFTGASMNPARTFGSAVVANIWTD---------HWVYWAGPSLGGLVAGLLYT 193
L+ TG ++NPAR G + ++ W+ GP +G ++ LLY
Sbjct: 177 AIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYK 236
Query: 194 YLF 196
L
Sbjct: 237 LLL 239
Score = 36.8 bits (86), Expect = 0.004
Identities = 29/108 (26%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 107 EFFLGFVLVL-----VIFGVCDGNKPHAKAPAALAI--GLTVALGHLAAVDFTGASMNPA 159
EF F+L+ V G+K +A+ GL V + A +GA +NPA
Sbjct: 11 EFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPA 70
Query: 160 RTFGSAVVANI-WTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEYSP 206
T AV W Y LG L YL I E
Sbjct: 71 VTIALAVRGRFPWRKVLPYIVAQVLGAFAGAAL-LYLLYYGKILETEG 117
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional.
Length = 250
Score = 112 bits (281), Expect = 2e-30
Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query: 34 HVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLGLTT 93
++SGGH NPAVT+G+ G ++II FY +AQC+G+I L+L +T + G+
Sbjct: 76 NISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAA 135
Query: 94 LNKHLTPVQGMGIEFFLGFVLVLVIFGVC-DGNKPHAKAPAALAIGLTVALGHLAAVDFT 152
L ++G+ +E + F LV ++ D K A +AIG V LAA F+
Sbjct: 136 ---GLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 192
Query: 153 GASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEYSPVLVED 211
G SMNPAR+FG AVV+ ++ W+YW GP +GG +AGL+Y +F IG Y+ +
Sbjct: 193 GGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVF----IGSYAAAPTSE 247
Score = 31.8 bits (72), Expect = 0.20
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 127 PHAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWT-DHWVYWAGPSLGG 185
P A+A + +G A + +G +NPA T G A+ NI + YW LG
Sbjct: 53 PAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGS 112
Query: 186 LVAGLLYTYLFVAPSI 201
+VA LL ++ S+
Sbjct: 113 IVACLLLVFVTNGESV 128
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional.
Length = 256
Score = 105 bits (264), Expect = 7e-28
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Query: 26 SIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADF 85
++Y A ++SGGH NPAVT GM G +S+ A+FY ++Q + ++ L LK T
Sbjct: 74 AVYIAA--NISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQ- 130
Query: 86 QGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGH 145
++ + + +T +E L F LV ++ D + A LAIGL
Sbjct: 131 --HVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGLLGAIGPLAIGLVAGANV 188
Query: 146 LAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLY 192
LAA F+G SMNPA FGSAVVA + + VYW GP LGG VAGLLY
Sbjct: 189 LAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLY 235
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional.
Length = 231
Score = 99.3 bits (248), Expect = 1e-25
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
A+GH+SGGHFNPAV+VG+ A G+ V Y++AQ +G I+ + +L + A +
Sbjct: 53 AVGHISGGHFNPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLI--ASGKAGFD 110
Query: 91 LTTLN-----------KHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGL 139
L + + + E L +LVI G D P AP +AIGL
Sbjct: 111 LAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAPAGFAP--IAIGL 168
Query: 140 TVALGHLAAVDFTGASMNPARTFGSAVVANIW--TDHWVYWAGPSLGGLVAGLLYTYLF 196
+ L HL ++ T S+NPAR+ G A+ W W++W P +G ++ GL+Y L
Sbjct: 169 ALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLL 227
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional.
Length = 283
Score = 91.5 bits (227), Expect = 2e-22
Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKAL---TPADFQG 87
+ GH+SG HFNPAVTV + + Y+ AQ G++ SL L+ + TP F G
Sbjct: 92 STGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFG 151
Query: 88 NLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLA 147
+ Q + E + F+L+ VI GV ++ + A +A+G+T+ L
Sbjct: 152 TTPTDS------SGQALVAEIIISFLLMFVISGVATDSRAVGEL-AGIAVGMTIILNVFV 204
Query: 148 AVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYL 195
A +GASMNPAR+ G A+V + WVY GP +G + G +Y +
Sbjct: 205 AGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLI 252
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional.
Length = 296
Score = 90.9 bits (225), Expect = 6e-22
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLG 90
+LGH+SG H NPAVT+ + G+ + + YV++Q IG+ + L+ L D G
Sbjct: 104 SLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSG 163
Query: 91 LTTLNKHLTPV----QGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHL 146
+ +PV Q +EF + F L+ +I GV N+ + A LAIG TV L L
Sbjct: 164 KHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL-AGLAIGSTVLLNVL 222
Query: 147 AAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLY 192
A + ASMNP R+ G A+V + W+Y P+LG + +Y
Sbjct: 223 IAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVY 268
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 84.5 bits (209), Expect = 1e-19
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 33 GHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQGNLGLT 92
GH+SG H NP++T+ A Y+ AQ +I S LK + G + +
Sbjct: 123 GHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMSGGVTVP 182
Query: 93 TLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAAVDFT 152
+++ Q +EF + F L+ V+ V + + A +A+G TV L L A T
Sbjct: 183 SVSTG----QAFALEFIITFNLLFVVTAVATDTRAVGEL-AGIAVGATVMLNILVAGPST 237
Query: 153 GASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYT 193
G SMNP RT G AV A + W+Y P+LG L YT
Sbjct: 238 GGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYT 278
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional.
Length = 274
Score = 76.8 bits (189), Expect = 7e-17
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 13/183 (7%)
Query: 22 TRGLSI--YFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKA 79
T GL++ ++G +SG H NP+VT+ G + Y+ AQ +G++ + + +
Sbjct: 84 TAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVS 143
Query: 80 LTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFV--LVLVIFGVCDGNKPHAKAP-AALA 136
+ G+ P QG F++ F+ +++ ++P + +
Sbjct: 144 V--------YGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSGFV 195
Query: 137 IGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLF 196
IG+ + L L +G SMNPAR+ G A+V+ + D W+Y P++G + L++ L
Sbjct: 196 IGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLR 255
Query: 197 VAP 199
+
Sbjct: 256 LRT 258
Score = 27.1 bits (60), Expect = 7.6
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 10 VDSSTTVLYPYLTRGLSIYFQALGHVSGGHFNPAVTVGMLATGKVS-------------I 56
V+ T + +L L+ Q+LGH+SG A+ + +L TG VS I
Sbjct: 166 VEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAI 225
Query: 57 IRAVF-----YVVAQCIGAISGSLILKAL 80
+ F Y+ A IGA++G+L+ L
Sbjct: 226 VSWDFKDIWIYITAPTIGAVAGALMFHLL 254
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional.
Length = 294
Score = 65.9 bits (161), Expect = 5e-13
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 25/191 (13%)
Query: 35 VSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPADFQ-------- 86
+SGGH NPAVT+G GK + Y VAQ +GA G+ + L F+
Sbjct: 104 ISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELP 163
Query: 87 ------GNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLT 140
G G+ + E L +L+LVI + D N A +A+GL
Sbjct: 164 WETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAITDPNNCPAFNYLPVAVGLL 223
Query: 141 VALGHLAAVDFTGASMNPARTFGSAVVANI------WTDH----WVYWAGPSLGGLVAGL 190
V + ++ TG ++NPAR G + + I +T WV P +G ++
Sbjct: 224 VFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMF 283
Query: 191 LYTYLFVAPSI 201
LY F+ P I
Sbjct: 284 LYDK-FIPPLI 293
Score = 32.8 bits (75), Expect = 0.096
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPAALAI----GLTVALGHLAAVDFTGASMNPARTF 162
EF FVL+ GV LAI GL V G L + +G +NPA T
Sbjct: 56 EFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTL 115
Query: 163 GSAVVANI-WTDHWVYWAGPSLGGLVAG----LLYTYLFVAPSIGE 203
G+AV W Y+ LG V LY F I E
Sbjct: 116 GNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPE 161
>gnl|CDD|220565 pfam10095, DUF2333, Uncharacterized protein conserved in bacteria
(DUF2333). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 337
Score = 33.4 bits (77), Expect = 0.058
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 171 WTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEY 204
W D + V G L YL + +G Y
Sbjct: 1 WADGPRTMGEKGILKTVLGALAVYLLILYLLGIY 34
>gnl|CDD|237701 PRK14398, PRK14398, membrane protein; Provisional.
Length = 191
Score = 28.7 bits (64), Expect = 1.9
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 60 VFYVVAQCIGAISGSLILKALTPADFQ----GNLGLT----TLNKHLTPVQGMGIEFFLG 111
+ +++ +G+I SLI+ + + + GN+G T T NK L + ++ G
Sbjct: 5 IVLILSYILGSIPFSLIITKIKGINLREVGSGNIGATNVARTGNKFLA-ALALFLDSLKG 63
Query: 112 FVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAAV--DFTGASMNPARTFGSAVVAN 169
F+ V + CD N + A LA+ LGH+ + F+G A T G + N
Sbjct: 64 FIAVYIAQQFCDNNDFYIYVSAILAV-----LGHMFPIWLKFSGGK-GVATTLGILIALN 117
Query: 170 I 170
I
Sbjct: 118 I 118
>gnl|CDD|187745 cd09223, Photo_RC, D1, D2 subunits of photosystem II (PSII); M, L
subunits of bacterial photosynthetic reaction center.
This protein superfamily contains the D1, D2 subunits of
the photosystem II (PS II) and the M, L subunits of the
bacterial photosynthetic reaction center (RC). These
four proteins are highly homologous and share a common
fold. PS II is a multi-subunit protein found in the
photosynthetic membranes of plants, algae, and
cyanobacteria. It utilizes light-induced electron
transfer and water-splitting reactions to produce
protons, electrons, and molecular oxygen. The protons
generated are instrumental in ATP formation. Bacterial
photosynthetic reaction center (RC) complex is found in
photosynthetic bacteria, such as purple bacteria and
other proteobacteria species. It couples light-induced
electron transfer to proton pumping across the membrane
by reactions of a quinone molecule (QB) that binds two
electrons and two protons at the active site. Protons
are translocated from the bacterial cytoplasm to the
periplasmic space, generating an electrochemical
gradient of protons (the protonmotive force) that can be
used to power reactions such as the synthesis of ATP.
Length = 199
Score = 27.0 bits (60), Expect = 5.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 84 DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFG 120
D+ N N H P +G+ F G L+ + G
Sbjct: 96 DWVNNFQYEHNNWHYNPFHMLGVAFVFGGALLCAMHG 132
>gnl|CDD|236481 PRK09360, lamB, maltoporin; Provisional.
Length = 415
Score = 27.6 bits (62), Expect = 5.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 130 KAPAALAIGLTVALGHLAAVDFTG 153
K P A+A+ + AVDF G
Sbjct: 7 KLPLAVAVAAGLLSTQAMAVDFHG 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,278,142
Number of extensions: 1100198
Number of successful extensions: 1248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 92
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)