RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1510
(216 letters)
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 241 bits (616), Expect = 9e-80
Identities = 91/189 (48%), Positives = 123/189 (65%), Gaps = 2/189 (1%)
Query: 11 DSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCI 68
++ L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+
Sbjct: 82 PLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCL 141
Query: 69 GAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH 128
GAI G+ IL +TP G LG+TT++ +LT G+ +E + F LV IF CD +
Sbjct: 142 GAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD 201
Query: 129 AKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVA 188
ALAIG +VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++A
Sbjct: 202 VTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLA 261
Query: 189 GLLYTYLFV 197
G LY Y+F
Sbjct: 262 GALYEYVFC 270
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 238 bits (608), Expect = 4e-79
Identities = 91/189 (48%), Positives = 123/189 (65%), Gaps = 2/189 (1%)
Query: 11 DSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCI 68
++ L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+
Sbjct: 43 PLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCL 102
Query: 69 GAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH 128
GAI G+ IL +TP G LG+TT++ +LT G+ +E + F LV IF CD +
Sbjct: 103 GAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD 162
Query: 129 AKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVA 188
ALAIG +VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++A
Sbjct: 163 VTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLA 222
Query: 189 GLLYTYLFV 197
G LY Y+F
Sbjct: 223 GALYEYVFC 231
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 233 bits (596), Expect = 1e-77
Identities = 79/215 (36%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 4 PLGPSCVDSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVF 61
+ + L GLSI Q++GH+SG H NPAVT+G+L + ++S++RA+
Sbjct: 39 IKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIM 98
Query: 62 YVVAQCIGAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGV 121
Y++AQC+GAI + IL +T + +LGL L + QG+GIE LVL +
Sbjct: 99 YIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT 158
Query: 122 CDGNKPHAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGP 181
D + LAIG +VALGHL A+D+TG +NPAR+FGS+V+ + + DHW++W GP
Sbjct: 159 TDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGP 218
Query: 182 SLGGLVAGLLYTYLFVAPSIGEYSPVLVEDKEEGK 216
+G +A L+Y ++ S V V + +
Sbjct: 219 FIGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVE 253
Score = 36.6 bits (85), Expect = 0.004
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPA-----------ALAIGLTVALGHLAAVDFTGAS 155
EF + + + G G K+ +LA GL++A + +GA
Sbjct: 17 EFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAH 76
Query: 156 MNPARTFGSAVVANI-WTDHWVYWAGPSLGGLVA-GLLY 192
+NPA T G + I +Y +G +VA +L
Sbjct: 77 LNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILS 115
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 231 bits (592), Expect = 4e-77
Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 2/192 (1%)
Query: 11 DSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCI 68
VL L GL++ QA+GH+SG H NPAVT L ++S++RA+ YVVAQ +
Sbjct: 36 PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLL 95
Query: 69 GAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH 128
GA++G+ +L ++TP +GNL L TL+ ++ Q +E FL VL IF D +
Sbjct: 96 GAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155
Query: 129 AKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVA 188
ALA+G ++ LGHL + +TGA MNPAR+F A++ +T+HWVYW GP +G +
Sbjct: 156 RLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLG 215
Query: 189 GLLYTYLFVAPS 200
LLY +L
Sbjct: 216 SLLYDFLLFPRL 227
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 228 bits (584), Expect = 2e-76
Identities = 90/188 (47%), Positives = 122/188 (64%), Gaps = 2/188 (1%)
Query: 11 DSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCI 68
++ L GLSI Q GH+SGGH NPAVTV M+ T K+SI ++VFY+ AQC+
Sbjct: 34 PLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCL 93
Query: 69 GAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH 128
GAI G+ IL +TP G LG+T ++ +LT G+ +E + F LV IF CD +
Sbjct: 94 GAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTD 153
Query: 129 AKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVA 188
ALAIG +VA+GHL A+++TGASMNPAR+FG AV+ W +HW+YW GP +G ++A
Sbjct: 154 VTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLA 213
Query: 189 GLLYTYLF 196
G LY Y+F
Sbjct: 214 GGLYEYVF 221
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 229 bits (587), Expect = 2e-76
Identities = 90/206 (43%), Positives = 123/206 (59%), Gaps = 3/206 (1%)
Query: 11 DSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCI 68
+ T+L L GL+I QALG VSGGH NPA+T+ +L ++S++RA FYV AQ +
Sbjct: 38 SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLV 97
Query: 69 GAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH 128
GAI+G+ IL + P + +GNL + LN + T Q M +E L F L L IF D +
Sbjct: 98 GAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157
Query: 129 AKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTD-HWVYWAGPSLGGLV 187
AL+IGL+V LGHL + FTG SMNPAR+FG AVV N ++ HWV+W GP +G ++
Sbjct: 158 PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVL 217
Query: 188 AGLLYTYLFVAPSIGEYSPVLVEDKE 213
A +LY YL S+ V +
Sbjct: 218 AAILYFYLLFPNSLSLSERVAIIKGT 243
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 222 bits (567), Expect = 8e-73
Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 10/210 (4%)
Query: 6 GPSCVDSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYV 63
+ V S +L G I+ +SGGH NPAVT G+ KV ++RA+ Y+
Sbjct: 87 KETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYM 146
Query: 64 VAQCIGAISGSLILKALTPADFQGN-LGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVC 122
+AQC+GAI G ++KA + G ++ +G E FVLV +F
Sbjct: 147 IAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSAT 206
Query: 123 DGNKP----HAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVAN---IWTDHW 175
D + H A L IG V + HLA + TG +NPAR+FG+AV+ N +W D W
Sbjct: 207 DPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQW 266
Query: 176 VYWAGPSLGGLVAGLLYTYLFVAPSIGEYS 205
++W GP +G VA + Y+ A +I
Sbjct: 267 IFWVGPFIGAAVAAAYHQYVLRAAAIKALG 296
Score = 40.1 bits (94), Expect = 2e-04
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPA-------ALAIGLTVALGHLAAVDFTGASMNPA 159
EF + + + G+ A A G + + +G +NPA
Sbjct: 67 EFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPA 126
Query: 160 RTFGSAVVANI-WTDHWVYWAGPSLGGLVAGLL 191
TFG + + VY LG + L
Sbjct: 127 VTFGLFLARKVELLRALVYMIAQCLGAICGVGL 159
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 207 bits (528), Expect = 2e-67
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 7/197 (3%)
Query: 4 PLGPSCVDSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVF 61
P P + ++ G + VSGG+ NPAVT+ ++ + R +
Sbjct: 73 PETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGIL 132
Query: 62 YVVAQCIGAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGV 121
Q + ++ + A+TP + L + +G+ +E F +L L + +
Sbjct: 133 MAFTQIVAGMAAAGAASAMTPGEIAFA---NALGGGASRTRGLFLEAFGTAILCLTVLML 189
Query: 122 CDGNKPHAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTD-HWVYWAG 180
K A A IG+ + + HL + +TGA +NPAR+FG AV A + + HW+YW G
Sbjct: 190 AV-EKHRATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLG 248
Query: 181 PSLGGLVAGLLYTYLFV 197
P LG +A ++
Sbjct: 249 PILGAFLAYSIWQMWKW 265
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 205 bits (523), Expect = 4e-67
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 21 LTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GL++ A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L
Sbjct: 44 LAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY 103
Query: 79 ALTPADFQGNLGLT---------TLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHA 129
+ + + + + + +E L +LVI G D P
Sbjct: 104 LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG 163
Query: 130 KAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYWAGPSLGGLV 187
AP +AIGL L HL ++ T S+NPAR+ A+ W W +W P +GG++
Sbjct: 164 FAP--IAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII 221
Query: 188 AGLLYTYLFVA 198
GL+Y L
Sbjct: 222 GGLIYRTLLEK 232
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 200 bits (512), Expect = 3e-65
Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 21 LTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILK 78
L GL++ A+G +SGGHFNPAV+VG+ G+ V YV+AQ GAI + L
Sbjct: 69 LAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALY 128
Query: 79 ALTPADFQGNLGL-------TTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKA 131
+ +LG + V + IE L ++VI G G P A
Sbjct: 129 VIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFA 188
Query: 132 PAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYWAGPSLGGLVAG 189
P +AIGL + L HL ++ T S+NPAR+ G A+ W W++W P +GG
Sbjct: 189 P--IAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGA 246
Query: 190 LLYTYLF 196
+++
Sbjct: 247 VIWKLFG 253
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel,
structural GENO PSI-2, protein structure initiative;
1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A
3ne2_A*
Length = 246
Score = 169 bits (429), Expect = 9e-53
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALT--PADFQGN 88
ALG++SG H NPAVT+G+ + K V Y++AQ +GA GS I A G
Sbjct: 72 ALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGG 131
Query: 89 LGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 148
LG T ++ Q M E F+L++ I G+ + K A + IGLTVA
Sbjct: 132 LGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERA-PKGFAGIIIGLTVAGIITTL 190
Query: 149 VDFTGASMNPARTFGSAVVANI------WTDHWVYWAGPSLGGLVAGLLYTYLF 196
+ +G+S+NPARTFG + I W + +Y GP +G ++A L Y YL
Sbjct: 191 GNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLT 244
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 134 ALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANI-WTDHWVYWAGPSLGGLVAGLLY 192
LA G +A A + +G +NPA T G V + Y LG ++
Sbjct: 59 GLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIF 118
Query: 193 TYLFVAPS 200
+
Sbjct: 119 LQCAGIGA 126
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 132 bits (334), Expect = 2e-38
Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 22/201 (10%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLIL-----KALTPADF 85
+SG H N AV++G+ + K + + Y AQ +GA G+ + ++ +
Sbjct: 60 VSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKI 119
Query: 86 QGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGN--KPHAKAPAALAIGLTVAL 143
T+ N ++ E L +L+LVI V D N + +GL +
Sbjct: 120 PQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSVVGLIILC 179
Query: 144 GHLAAVDFTGASMNPARTFGSAVVANI----------WTDHWVYWAGPSLGGLVAGLLYT 193
+ TG ++NP+R GS ++ I WV P +G +V Y
Sbjct: 180 IGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYD 239
Query: 194 YLFVAPSIGEYSPVLVEDKEE 214
+ I + +K+
Sbjct: 240 KV-----ICPLVDLANNEKDG 255
Score = 40.7 bits (96), Expect = 2e-04
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPAALAI----GLTVALGHLAAVDFTGASMNPARTF 162
EF FVL+ + G + + GL V G L + +GA +N A +
Sbjct: 16 EFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSI 75
Query: 163 GSAVVANI-WTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEY 204
G + + VY+ LG V Y I
Sbjct: 76 GLSSINKFDLKKIPVYFFAQLLGAFVGTST-VYGLYHGFISNS 117
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 124 bits (313), Expect = 6e-35
Identities = 53/218 (24%), Positives = 81/218 (37%), Gaps = 37/218 (16%)
Query: 31 ALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLIL------------- 77
VSG H NPAVT+ + + + ++V+Q GA + ++
Sbjct: 58 LTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ 117
Query: 78 -----KALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCD-GNKPHAKA 131
+ + T N H+ VQ +E + +L+ +I + D GN
Sbjct: 118 THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP 177
Query: 132 PAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVA-------------NIWTDHWVYW 178
A L IGL +A+ + TG +MNPAR FG V A V
Sbjct: 178 LAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPL 237
Query: 179 AGPSLGGLVAGLLYTYLFVAPSIGEYSPVLVEDKEEGK 216
GP +G +V Y L IG + P + EE +
Sbjct: 238 FGPIVGAIVGAFAYRKL-----IGRHLPCDICVVEEKE 270
Score = 41.1 bits (97), Expect = 1e-04
Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 109 FLG-FVLVLVIFGVCDGNKPHAKAPAALAI----GLTVALGHLAAVDFTGASMNPARTFG 163
FLG +L+ G K + I GL VA+ +GA +NPA T
Sbjct: 15 FLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIA 74
Query: 164 SAVVANI-WTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEYSP 206
+ A + G A L Y ++
Sbjct: 75 LWLFACFDKRKVIPFIVSQVAGAFCAAAL-VYGLYYNLFFDFEQ 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.020
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 126 KPHA--KAPAALAIGLTV 141
K +A APA LAI T+
Sbjct: 30 KLYADDSAPA-LAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.14
Identities = 26/158 (16%), Positives = 41/158 (25%), Gaps = 72/158 (45%)
Query: 102 QGMGIEFF--------------------LGFVLVLVI----------FG----------- 120
QGMG++ + GF ++ ++ FG
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 121 -------VCDGNKPHAKAPAALAIGLTVAL-----GHLAAVDFTGASMNPA-RTFGSAVV 167
+ DG K + T G L+A FT PA A
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT----QPALTLMEKAAF 1744
Query: 168 ANIWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEYS 205
++ + AG S+GEY+
Sbjct: 1745 EDLKS-----KGLIPADATFAGH---------SLGEYA 1768
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.35
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
Query: 41 NPAVTV-GMLATGK----VSIIRA----------VFYV-VAQCIGAISGSLILKALTPAD 84
V + G+L +GK + + + +F++ + C S +L+ L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEMLQKLL 206
Query: 85 FQGNLGLTTLNKHLTPV 101
+Q + T+ + H + +
Sbjct: 207 YQIDPNWTSRSDHSSNI 223
Score = 28.7 bits (63), Expect = 1.9
Identities = 12/113 (10%), Positives = 22/113 (19%), Gaps = 33/113 (29%)
Query: 76 ILKALTPADFQGNLGLTTLNKHLTPVQGMG-------IEFFLGFVL--VLVIFGVCDGNK 126
A + + LTT K +T + V + +
Sbjct: 258 AWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 127 PHAKAPAALAIG-LTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYW 178
P L +++ S+ W W
Sbjct: 315 PQDLPREVLTTNPRRLSI--------IAESIRD------------GLATWDNW 347
Score = 28.3 bits (62), Expect = 2.1
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 18/74 (24%)
Query: 10 VDSSTTVLYPYLTRGLSIYFQALGHVSGGHFN-----PAVTVGMLATGKVSIIRAVFYVV 64
++SS VL P R F L V F P + + ++ + V VV
Sbjct: 359 IESSLNVLEPAEYRK---MFDRLS-V----FPPSAHIPTILLSLIWFDVIK--SDVMVVV 408
Query: 65 AQCIGAISGSLILK 78
+ SL+ K
Sbjct: 409 NKL---HKYSLVEK 419
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 3.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 199 PSIGEYSPVLVEDKEEG 215
P Y P +VE EG
Sbjct: 25 PECKVYPPKIVERFSEG 41
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 26.0 bits (57), Expect = 6.8
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 96 KHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 148
+ L G + GFV+ +IF + + L L +A L +
Sbjct: 54 QALILQLLPGTQGLYGFVIAFLIFINLGSDMSVVQGLNFLGASLPIAFTGLFS 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,398,824
Number of extensions: 207102
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 37
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)