RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1510
(216 letters)
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 130 bits (328), Expect = 3e-38
Identities = 72/177 (40%), Positives = 112/177 (63%)
Query: 24 GLSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA 83
++ Q++GH+SG H NPAVT+G+L + ++S++RA+ Y++AQC+GAI + IL +T +
Sbjct: 61 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS 120
Query: 84 DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVAL 143
+LGL L + QG+GIE LVL + D + LAIG +VAL
Sbjct: 121 LPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVAL 180
Query: 144 GHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVAPS 200
GHL A+D+TG +NPAR+FGS+V+ + + DHW++W GP +G +A L+Y ++ S
Sbjct: 181 GHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237
Score = 34.0 bits (77), Expect = 0.010
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPA-----------ALAIGLTVALGHLAAVDFTGAS 155
EF + + + G G K+ +LA GL++A + +GA
Sbjct: 17 EFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAH 76
Query: 156 MNPARTFGSAVVANIWTDHWV-YWAGPSLGGLVAGLLYTYLF 196
+NPA T G + I + Y +G +VA + + +
Sbjct: 77 LNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 126 bits (318), Expect = 8e-37
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 2/189 (1%)
Query: 10 VDSSTTVLYPYLTRGLSIYF--QALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQC 67
VL L GL++ QA+GH+SG H NPAVT L ++S++RA+ Y+VAQ
Sbjct: 30 APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQL 89
Query: 68 IGAISGSLILKALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKP 127
+GA++G+ +L ++TP +GNL L TL+ ++ Q +E FL VL IF D +
Sbjct: 90 LGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRN 149
Query: 128 HAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWTDHWVYWAGPSLGGLV 187
ALA+G ++ LGHL + +TGA MNPAR+F A++ +T+HWVYW GP +G +
Sbjct: 150 GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGL 209
Query: 188 AGLLYTYLF 196
LLY +L
Sbjct: 210 GSLLYDFLL 218
Score = 36.2 bits (83), Expect = 0.001
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAP--AALAIGLTVALGHLAAVDFTGASMNPARTFGS 164
EFF V G P ALA GL +A A +GA +NPA TF
Sbjct: 11 EFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAF 70
Query: 165 AVVANI-WTDHWVYWAGPSLGGLVAGLLYTYLF 196
V + + Y LG + + +
Sbjct: 71 LVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVT 103
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Length = 231
Score = 104 bits (260), Expect = 3e-28
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Query: 24 GLSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA 83
+ A+GH+SGGHFNPAVT+G+ A G+ V YV+AQ +G I + +L +
Sbjct: 46 TVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG 105
Query: 84 DFQGNLGL---------TTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAA 134
+ + + + +E L +LVI G D P AP
Sbjct: 106 KTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP-- 163
Query: 135 LAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANIWT--DHWVYWAGPSLGGLVAGLLY 192
+AIGL + L HL ++ T S+NPAR+ A+ W W +W P +GG++ GL+Y
Sbjct: 164 IAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIY 223
Query: 193 TYLF 196
L
Sbjct: 224 RTLL 227
Score = 32.8 bits (74), Expect = 0.020
Identities = 26/101 (25%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 107 EFFLGFVLVLVIFGVC-----DGNKPHAKAPAALAIGLTVALGHLAAVDFTGASMNPART 161
E F F LV G A ALA GLTV A +G NPA T
Sbjct: 8 ECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVT 67
Query: 162 FGSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIG 202
G V + + G + YL + G
Sbjct: 68 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTG 108
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 100 bits (249), Expect = 2e-26
Identities = 51/205 (24%), Positives = 78/205 (38%), Gaps = 32/205 (15%)
Query: 24 GLSIYFQALGHVSGGHFNPAVTVGMLATGKVSIIRAVFYVVAQCIGAISGSLILKALTPA 83
G+++ VSG H NPAVT+ + + + ++V+Q GA + ++ L
Sbjct: 46 GVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYN 105
Query: 84 DFQ------------------GNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCD-G 124
F T N H+ VQ +E + +L+ +I + D G
Sbjct: 106 LFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDG 165
Query: 125 NKPHAKAPAALAIGLTVALGHLAAVDFTGASMNPARTFGSAVVANI-------------W 171
N A L IGL +A+ + TG +MNPAR FG V A +
Sbjct: 166 NGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDI 225
Query: 172 TDHWVYWAGPSLGGLVAGLLYTYLF 196
V GP +G +V Y L
Sbjct: 226 PYFLVPLFGPIVGAIVGAFAYRKLI 250
Score = 34.7 bits (79), Expect = 0.004
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 107 EFFLGFVLVLVIFGVCDGNKPHAKAPA----ALAIGLTVALGHLAAVDFTGASMNPARTF 162
EF +L+ G K + ++ GL VA+ +GA +NPA T
Sbjct: 9 EFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTI 68
Query: 163 GSAVVANIWTDHWVYWAGPSLGGLVAGLLYTYLFVAPSIGEYSP 206
+ A + + + G Y ++
Sbjct: 69 ALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ 112
>d1szna1 b.71.1.1 (A:315-417) Melibiase {Trichoderma reesei [TaxId:
51453]}
Length = 103
Score = 25.5 bits (56), Expect = 2.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 157 NPARTFGSAVVANIWTDHWVYWAGPSLGGLVAGLL 191
NP TF A +WAGPS G + ++
Sbjct: 14 NPDWTFNVTYPAE-------FWAGPSSKGHLVLMV 41
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 24.8 bits (54), Expect = 5.7
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 18/97 (18%)
Query: 22 TRGLSIYFQALGHVS-----------GGHFNPAVTVGMLATGKV-------SIIRAVFYV 63
LSI+ + LG + ML + + V ++
Sbjct: 25 GNDLSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIELFWRVHFM 84
Query: 64 VAQCIGAISGSLILKALTPADFQGNLGLTTLNKHLTP 100
+ ++SG L+A+ DF N + + P
Sbjct: 85 LGAAAFSMSGIKALRAMAETDFGVNTSTEQVMHLMVP 121
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 281
Score = 25.4 bits (56), Expect = 6.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 84 DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFG 120
D+ N G T N H P + I FF L L + G
Sbjct: 155 DWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHG 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,627
Number of extensions: 35071
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 17
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)