Query psy15100
Match_columns 165
No_of_seqs 213 out of 1290
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:39:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.9 3E-22 1E-26 135.2 9.6 68 33-100 16-83 (84)
2 2dms_A Homeobox protein OTX2; 99.9 5.2E-22 1.8E-26 133.0 9.8 68 36-103 4-71 (80)
3 2dmt_A Homeobox protein BARH-l 99.9 6.5E-22 2.2E-26 132.5 8.7 65 35-99 13-77 (80)
4 2cra_A Homeobox protein HOX-B1 99.9 8.3E-22 2.8E-26 128.8 7.6 64 36-99 4-67 (70)
5 2da3_A Alpha-fetoprotein enhan 99.9 7.4E-22 2.5E-26 132.0 7.3 67 33-99 11-77 (80)
6 2dmq_A LIM/homeobox protein LH 99.9 1.2E-21 4.2E-26 131.0 8.0 65 36-100 4-68 (80)
7 2da2_A Alpha-fetoprotein enhan 99.9 1.2E-21 4.1E-26 127.9 7.6 66 35-100 3-68 (70)
8 1nk2_P Homeobox protein VND; h 99.9 7.7E-22 2.6E-26 131.2 6.7 67 34-100 4-70 (77)
9 2dmu_A Homeobox protein goosec 99.9 1.7E-21 5.9E-26 127.2 8.1 64 36-99 4-67 (70)
10 2da1_A Alpha-fetoprotein enhan 99.9 1E-21 3.6E-26 128.2 6.9 66 35-100 3-68 (70)
11 2vi6_A Homeobox protein nanog; 99.8 9.5E-22 3.3E-26 125.5 6.0 61 38-98 2-62 (62)
12 2l7z_A Homeobox protein HOX-A1 99.8 3E-21 1E-25 127.1 8.2 66 36-101 4-69 (73)
13 3a01_A Homeodomain-containing 99.8 3.1E-21 1.1E-25 132.8 8.3 71 30-100 8-78 (93)
14 2djn_A Homeobox protein DLX-5; 99.8 1.6E-21 5.4E-26 127.5 6.5 64 36-99 4-67 (70)
15 2e1o_A Homeobox protein PRH; D 99.8 3.2E-21 1.1E-25 126.0 7.8 63 37-99 5-67 (70)
16 2da4_A Hypothetical protein DK 99.8 1.5E-21 5.3E-26 130.6 6.4 66 35-100 4-73 (80)
17 2h1k_A IPF-1, pancreatic and d 99.8 1.9E-21 6.3E-26 124.6 6.5 61 38-98 2-62 (63)
18 2ecb_A Zinc fingers and homeob 99.8 1.4E-20 4.6E-25 128.5 10.8 61 45-105 17-77 (89)
19 2m0c_A Homeobox protein arista 99.8 5.1E-21 1.7E-25 126.3 8.3 68 35-102 5-72 (75)
20 1wh5_A ZF-HD homeobox family p 99.8 3.9E-21 1.3E-25 128.9 7.7 61 36-96 14-78 (80)
21 2hdd_A Protein (engrailed home 99.8 2.3E-21 7.7E-26 123.4 6.0 58 39-96 3-60 (61)
22 1ahd_P Antennapedia protein mu 99.8 3.1E-21 1.1E-25 125.4 6.6 63 39-101 2-64 (68)
23 2cue_A Paired box protein PAX6 99.8 3.8E-21 1.3E-25 128.8 7.0 63 37-99 5-67 (80)
24 1ig7_A Homeotic protein MSX-1; 99.8 3.8E-21 1.3E-25 121.1 6.5 58 40-97 1-58 (58)
25 1ftt_A TTF-1 HD, thyroid trans 99.8 5.6E-21 1.9E-25 124.2 7.5 63 39-101 2-64 (68)
26 1b8i_A Ultrabithorax, protein 99.8 4.2E-21 1.5E-25 128.9 7.0 64 36-99 17-80 (81)
27 1bw5_A ISL-1HD, insulin gene e 99.8 3.9E-21 1.3E-25 124.1 6.6 62 38-99 2-63 (66)
28 2r5y_A Homeotic protein sex co 99.8 5.3E-21 1.8E-25 130.2 7.3 66 34-99 23-88 (88)
29 2da5_A Zinc fingers and homeob 99.8 1.4E-20 4.8E-25 124.6 8.7 61 41-101 9-69 (75)
30 1yz8_P Pituitary homeobox 2; D 99.8 2.1E-21 7.1E-26 126.2 4.6 64 38-101 2-65 (68)
31 1wh7_A ZF-HD homeobox family p 99.8 7.1E-21 2.4E-25 127.6 7.4 61 35-96 13-78 (80)
32 1puf_A HOX-1.7, homeobox prote 99.8 9E-21 3.1E-25 126.1 7.6 65 35-99 9-73 (77)
33 1zq3_P PRD-4, homeotic bicoid 99.8 4.5E-21 1.5E-25 124.6 6.0 62 39-100 2-63 (68)
34 2dn0_A Zinc fingers and homeob 99.8 8.8E-21 3E-25 125.8 7.5 65 40-104 9-73 (76)
35 1jgg_A Segmentation protein EV 99.8 6.2E-21 2.1E-25 121.0 6.3 58 40-97 2-59 (60)
36 2k40_A Homeobox expressed in E 99.8 1.1E-20 3.8E-25 122.3 7.3 63 40-102 2-64 (67)
37 1fjl_A Paired protein; DNA-bin 99.8 9.5E-21 3.2E-25 127.1 6.7 63 36-98 15-77 (81)
38 2cuf_A FLJ21616 protein; homeo 99.8 1.6E-20 5.4E-25 129.6 7.3 65 36-100 4-83 (95)
39 3a02_A Homeobox protein arista 99.8 9.2E-21 3.1E-25 120.2 5.4 58 42-99 2-59 (60)
40 2ecc_A Homeobox and leucine zi 99.8 1.4E-20 4.9E-25 124.5 6.6 58 42-99 6-63 (76)
41 1uhs_A HOP, homeodomain only p 99.8 2.2E-20 7.5E-25 122.6 7.4 61 40-100 2-63 (72)
42 2hi3_A Homeodomain-only protei 99.8 2.7E-20 9.4E-25 122.5 7.6 61 40-100 3-64 (73)
43 3rkq_A Homeobox protein NKX-2. 99.8 1.6E-20 5.4E-25 118.0 6.0 57 39-95 2-58 (58)
44 1akh_A Protein (mating-type pr 99.8 1.1E-20 3.9E-25 120.0 5.2 59 37-95 3-61 (61)
45 3a03_A T-cell leukemia homeobo 99.8 1.8E-20 6.2E-25 117.3 5.8 54 44-97 2-55 (56)
46 1b72_A Protein (homeobox prote 99.8 1.3E-20 4.4E-25 130.5 5.5 66 35-100 30-95 (97)
47 2ly9_A Zinc fingers and homeob 99.8 6.4E-20 2.2E-24 120.9 8.6 64 38-101 5-68 (74)
48 2dmn_A Homeobox protein TGIF2L 99.8 8.8E-20 3E-24 123.0 9.0 70 36-105 4-76 (83)
49 1x2n_A Homeobox protein pknox1 99.8 6.9E-20 2.4E-24 120.5 8.2 65 35-99 3-70 (73)
50 2dmp_A Zinc fingers and homeob 99.8 2.4E-19 8.2E-24 122.4 10.5 58 45-102 19-76 (89)
51 1du6_A PBX1, homeobox protein 99.8 4.9E-20 1.7E-24 118.2 4.9 59 39-97 3-64 (64)
52 1puf_B PRE-B-cell leukemia tra 99.8 1.3E-19 4.4E-24 119.2 6.9 62 40-101 2-66 (73)
53 3nar_A ZHX1, zinc fingers and 99.8 1E-19 3.4E-24 125.9 6.5 62 37-98 23-84 (96)
54 1k61_A Mating-type protein alp 99.8 1.4E-19 4.7E-24 114.6 6.3 56 42-97 1-59 (60)
55 2l9r_A Homeobox protein NKX-3. 99.8 2.6E-19 8.8E-24 116.7 6.1 59 44-102 9-67 (69)
56 1b72_B Protein (PBX1); homeodo 99.8 2.2E-19 7.6E-24 121.8 6.0 60 40-99 2-64 (87)
57 2da6_A Hepatocyte nuclear fact 99.8 4.4E-19 1.5E-23 123.4 6.9 64 36-99 3-87 (102)
58 2cqx_A LAG1 longevity assuranc 99.8 1.1E-19 3.7E-24 119.5 3.6 59 40-98 9-68 (72)
59 1wi3_A DNA-binding protein SAT 99.8 5.2E-19 1.8E-23 113.6 6.4 60 36-95 4-64 (71)
60 2xsd_C POU domain, class 3, tr 99.8 2.6E-19 8.9E-24 135.0 5.8 66 35-100 95-160 (164)
61 1au7_A Protein PIT-1, GHF-1; c 99.8 3.2E-19 1.1E-23 132.1 6.1 64 35-98 83-146 (146)
62 1le8_B Mating-type protein alp 99.8 4.8E-19 1.6E-23 119.3 6.3 60 40-99 3-65 (83)
63 1mnm_C Protein (MAT alpha-2 tr 99.8 5.2E-19 1.8E-23 120.1 6.6 60 37-96 25-87 (87)
64 1e3o_C Octamer-binding transcr 99.8 3.6E-19 1.2E-23 133.7 6.1 63 36-98 98-160 (160)
65 1lfb_A Liver transcription fac 99.8 2.9E-19 1E-23 124.2 5.0 66 35-100 5-91 (99)
66 3nau_A Zinc fingers and homeob 99.8 4.2E-19 1.4E-23 114.0 5.3 52 46-97 11-62 (66)
67 3d1n_I POU domain, class 6, tr 99.8 7.3E-19 2.5E-23 130.8 7.1 62 35-96 89-150 (151)
68 2e19_A Transcription factor 8; 99.8 7.5E-19 2.6E-23 112.9 5.2 55 44-98 8-62 (64)
69 1x2m_A LAG1 longevity assuranc 99.7 8.9E-19 3E-23 112.3 4.1 51 48-98 9-60 (64)
70 2d5v_A Hepatocyte nuclear fact 99.7 3.8E-18 1.3E-22 128.4 5.5 66 35-100 93-158 (164)
71 3l1p_A POU domain, class 5, tr 99.7 3.3E-18 1.1E-22 127.8 4.8 61 37-97 94-154 (155)
72 3k2a_A Homeobox protein MEIS2; 99.7 2.9E-17 9.8E-22 106.4 5.6 57 44-100 3-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 2.1E-16 7.3E-21 121.8 2.7 61 36-96 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.6 2.3E-15 7.8E-20 97.2 4.6 47 48-94 14-60 (71)
75 2lk2_A Homeobox protein TGIF1; 99.5 4.1E-15 1.4E-19 100.9 5.2 55 44-98 10-67 (89)
76 2h8r_A Hepatocyte nuclear fact 99.5 4.5E-15 1.5E-19 115.9 5.4 60 35-94 138-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 6.2E-14 2.1E-18 117.1 4.5 55 41-95 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 7.8E-10 2.7E-14 62.8 0.3 20 81-100 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.7 0.0014 4.7E-08 41.9 3.6 39 51-89 18-56 (70)
80 2glo_A Brinker CG9653-PA; prot 90.9 0.29 9.9E-06 29.3 3.8 46 43-89 3-48 (59)
81 1hlv_A CENP-B, major centromer 89.4 0.82 2.8E-05 31.3 5.7 48 42-92 4-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 89.2 1.2 4.1E-05 28.7 6.1 45 40-89 17-61 (87)
83 1tc3_C Protein (TC3 transposas 87.2 1.5 5E-05 24.0 4.9 40 45-89 5-44 (51)
84 3hug_A RNA polymerase sigma fa 86.3 0.78 2.7E-05 29.7 3.8 47 46-97 38-84 (92)
85 1jko_C HIN recombinase, DNA-in 85.8 0.55 1.9E-05 26.3 2.5 41 46-91 6-46 (52)
86 2o8x_A Probable RNA polymerase 85.1 0.98 3.4E-05 27.2 3.6 49 45-98 15-63 (70)
87 3c57_A Two component transcrip 84.3 1.6 5.5E-05 28.5 4.6 49 44-98 26-74 (95)
88 1p4w_A RCSB; solution structur 82.9 2.1 7.2E-05 28.5 4.8 44 44-93 33-76 (99)
89 1je8_A Nitrate/nitrite respons 82.4 1.4 4.7E-05 28.0 3.6 47 44-96 20-66 (82)
90 2p7v_B Sigma-70, RNA polymeras 79.5 2.3 7.7E-05 25.7 3.7 52 45-97 5-56 (68)
91 1fse_A GERE; helix-turn-helix 77.8 2.7 9.4E-05 25.4 3.7 46 44-95 10-55 (74)
92 3ulq_B Transcriptional regulat 77.7 3.3 0.00011 26.9 4.3 46 42-93 26-71 (90)
93 2jn6_A Protein CGL2762, transp 77.7 3.7 0.00013 26.5 4.6 42 43-88 3-45 (97)
94 2rnj_A Response regulator prot 77.5 1.5 5.2E-05 28.3 2.5 47 44-96 28-74 (91)
95 1ku3_A Sigma factor SIGA; heli 77.4 3.2 0.00011 25.4 4.0 50 45-95 10-59 (73)
96 1x3u_A Transcriptional regulat 77.4 1.9 6.4E-05 26.6 2.9 45 46-96 17-61 (79)
97 1fi6_A EH domain protein REPS1 75.0 3.6 0.00012 26.3 3.9 44 45-88 2-50 (92)
98 1iuf_A Centromere ABP1 protein 74.9 4.7 0.00016 28.4 4.8 51 40-90 6-60 (144)
99 2lv7_A Calcium-binding protein 74.8 5.3 0.00018 26.2 4.8 46 43-88 27-79 (100)
100 1s7o_A Hypothetical UPF0122 pr 74.4 3.9 0.00013 27.8 4.1 47 45-96 22-68 (113)
101 1tty_A Sigma-A, RNA polymerase 74.2 3.5 0.00012 26.3 3.7 50 45-97 18-69 (87)
102 2pmy_A RAS and EF-hand domain- 73.8 2.3 7.9E-05 26.9 2.7 45 44-88 19-68 (91)
103 3mzy_A RNA polymerase sigma-H 73.4 3.3 0.00011 28.6 3.6 46 46-97 110-155 (164)
104 2lfw_A PHYR sigma-like domain; 71.7 4.3 0.00015 28.6 3.9 50 45-99 93-142 (157)
105 1xsv_A Hypothetical UPF0122 pr 69.7 5 0.00017 27.1 3.7 47 45-96 25-71 (113)
106 1c07_A Protein (epidermal grow 69.4 4.5 0.00016 26.0 3.4 44 45-88 3-51 (95)
107 2x48_A CAG38821; archeal virus 68.8 6 0.00021 22.5 3.5 36 48-88 18-53 (55)
108 1or7_A Sigma-24, RNA polymeras 67.0 5.6 0.00019 28.4 3.8 48 46-98 141-188 (194)
109 2rn7_A IS629 ORFA; helix, all 66.6 11 0.00038 24.6 5.0 46 43-88 4-52 (108)
110 1rp3_A RNA polymerase sigma fa 65.6 5.9 0.0002 29.1 3.8 47 46-97 188-234 (239)
111 2q24_A Putative TETR family tr 64.2 3.6 0.00012 29.1 2.3 40 50-91 20-59 (194)
112 2q0o_A Probable transcriptiona 63.7 8.3 0.00029 29.0 4.4 46 43-94 173-218 (236)
113 1u78_A TC3 transposase, transp 61.3 13 0.00043 25.1 4.6 41 44-89 5-45 (141)
114 3i5g_B Myosin regulatory light 60.8 21 0.00072 24.7 5.8 46 42-87 6-58 (153)
115 2k27_A Paired box protein PAX- 60.6 39 0.0013 23.4 7.3 41 44-89 24-64 (159)
116 2xi8_A Putative transcription 59.7 5.2 0.00018 23.2 2.0 23 69-91 17-39 (66)
117 2qko_A Possible transcriptiona 59.2 4.6 0.00016 29.1 2.1 41 51-92 34-74 (215)
118 3bd1_A CRO protein; transcript 58.8 5 0.00017 24.7 1.9 24 69-92 14-37 (79)
119 3clo_A Transcriptional regulat 58.3 11 0.00039 28.7 4.3 47 44-96 196-242 (258)
120 2r1j_L Repressor protein C2; p 58.2 5.7 0.0002 23.1 2.1 24 69-92 21-44 (68)
121 1l3l_A Transcriptional activat 57.3 12 0.0004 28.1 4.2 46 43-94 171-216 (234)
122 2hin_A GP39, repressor protein 57.2 5.8 0.0002 24.8 2.0 24 69-92 13-36 (71)
123 1zug_A Phage 434 CRO protein; 56.9 6.1 0.00021 23.3 2.0 24 69-92 19-42 (71)
124 3bs3_A Putative DNA-binding pr 55.8 6.7 0.00023 23.5 2.1 23 69-91 26-48 (76)
125 2jpc_A SSRB; DNA binding prote 55.6 6 0.0002 22.9 1.8 40 50-95 3-42 (61)
126 1j7q_A CAVP, calcium vector pr 54.6 24 0.00083 21.3 4.8 45 44-88 6-60 (86)
127 3qp6_A CVIR transcriptional re 54.4 23 0.00079 27.2 5.5 46 44-95 196-241 (265)
128 3omt_A Uncharacterized protein 53.6 7.7 0.00026 23.2 2.1 23 69-91 24-46 (73)
129 1adr_A P22 C2 repressor; trans 53.5 7.5 0.00026 23.2 2.1 24 69-92 21-44 (76)
130 1r69_A Repressor protein CI; g 52.6 7.9 0.00027 22.6 2.0 24 69-92 17-40 (69)
131 2ktg_A Calmodulin, putative; e 52.4 22 0.00074 21.3 4.2 45 44-88 6-57 (85)
132 1pdn_C Protein (PRD paired); p 52.4 29 0.00099 22.5 5.2 40 45-89 17-56 (128)
133 1eh2_A EPS15; calcium binding, 52.1 28 0.00096 22.9 5.0 45 44-88 7-55 (106)
134 2qwt_A Transcriptional regulat 52.0 8.9 0.0003 27.2 2.6 38 51-90 19-56 (196)
135 2b5a_A C.BCLI; helix-turn-heli 51.7 8.4 0.00029 23.1 2.1 23 69-91 26-48 (77)
136 2rgt_A Fusion of LIM/homeobox 51.1 0.13 4.6E-06 37.5 -7.6 30 37-66 134-163 (169)
137 3kz3_A Repressor protein CI; f 51.1 8.6 0.00029 23.6 2.1 24 69-92 28-51 (80)
138 2opo_A Polcalcin CHE A 3; calc 50.8 17 0.00059 21.9 3.6 44 45-88 4-53 (86)
139 2hxi_A Putative transcriptiona 50.6 11 0.00037 28.4 3.0 46 45-91 28-74 (241)
140 2q1z_A RPOE, ECF SIGE; ECF sig 50.6 3.4 0.00012 29.3 0.1 27 71-97 156-182 (184)
141 1iq3_A Ralbp1-interacting prot 50.5 7.7 0.00026 25.9 1.9 45 44-88 14-63 (110)
142 3dtp_E RLC, myosin regulatory 50.2 41 0.0014 23.8 6.1 46 43-88 48-100 (196)
143 1dtl_A Cardiac troponin C; hel 49.8 30 0.001 23.1 5.0 46 43-88 9-62 (161)
144 3fiw_A Putative TETR-family tr 49.6 8.7 0.0003 28.2 2.3 47 45-92 24-71 (211)
145 1avs_A Troponin C; muscle cont 49.5 21 0.00072 21.8 3.9 44 45-88 13-63 (90)
146 2kpj_A SOS-response transcript 49.5 9.2 0.00031 24.3 2.1 24 69-92 25-48 (94)
147 1y7y_A C.AHDI; helix-turn-heli 49.2 9.8 0.00034 22.5 2.1 23 69-91 29-51 (74)
148 2kgr_A Intersectin-1; structur 49.0 22 0.00074 23.5 4.0 45 44-88 6-55 (111)
149 2a6c_A Helix-turn-helix motif; 48.9 10 0.00034 23.6 2.2 23 69-91 34-56 (83)
150 2bnk_A Early protein GP16.7; D 48.5 25 0.00086 21.3 3.7 53 46-98 5-57 (67)
151 3t72_q RNA polymerase sigma fa 48.4 22 0.00077 23.4 3.9 52 45-97 19-70 (99)
152 3u0k_A Rcamp; fluorescent prot 48.3 27 0.00091 29.6 5.2 46 43-88 293-345 (440)
153 1u78_A TC3 transposase, transp 48.3 36 0.0012 22.7 5.2 44 45-92 60-105 (141)
154 2k27_A Paired box protein PAX- 47.9 39 0.0013 23.4 5.5 46 44-89 82-134 (159)
155 1pdn_C Protein (PRD paired); p 47.2 24 0.00081 23.0 4.0 45 45-89 75-126 (128)
156 3g7r_A Putative transcriptiona 47.1 9.8 0.00033 27.6 2.2 40 51-91 41-80 (221)
157 3b7h_A Prophage LP1 protein 11 47.1 10 0.00036 22.7 2.0 23 69-91 23-45 (78)
158 3szt_A QCSR, quorum-sensing co 47.0 22 0.00076 26.7 4.3 44 44-93 174-217 (237)
159 1k78_A Paired box protein PAX5 46.1 59 0.002 22.1 6.1 41 44-89 31-71 (149)
160 2ofy_A Putative XRE-family tra 46.0 34 0.0012 20.9 4.4 23 69-91 30-52 (86)
161 2joj_A Centrin protein; N-term 45.7 16 0.00056 21.4 2.7 43 46-88 1-50 (77)
162 2k9q_A Uncharacterized protein 45.6 12 0.0004 22.7 2.1 23 69-91 18-40 (77)
163 2wiu_B HTH-type transcriptiona 45.3 14 0.00046 22.8 2.4 24 69-92 28-51 (88)
164 1rzs_A Antirepressor, regulato 45.0 9.7 0.00033 22.5 1.5 19 69-87 13-31 (61)
165 3ccy_A Putative TETR-family tr 45.0 14 0.00047 26.2 2.7 40 50-90 19-58 (203)
166 2rae_A Transcriptional regulat 44.7 15 0.00051 25.9 2.8 40 51-91 23-62 (207)
167 3c3w_A Two component transcrip 44.7 14 0.00047 27.1 2.7 45 44-94 148-192 (225)
168 2hxo_A Putative TETR-family tr 44.5 22 0.00075 26.5 3.9 47 44-91 14-61 (237)
169 2ict_A Antitoxin HIGA; helix-t 44.4 12 0.00042 23.6 2.1 23 69-91 24-46 (94)
170 2kvr_A Ubiquitin carboxyl-term 44.2 7.8 0.00027 27.1 1.2 23 69-91 72-94 (130)
171 1j9i_A GPNU1 DBD;, terminase s 44.1 13 0.00044 22.4 2.0 21 69-89 5-25 (68)
172 3fia_A Intersectin-1; EH 1 dom 43.7 33 0.0011 23.6 4.4 44 43-86 24-72 (121)
173 2ef8_A C.ECOT38IS, putative tr 43.7 13 0.00045 22.5 2.1 23 69-91 26-48 (84)
174 2hku_A A putative transcriptio 43.3 8.9 0.00031 27.5 1.4 39 51-91 26-64 (215)
175 3dcf_A Transcriptional regulat 43.1 11 0.00036 26.7 1.8 40 51-91 37-76 (218)
176 3kkd_A Transcriptional regulat 43.0 8.8 0.0003 28.0 1.4 40 51-91 41-80 (237)
177 3f6w_A XRE-family like protein 42.9 14 0.00046 22.6 2.1 23 69-91 30-52 (83)
178 3jsj_A Putative TETR-family tr 41.7 12 0.00041 26.0 1.9 40 50-91 14-53 (190)
179 2lhi_A Calmodulin, serine/thre 41.7 21 0.00072 25.3 3.2 45 43-87 2-53 (176)
180 2rek_A Putative TETR-family tr 41.7 8.9 0.0003 27.0 1.2 38 51-90 22-59 (199)
181 3fmy_A HTH-type transcriptiona 41.1 17 0.0006 21.9 2.4 41 44-91 9-49 (73)
182 3fwb_A Cell division control p 41.1 57 0.002 21.6 5.4 47 42-88 13-66 (161)
183 1k78_A Paired box protein PAX5 41.0 82 0.0028 21.3 7.2 47 44-90 89-142 (149)
184 3bni_A Putative TETR-family tr 40.8 7.5 0.00026 28.4 0.6 39 51-90 49-87 (229)
185 2v57_A TETR family transcripti 40.8 7.8 0.00027 27.0 0.7 38 51-91 20-57 (190)
186 3t76_A VANU, transcriptional r 40.6 15 0.00052 23.5 2.1 23 69-91 40-62 (88)
187 2qtq_A Transcriptional regulat 40.2 19 0.00063 25.3 2.7 41 50-91 21-61 (213)
188 1lmb_3 Protein (lambda repress 39.9 16 0.00054 22.8 2.1 23 69-91 33-55 (92)
189 3qrx_A Centrin; calcium-bindin 39.8 44 0.0015 22.5 4.6 48 40-87 16-70 (169)
190 3o9x_A Uncharacterized HTH-typ 39.1 25 0.00084 23.7 3.1 22 70-91 88-109 (133)
191 3kz9_A SMCR; transcriptional r 39.0 15 0.00053 25.5 2.1 40 51-91 23-62 (206)
192 3qq6_A HTH-type transcriptiona 38.9 17 0.00059 22.2 2.1 21 69-89 26-46 (78)
193 1x57_A Endothelial differentia 38.6 17 0.00058 22.7 2.0 23 69-91 29-51 (91)
194 1a04_A Nitrate/nitrite respons 38.5 27 0.00091 25.0 3.4 45 44-94 153-197 (215)
195 1irz_A ARR10-B; helix-turn-hel 38.2 68 0.0023 19.6 4.8 59 39-97 3-63 (64)
196 3s8q_A R-M controller protein; 38.2 18 0.00061 22.0 2.1 23 69-91 27-49 (82)
197 3lsg_A Two-component response 38.2 23 0.00077 22.7 2.7 23 67-89 20-42 (103)
198 3bdn_A Lambda repressor; repre 38.2 16 0.00055 27.1 2.2 23 69-91 33-55 (236)
199 2mys_C Myosin; muscle protein, 38.0 53 0.0018 21.4 4.7 43 46-88 2-51 (149)
200 1wdc_B Scallop myosin; calcium 37.9 70 0.0024 21.2 5.4 46 44-89 10-62 (156)
201 2l49_A C protein; P2 bacteriop 37.8 18 0.00061 22.8 2.1 24 69-92 20-43 (99)
202 2mys_B Myosin; muscle protein, 37.4 62 0.0021 21.7 5.1 45 45-89 18-70 (166)
203 1l0o_C Sigma factor; bergerat 37.4 7 0.00024 28.7 0.0 43 46-93 199-241 (243)
204 2pij_A Prophage PFL 6 CRO; tra 37.3 19 0.00064 21.0 2.0 22 69-90 16-37 (67)
205 2i10_A Putative TETR transcrip 37.3 27 0.00093 24.7 3.2 42 49-91 15-56 (202)
206 2cqq_A RSGI RUH-037, DNAJ homo 36.8 74 0.0025 19.6 5.3 45 44-88 9-53 (72)
207 2ovk_B RLC, myosin regulatory 36.8 52 0.0018 21.8 4.5 47 42-88 6-59 (153)
208 2fq4_A Transcriptional regulat 36.6 12 0.00042 26.3 1.2 42 51-93 18-59 (192)
209 2kn2_A Calmodulin; S MAPK phos 36.4 37 0.0013 20.6 3.5 42 47-88 4-52 (92)
210 2g7l_A TETR-family transcripti 36.3 25 0.00086 26.3 3.0 46 46-92 19-65 (243)
211 2iai_A Putative transcriptiona 36.0 42 0.0014 24.2 4.2 41 50-91 35-75 (230)
212 3i5g_C Myosin catalytic light 35.7 33 0.0011 23.8 3.4 42 45-86 2-52 (159)
213 2jml_A DNA binding domain/tran 35.7 17 0.00057 22.7 1.6 20 69-88 8-27 (81)
214 2wui_A MEXZ, transcriptional r 35.7 17 0.00057 26.0 1.9 41 51-92 17-57 (210)
215 3vib_A MTRR; helix-turn-helix 35.6 12 0.00041 26.7 1.0 40 51-91 16-55 (210)
216 1t33_A Putative transcriptiona 34.9 14 0.00049 26.3 1.4 39 51-91 18-56 (224)
217 3f1b_A TETR-like transcription 34.8 12 0.00041 26.1 0.9 40 51-91 20-59 (203)
218 1aih_A HP1 integrase; DNA inte 34.8 86 0.0029 21.4 5.6 41 42-82 3-43 (170)
219 3q0w_A HTH-type transcriptiona 34.6 12 0.0004 27.4 0.9 40 51-91 50-89 (236)
220 2ppx_A AGR_C_3184P, uncharacte 34.6 22 0.00074 22.7 2.1 23 69-91 46-68 (99)
221 2w53_A Repressor, SMet; antibi 34.5 20 0.00068 25.6 2.1 41 50-91 16-56 (219)
222 3rd3_A Probable transcriptiona 34.3 16 0.00054 25.3 1.5 41 51-92 16-56 (197)
223 3on2_A Probable transcriptiona 34.1 12 0.00043 25.9 0.9 41 50-91 17-57 (199)
224 3v6g_A Probable transcriptiona 34.1 17 0.0006 26.2 1.8 40 51-91 20-59 (208)
225 3aqt_A Bacterial regulatory pr 33.9 6 0.00021 29.4 -0.9 40 51-91 52-91 (245)
226 2ewt_A BLDD, putative DNA-bind 33.8 24 0.0008 20.6 2.1 23 69-91 24-48 (71)
227 3nxc_A HTH-type protein SLMA; 33.5 13 0.00044 26.2 0.9 34 57-91 37-70 (212)
228 1uxc_A FRUR (1-57), fructose r 33.4 25 0.00086 21.2 2.1 23 69-91 3-25 (65)
229 2g7g_A RHA04620, putative tran 32.9 19 0.00065 26.2 1.8 39 51-92 17-55 (213)
230 3he0_A Transcriptional regulat 32.8 24 0.00081 24.4 2.2 42 49-91 15-56 (196)
231 3f0c_A TETR-molecule A, transc 32.7 20 0.00067 25.4 1.8 40 51-91 17-56 (216)
232 3dew_A Transcriptional regulat 32.5 13 0.00043 25.9 0.7 40 51-91 14-53 (206)
233 3g1o_A Transcriptional regulat 32.3 14 0.00048 27.3 1.0 40 51-91 49-88 (255)
234 2np5_A Transcriptional regulat 31.9 14 0.00047 26.3 0.8 40 51-91 15-54 (203)
235 2xdn_A HTH-type transcriptiona 31.8 28 0.00096 24.6 2.6 40 51-91 17-56 (210)
236 3ppb_A Putative TETR family tr 31.7 31 0.0011 23.6 2.7 41 50-91 14-54 (195)
237 3op9_A PLI0006 protein; struct 31.5 25 0.00085 22.9 2.1 24 69-92 25-48 (114)
238 2zcx_A SCO7815, TETR-family tr 31.4 17 0.00058 26.8 1.3 40 51-91 29-68 (231)
239 3gzi_A Transcriptional regulat 31.4 35 0.0012 24.0 3.0 40 51-91 23-62 (218)
240 2dg7_A Putative transcriptiona 31.3 24 0.0008 24.6 2.0 41 51-92 13-53 (195)
241 2pjp_A Selenocysteine-specific 31.2 27 0.00094 23.5 2.3 42 47-89 2-43 (121)
242 2dg8_A Putative TETR-family tr 30.7 17 0.0006 25.4 1.2 41 50-91 14-54 (193)
243 1y66_A Engrailed homeodomain; 30.6 7.8 0.00027 22.0 -0.5 43 47-89 5-47 (52)
244 2v79_A DNA replication protein 30.6 62 0.0021 22.4 4.1 42 46-90 30-75 (135)
245 3bqz_B HTH-type transcriptiona 30.5 30 0.001 23.8 2.4 40 50-90 7-46 (194)
246 3j04_B Myosin regulatory light 30.4 99 0.0034 19.9 5.1 43 46-88 1-50 (143)
247 3cwr_A Transcriptional regulat 30.3 12 0.00042 26.1 0.3 40 51-91 23-62 (208)
248 2qib_A TETR-family transcripti 30.2 11 0.00039 27.4 0.1 40 51-91 19-58 (231)
249 2zcm_A Biofilm operon icaabcd 30.2 30 0.001 24.0 2.5 41 50-91 12-52 (192)
250 3vpr_A Transcriptional regulat 30.2 30 0.001 24.0 2.4 41 51-92 9-49 (190)
251 2oi8_A Putative regulatory pro 30.1 17 0.00057 26.5 1.0 39 51-90 22-60 (216)
252 3vk0_A NHTF, transcriptional r 30.1 27 0.00093 22.9 2.1 23 69-91 37-59 (114)
253 2iu5_A DHAS, YCEG, HTH-type dh 29.9 27 0.00093 24.4 2.2 40 51-91 19-58 (195)
254 3bru_A Regulatory protein, TET 29.9 34 0.0012 24.2 2.7 40 51-91 36-75 (222)
255 1ity_A TRF1; helix-turn-helix, 29.8 87 0.003 18.7 4.3 46 37-85 4-52 (69)
256 3g5g_A Regulatory protein; tra 29.8 29 0.00099 22.4 2.1 23 69-91 44-66 (99)
257 3qbm_A TETR transcriptional re 29.8 26 0.0009 24.1 2.1 40 51-91 13-52 (199)
258 3him_A Probable transcriptiona 29.6 19 0.00066 25.1 1.3 41 50-91 21-61 (211)
259 3mlf_A Transcriptional regulat 29.5 29 0.001 22.8 2.1 23 69-91 39-61 (111)
260 3eus_A DNA-binding protein; st 29.4 31 0.001 21.4 2.1 23 69-91 30-52 (86)
261 2jvl_A TRMBF1; coactivator, he 29.4 29 0.00099 22.7 2.1 24 69-92 52-75 (107)
262 2yve_A Transcriptional regulat 29.2 34 0.0012 23.8 2.6 40 50-90 9-48 (185)
263 2hyt_A TETR-family transcripti 29.1 36 0.0012 23.8 2.7 39 51-90 18-56 (197)
264 1exr_A Calmodulin; high resolu 28.6 89 0.0031 20.5 4.6 43 45-87 3-52 (148)
265 3gyk_A 27KDA outer membrane pr 28.5 79 0.0027 21.7 4.5 43 51-93 85-127 (175)
266 2pz9_A Putative regulatory pro 28.4 10 0.00036 27.5 -0.4 40 51-91 36-75 (226)
267 1qjt_A EH1, epidermal growth f 28.2 27 0.00092 22.5 1.7 37 52-88 11-52 (99)
268 2cw1_A SN4M; lambda CRO fold, 28.1 29 0.001 21.1 1.8 22 68-89 15-36 (65)
269 3cec_A Putative antidote prote 27.6 32 0.0011 22.0 2.1 23 69-91 34-56 (104)
270 2d6y_A Putative TETR family re 27.5 35 0.0012 24.1 2.4 40 51-91 14-53 (202)
271 2l8n_A Transcriptional repress 27.4 34 0.0012 20.7 2.0 23 69-91 12-34 (67)
272 3i9v_2 NADH-quinone oxidoreduc 27.4 65 0.0022 23.6 3.9 34 50-83 27-60 (181)
273 2fd5_A Transcriptional regulat 27.3 42 0.0014 22.9 2.7 40 51-91 13-52 (180)
274 2fjr_A Repressor protein CI; g 27.3 48 0.0016 23.5 3.1 25 68-92 22-46 (189)
275 3qkx_A Uncharacterized HTH-typ 27.2 41 0.0014 22.8 2.7 40 51-91 14-53 (188)
276 3lwj_A Putative TETR-family tr 27.2 34 0.0012 23.7 2.3 40 51-91 18-57 (202)
277 3klo_A Transcriptional regulat 27.1 58 0.002 23.4 3.6 43 45-93 159-201 (225)
278 1sgm_A Putative HTH-type trans 27.1 38 0.0013 23.1 2.5 40 50-90 11-51 (191)
279 1b0n_A Protein (SINR protein); 27.0 34 0.0012 21.8 2.1 21 69-89 17-37 (111)
280 2kz5_A Transcription factor NF 27.0 69 0.0024 21.0 3.5 33 64-96 43-76 (91)
281 3knw_A Putative transcriptiona 27.0 35 0.0012 23.9 2.3 40 51-91 20-59 (212)
282 3anp_C Transcriptional repress 26.9 38 0.0013 23.8 2.5 40 51-91 15-54 (204)
283 1pb6_A Hypothetical transcript 26.7 36 0.0012 23.8 2.3 40 51-91 24-63 (212)
284 1yx7_A Calsensin, LAN3-6 antig 26.6 37 0.0013 20.1 2.1 34 52-85 7-49 (83)
285 2eby_A Putative HTH-type trans 26.6 34 0.0012 22.2 2.1 23 69-91 27-49 (113)
286 3b81_A Transcriptional regulat 26.5 33 0.0011 23.8 2.1 39 51-90 17-55 (203)
287 1yio_A Response regulatory pro 26.4 62 0.0021 22.8 3.6 43 46-94 143-185 (208)
288 3ivp_A Putative transposon-rel 26.4 35 0.0012 22.7 2.1 23 69-91 28-50 (126)
289 2ras_A Transcriptional regulat 26.2 31 0.0011 24.3 1.9 40 51-91 17-56 (212)
290 2x7l_M HIV REV; nuclear export 25.9 32 0.0011 23.6 1.7 34 52-99 16-49 (115)
291 3f52_A CLP gene regulator (CLG 25.8 36 0.0012 22.2 2.1 23 69-91 44-66 (117)
292 3lhq_A Acrab operon repressor 25.7 38 0.0013 23.6 2.3 40 51-91 20-59 (220)
293 3oio_A Transcriptional regulat 25.7 61 0.0021 20.9 3.2 23 67-89 24-46 (113)
294 2ao9_A Phage protein; structur 25.6 49 0.0017 23.8 2.9 47 43-89 21-71 (155)
295 3col_A Putative transcription 25.6 19 0.00064 24.8 0.6 41 50-91 15-55 (196)
296 3c07_A Putative TETR-family tr 25.6 41 0.0014 25.4 2.6 40 51-91 47-86 (273)
297 2o7t_A Transcriptional regulat 25.5 31 0.0011 24.1 1.8 39 51-90 14-52 (199)
298 2f07_A YVDT; helix-turn-helix, 25.5 45 0.0015 23.4 2.7 41 50-91 15-55 (197)
299 2jrt_A Uncharacterized protein 25.4 1E+02 0.0035 20.0 4.2 40 44-88 31-71 (95)
300 4ds7_A Calmodulin, CAM; protei 25.3 94 0.0032 20.0 4.2 44 44-87 3-53 (147)
301 2guh_A Putative TETR-family tr 25.2 17 0.0006 26.3 0.4 41 51-92 45-85 (214)
302 3mn2_A Probable ARAC family tr 25.0 58 0.002 20.8 3.0 22 68-89 20-41 (108)
303 1neq_A DNA-binding protein NER 24.8 34 0.0012 21.0 1.7 21 69-89 25-45 (74)
304 1g2h_A Transcriptional regulat 24.8 1.1E+02 0.0037 17.8 4.7 38 45-87 17-54 (61)
305 2eh3_A Transcriptional regulat 24.7 41 0.0014 23.0 2.3 40 51-91 8-47 (179)
306 3lfp_A CSP231I C protein; tran 24.6 41 0.0014 21.2 2.1 23 69-91 17-43 (98)
307 3trb_A Virulence-associated pr 24.6 40 0.0014 22.1 2.1 37 53-92 17-53 (104)
308 1vi0_A Transcriptional regulat 24.5 27 0.00093 24.8 1.3 39 51-90 14-52 (206)
309 3cdl_A Transcriptional regulat 24.4 38 0.0013 23.8 2.1 41 51-92 15-55 (203)
310 3mse_B Calcium-dependent prote 24.3 69 0.0024 22.1 3.5 41 48-88 35-80 (180)
311 3vp5_A Transcriptional regulat 24.3 49 0.0017 23.0 2.7 39 51-90 18-56 (189)
312 1qgp_A Protein (double strande 24.3 25 0.00086 21.9 1.0 37 51-88 17-53 (77)
313 2of7_A Putative TETR-family tr 24.2 39 0.0013 25.0 2.2 41 51-92 54-94 (260)
314 3s5r_A Transcriptional regulat 24.1 33 0.0011 24.1 1.7 41 50-91 15-55 (216)
315 3nrg_A TETR family transcripti 24.1 40 0.0014 23.6 2.1 40 51-91 19-58 (217)
316 3crj_A Transcription regulator 23.9 38 0.0013 23.8 2.0 39 51-90 20-58 (199)
317 2ibd_A Possible transcriptiona 23.8 42 0.0014 23.5 2.3 40 51-91 20-59 (204)
318 3m62_B UV excision repair prot 23.8 27 0.00092 23.0 1.1 26 69-94 28-53 (106)
319 3iz6_M 40S ribosomal protein S 23.8 34 0.0012 24.6 1.7 29 63-91 58-87 (152)
320 3kkc_A TETR family transcripti 23.7 36 0.0012 23.1 1.8 41 51-92 18-58 (177)
321 1zk8_A Transcriptional regulat 23.5 31 0.0011 23.6 1.5 40 51-91 14-53 (183)
322 3egq_A TETR family transcripti 23.4 31 0.001 23.4 1.4 40 51-91 10-49 (170)
323 1r8d_A Transcription activator 23.4 40 0.0014 22.2 1.9 20 69-88 5-24 (109)
324 1s6c_A KV4 potassium channel-i 23.4 1.3E+02 0.0044 20.4 4.8 45 44-88 13-63 (183)
325 2gwr_A DNA-binding response re 23.2 1.1E+02 0.0036 22.2 4.5 50 44-95 152-206 (238)
326 2vz4_A Tipal, HTH-type transcr 23.1 41 0.0014 22.1 1.9 20 69-88 4-23 (108)
327 3dpj_A Transcription regulator 23.1 46 0.0016 22.9 2.3 40 51-91 14-53 (194)
328 2oer_A Probable transcriptiona 23.0 52 0.0018 23.3 2.6 35 56-91 35-69 (214)
329 2iw5_B Protein corest, REST co 23.0 2.1E+02 0.0072 22.0 6.1 52 39-93 129-180 (235)
330 3qqa_A CMER; alpha-helical, he 22.9 38 0.0013 23.7 1.9 40 51-91 25-64 (216)
331 2zb9_A Putative transcriptiona 22.7 32 0.0011 24.3 1.4 40 51-91 29-68 (214)
332 2jnf_A Troponin C; stretch act 22.6 1.2E+02 0.0042 19.8 4.4 45 44-88 5-57 (158)
333 1rkt_A Protein YFIR; transcrip 22.6 42 0.0014 23.6 2.0 39 51-90 18-56 (205)
334 3bjb_A Probable transcriptiona 22.5 38 0.0013 24.1 1.8 41 51-92 28-68 (207)
335 3c2b_A Transcriptional regulat 22.5 34 0.0012 24.2 1.5 41 51-92 21-61 (221)
336 3lph_A Protein REV; helix-loop 22.4 53 0.0018 20.6 2.1 34 51-98 18-51 (72)
337 8tfv_A Protein (thanatin); bac 22.4 14 0.00048 17.2 -0.4 14 80-93 3-16 (21)
338 2nx4_A Transcriptional regulat 22.3 48 0.0017 23.1 2.3 40 51-91 16-55 (194)
339 1wj7_A Hypothetical protein (R 22.2 1.8E+02 0.0062 19.4 5.5 45 41-86 15-60 (104)
340 2g7s_A Transcriptional regulat 21.9 34 0.0012 23.4 1.4 40 51-91 14-53 (194)
341 3on4_A Transcriptional regulat 21.9 43 0.0015 22.8 1.9 40 51-91 16-55 (191)
342 2gqb_A Conserved hypothetical 21.9 72 0.0025 22.3 2.9 32 62-93 79-115 (130)
343 1p2f_A Response regulator; DRR 21.8 1E+02 0.0034 21.9 4.0 50 44-95 144-196 (220)
344 1ui5_A A-factor receptor homol 21.4 51 0.0017 23.5 2.3 41 50-91 14-54 (215)
345 3ox6_A Calcium-binding protein 21.2 1.7E+02 0.0058 18.7 5.6 43 45-87 4-53 (153)
346 2d1h_A ST1889, 109AA long hypo 21.0 1.3E+02 0.0044 18.5 4.1 41 45-88 18-58 (109)
347 1jhf_A LEXA repressor; LEXA SO 21.0 28 0.00095 25.3 0.8 40 46-88 4-48 (202)
348 3npi_A TETR family regulatory 20.8 21 0.00073 26.2 0.1 40 51-91 24-63 (251)
349 2o38_A Hypothetical protein; a 20.8 52 0.0018 22.1 2.1 23 69-91 56-78 (120)
350 2np3_A Putative TETR-family re 20.7 20 0.00069 25.4 -0.1 39 51-90 36-74 (212)
351 3kxa_A NGO0477 protein, putati 20.6 52 0.0018 22.7 2.1 22 70-91 85-106 (141)
352 2gen_A Probable transcriptiona 20.6 61 0.0021 22.6 2.5 40 51-91 13-52 (197)
353 3mvp_A TETR/ACRR transcription 20.5 22 0.00074 25.0 0.0 40 51-91 32-71 (217)
354 1l9z_H Sigma factor SIGA; heli 20.4 91 0.0031 26.1 3.9 49 46-95 376-424 (438)
355 1tuz_A Diacylglycerol kinase a 20.3 42 0.0014 22.9 1.5 27 63-89 7-33 (118)
356 1qbj_A Protein (double-strande 20.2 44 0.0015 21.1 1.5 35 50-88 12-49 (81)
357 3pas_A TETR family transcripti 20.1 43 0.0015 22.8 1.6 38 53-91 16-53 (195)
358 3k2z_A LEXA repressor; winged 20.1 83 0.0028 22.7 3.3 41 46-88 3-46 (196)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=135.16 Aligned_cols=68 Identities=32% Similarity=0.535 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 33 TQTPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 33 ~~~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
...+++.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+..+.
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 34566788899999999999999999999999999999999999999999999999999999998753
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=5.2e-22 Score=132.95 Aligned_cols=68 Identities=35% Similarity=0.550 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDV 103 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~~ 103 (165)
.++.++.|+.|+.+|+.+||..|+.++||+..++++||.+|||++.+|++||||||+|+|++......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 45678899999999999999999999999999999999999999999999999999999998865443
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=132.52 Aligned_cols=65 Identities=45% Similarity=0.767 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
..++.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 45677888999999999999999999999999999999999999999999999999999999865
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=8.3e-22 Score=128.77 Aligned_cols=64 Identities=33% Similarity=0.544 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
..+.+++|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 4567788999999999999999999999999999999999999999999999999999999864
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=131.98 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 33 TQTPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 33 ~~~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
...+++.++.|+.|+.+|+.+||..|..++||+..++++||.+|||++.+|++||||||+|+||...
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3445678889999999999999999999999999999999999999999999999999999999864
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=131.04 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
.++.++.|+.|+.+|+.+||..|+.++||+..++++||.+|||++.+|++||||||+|+|++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999997543
No 7
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=127.93 Aligned_cols=66 Identities=30% Similarity=0.394 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
...+.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 345678889999999999999999999999999999999999999999999999999999997653
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.85 E-value=7.7e-22 Score=131.25 Aligned_cols=67 Identities=43% Similarity=0.567 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 34 QTPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 34 ~~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
..+++.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 4567778889999999999999999999999999999999999999999999999999999987543
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=127.22 Aligned_cols=64 Identities=44% Similarity=0.713 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
..+.++.|+.|+.+|+.+||..|+.++||+..++++||.+|||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 3456788999999999999999999999999999999999999999999999999999999865
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=128.20 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
..++.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+..++
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 345678899999999999999999999999999999999999999999999999999999998753
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.85 E-value=9.5e-22 Score=125.55 Aligned_cols=61 Identities=36% Similarity=0.568 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 38 EDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 38 ~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
+.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4578899999999999999999999999999999999999999999999999999999864
No 12
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.85 E-value=3e-21 Score=127.14 Aligned_cols=66 Identities=33% Similarity=0.470 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
..+.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 356788899999999999999999999999999999999999999999999999999999986544
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.85 E-value=3.1e-21 Score=132.78 Aligned_cols=71 Identities=42% Similarity=0.749 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 30 SPNTQTPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 30 ~~~~~~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
+.....+.+.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+....
T Consensus 8 p~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 8 PYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CSTTSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 33345567788899999999999999999999999999999999999999999999999999999997653
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=127.45 Aligned_cols=64 Identities=50% Similarity=0.755 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
..+.++.|+.|+.+|+.+||..|+.++||+..++++||.+|||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4567788999999999999999999999999999999999999999999999999999998764
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=3.2e-21 Score=125.98 Aligned_cols=63 Identities=48% Similarity=0.761 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
.+.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 456678899999999999999999999999999999999999999999999999999999865
No 16
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=130.64 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTT----RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~----~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
..++.++.|+.|+.+|+.+||..|+.+ +||+..++++||.+|||++.+|++||||||+|+|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 456778899999999999999999999 999999999999999999999999999999999997643
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.84 E-value=1.9e-21 Score=124.62 Aligned_cols=61 Identities=46% Similarity=0.787 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 38 EDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 38 ~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
+.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3578899999999999999999999999999999999999999999999999999999975
No 18
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=1.4e-20 Score=128.45 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCCCCC
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNS 105 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~~~~ 105 (165)
.|+.+|+.+||..|..++||+..++++||..|||+++||+|||||||+|+|++++....+.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~~ 77 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDE 77 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhccc
Confidence 7999999999999999999999999999999999999999999999999999876655443
No 19
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=126.33 Aligned_cols=68 Identities=38% Similarity=0.599 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMD 102 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~ 102 (165)
..++.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+.++.+.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 34567788999999999999999999999999999999999999999999999999999999877543
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-21 Score=128.88 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKT----TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~----~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
.++.++.|+.|+.+|+.+||..|+. ++||+..++++||.+|||++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567888999999999999999999 999999999999999999999999999999999875
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.84 E-value=2.3e-21 Score=123.41 Aligned_cols=58 Identities=45% Similarity=0.756 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678999999999999999999999999999999999999999999999999999987
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.84 E-value=3.1e-21 Score=125.45 Aligned_cols=63 Identities=46% Similarity=0.719 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
+++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 467899999999999999999999999999999999999999999999999999999987644
No 23
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=3.8e-21 Score=128.76 Aligned_cols=63 Identities=38% Similarity=0.720 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
.+.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 466788999999999999999999999999999999999999999999999999999999764
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=3.8e-21 Score=121.07 Aligned_cols=58 Identities=59% Similarity=0.858 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 40 LVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5788999999999999999999999999999999999999999999999999999873
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=5.6e-21 Score=124.16 Aligned_cols=63 Identities=44% Similarity=0.590 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 567899999999999999999999999999999999999999999999999999999987654
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.84 E-value=4.2e-21 Score=128.87 Aligned_cols=64 Identities=42% Similarity=0.596 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
.++.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 4567788999999999999999999999999999999999999999999999999999999754
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-21 Score=124.13 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 38 EDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 38 ~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
+.++.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 45788999999999999999999999999999999999999999999999999999998764
No 28
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.83 E-value=5.3e-21 Score=130.22 Aligned_cols=66 Identities=44% Similarity=0.725 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 34 QTPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 34 ~~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
...++.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+..+
T Consensus 23 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 88 (88)
T 2r5y_A 23 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK 88 (88)
T ss_dssp --------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhcC
Confidence 345677889999999999999999999999999999999999999999999999999999998753
No 29
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=124.58 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=56.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 41 VPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 41 ~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
++|..|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|++....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4566799999999999999999999999999999999999999999999999999987643
No 30
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.83 E-value=2.1e-21 Score=126.18 Aligned_cols=64 Identities=36% Similarity=0.662 Sum_probs=60.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 38 EDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 38 ~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
+.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999987654
No 31
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.83 E-value=7.1e-21 Score=127.56 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
...+.++.|+.|+.+|+.+|| .|.. ++||+..++++||.+|||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345678889999999999999 7999 999999999999999999999999999999999876
No 32
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.83 E-value=9e-21 Score=126.05 Aligned_cols=65 Identities=42% Similarity=0.539 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
..++.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+..+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 34567788999999999999999999999999999999999999999999999999999998653
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=4.5e-21 Score=124.61 Aligned_cols=62 Identities=37% Similarity=0.562 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999997543
No 34
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.8e-21 Score=125.79 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=59.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCCCC
Q psy15100 40 LVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 104 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~~~ 104 (165)
.+.|+.|+.+|+.+||..|+.++||+..++++||.+|||++.+|++||||||+|+|+........
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~~~ 73 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRSGP 73 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSCCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCCCC
Confidence 34478999999999999999999999999999999999999999999999999999987654443
No 35
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=6.2e-21 Score=120.98 Aligned_cols=58 Identities=45% Similarity=0.622 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 40 LVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=122.33 Aligned_cols=63 Identities=37% Similarity=0.553 Sum_probs=59.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCC
Q psy15100 40 LVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMD 102 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~ 102 (165)
++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+......
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q 64 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQ 64 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhcc
Confidence 678999999999999999999999999999999999999999999999999999999876543
No 37
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.83 E-value=9.5e-21 Score=127.06 Aligned_cols=63 Identities=35% Similarity=0.607 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
.++.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999874
No 38
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.6e-20 Score=129.63 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------CCchhhhhhhhcchhhhhhhCCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLS---------------LTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------l~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
.++.++.|+.|+.+|+.+||..|+.++||+..++++||.+|+ |++.+|++||||||+|+|++...
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999998765
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.82 E-value=9.2e-21 Score=120.18 Aligned_cols=58 Identities=45% Similarity=0.771 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999998753
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.4e-20 Score=124.53 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
+|..|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..-
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 4566999999999999999999999999999999999999999999999999998753
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=2.2e-20 Score=122.60 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 40 LVPESAFTYEQLVALENKFKT-TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
.++|+.|+.+|+.+||..|+. ++||+..++++||.+|||++.+|++||||||+|+|+....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 467899999999999999996 9999999999999999999999999999999999998753
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=2.7e-20 Score=122.49 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 40 LVPESAFTYEQLVALENKFKT-TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
.+.|+.|+.+|+.+||..|+. ++||+..++++||..|||++.+|++||||||+|+|+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999995 9999999999999999999999999999999999998753
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=117.97 Aligned_cols=57 Identities=54% Similarity=0.711 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
+++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.82 E-value=1.1e-20 Score=120.02 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
++.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999975
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=117.30 Aligned_cols=54 Identities=48% Similarity=0.892 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
+.|+.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999986
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.3e-20 Score=130.55 Aligned_cols=66 Identities=44% Similarity=0.613 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
...+.++.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+..+.
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 345678889999999999999999999999999999999999999999999999999999998654
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=120.87 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=59.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 38 EDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 38 ~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
..++.|+.|+.+|+.+||..|+.++||+..++++||.++||++.+|++||||||+|+|+.....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 3467789999999999999999999999999999999999999999999999999999987543
No 48
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=123.00 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCCCCC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKT---TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNS 105 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~~~~ 105 (165)
..+.+++|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.||++||||||+|+|+.........
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~~~ 76 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRND 76 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCCCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhccCC
Confidence 4567788999999999999999987 599999999999999999999999999999999998765544443
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=6.9e-20 Score=120.48 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKT---TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
..++.++.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 34567788999999999999999987 999999999999999999999999999999999998764
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=122.38 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCC
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMD 102 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~ 102 (165)
.|+.+|+.+||..|..++||+..++++||.+|||++.+|++||||||+|+|+......
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 4899999999999999999999999999999999999999999999999999876543
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=4.9e-20 Score=118.22 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 39 DLVPESAFTYEQLVALENKF---KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
.++.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||+|||+|+||.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46788999999999999999 899999999999999999999999999999999999873
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.79 E-value=1.3e-19 Score=119.18 Aligned_cols=62 Identities=26% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCC
Q psy15100 40 LVPESAFTYEQLVALENKF---KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~ 101 (165)
+++|+.|+.+|+.+||.+| ..++||+..+++.||..+||++.+|++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6788999999999999999 8999999999999999999999999999999999999976543
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=125.85 Aligned_cols=62 Identities=32% Similarity=0.358 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
...+++|+.|+.+|+.+||..|+.++||+..++++||.+|||++.+|++||||||+|+|+..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34557889999999999999999999999999999999999999999999999999999875
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.79 E-value=1.4e-19 Score=114.65 Aligned_cols=56 Identities=36% Similarity=0.414 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 42 PESAFTYEQLVALENKFKT---TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
+|+.|+.+|+.+||..|.. ++||+..++++||.++||++.+|++||+|||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3678999999999999999 9999999999999999999999999999999999985
No 55
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=116.69 Aligned_cols=59 Identities=51% Similarity=0.719 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCCCC
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMD 102 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~~~ 102 (165)
..++..|+.+||..|+.++||+..++++||..|||++++|++||||||+|+|++....+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 45899999999999999999999999999999999999999999999999999875443
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.78 E-value=2.2e-19 Score=121.76 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 40 LVPESAFTYEQLVALENKF---KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
+++|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6788999999999999999 89999999999999999999999999999999999999764
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-19 Score=123.40 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh---------------------CCCchhhhhhhhcchhhh
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSL---------------------SLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~l---------------------gl~~~qV~~WFqNRR~k~ 94 (165)
.++.++.|+.|+..|+.+||+.|+.++||+..+|++||.+| +|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhCC
Q psy15100 95 KKQNP 99 (165)
Q Consensus 95 kr~~~ 99 (165)
|++.+
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 98764
No 58
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.1e-19 Score=119.46 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 40 LVPESAFTYEQLVALENKF-KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F-~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
.+.|..++.+|+.+||..| +.++||+..++++||.+|||++++|++||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3456678889999999999 9999999999999999999999999999999999999865
No 59
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=5.2e-19 Score=113.64 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKT-TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
.++.+|.|+.|+.+||.+|+..|+. +.||+.++|+.||.++||++++|++||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4578899999999999999999999 99999999999999999999999999999997643
No 60
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.77 E-value=2.6e-19 Score=134.99 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
..++++++|+.|+..|+.+||..|..++||+..+|++||..|||++++|++||||||+|+||..+.
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 356778899999999999999999999999999999999999999999999999999999998754
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.77 E-value=3.2e-19 Score=132.12 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
..++.++.|+.|+.+|+.+||..|..++||+..++++||..|||++++|++||||||+|+||++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 3466788899999999999999999999999999999999999999999999999999999863
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.77 E-value=4.8e-19 Score=119.34 Aligned_cols=60 Identities=32% Similarity=0.335 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 40 LVPESAFTYEQLVALENKFKT---TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
+++|++|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 455677999999999999999 999999999999999999999999999999999999764
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.77 E-value=5.2e-19 Score=120.06 Aligned_cols=60 Identities=35% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKT---TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
.+++++|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 445667899999999999999999 999999999999999999999999999999999873
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.77 E-value=3.6e-19 Score=133.67 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
..+.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||+.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 357788999999999999999999999999999999999999999999999999999999863
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.76 E-value=2.9e-19 Score=124.18 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------hC---CCchhhhhhhhcchhh
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALS------------------LS---LTETQVKIWFQNRRTK 93 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~------------------lg---l~~~qV~~WFqNRR~k 93 (165)
..++.++.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45677889999999999999999999999999999999999 88 9999999999999999
Q ss_pred hhhhCCC
Q psy15100 94 WKKQNPG 100 (165)
Q Consensus 94 ~kr~~~~ 100 (165)
+|++...
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 9887643
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.76 E-value=4.2e-19 Score=113.96 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
.+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999999999974
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=130.78 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
.+++++|+|+.|+.+|+.+||..|..++||+..++++||.+|||++.+|++||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34677889999999999999999999999999999999999999999999999999999987
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-19 Score=112.92 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
..++.+|+.+||..|..++||+..++++||.+|||++++|++||||||+|+++.+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 4467899999999999999999999999999999999999999999999988753
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=8.9e-19 Score=112.31 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 48 YEQLVALENKF-KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 48 ~~Ql~~Le~~F-~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
..|+.+||+.| ..++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 34899999999 5689999999999999999999999999999999998754
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.72 E-value=3.8e-18 Score=128.37 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
...+.++.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|++||||||+|+|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 456778899999999999999999999999999999999999999999999999999999987653
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.72 E-value=3.3e-18 Score=127.82 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
++.+++|+.|+..|+.+||..|..++||+..++++||..|||++++|++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5677889999999999999999999999999999999999999999999999999999985
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.9e-17 Score=106.37 Aligned_cols=57 Identities=25% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCCC
Q psy15100 44 SAFTYEQLVALENKFK---TTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~---~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~~ 100 (165)
..|+.+|+.+|+.+|. .++||+..++++||..+||++.||++||+|||+|+|+....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 4699999999999999 99999999999999999999999999999999999987543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.60 E-value=2.1e-16 Score=121.83 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------------CCchhhhhhhhcchhhh
Q psy15100 36 PSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLS---------------------LTETQVKIWFQNRRTKW 94 (165)
Q Consensus 36 ~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------------l~~~qV~~WFqNRR~k~ 94 (165)
.++.||.|+.|+..|+.+||..|+.++||+..+|++||..|+ |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 467788999999999999999999999999999999999999 99999999999999998
Q ss_pred hh
Q psy15100 95 KK 96 (165)
Q Consensus 95 kr 96 (165)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=97.22 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 48 YEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 48 ~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
++|+.+||..|..|.+|+.+++..||..+||.+++|++||||||+..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 46899999999999999999999999999999999999999999853
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=100.93 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 44 SAFTYEQLVALENKFKT---TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
-.|+.+++.+|+.+|.. ++||+.+++++||.++||++.||++||+|+|.|+++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 45899999999999987 89999999999999999999999999999999998754
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=115.95 Aligned_cols=60 Identities=23% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------------CCchhhhhhhhcchhh
Q psy15100 35 TPSEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLS---------------------LTETQVKIWFQNRRTK 93 (165)
Q Consensus 35 ~~~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------------l~~~qV~~WFqNRR~k 93 (165)
..++.||.|+.|+..|+.+||..|+.++||+..+|++||..|| |++.+|++||+|||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4567788999999999999999999999999999999999998 8999999999999987
Q ss_pred h
Q psy15100 94 W 94 (165)
Q Consensus 94 ~ 94 (165)
+
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 5
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.43 E-value=6.2e-14 Score=117.13 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 41 VPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 41 ~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
+.++.|+.+|+..||+.|+.++||+..+|++||.+|||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467799999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.78 E-value=7.8e-10 Score=62.83 Aligned_cols=20 Identities=65% Similarity=1.149 Sum_probs=17.6
Q ss_pred hhhhhhhhcchhhhhhhCCC
Q psy15100 81 TQVKIWFQNRRTKWKKQNPG 100 (165)
Q Consensus 81 ~qV~~WFqNRR~k~kr~~~~ 100 (165)
+||+|||||||+||||++..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999997654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.0014 Score=41.87 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
.++|+.+|...+.+..++...|+.+.+|+..||+.||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 589999999999999999999999999999999999964
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=90.92 E-value=0.29 Score=29.30 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 43 ESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
|..|+.+....+...++.. ........++|.++||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4568888877665555433 322223668999999999999999754
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=89.42 E-value=0.82 Score=31.32 Aligned_cols=48 Identities=10% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
+|..|+.++...+-..+..+..... .+||..+||+...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5678999998877777755555543 35789999999999999987655
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.17 E-value=1.2 Score=28.65 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 40 LVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
++.+..|+.++....-..+.. .. -..+||.++||+...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 445667999886555555543 22 2567899999999999999853
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=87.24 E-value=1.5 Score=23.99 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
.++.++...+...+... . ...+||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555433 2 2567899999999999999864
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=86.32 E-value=0.78 Score=29.72 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
++..+..+|.-.|.... ...+||..||++...|+.+...-|.|.|+.
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 56667777766553332 356789999999999999998777776654
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=85.79 E-value=0.55 Score=26.33 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4455555555555433 2 356789999999999999996543
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=85.14 E-value=0.98 Score=27.17 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
.++..+..+|...|.... ...++|..+|++...|+.+...-+.+.++..
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 477888889988764332 3567899999999999999987666666543
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=84.30 E-value=1.6 Score=28.54 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
..++..+..+|.-.++.. ...+||..||++...|+.+..+-+.|.+...
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 358999999998864322 2467899999999999999987666665543
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=82.91 E-value=2.1 Score=28.47 Aligned_cols=44 Identities=9% Similarity=-0.071 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
..++..++++|.-.++-. ...+||..||+++..|+.+..+-+.|
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 458999999998865422 24789999999999999998765544
No 89
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=82.43 E-value=1.4 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
..++..+.++|.-.+ .. ....+||..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 458999999998843 22 235678999999999999998765555443
No 90
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=79.51 E-value=2.3 Score=25.73 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
.+++.+..+|...|..+.+- ...-.+||..+|++...|+.+...-+.|.++.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 37888999998888321111 12246789999999999999987666665543
No 91
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=77.77 E-value=2.7 Score=25.36 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
..++..+..+|...+ ..+ ...++|..+|++...|+.++.+-+.|.+
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 458999999998842 232 3567899999999999999876555543
No 92
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=77.71 E-value=3.3 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
....++..++++|.-.++ .+ ...+||..||+++..|+....+=+.|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345699999999988762 22 35778999999999999887754444
No 93
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=77.71 E-value=3.7 Score=26.50 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 43 ESAFTYEQLVALENKFKTT-RYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~~-~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
|..|+.++....-..+... .. ...+||..+||+...|..|.+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3468888876555555332 22 356889999999999999974
No 94
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=77.50 E-value=1.5 Score=28.27 Aligned_cols=47 Identities=21% Similarity=0.127 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
..++..+..+|.-.++ .+. ..+||..||++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4588999999987532 222 3568999999999999998866655443
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=77.42 E-value=3.2 Score=25.41 Aligned_cols=50 Identities=8% Similarity=0.007 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
.+++.+..+|...|..... ....-.+||..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788999999998852110 0012457899999999999999887666666
No 96
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=77.40 E-value=1.9 Score=26.64 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
+++.+..+|.-.+ ..+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 6777888887742 222 24578999999999999998765555443
No 97
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=75.05 E-value=3.6 Score=26.28 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 45 AFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
.++.++...|++.|.. +.+.+..+...+...+|++...|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4688899999999863 4578889988888888999888877664
No 98
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=74.91 E-value=4.7 Score=28.37 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHH-HHh--CCCchhhhhhhhcc
Q psy15100 40 LVPESAFTYEQLVALENKF-KTTRYLSVCERLNLA-LSL--SLTETQVKIWFQNR 90 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F-~~~~~p~~~~r~~La-~~l--gl~~~qV~~WFqNR 90 (165)
+++|..+|.+|...|-..+ +.++..+..+...+| .++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678899999999999998 677777776665543 256 78889999999763
No 99
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=74.80 E-value=5.3 Score=26.16 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 43 ESAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
...++.+++..|.+.|. .+.+.+..|...+...+| +++.+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35688999999999996 446899999999888887 67778888885
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=74.42 E-value=3.9 Score=27.76 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
.+++.+..+|...|.... ...++|..+|++...|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888887765442 35678999999999999999877766554
No 101
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=74.17 E-value=3.5 Score=26.26 Aligned_cols=50 Identities=6% Similarity=0.076 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 45 AFTYEQLVALENKFKTT--RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~--~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
.++..+..+|...|... .-. ...+||..+|++...|+.+...-+.|.|+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 37888899998888521 112 256789999999999999987666665543
No 102
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=73.76 E-value=2.3 Score=26.91 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..++.+++..|+..|. .+.+++..+...+...+|++...|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4578889999999985 34589999999999999999999998885
No 103
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=73.41 E-value=3.3 Score=28.56 Aligned_cols=46 Identities=17% Similarity=0.021 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
++..+..+|. .|. ......+||..||++...|+.+...-|.+.|+.
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5555556665 332 222456789999999999999998767666653
No 104
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=71.67 E-value=4.3 Score=28.59 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
.++..+..+|.-.| .......+||..||+++..|+.+...-|.+.|+...
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46777777775433 222346788999999999999999877777776544
No 105
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=69.66 E-value=5 Score=27.14 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
.++..+..+|.-.|.... ...++|..+|++...|+.+...-|.+.++
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 366777777777654332 35678999999999999999877766654
No 106
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=69.42 E-value=4.5 Score=25.97 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 45 AFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
.++.++...|++.|. .+.+.+..+...+...+|+++..|+.+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 367788899999885 34578999998888889999988887775
No 107
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=68.80 E-value=6 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 48 YEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 48 ~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
.++...+...+... + ...+||..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555555432 2 356789999999999999985
No 108
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=67.00 E-value=5.6 Score=28.40 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
++..+..+|.-.|-.. ....+||..+|++...|+.+...-|.+.|+..
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444455554444322 12467899999999999999987777776643
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=66.56 E-value=11 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHH-Hhc-CCCC-HHHHHHHHHHhCCCchhhhhhhh
Q psy15100 43 ESAFTYEQLVALENKF-KTT-RYLS-VCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F-~~~-~~p~-~~~r~~La~~lgl~~~qV~~WFq 88 (165)
+..|+.++....-..+ +.. .+.+ .....++|..+||+...|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888875444443 322 1222 13567899999999999999975
No 110
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=65.60 E-value=5.9 Score=29.11 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
++..+..+|...|... ....+||..||++...|+.+...-|.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5566666666655322 2356789999999999999998777776654
No 111
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=64.24 E-value=3.6 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.-...|....| . .....||+..|++...|-.+|.||-
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 45566677888888 5 7889999999999999999999863
No 112
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=63.73 E-value=8.3 Score=28.98 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 43 ESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
...++..++++|.-.++ .+ .-.+||..||+++..|+....|-+.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 34589999999977542 22 246789999999999999988766553
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=61.31 E-value=13 Score=25.08 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
..++.++...+...+... . ...+||..||++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457788877776666533 2 2567899999999999999974
No 114
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=60.78 E-value=21 Score=24.70 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCCCch--hhhhhh
Q psy15100 42 PESAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSLTET--QVKIWF 87 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl~~~--qV~~WF 87 (165)
+|..+|.+|+..|...|. .+.+.+..+...+...||+... .++..+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 346699999999999996 3568999999888888885543 344443
No 115
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=60.60 E-value=39 Score=23.42 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
..++.++...+...+... + ...+||..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 358888777666666533 2 2456799999999999999864
No 116
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=59.70 E-value=5.2 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 117
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=59.21 E-value=4.6 Score=29.06 Aligned_cols=41 Identities=7% Similarity=0.044 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|.+..|-. .....||++.|++...|-.+|.|+..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 555666688877643 34677899999999999999998643
No 118
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=58.84 E-value=5 Score=24.71 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCC
Confidence 468999999999999999987653
No 119
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=58.28 E-value=11 Score=28.71 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr 96 (165)
..++..+..+|.-.++ .+ .-.+||..||+++..|+....+-|.|-+.
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999999988642 22 35678999999999999998876666554
No 120
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=58.21 E-value=5.7 Score=23.11 Aligned_cols=24 Identities=8% Similarity=0.297 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999987543
No 121
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=57.34 E-value=12 Score=28.09 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 43 ESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
...++..++++|.-.+ ..+ .-.+||..||+++..|+...+|-+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VGK----TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 3458999999987643 222 356789999999999999988766553
No 122
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=57.23 E-value=5.8 Score=24.83 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||+.||++..-|..|..++..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 678999999999999999875433
No 123
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=56.90 E-value=6.1 Score=23.27 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 124
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=55.76 E-value=6.7 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998755
No 125
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=55.62 E-value=6 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
|.++|.-.++ .+. ..++|..+|+++..|+.+..+-+.|.+
T Consensus 3 e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 3 ERQVLKLIDE--GYT----NHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHHHHT--SCC----SHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 5566666332 222 357899999999999999886655544
No 126
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=54.60 E-value=24 Score=21.27 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhC--CCchh---hhhhhh
Q psy15100 44 SAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLS--LTETQ---VKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lg--l~~~q---V~~WFq 88 (165)
..++.+++..|+..|. .+.+.+..+...+...+| ++... |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3467788899999885 346899999998888887 45556 777774
No 127
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=54.38 E-value=23 Score=27.25 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
..++..++++|.-..+-. .-.+||..||+++..|+....|=+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 468899999997774322 2567899999999999999887666643
No 128
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=53.61 E-value=7.7 Score=23.25 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998753
No 129
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=53.49 E-value=7.5 Score=23.20 Aligned_cols=24 Identities=8% Similarity=0.297 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987553
No 130
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=52.60 E-value=7.9 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999877543
No 131
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=52.39 E-value=22 Score=21.34 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
..++.+++..|+..|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45889999999999963 45788888888888877 55667777774
No 132
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=52.39 E-value=29 Score=22.50 Aligned_cols=40 Identities=5% Similarity=-0.007 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
.++.++...+...+.. .+ + ..++|..+|++...|..|++.
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 4788777666666653 32 2 456899999999999999864
No 133
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=52.15 E-value=28 Score=22.91 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKT----TRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~----~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..++.+++..+...|.. +.+.+..+...+-..+|++...|...|.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45788999999999863 4578888888888888999888876653
No 134
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=51.96 E-value=8.9 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++.-.+.|.+..| . .....||++.|++...|-.+|.||
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCH
Confidence 4445566888888 5 678899999999999999999986
No 135
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=51.75 E-value=8.4 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999998754
No 136
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.15 E-value=0.13 Score=37.54 Aligned_cols=30 Identities=3% Similarity=-0.134 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCH
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSV 66 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~ 66 (165)
.+.++.|+.|+..|+++|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 566788999999999999999999998864
No 137
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=51.05 E-value=8.6 Score=23.58 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 357999999999999999987654
No 138
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=50.79 E-value=17 Score=21.94 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC-CCchhhhhhhh
Q psy15100 45 AFTYEQLVALENKFKT-----TRYLSVCERLNLALSLS-LTETQVKIWFQ 88 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lg-l~~~qV~~WFq 88 (165)
.++.++...|+..|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4788889999999853 45788888888877776 66667777774
No 139
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=50.61 E-value=11 Score=28.39 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=32.5
Q ss_pred CCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 45 AFTYEQ-LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 45 ~~s~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+.++ ++.-.+.|....|-. ....+||+++|++...|..+|.||-
T Consensus 28 ~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred hhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 344443 445555677666543 3466789999999999999999963
No 140
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=50.56 E-value=3.4 Score=29.35 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=21.5
Q ss_pred HHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 71 NLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 71 ~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
+||..+|++...|+.+...-|.+.|+.
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467788999999999998777776654
No 141
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=50.53 E-value=7.7 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..++.++...|++.|.. +.+.+..+...+...+|++...|..+|.
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677778888888853 4578888888887788898888887764
No 142
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=50.18 E-value=41 Score=23.84 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy15100 43 ESAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSL--TETQVKIWFQ 88 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl--~~~qV~~WFq 88 (165)
...++.+++..|...|.. +.+++..+...+...+|+ +...|...|.
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~ 100 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVA 100 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356888999999999964 468999998888888774 4445655554
No 143
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=49.75 E-value=30 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 43 ESAFTYEQLVALENKFKT------TRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~------~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
-..++.+++..|+..|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356899999999999853 56889999888888877 55666777764
No 144
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=49.58 E-value=8.7 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 45 AFTYEQ-LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 45 ~~s~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+.++ ++...+.|....|-. .....||..+|++...|..+|.||..
T Consensus 24 ~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 24 KMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHH
T ss_pred ccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 344443 455566677777532 23667899999999999999998643
No 145
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=49.54 E-value=21 Score=21.84 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 45 AFTYEQLVALENKFKT-----TRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
.++.+++..|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4888999999999853 45789999888888887 45667777774
No 146
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=49.53 E-value=9.2 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 467899999999999999987654
No 147
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=49.24 E-value=9.8 Score=22.48 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999998754
No 148
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=49.00 E-value=22 Score=23.45 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..++.++...|+..|.. +.+++..+...+....+++...|..+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788899999999963 4478888888877777888888877764
No 149
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=48.94 E-value=10 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998876
No 150
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=48.48 E-value=25 Score=21.27 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
++.....+|...=+.+-.....-++.|..+---++..|-.+..|.|+-||-..
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN 57 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLEN 57 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhh
Confidence 44456667766656667888888888886655678889999999999999754
No 151
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=48.41 E-value=22 Score=23.38 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
.+++.+..++.-.|-.+.. ....-.+||..+|++...|+.....-+.+.|+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3677788888887753311 112356789999999999999887666665553
No 152
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=48.32 E-value=27 Score=29.58 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy15100 43 ESAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSL--TETQVKIWFQ 88 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl--~~~qV~~WFq 88 (165)
+..|+.+|+..|++.|+ .+.+++..|...+...||+ ++.+|+..|+
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66899999999999995 4568999999888888874 4556666553
No 153
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=48.32 E-value=36 Score=22.65 Aligned_cols=44 Identities=5% Similarity=0.021 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--CCchhhhhhhhcchh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLS--LTETQVKIWFQNRRT 92 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg--l~~~qV~~WFqNRR~ 92 (165)
.++.++...+... ..++..+. .+|+.+|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4788887777666 44554454 45677778 788899999975443
No 154
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=47.92 E-value=39 Score=23.39 Aligned_cols=46 Identities=7% Similarity=-0.018 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHH------hCCCchhhhhhhhc
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLN-LALS------LSLTETQVKIWFQN 89 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~-La~~------lgl~~~qV~~WFqN 89 (165)
..++.++...|...+..++..+..+... |..+ ..++...|..|+..
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 4567777788888887777666665544 3222 24788889999863
No 155
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=47.17 E-value=24 Score=22.97 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCC-------Cchhhhhhhhc
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSL-------TETQVKIWFQN 89 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl-------~~~qV~~WFqN 89 (165)
.++.++...|......++..+..+......+.|+ +...|..|++.
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 4666677777777776666666555443323274 77888888753
No 156
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=47.10 E-value=9.8 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-.. ....||++.|++...|..+|.||-
T Consensus 41 l~aA~~lf~~~G~~~~-t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 41 LGTATRIFYAEGIHSV-GIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp HHHHHHHHHHHCSTTS-CHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4444555777776543 366789999999999999999863
No 157
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=47.07 E-value=10 Score=22.68 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 158
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=47.03 E-value=22 Score=26.72 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
..+++.++++|.-..+ .+ .-.+||..||+++..|+.-..|=+.|
T Consensus 174 ~~Lt~re~~vl~~~~~--G~----s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 174 VRLTARETEMLKWTAV--GK----TYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp CCCCHHHHHHHHHHHT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3467777777765432 11 24678999999999999888765554
No 159
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=46.09 E-value=59 Score=22.09 Aligned_cols=41 Identities=5% Similarity=-0.041 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
..++.++...+...+.. .+ ...+||..+|++...|..|++.
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 35888877766666653 32 2456899999999999999863
No 160
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=46.03 E-value=34 Score=20.87 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999998765
No 161
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=45.69 E-value=16 Score=21.41 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy15100 46 FTYEQLVALENKFK-----TTRYLSVCERLNLALSLSL--TETQVKIWFQ 88 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl--~~~qV~~WFq 88 (165)
++.+++..|+..|. .+.+.+..+...+...+|+ +...|..+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 46778888888885 3457888888888777774 4556666664
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=45.61 E-value=12 Score=22.67 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999998764
No 163
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=45.32 E-value=14 Score=22.78 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999987543
No 164
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=45.02 E-value=9.7 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCchhhhhhh
Q psy15100 69 RLNLALSLSLTETQVKIWF 87 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WF 87 (165)
..+||..||++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 165
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=44.96 E-value=14 Score=26.15 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
-++...+.|.+..|-.. ...+||+..|++...|-.+|.|+
T Consensus 19 Il~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 19 IIERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCH
Confidence 35556667888887543 36778999999999999999986
No 166
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=44.72 E-value=15 Score=25.89 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-. .....||++.|++...|-..|.|+-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 455566687777643 3367789999999999999999863
No 167
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=44.67 E-value=14 Score=27.07 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
..+|..+.++|+-..+. . ...+||..++++++.|++...|=|.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g---~---s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG---L---TNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC---C---CHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 35899998888776543 2 357789999999999999988766553
No 168
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=44.51 E-value=22 Score=26.49 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=32.9
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 44 SAFTYEQ-LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 44 ~~~s~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
...+.++ ++.-...|....|-. .....||+++|++...|-..|.||-
T Consensus 14 ~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 14 EPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHH
Confidence 3344443 455566677777643 3366789999999999999999864
No 169
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=44.44 E-value=12 Score=23.56 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 170
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=44.22 E-value=7.8 Score=27.13 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
...+|..+|+...+++.|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56789999999999999997655
No 171
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=44.08 E-value=13 Score=22.39 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCchhhhhhhhc
Q psy15100 69 RLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqN 89 (165)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999764
No 172
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=43.75 E-value=33 Score=23.57 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCchhhh-hh
Q psy15100 43 ESAFTYEQLVALENKFKTT----RYLSVCERLNLALSLSLTETQVK-IW 86 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~~----~~p~~~~r~~La~~lgl~~~qV~-~W 86 (165)
...++.+++..+++.|..- .+.+..+...+-...+|+...+. ||
T Consensus 24 ~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 24 TWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 4668999999999999743 46778888777778898887765 55
No 173
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.66 E-value=13 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 174
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.34 E-value=8.9 Score=27.48 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|.... .......||+..|++...|..+|.||.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 445555677776 556688899999999999999999863
No 175
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=43.09 E-value=11 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.324 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||+..|++...|-.+|.+|-
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 455666688877643 3367789999999999999999874
No 176
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=42.98 E-value=8.8 Score=28.04 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-...|....|-. .....||+..|++...|..+|.||.
T Consensus 41 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe 80 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDID 80 (237)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHH
T ss_pred HHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHH
Confidence 445555677777633 2366789999999999999999863
No 177
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=42.90 E-value=14 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35789999999999999998764
No 178
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=41.70 E-value=12 Score=26.03 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.-.+.|....|- .....||++.|++...|...|.||.
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~ 53 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKD 53 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 355666678888877 6688899999999999999999873
No 179
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.67 E-value=21 Score=25.31 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCCCc--hhhhhhh
Q psy15100 43 ESAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSLTE--TQVKIWF 87 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl~~--~qV~~WF 87 (165)
++.||.+|+..|+..|. .+.+.+..|...+...+|+.. ..|...|
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 53 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLM 53 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHH
Confidence 35689999999999996 345899999988888887544 3444444
No 180
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=41.67 E-value=8.9 Score=27.05 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++...+.|....| . .....||++.|++...|-..|.||
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCH
Confidence 4555666888888 5 578899999999999999999986
No 181
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=41.14 E-value=17 Score=21.89 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..++.+.+..+..... .+ ..+||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~g----lt---q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS----LT---QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT----CC---HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC----CC---HHHHHHHhCcCHHHHHHHHcCCC
Confidence 3578888887765432 22 46789999999999999987754
No 182
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=41.06 E-value=57 Score=21.58 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 42 PESAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
....++.+++..|+..|.. +.+.+..+...+...+| ++...|+..|.
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 66 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLID 66 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3566999999999999963 45788898888877776 45555666553
No 183
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=41.01 E-value=82 Score=21.32 Aligned_cols=47 Identities=6% Similarity=0.002 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHh----C--CCchhhhhhhhcc
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLN-LALSL----S--LTETQVKIWFQNR 90 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~-La~~l----g--l~~~qV~~WFqNR 90 (165)
..++.++...|...+..++..+..+... |..+. | ++...|..|+...
T Consensus 89 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 89 KVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp SSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 4578888888888888777666655433 22221 5 7888999998654
No 184
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=40.81 E-value=7.5 Score=28.44 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++...+.|....|-.. ...+||++.|++...|..+|.||
T Consensus 49 l~aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 49 LDACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCH
Confidence 4445556777776443 36678999999999999999986
No 185
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=40.77 E-value=7.8 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|... .......||+..|++...|-.+|.||-
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33444556555 556678899999999999999999863
No 186
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=40.63 E-value=15 Score=23.51 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998864
No 187
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=40.18 E-value=19 Score=25.31 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++...+.|....|-... ...||++.|++...|-..|.|+.
T Consensus 21 Il~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 21 LLQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp HHHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHH
Confidence 355566668887764433 66789999999999999999863
No 188
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=39.89 E-value=16 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 189
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=39.84 E-value=44 Score=22.52 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy15100 40 LVPESAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSL--TETQVKIWF 87 (165)
Q Consensus 40 ~~~R~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl--~~~qV~~WF 87 (165)
.+.+..++.+++..|+..|.. +.+.+..+...+...+|+ +...|...|
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345677999999999999963 457888888888888775 444555554
No 190
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=39.10 E-value=25 Score=23.74 Aligned_cols=22 Identities=0% Similarity=-0.164 Sum_probs=18.0
Q ss_pred HHHHHHhCCCchhhhhhhhcch
Q psy15100 70 LNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 70 ~~La~~lgl~~~qV~~WFqNRR 91 (165)
.+||..+|++...|..|-.+++
T Consensus 88 ~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 88 KEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHCCCHHHHHHHHCCCC
Confidence 3578888999999999987754
No 191
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=38.98 E-value=15 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-.. ....||+..|++...|-.+|.|+-
T Consensus 23 l~aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 23 MEIALEVFARRGIGRG-GHADIAEIAQVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHSCCSSC-CHHHHHHHHTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHhcCcccc-cHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4455556888776543 366789999999999999999863
No 192
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=38.94 E-value=17 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCchhhhhhhhc
Q psy15100 69 RLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqN 89 (165)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999987
No 193
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=38.64 E-value=17 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999998765
No 194
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=38.49 E-value=27 Score=25.00 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
..+|..+.++|+-..+.. ...+||..++++++.|+....|=|.|-
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 458999999998765532 367899999999999999888766664
No 195
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=38.25 E-value=68 Score=19.57 Aligned_cols=59 Identities=20% Similarity=0.066 Sum_probs=38.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhh
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTR--YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~--~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~ 97 (165)
.++.|.+.|.+.-..+....+.-. .-.+..+.++-..-||+..+|+.=.|.-|.+.+|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 356778888776554444443333 23345555555556899999999998877776653
No 196
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=38.21 E-value=18 Score=21.99 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999987753
No 197
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=38.20 E-value=23 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCchhhhhhhhc
Q psy15100 67 CERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 67 ~~r~~La~~lgl~~~qV~~WFqN 89 (165)
....+||..+||+++.+...|+.
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34677899999999988888864
No 198
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=38.16 E-value=16 Score=27.09 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||+.+|++...|..|..+++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 199
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=37.98 E-value=53 Score=21.36 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy15100 46 FTYEQLVALENKFK-----TTRYLSVCERLNLALSLSL--TETQVKIWFQ 88 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl--~~~qV~~WFq 88 (165)
++.+++..|+..|. .+.+.+..+...+...+|+ +...|..+|.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 67888899999885 3457888888877777764 4556666664
No 200
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=37.92 E-value=70 Score=21.19 Aligned_cols=46 Identities=9% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhC--CCchhhhhhhhc
Q psy15100 44 SAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLS--LTETQVKIWFQN 89 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lg--l~~~qV~~WFqN 89 (165)
..++.+++..|+..|. .+.+.+..+...+...+| ++...|..+|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 4588999999999985 345899999988887776 455667777753
No 201
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=37.83 E-value=18 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999988654
No 202
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=37.42 E-value=62 Score=21.75 Aligned_cols=45 Identities=4% Similarity=0.127 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC---Cchhhhhhhhc
Q psy15100 45 AFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSL---TETQVKIWFQN 89 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl---~~~qV~~WFqN 89 (165)
.++.+++..|...|. .+.+.+..+...+...+|+ +...|..+|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578899999999986 3457899998888888866 55667777753
No 203
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=37.39 E-value=7 Score=28.66 Aligned_cols=43 Identities=7% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
++..+..+|.-.|. ......+||..||++...|+.++..-+.+
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 55555556555442 33456789999999999999988754443
No 204
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=37.35 E-value=19 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCchhhhhhhhcc
Q psy15100 69 RLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNR 90 (165)
..++|..+|++...|..|..++
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999998654
No 205
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.31 E-value=27 Score=24.73 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 49 EQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 49 ~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
.-++.-...|.+..|-.. ....||+..|++...|-.+|.||.
T Consensus 15 ~Il~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe 56 (202)
T 2i10_A 15 VALQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKR 56 (202)
T ss_dssp HHHHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHH
Confidence 345556667888887543 367789999999999999998864
No 206
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.84 E-value=74 Score=19.63 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..+|.++...|++....-+--+...=+.||..+|=+..+|+.=|+
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~ 53 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAK 53 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 459999999999998755532222224578888877888875443
No 207
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=36.78 E-value=52 Score=21.80 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 42 PESAFTYEQLVALENKFK-----TTRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
++..++.+++..|...|. .+.+.+..+...+...+| ++..+|...|.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356799999999999996 345889888888777766 45556666664
No 208
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=36.56 E-value=12 Score=26.27 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
++...+.|....|-.. ....||+..|++...|-.+|.|+-.=
T Consensus 18 l~aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 18 LSASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHHH
Confidence 4455556777777443 36778999999999999999986443
No 209
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=36.41 E-value=37 Score=20.62 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 47 TYEQLVALENKFK-----TTRYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 47 s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
...+...|...|. .+.+.+..+...+...+| ++..+|..+|.
T Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456667777774 234788888888877777 56666776664
No 210
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=36.30 E-value=25 Score=26.34 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=33.1
Q ss_pred CCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 46 FTYEQ-LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 46 ~s~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
.+.++ ++.-.+.|....|-. .....||+++|++...|-..|.||-.
T Consensus 19 ~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 19 LSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHH
T ss_pred cCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 44443 455566677777643 33667899999999999999998643
No 211
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=35.98 E-value=42 Score=24.16 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.....|....|-.. ....||+..|++...|-.+|.++-
T Consensus 35 Il~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHH
Confidence 36666777888777543 366789999999999999998863
No 212
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=35.75 E-value=33 Score=23.83 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHhCCC--chhhhhh
Q psy15100 45 AFTYEQLVALENKFKT-------TRYLSVCERLNLALSLSLT--ETQVKIW 86 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~-------~~~p~~~~r~~La~~lgl~--~~qV~~W 86 (165)
.+|.+|+..|+..|.. +.+.+..+...+.+.||+. +.+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4789999999998852 3478888888888888864 4445443
No 213
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=35.75 E-value=17 Score=22.70 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCchhhhhhhh
Q psy15100 69 RLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFq 88 (165)
+.++|+.+|++...|+.|-+
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 214
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=35.68 E-value=17 Score=25.95 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++.-.+.|.+..|-.. ....||+..|++...|-.+|.||..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2wui_A 17 LDAAERVFLEKGVGTT-AMADLADAAGVSRGAVYGHYKNKIE 57 (210)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4444556888877543 3667899999999999999998743
No 215
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=35.61 E-value=12 Score=26.66 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-...|....|-.. ....||++.|++...|-.+|.|+-
T Consensus 16 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~t~Y~~F~sKe 55 (210)
T 3vib_A 16 MLAALETFYRKGIART-SLNEIAQAAGVTRDALYWHFKNKE 55 (210)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHHCcCHHHHHHHCCCHH
Confidence 4444566888887543 366789999999999999999874
No 216
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=34.91 E-value=14 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-...|....|- .....||+..|++...|..+|.||.
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~ 56 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKE 56 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHH
Confidence 44455567777776 5678899999999999999999863
No 217
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=34.78 E-value=12 Score=26.14 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. ....+||++.|++...|-.+|.||-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHH
Confidence 444555677777643 3467789999999999999999873
No 218
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=34.76 E-value=86 Score=21.37 Aligned_cols=41 Identities=7% Similarity=0.021 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchh
Q psy15100 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQ 82 (165)
Q Consensus 42 ~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~q 82 (165)
++..++.+++..|...+.....+.......|+..+||...+
T Consensus 3 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E 43 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSE 43 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHH
T ss_pred ccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHH
Confidence 45679999999998888766555555566677777765544
No 219
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.62 E-value=12 Score=27.41 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-. .....||++.|++...|..+|.||.
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 445555677777633 2366789999999999999999873
No 220
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=34.55 E-value=22 Score=22.74 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45699999999999999987654
No 221
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=34.50 E-value=20 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.-.+.|....|-. .....||++.|++...|-.+|.||-
T Consensus 16 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe 56 (219)
T 2w53_A 16 ILDAAEACFHEHGVAR-TTLEMIGARAGYTRGAVYWHFKNKS 56 (219)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHhhcCCCHH
Confidence 4566667788888754 3367789999999999999999863
No 222
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=34.25 E-value=16 Score=25.34 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-.. ....||++.|++...|-.+|.||-.
T Consensus 16 l~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCHHH
Confidence 5566666887776443 3667899999999999999998743
No 223
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=34.12 E-value=12 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.-.+.|.+..|-. .....||++.|++...|..+|.||.
T Consensus 17 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 17 LLARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHH
T ss_pred HHHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHH
Confidence 3455556677777543 2356789999999999999999863
No 224
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=34.12 E-value=17 Score=26.18 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-...|....|-.. ....||...|++...|..+|.||-
T Consensus 20 l~AA~~lf~~~G~~~~-s~~~IA~~AGvs~~tlY~~F~sKe 59 (208)
T 3v6g_A 20 VEAAERVIARQGLGGL-SHRRVAAEANVPVGSTTYYFNDLD 59 (208)
T ss_dssp HHHHHHHHHHHCTTCC-CHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchhHHHHcCCHH
Confidence 4555566888877443 356789999999999999999863
No 225
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=33.86 E-value=6 Score=29.38 Aligned_cols=40 Identities=5% Similarity=0.071 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-. ....+||++.|++...|-.+|.|+-
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe 91 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDRE 91 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHH
Confidence 445556677777643 3366789999999999999999863
No 226
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=33.82 E-value=24 Score=20.58 Aligned_cols=23 Identities=9% Similarity=-0.020 Sum_probs=19.3
Q ss_pred HHHHHHHhC--CCchhhhhhhhcch
Q psy15100 69 RLNLALSLS--LTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lg--l~~~qV~~WFqNRR 91 (165)
..+||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 457899999 99999999987654
No 227
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=33.48 E-value=13 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 57 KFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 57 ~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
.|.+..|- ......||++.|++...|-.+|.|+-
T Consensus 37 lf~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 37 LESSDGSQ-RITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred HHhcCChh-hcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 44544443 34467889999999999999999873
No 228
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=33.36 E-value=25 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||+.+|++...|-.++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 229
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.93 E-value=19 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++.-.+.|.... ......||+++|++...|-..|.||-.
T Consensus 17 l~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~ 55 (213)
T 2g7g_A 17 AEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAA 55 (213)
T ss_dssp HHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHH
Confidence 445555677666 455778999999999999999998643
No 230
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=32.77 E-value=24 Score=24.40 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 49 EQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 49 ~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
.-++.....|....|-. .....||+..|++...+-..|.|+-
T Consensus 15 ~il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~ 56 (196)
T 3he0_A 15 QILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKE 56 (196)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHH
Confidence 34566667788887644 3467789999999999999999863
No 231
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=32.67 E-value=20 Score=25.35 Aligned_cols=40 Identities=10% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-.. ....||+..|++...|-..|.||.
T Consensus 17 l~aA~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKT-TMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp HHHHHHHHHHHCSSSC-CHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCCCcC-CHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4555666888887433 356789999999999999999863
No 232
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=32.52 E-value=13 Score=25.94 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||++.|++...|-.+|.||-
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 455556677777532 2356789999999999999999863
No 233
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=32.29 E-value=14 Score=27.32 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-. .....||++.|++...|..+|.||.
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 445555677766533 2366789999999999999999863
No 234
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.94 E-value=14 Score=26.33 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-. .....||+..|++...|-.+|.||-
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 455556688777643 2366789999999999999999863
No 235
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=31.82 E-value=28 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-.. ....||+..|++...|-.+|.||-
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2xdn_A 17 IEAAERAFYKRGVART-TLADIAELAGVTRGAIYWHFNNKA 56 (210)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCTTHHHHHCSSHH
T ss_pred HHHHHHHHHHcCcccC-cHHHHHHHHCCChHHHHHHhCCHH
Confidence 4445566888876543 367789999999999999999863
No 236
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=31.70 E-value=31 Score=23.61 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.....|....|-. .....||++.|++...+-.+|.|+.
T Consensus 14 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 14 ILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp HHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHH
Confidence 3555666688777644 3367789999999999999999874
No 237
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=31.51 E-value=25 Score=22.92 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|-.+++.
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~~ 48 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGETK 48 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457899999999999999987643
No 238
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=31.42 E-value=17 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-. .....||++.|++...|-.+|.||-
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 455566688877643 3366789999999999999999863
No 239
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=31.39 E-value=35 Score=23.99 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-.. ....||+..|++...|-.+|.||-
T Consensus 23 l~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 23 ILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred HHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4445556777777543 366789999999999999999863
No 240
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=31.34 E-value=24 Score=24.63 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++.....|.+..|-. .....||++.|++...|-.+|.++-.
T Consensus 13 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEHGYDN-VTVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 555566677777643 23667899999999999999998643
No 241
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=31.19 E-value=27 Score=23.46 Aligned_cols=42 Identities=12% Similarity=-0.021 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 47 TYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 47 s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
+.+|...++.....-.- ......+|+..+++.+..+..|++-
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 45565555555433321 2224557999999999999999853
No 242
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=30.74 E-value=17 Score=25.41 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++...+.|.+..|-. .....||++.|++...|-.+|.|+.
T Consensus 14 Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 14 ILAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHH
Confidence 3555666677777632 3366789999999999999999863
No 243
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=30.65 E-value=7.8 Score=21.99 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 47 TYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 47 s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
+.+--..|..+....+-.+.+...+.|.+|||...-|..+|..
T Consensus 5 seeverklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 5 SEEVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3444455555555555566677778899999999999998854
No 244
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.60 E-value=62 Score=22.39 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 46 FTYEQLVALENKFKT----TRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~----~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++..++.+|-..+.. +.+|+.. +||..+|++...|....++=
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L 75 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMF 75 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 667777777777653 4567754 68999999999999888763
No 245
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=30.54 E-value=30 Score=23.83 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
-++...+.|....|-.. ....||++.|++...|-..|.||
T Consensus 7 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 7 ILGVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCH
Confidence 35556667777776443 36678999999999999999986
No 246
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=30.37 E-value=99 Score=19.91 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q psy15100 46 FTYEQLVALENKFKT-----TRYLSVCERLNLALSLSL--TETQVKIWFQ 88 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl--~~~qV~~WFq 88 (165)
|+.+|+..|+..|.. +.+.+..+...+...+|+ +...|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMS 50 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 578899999999963 458899998888777775 4445555554
No 247
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=30.31 E-value=12 Score=26.14 Aligned_cols=40 Identities=8% Similarity=0.029 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|....|-. .....||++.|++...|-.+|.||-
T Consensus 23 l~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRA 62 (208)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344445577766533 2356789999999999999999863
No 248
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=30.22 E-value=11 Score=27.44 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|- ......||++.|++...|-.+|.||-
T Consensus 19 l~AA~~l~~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 19 IGVALDLFSRRSPD-EVSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCch-hcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 44555667777763 23467789999999999999999863
No 249
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=30.21 E-value=30 Score=23.96 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.-.+.|.+..|-. .....||++.|++...|-.+|.||-
T Consensus 12 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 12 IIDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHH
Confidence 4556667788887744 3367789999999999999999863
No 250
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=30.17 E-value=30 Score=23.97 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-.. ....||+..|++...|-.+|.||..
T Consensus 9 l~aA~~lf~~~G~~~~-s~~~IA~~agvsk~t~Y~~F~sK~~ 49 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEAT-SVQDLAQALGLSKAALYHHFGSKEE 49 (190)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4555666887776543 2567899999999999999998754
No 251
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.11 E-value=17 Score=26.48 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++.-...|....|-. .....||++.|++...|-..|.||
T Consensus 22 l~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K 60 (216)
T 2oi8_A 22 KDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGR 60 (216)
T ss_dssp HHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCH
Confidence 444555677777643 336678999999999999999986
No 252
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=30.08 E-value=27 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998764
No 253
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=29.94 E-value=27 Score=24.40 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-. ....+||++.|++...+-..|.|+.
T Consensus 19 l~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~ 58 (195)
T 2iu5_A 19 AKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQE 58 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHhCCCCe-eCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 555666688877643 3367789999999999999999874
No 254
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=29.86 E-value=34 Score=24.17 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||+..|++...|-.+|.|+-
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~ 75 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKA 75 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHH
Confidence 555666688877643 3367789999999999999999863
No 255
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=29.82 E-value=87 Score=18.72 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCC---Cchhhhh
Q psy15100 37 SEDLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSL---TETQVKI 85 (165)
Q Consensus 37 ~~~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl---~~~qV~~ 85 (165)
++.+++|..+|.++-..|....+....-... .||..+++ +..|++.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~---~Ia~~~~~~~Rt~~qcr~ 52 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWS---KILLHYKFNNRTSVMLKD 52 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHH---HHHHHSCCSSCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHH---HHHHHcCcCCCCHHHHHH
Confidence 3456677889999999998887765533444 34555553 4455554
No 256
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=29.79 E-value=29 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999987764
No 257
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=29.79 E-value=26 Score=24.14 Aligned_cols=40 Identities=10% Similarity=0.216 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-.. ....||++.|++...|-.+|.||-
T Consensus 13 l~aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCHH
Confidence 4455566777776443 366789999999999999999863
No 258
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=29.63 E-value=19 Score=25.11 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++...+.|.+..|-. .....||+..|++...|-.+|.||-
T Consensus 21 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 21 IRAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHH
Confidence 3555566687777653 3367789999999999999999873
No 259
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.45 E-value=29 Score=22.85 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45689999999999999998764
No 260
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=29.43 E-value=31 Score=21.39 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 35689999999999999987764
No 261
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=29.41 E-value=29 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhcchh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
..+||..+|++...|..|-.+++.
T Consensus 52 q~elA~~~gis~~~is~~E~G~~~ 75 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTAT 75 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 456999999999999999987653
No 262
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=29.25 E-value=34 Score=23.81 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
-++.....|.+..|-. .....||++.|++...|..+|.|+
T Consensus 9 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK 48 (185)
T 2yve_A 9 ILRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSR 48 (185)
T ss_dssp HHHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCH
Confidence 3555566677777643 346778999999999999999986
No 263
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=29.14 E-value=36 Score=23.81 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++.-...|.+..|-.. ....||+..|++...|-..|.||
T Consensus 18 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~sK 56 (197)
T 2hyt_A 18 LATARKVFSERGYADT-SMDDLTAQASLTRGALYHHFGDK 56 (197)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCTTHHHHHHSSH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCH
Confidence 4555566888887543 36678999999999999999986
No 264
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=28.60 E-value=89 Score=20.51 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy15100 45 AFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSL--TETQVKIWF 87 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl--~~~qV~~WF 87 (165)
.++.+++..|...|. .+.+.+..+...+...+|+ +...|+.+|
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 52 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 52 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 478888888988885 3446788888777777764 444565555
No 265
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=28.54 E-value=79 Score=21.75 Aligned_cols=43 Identities=9% Similarity=-0.046 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
....+..|......+......++.++||....+..++.+...+
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~ 127 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVT 127 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHH
Confidence 3445666777777788889999999999999888777654433
No 266
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=28.38 E-value=10 Score=27.51 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|- ......||++.|++...|-.+|.|+-
T Consensus 36 l~aA~~lf~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~sK~ 75 (226)
T 2pz9_A 36 VAAAKEEFARHGIA-GARVDRIAKQARTSKERVYAYFRSKE 75 (226)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCcc-cCcHHHHHHHHCCChHHHHHHcCCHH
Confidence 45555566666542 22366789999999999999999863
No 267
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=28.17 E-value=27 Score=22.48 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHH-----hcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 52 VALENKFK-----TTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 52 ~~Le~~F~-----~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..|+..|. .+.+.+..+...+...+|++...|..+|.
T Consensus 11 ~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~ 52 (99)
T 1qjt_A 11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWD 52 (99)
T ss_dssp THHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555553 34578888888877888888888877764
No 268
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=28.15 E-value=29 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCchhhhhhhhc
Q psy15100 68 ERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 68 ~r~~La~~lgl~~~qV~~WFqN 89 (165)
...++|+.||++...|-.|...
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 3567899999999999999854
No 269
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=27.64 E-value=32 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 46789999999999999998754
No 270
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.46 E-value=35 Score=24.10 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-.. ....||++.|++...|-.+|.||-
T Consensus 14 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tiY~~F~sKe 53 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGA-RIDRIAAEARANKQLIYAYYGNKG 53 (202)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHcCCHH
Confidence 5555666887776443 366789999999999999999863
No 271
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=27.42 E-value=34 Score=20.73 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||+.+|++...|-.|+.|+.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56789999999999999998763
No 272
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=27.39 E-value=65 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhh
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQV 83 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV 83 (165)
-+.+|...=+...|.+.+....+|..|+|+..+|
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 4555555555568999999999999999999887
No 273
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=27.27 E-value=42 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|....|-. .....||++.|++...|...|.||-
T Consensus 13 l~aA~~l~~~~G~~~-~s~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 13 LGAATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCccHHHHHCCCHH
Confidence 445556677777744 3467789999999999999999863
No 274
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=27.26 E-value=48 Score=23.51 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 68 ERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 68 ~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
...+||+.+|++...|..|..+++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~ 46 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAI 46 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCC
Confidence 4667899999998889999876654
No 275
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.25 E-value=41 Score=22.84 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||++.|++...+-..|.|+-
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHH
Confidence 455556677777643 3467789999999999999999863
No 276
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=27.22 E-value=34 Score=23.73 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||++.|++...|-.+|.|+-
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKE 57 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHH
Confidence 445555677777643 3466789999999999999999863
No 277
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=27.12 E-value=58 Score=23.45 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
.+|..+.++|+...+. ....+||..++++++.|+....+=|.|
T Consensus 159 ~Lt~rE~~vL~~l~~g------~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 159 KLTKREQQIIKLLGSG------ASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp TSCHHHHHHHHHHTTT------CCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4888888888776432 235678999999999999888765555
No 278
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.06 E-value=38 Score=23.09 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhc-c
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN-R 90 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqN-R 90 (165)
-++...+.|....|-.. ....||++.|++...|-..|.| +
T Consensus 11 Il~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~~sK 51 (191)
T 1sgm_A 11 ILHTASRLSQLQGYHAT-GLNQIVKESGAPKGSLYHFFPNGK 51 (191)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHCCCSCHHHHSTTTCH
T ss_pred HHHHHHHHHHHcCcccc-CHHHHHHHHCCCchhHHHHccccH
Confidence 35555666777776433 3567899999999999999997 6
No 279
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=27.02 E-value=34 Score=21.83 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCchhhhhhhhc
Q psy15100 69 RLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqN 89 (165)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999987
No 280
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=26.99 E-value=69 Score=20.97 Aligned_cols=33 Identities=33% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhCCCchhhh-hhhhcchhhhhh
Q psy15100 64 LSVCERLNLALSLSLTETQVK-IWFQNRRTKWKK 96 (165)
Q Consensus 64 p~~~~r~~La~~lgl~~~qV~-~WFqNRR~k~kr 96 (165)
....+-.+|....+|++.|+. +|-..||.|-|-
T Consensus 43 lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKv 76 (91)
T 2kz5_A 43 LPVDDFNELLARYPLTESQLALVRDIRRRGKNKV 76 (91)
T ss_dssp SCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHH
Confidence 455667778888999999976 677777776553
No 281
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=26.96 E-value=35 Score=23.85 Aligned_cols=40 Identities=5% Similarity=0.066 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. ....+||+..|++...|...|.|+-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 20 LDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHH
Confidence 445555677777643 3366789999999999999999874
No 282
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=26.91 E-value=38 Score=23.76 Aligned_cols=40 Identities=8% Similarity=0.166 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-.. ....||++.|++...+-.+|.|+-
T Consensus 15 l~aA~~lf~~~G~~~~-t~~~Ia~~Agvs~gt~Y~yF~sKe 54 (204)
T 3anp_C 15 FRAAMELFRNRGFQET-TATEIAKAAHVSRGTFFNYYPYKE 54 (204)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSTH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCchHHHHHHcCCHH
Confidence 4455566888777543 367789999999999999999863
No 283
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=26.67 E-value=36 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-. .....||++.|++...|-.+|.||.
T Consensus 24 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 24 LSAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHH
Confidence 445555577777643 3467789999999999999999863
No 284
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=26.62 E-value=37 Score=20.12 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=24.0
Q ss_pred HHHHHHHH-----hcCCCCHHHHHHHHHHhC----CCchhhhh
Q psy15100 52 VALENKFK-----TTRYLSVCERLNLALSLS----LTETQVKI 85 (165)
Q Consensus 52 ~~Le~~F~-----~~~~p~~~~r~~La~~lg----l~~~qV~~ 85 (165)
..|+..|. .+.+.+..+...+...+| ++..+|..
T Consensus 7 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 49 (83)
T 1yx7_A 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKE 49 (83)
T ss_dssp THHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHH
Confidence 34555553 345899999888887777 67777777
No 285
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=26.59 E-value=34 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987754
No 286
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=26.51 E-value=33 Score=23.79 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++...+.|....|-. .....||+..|++...|-.+|.|+
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 17 ANKIWDIFIANGYEN-TTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCchhHHHHcCCH
Confidence 455556677777653 336678999999999999999986
No 287
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.45 E-value=62 Score=22.75 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
++..+.++|+-..+. + ...+||..++++++.|++...|=|.|.
T Consensus 143 Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 143 LTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp SCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 566666666654321 1 245688999999999998877666554
No 288
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=26.36 E-value=35 Score=22.67 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999998764
No 289
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=26.24 E-value=31 Score=24.29 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-.. ....||+..|++...|-.+|.||-
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK~ 56 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETRE 56 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4444556777776543 366789999999999999999864
No 290
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=25.91 E-value=32 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhCC
Q psy15100 52 VALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99 (165)
Q Consensus 52 ~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~~ 99 (165)
.++.-.|+.|+||..+- - +.=-.|||.+||.+++
T Consensus 16 RiIkiLyQSNPyP~peG-----------T---RqaRRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEG-----------T---RQARRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCC-----------C---TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCC-----------c---hhhhHhHHHHHHHHHH
Confidence 44555689999988541 1 1112688999987654
No 291
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=25.84 E-value=36 Score=22.19 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999998765
No 292
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=25.69 E-value=38 Score=23.63 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-. .....||++.|++...|..+|.++-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 20 LDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHH
Confidence 445556677777643 3366789999999999999999863
No 293
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=25.65 E-value=61 Score=20.94 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCchhhhhhhhc
Q psy15100 67 CERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 67 ~~r~~La~~lgl~~~qV~~WFqN 89 (165)
....+||..+||+++.+...|+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 45778899999999988877764
No 294
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=25.64 E-value=49 Score=23.79 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 43 ESAFTYEQLVALENKFKTTRYLS----VCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 43 R~~~s~~Ql~~Le~~F~~~~~p~----~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
+..|+.++.......-...-.|. .....+||..||++...+..|-..
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 34588888776543322111111 124678999999999999999764
No 295
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=25.59 E-value=19 Score=24.84 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++...+.|....|-. .....||++.|++...|-..|.|+-
T Consensus 15 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (196)
T 3col_A 15 IQDAVAAIILAEGPAG-VSTTKVAKRVGIAQSNVYLYFKNKQ 55 (196)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHhCCHH
Confidence 3455556677776532 2356789999999999999999863
No 296
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=25.56 E-value=41 Score=25.41 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-. .....||++.|++...|-.+|.||-
T Consensus 47 l~AA~~lf~e~G~~~-~S~~~IA~~AGVs~~tlY~hF~sKe 86 (273)
T 3c07_A 47 LETAMRLFQERGYDR-TTMRAIAQEAGVSVGNAYYYFAGKE 86 (273)
T ss_dssp HHHHHHHHHHTCSTT-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhCCccc-cCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 455556688877643 3367789999999999999998863
No 297
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=25.47 E-value=31 Score=24.14 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++...+.|....|-. .....||++.|++...|-.+|.||
T Consensus 14 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK 52 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDR 52 (199)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCH
Confidence 445555677776643 236678999999999999999986
No 298
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=25.47 E-value=45 Score=23.36 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.....|....|-.. ....||+..|++...+-.+|.|+-
T Consensus 15 Il~aA~~lf~~~G~~~~-s~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 15 ILQAAIEVISEKGLDKA-SISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCCchHHHHhCCCHH
Confidence 35556666888877543 366789999999999999999874
No 299
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=25.39 E-value=1e+02 Score=20.03 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 44 SAFTYEQ-LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..++.+. +.+++..+.-. ....++|...+|+..+|..|-.
T Consensus 31 rrWs~~~Kl~VV~~~~~g~-----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 31 RRWVASRKAAVVKAVIHGL-----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCCHHHHHHHHHHHHTTS-----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHcCC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 3466666 44554444322 1356789999999999999963
No 300
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=25.28 E-value=94 Score=20.00 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKT-----TRYLSVCERLNLALSLSL--TETQVKIWF 87 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl--~~~qV~~WF 87 (165)
..++.+++..|...|.. +.+.+..+...+...+|+ +...+...|
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 53 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLM 53 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34788999999999853 446788888777777764 444455554
No 301
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=25.20 E-value=17 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-. .....||++.|++...|...|.||-.
T Consensus 45 l~AA~~lf~e~G~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~ 85 (214)
T 2guh_A 45 VDAAGRAFATRPYRE-ITLKDIAEDAGVSAPLIIKYFGSKEQ 85 (214)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcChhh-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444556677777643 23567899999999999999998643
No 302
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.98 E-value=58 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCchhhhhhhhc
Q psy15100 68 ERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 68 ~r~~La~~lgl~~~qV~~WFqN 89 (165)
...+||..+||+...+...|+.
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 4677899999999888887764
No 303
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=24.83 E-value=34 Score=21.03 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCchhhhhhhhc
Q psy15100 69 RLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqN 89 (165)
..+||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456999999999999999875
No 304
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=24.83 E-value=1.1e+02 Score=17.75 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWF 87 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WF 87 (165)
.+...+...++..++.+ -+ +.+.|+.|||+...+..|.
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn---~~~aA~~LGIsr~tL~rkl 54 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PS---TRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CS---HHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CC---HHHHHHHhCCCHHHHHHHH
Confidence 35566777888888877 23 4567999999998876554
No 305
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=24.68 E-value=41 Score=23.04 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-.. ...+||+..|++...+-..|.|+.
T Consensus 8 l~aA~~lf~~~Gy~~~-s~~~Ia~~agvskgtlY~~F~sKe 47 (179)
T 2eh3_A 8 LEVSKELFFEKGYQGT-SVEEIVKRANLSKGAFYFHFKSKE 47 (179)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCcHHHHHHcCCHH
Confidence 4455566888777543 366789999999999999998863
No 306
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=24.64 E-value=41 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchh----hhhhhhcch
Q psy15100 69 RLNLALSLSLTETQ----VKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~q----V~~WFqNRR 91 (165)
..+||..+|++... |..|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 46789999999999 999987754
No 307
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=24.55 E-value=40 Score=22.08 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 53 ALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 53 ~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
.|...|....-.+ ..+||..+|++...|..|..++|.
T Consensus 17 ~Lk~~lr~~~glt---q~eLA~~lGis~~~is~ie~G~~~ 53 (104)
T 3trb_A 17 ILAEELGFLDKMS---ANQLAKHLAIPTNRVTAILNGARS 53 (104)
T ss_dssp HHHHHHHHTTSCC---HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCC---HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3443333344444 557899999999999999987653
No 308
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.52 E-value=27 Score=24.81 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++...+.|.+..|-.. ....||++.|++...|-.+|.|+
T Consensus 14 l~aA~~lf~~~Gy~~~-s~~~IA~~AGvs~gt~Y~yF~sK 52 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQS-QVSKIAKQAGVADGTIYLYFKNK 52 (206)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCChhHHHHHcCCH
Confidence 5555666877776432 36678999999999999999986
No 309
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=24.42 E-value=38 Score=23.84 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++.-.+.|....|-.. ....||++.|++...|-.+|.||-.
T Consensus 15 l~aA~~lf~~~G~~~~-s~~~IA~~aGvsk~tlY~~F~sKe~ 55 (203)
T 3cdl_A 15 VQAAIAEFGDRGFEIT-SMDRIAARAEVSKRTVYNHFPSKEE 55 (203)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHTTSSSHHH
T ss_pred HHHHHHHHHHcCchhc-CHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4444555777777543 3677899999999999999998743
No 310
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=24.34 E-value=69 Score=22.12 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 48 YEQLVALENKFKT-----TRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 48 ~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
.+++..|+..|.. +.+.+..+...+...+|+....|+..|.
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~ 80 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQ 80 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6677888888853 4588999999888899998877777774
No 311
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=24.32 E-value=49 Score=23.05 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++.....|....|-.. ....||++.|++...+-..|.++
T Consensus 18 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 18 YDACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCH
Confidence 4455566777776443 56788999999999999999886
No 312
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.32 E-value=25 Score=21.90 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
..+| ..+..+.--......+||++||++...|+....
T Consensus 17 ~~IL-~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 17 QRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHH-HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4444 444444411223356789999999999887664
No 313
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.23 E-value=39 Score=25.02 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-.. ...+||+..|++...|..+|.|+-.
T Consensus 54 l~AA~~lf~e~G~~~~-Ti~~IA~~AGvs~~t~Y~yF~sKe~ 94 (260)
T 2of7_A 54 RAATYGLIRQQGYEAT-TVEQIAERAEVSPSTVLRYFPTRED 94 (260)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCcccc-cHHHHHHHhCCChHHHHHHcCCHHH
Confidence 4455556777776443 3667899999999999999998643
No 314
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=24.07 E-value=33 Score=24.06 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.....|....|-.. ....||+..|++...|-..|.+|.
T Consensus 15 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (216)
T 3s5r_A 15 LLDAATTLFAEQGIAAT-TMAEIAASVGVNPAMIHYYFKTRD 55 (216)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHTTTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCcccC-CHHHHHHHHCCCHHHHHHHcCCHH
Confidence 35556666877776543 366789999999999999999864
No 315
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=24.05 E-value=40 Score=23.63 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||++.|++...|-..|.|+-
T Consensus 19 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~ 58 (217)
T 3nrg_A 19 IDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKK 58 (217)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCTTGGGGTCSSHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHcCCHH
Confidence 445555677777643 3467789999999999999999863
No 316
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.90 E-value=38 Score=23.84 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++.-...|.+..|-... ...||++.|++...|-.+|.||
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sK 58 (199)
T 3crj_A 20 MQATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTK 58 (199)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCH
Confidence 44555668888775433 6678999999999999999986
No 317
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.81 E-value=42 Score=23.54 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|-.. ....||+..|++...|-.+|.||-
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 20 LDIAATLFAERGLRAT-TVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred HHHHHHHHHHcCchhc-CHHHHHHHhCCCchhHHHhcCCHH
Confidence 4445566877776543 367789999999999999999863
No 318
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=23.80 E-value=27 Score=22.96 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhhhhcchhhh
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRRTKW 94 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR~k~ 94 (165)
+..|+...|+...+.+..|..+.-++
T Consensus 28 K~~I~~~~gip~~~QrLi~~Gk~L~D 53 (106)
T 3m62_B 28 KTKLAQSISCEESQIKLIYSGKVLQD 53 (106)
T ss_dssp HHHHHHTTTSCGGGCEEEETTEECCT
T ss_pred HHHHHHHHCCChhhEEEEECCEECCC
Confidence 56678888999999999998765544
No 319
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.79 E-value=34 Score=24.60 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHhC-CCchhhhhhhhcch
Q psy15100 63 YLSVCERLNLALSLS-LTETQVKIWFQNRR 91 (165)
Q Consensus 63 ~p~~~~r~~La~~lg-l~~~qV~~WFqNRR 91 (165)
.++.+|.+.|...+. ...-.|..||-||+
T Consensus 58 ~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 58 ELSAEEMDRLMAVVHNPRQFKVPDWFLNRK 87 (152)
T ss_dssp TSCHHHHHHHHHHHHSCSSCCCCCCSCSCC
T ss_pred cCCHHHHHHHHHHHHhhcccCcchhhhhhh
Confidence 466667777666653 12234778999976
No 320
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=23.68 E-value=36 Score=23.08 Aligned_cols=41 Identities=5% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-. ....+||++.|++...+-..|.|+-.
T Consensus 18 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 58 (177)
T 3kkc_A 18 YNAFISLLQENDYSK-ITVQDVIGLANVGRSTFYSHYESKEV 58 (177)
T ss_dssp HHHHHHHTTTSCTTT-CCHHHHHHHHCCCHHHHTTTCSSTHH
T ss_pred HHHHHHHHHhCChhH-hhHHHHHHHhCCcHhhHHHHcCCHHH
Confidence 445555566666533 34667899999999999999998743
No 321
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.49 E-value=31 Score=23.59 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||++.|++...|-.+|.|+-
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 14 VETAAEIADANGVQE-VTLASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHcCCCchHHHHHcCCHH
Confidence 455566677777543 3366789999999999999999863
No 322
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.38 E-value=31 Score=23.39 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|- ......||++.|++...|-.+|.||.
T Consensus 10 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 10 IEAALRLYMKKPPH-EVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHTTSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCCc-cCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 34444557666653 23466789999999999999999864
No 323
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=23.38 E-value=40 Score=22.16 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhhhhhhh
Q psy15100 69 RLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFq 88 (165)
..++|+.+|++...|+.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 324
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.37 E-value=1.3e+02 Score=20.41 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhC---CCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKT---TRYLSVCERLNLALSLS---LTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lg---l~~~qV~~WFq 88 (165)
+.++.+++..|...|.. +.+.+..+-..+...++ .+...++..|+
T Consensus 13 ~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~ 63 (183)
T 1s6c_A 13 TNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFN 63 (183)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45889999999999976 34688888887777765 34555665554
No 325
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=23.22 E-value=1.1e+02 Score=22.17 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-----CCCchhhhhhhhcchhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSL-----SLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~l-----gl~~~qV~~WFqNRR~k~k 95 (165)
..+|..+.++|+-..+.... ...+++||..+ +++++.|++...|=|.|-.
T Consensus 152 ~~LT~rE~~vL~~l~~~~~~--~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPRQ--VFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTTC--CBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHCCCc--eecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 45999999999887764221 12356778888 8999999998877666643
No 326
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.09 E-value=41 Score=22.08 Aligned_cols=20 Identities=10% Similarity=-0.107 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhhhhhhh
Q psy15100 69 RLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFq 88 (165)
+.++|+.+|++...|+.|-+
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 327
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=23.08 E-value=46 Score=22.89 Aligned_cols=40 Identities=8% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-. .....||++.|++...|..+|.||.
T Consensus 14 l~aA~~l~~~~G~~~-~t~~~IA~~Agvs~~tly~~F~sK~ 53 (194)
T 3dpj_A 14 VAAADELFYRQGFAQ-TSFVDISAAVGISRGNFYYHFKTKD 53 (194)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHcCCHH
Confidence 444555577777643 3366789999999999999999874
No 328
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=23.00 E-value=52 Score=23.35 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=22.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 56 NKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 56 ~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..|....|-. .....||+..|++...|-.+|.||-
T Consensus 35 ~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 35 QVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp HC------CC-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHH
Confidence 3466666643 3367789999999999999999863
No 329
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=22.98 E-value=2.1e+02 Score=21.98 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhh
Q psy15100 39 DLVPESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93 (165)
Q Consensus 39 ~~~~R~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k 93 (165)
..+....+|.++...++..|..-.. ++..+.++ .-+=+..||+..|.|-+.|
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 3455678999999999888876543 44444443 2346677888666655544
No 330
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=22.91 E-value=38 Score=23.68 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-.. ....||++.|++...|...|.|+-
T Consensus 25 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 25 KAVALELFLTKGYQET-SLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHHHHHcChhhC-CHHHHHHHhCCCHHHHHHhcCCHH
Confidence 4455566777776443 366789999999999999998863
No 331
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=22.67 E-value=32 Score=24.30 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|.+..|-.. ....||+..|++...|-.+|.||-
T Consensus 29 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~ 68 (214)
T 2zb9_A 29 LHAVGELLLTEGTAQL-TFERVARVSGVSKTTLYKWWPSKG 68 (214)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHHCCCHHHHHHHCCCHH
Confidence 4445556777776332 366789999999999999999863
No 332
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=22.64 E-value=1.2e+02 Score=19.85 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHhC--CCchhhhhhhh
Q psy15100 44 SAFTYEQLVALENKFKTT------RYLSVCERLNLALSLS--LTETQVKIWFQ 88 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~------~~p~~~~r~~La~~lg--l~~~qV~~WFq 88 (165)
..++.+++..|+..|..- .+.+..+...+...+| ++...|..+|.
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 57 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLID 57 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 347889999999998632 3678888877777776 44556666664
No 333
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.63 E-value=42 Score=23.59 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++.-.+.|....|-.. ....||+..|++...|-.+|.|+
T Consensus 18 l~aA~~lf~~~Gy~~t-s~~~IA~~agvs~gtlY~yF~sK 56 (205)
T 1rkt_A 18 LEAAKTVFKRKGFELT-TMKDVVEESGFSRGGVYLYFSST 56 (205)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHHCCCcchhhhhCCCH
Confidence 4444555888877443 36678999999999999999986
No 334
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=22.50 E-value=38 Score=24.09 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-. ....+||+..|++...|-.+|.||..
T Consensus 28 l~AA~~lf~e~G~~~-~s~~~IA~~AGVsk~tlY~~F~sKe~ 68 (207)
T 3bjb_A 28 LEAAIELATEKELAR-VQMHEVAKRAGVAIGTLYRYFPSKTH 68 (207)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 455556688877643 23667899999999999999998643
No 335
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=22.45 E-value=34 Score=24.15 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchh
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 92 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~ 92 (165)
++...+.|....|-. .....||++.|++...|-.+|.||-.
T Consensus 21 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~ 61 (221)
T 3c2b_A 21 LDQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDG 61 (221)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 455556677777643 33667899999999999999998643
No 336
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=22.41 E-value=53 Score=20.56 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhhhhC
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~kr~~ 98 (165)
+.++.-.|+.|+||..+-... ==.|||.+|+.++
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq--------------aRRNRRRRWR~RQ 51 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQ 51 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH--------------HHHHHHHHHHHHH
Confidence 345556689999988542111 1257888887754
No 337
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=22.36 E-value=14 Score=17.17 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=10.4
Q ss_pred chhhhhhhhcchhh
Q psy15100 80 ETQVKIWFQNRRTK 93 (165)
Q Consensus 80 ~~qV~~WFqNRR~k 93 (165)
++.|-+-++|||.-
T Consensus 3 kkpvpiiycnrrtg 16 (21)
T 8tfv_A 3 KKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCEEEEGGGT
T ss_pred CCcccEEEEcCccc
Confidence 45677888998864
No 338
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=22.31 E-value=48 Score=23.10 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|....|-... ...||+..|++...|-..|.||.
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~gtlY~yF~sKe 55 (194)
T 2nx4_A 16 TAAAWRLIAARGIEAAN-MRDIATEAGYTNGALSHYFAGKD 55 (194)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCcccCC-HHHHHHHhCCCcchHHHhCcCHH
Confidence 33445558888775433 56789999999999999999863
No 339
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.25 E-value=1.8e+02 Score=19.42 Aligned_cols=45 Identities=13% Similarity=-0.071 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHhCCCchhhhhh
Q psy15100 41 VPESAFTYEQLVALENKFKTTRYLSVCE-RLNLALSLSLTETQVKIW 86 (165)
Q Consensus 41 ~~R~~~s~~Ql~~Le~~F~~~~~p~~~~-r~~La~~lgl~~~qV~~W 86 (165)
+.+..-|.+|+.+-+..+..+. +..++ +..|+...|+++..++.=
T Consensus 15 ~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr~A 60 (104)
T 1wj7_A 15 KQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECVIA 60 (104)
T ss_dssp CCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHHHH
Confidence 3345678999998888876643 44444 444566669988876543
No 340
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.94 E-value=34 Score=23.35 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++...+.|....|-. .....||+..|++...|-.+|.|+-
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (194)
T 2g7s_A 14 LQCARTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKS 53 (194)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHH
Confidence 444455577776633 3467789999999999999999863
No 341
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=21.90 E-value=43 Score=22.79 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-. .....||++.|++...|-..|.||-
T Consensus 16 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 16 LAVAEALIQKDGYNA-FSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCcchhhhcCCCHH
Confidence 445555677666533 2366789999999999999999863
No 342
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=21.88 E-value=72 Score=22.28 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHhCCCch-----hhhhhhhcchhh
Q psy15100 62 RYLSVCERLNLALSLSLTET-----QVKIWFQNRRTK 93 (165)
Q Consensus 62 ~~p~~~~r~~La~~lgl~~~-----qV~~WFqNRR~k 93 (165)
--.+.+.|.+||.+||++.. +..+|..-.-.+
T Consensus 79 lDsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm~ 115 (130)
T 2gqb_A 79 IDSSLSARKELAKELGYSGDMNDSASMNIWLHKQVMS 115 (130)
T ss_dssp CCCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHH
Confidence 34788999999999998743 577898744333
No 343
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=21.77 E-value=1e+02 Score=21.86 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---CCchhhhhhhhcchhhhh
Q psy15100 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLS---LTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 44 ~~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---l~~~qV~~WFqNRR~k~k 95 (165)
..+|..+.++|+-..+.... ...+++||..++ ++++.|++...|=|.|-.
T Consensus 144 ~~Lt~rE~~vl~~l~~~~~~--~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENAGK--VVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCCHHHHHHHHHHHHTTTS--CEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred EecCHHHHHHHHHHHHCCCc--eEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 35899999999877664221 234678899998 999999999887776654
No 344
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=21.38 E-value=51 Score=23.51 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 50 QLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 50 Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
-++.-...|....|-.. ....||+..|++...|-..|.||-
T Consensus 14 Il~aA~~lf~~~Gy~~t-s~~~IA~~AGvskgtlY~~F~sKe 54 (215)
T 1ui5_A 14 IIGAAADLFDRRGYEST-TLSEIVAHAGVTKGALYFHFAAKE 54 (215)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCCchhhHhhCCCHH
Confidence 35566667888887443 367789999999999999999863
No 345
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=21.24 E-value=1.7e+02 Score=18.72 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC--Cchhhhhhh
Q psy15100 45 AFTYEQLVALENKFK-----TTRYLSVCERLNLALSLSL--TETQVKIWF 87 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~-----~~~~p~~~~r~~La~~lgl--~~~qV~~WF 87 (165)
.++.+++..|+..|. .+.+.+..+...+...+|+ +...+...|
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 53 (153)
T 3ox6_A 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELS 53 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 488999999999985 3568999988888777764 444455444
No 346
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=21.05 E-value=1.3e+02 Score=18.55 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 45 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
.++..++.+|...+..+...+ ..+||..+|++...|.....
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t---~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPIT---SEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEE---HHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCC---HHHHHHHHCcCHHHHHHHHH
Confidence 467888888888776444433 56789999999988876654
No 347
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=21.01 E-value=28 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHH---HhcCC-CCHHHHHHHHHHhCCC-chhhhhhhh
Q psy15100 46 FTYEQLVALENKF---KTTRY-LSVCERLNLALSLSLT-ETQVKIWFQ 88 (165)
Q Consensus 46 ~s~~Ql~~Le~~F---~~~~~-p~~~~r~~La~~lgl~-~~qV~~WFq 88 (165)
+|..|..+++..- +...+ |+ ..+||+.+|++ ...|..|..
T Consensus 4 lt~~q~~i~~~i~~~~~~~g~~ps---~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPT---RAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCC---HHHHHHHTTCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcc---HHHHHHHhCCCChHHHHHHHH
Confidence 6777776666553 34455 34 45799999999 889999975
No 348
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=20.82 E-value=21 Score=26.24 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|.+..|- ......||++.|++...|-.+|.||-
T Consensus 24 l~AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sKe 63 (251)
T 3npi_A 24 LDIALSLFSELGFS-DAKLEAIAKKSGMSKRMIHYHFGDKR 63 (251)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHCSHH
T ss_pred HHHHHHHHHHcCcc-ccCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 44445556655542 12356789999999999999999874
No 349
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=20.76 E-value=52 Score=22.10 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhhhhcch
Q psy15100 69 RLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 69 r~~La~~lgl~~~qV~~WFqNRR 91 (165)
..+||..+|++...|..|..+++
T Consensus 56 Q~eLA~~lGis~~~Is~iE~G~~ 78 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998765
No 350
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.69 E-value=20 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=7.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcc
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNR 90 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNR 90 (165)
++...+.|.+..|-. .....||++.|++...|..+|.||
T Consensus 36 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK 74 (212)
T 2np3_A 36 LTAARVCFAERGFDA-TSLRRIAETAGVDQSLVHHFYGTK 74 (212)
T ss_dssp HHHHHHHC----------------------------CCC-
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHhCCH
Confidence 455556666666543 346778999999999999999886
No 351
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=20.63 E-value=52 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.0
Q ss_pred HHHHHHhCCCchhhhhhhhcch
Q psy15100 70 LNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 70 ~~La~~lgl~~~qV~~WFqNRR 91 (165)
.+||..+|++...|..|..+++
T Consensus 85 ~elA~~lGis~s~is~~E~G~~ 106 (141)
T 3kxa_A 85 SELATAAGLPQPYLSRIENSKQ 106 (141)
T ss_dssp HHHHHHTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4689999999999999998764
No 352
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.60 E-value=61 Score=22.62 Aligned_cols=40 Identities=13% Similarity=-0.046 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.-.+.|....|-. .....||+..|++...|-..|.||-
T Consensus 13 l~aA~~lf~~~G~~~-ts~~~IA~~aGvs~gtlY~~F~sKe 52 (197)
T 2gen_A 13 LQAALACFSEHGVDA-TTIEMIRDRSGASIGSLYHHFGNKE 52 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCCCHHHHHHHTCSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHCCCHH
Confidence 445556688887744 3366789999999999999999863
No 353
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=20.54 E-value=22 Score=25.03 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 51 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 51 l~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
++.....|....|-. .....||+..|++...|-..|.||-
T Consensus 32 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 71 (217)
T 3mvp_A 32 LQVAKDLFSDKTYFN-VTTNEIAKKADVSVGTLYAYFASKE 71 (217)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCChhHHHHHcCCHH
Confidence 445555577777533 2356789999999999999999863
No 354
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=20.42 E-value=91 Score=26.12 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcchhhhh
Q psy15100 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR~k~k 95 (165)
++..+..+|...|-.... .....++||..+||+...|+.+...-+.|.|
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 566667777776642211 1234678899999999999999877666666
No 355
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=20.26 E-value=42 Score=22.94 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHhCCCchhhhhhhhc
Q psy15100 63 YLSVCERLNLALSLSLTETQVKIWFQN 89 (165)
Q Consensus 63 ~p~~~~r~~La~~lgl~~~qV~~WFqN 89 (165)
.++.++.++|.+.+..+.++|+.|++.
T Consensus 7 ~lspe~l~~L~~~t~fs~~elk~~y~~ 33 (118)
T 1tuz_A 7 LISPSDFAQLQKYMEYSTKKVSDVLKL 33 (118)
T ss_dssp CSCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHcccCHHHHHHHHHH
Confidence 345666777777777888999999653
No 356
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.19 E-value=44 Score=21.13 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 50 QLVALENKFKTTR---YLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 50 Ql~~Le~~F~~~~---~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
+..+| ..+..+. ..+ ..+||++||++.+.|+..+.
T Consensus 12 ~~~IL-~~L~~~~pg~~~t---~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 12 EQRIL-KFLEELGEGKATT---AHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHH-HHHHHHCTTCCBC---HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH-HHHHHcCCCCCcC---HHHHHHHHCcCHHHHHHHHH
Confidence 34455 3444444 444 46789999999999987764
No 357
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=20.12 E-value=43 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhCCCchhhhhhhhcch
Q psy15100 53 ALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91 (165)
Q Consensus 53 ~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~~WFqNRR 91 (165)
...+.|.+..|- ......||+..|++...|-.+|.||-
T Consensus 16 aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 16 ATVREVADHGFS-ATSVGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHcChH-hcCHHHHHHHhCCCchHHHHHcCCHH
Confidence 334445554432 22366789999999999999999863
No 358
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.07 E-value=83 Score=22.68 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCchhhhhhhh
Q psy15100 46 FTYEQLVALENKFK---TTRYLSVCERLNLALSLSLTETQVKIWFQ 88 (165)
Q Consensus 46 ~s~~Ql~~Le~~F~---~~~~p~~~~r~~La~~lgl~~~qV~~WFq 88 (165)
+|..|.++|+-..+ ...+|. ...+||..+||+...|..+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~--s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPP--SVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHcCCCcHHHHHHHH
Confidence 67889888887643 445532 256789999999887766654
Done!