RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15100
(165 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 89.1 bits (221), Expect = 6e-25
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
+T Q + LE +F RYL+ R+ +A +LSLTE Q+KIWFQNRR KWKK+N
Sbjct: 3 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 86.4 bits (214), Expect = 8e-24
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
+FT EQ+ ALE +F+ T Y V R LA + L E ++++WF NRR KW+++
Sbjct: 7 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 86.0 bits (213), Expect = 1e-23
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
+T Q + LE +F YL+ R +A L+LTE QVKIWFQNRR K KK N
Sbjct: 19 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 82.6 bits (204), Expect = 2e-22
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96
F+ +Q + LE KF+T +YLS ER LA L L+E QVK WFQNRR KW++
Sbjct: 6 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 81.8 bits (202), Expect = 5e-22
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
+QL L + + L L+ +++WFQN+R K KK++
Sbjct: 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 80.3 bits (198), Expect = 2e-21
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96
++ QL LE ++ ++++ +R ++ + SL+E Q+ IWFQNRR K KK
Sbjct: 7 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 79.6 bits (196), Expect = 4e-21
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99
F+ Q+ LE +FK +YLS ER +LA + LT TQVKIWFQN R K K+Q
Sbjct: 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 78.8 bits (194), Expect = 7e-21
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97
AFT +QL LE +F Y+S R LA L+L E+ +K+WFQNRR K K+Q
Sbjct: 5 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 76.9 bits (189), Expect = 4e-20
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97
FT +QL LE F+ RY + R +A+ +LTE +V++WF+NRR KW+K+
Sbjct: 7 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 76.5 bits (188), Expect = 4e-20
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97
+ ALE F S E + +A L+L + V++WF NRR + K+
Sbjct: 5 TISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 76.5 bits (188), Expect = 6e-20
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
F+ QL LE F+ T+Y + R LA +LTE ++++WFQNRR + +KQ+
Sbjct: 8 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 61
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 75.8 bits (186), Expect = 2e-19
Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 18 AKTPPVRRNRGRSPNTQTPSEDLVPES-----AFTYEQLVALENKFKTTRYLSVCERLNL 72
A+T + + P T SE + FT QL LE +F +YLS R+ +
Sbjct: 1 ARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI 60
Query: 73 ALSLSLTETQVKIWFQNRRTKWKKQN 98
A +L L ETQVKIWFQNRR K KK+
Sbjct: 61 AATLELNETQVKIWFQNRRMKQKKRE 86
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 75.0 bits (184), Expect = 2e-19
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96
FT QL+ALE KF+ +YLS+ ER + SLSLTETQVKIWFQNRR K K+
Sbjct: 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 74.5 bits (183), Expect = 2e-19
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 93
P +AF+ EQL L+ +F RYL+ R L+ L L E Q+KIWFQN R K
Sbjct: 2 PRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 74.6 bits (183), Expect = 3e-19
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
FT Q+ LE F RYL+ +L+ L+L QVKIWF+NRR + K Q+
Sbjct: 7 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 71.4 bits (175), Expect = 3e-18
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 42 PESAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRR 91
P FT Q L FK + S ++ ++ L L + V +F N R
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 71.5 bits (175), Expect = 4e-18
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 44 SAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95
S+ + + LE F+ + L+ E+ +A +T QV++WF N+R + K
Sbjct: 2 SSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 70.9 bits (174), Expect = 5e-18
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 47 TYEQLVALENKFKT-TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96
T + LE F T++ L+ L ++ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 72.0 bits (176), Expect = 5e-18
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLAL---------------SLSLTETQVKIWFQN 89
+ E L +E+ F +Y +R +A +T +V WF N
Sbjct: 6 TWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFAN 65
Query: 90 RRTKWKKQN 98
RR + K++
Sbjct: 66 RRKEIKRRA 74
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 71.6 bits (175), Expect = 6e-18
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
+ +LE F S+ + ++A L L + V++WF NRR K K+ +
Sbjct: 14 SIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 70.7 bits (173), Expect = 9e-18
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
+ VALE F + + + +A L++ + +++WF NRR K K+ N
Sbjct: 4 SIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 69.2 bits (169), Expect = 4e-17
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 45 AFTYEQLVALENKFK---TTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGM 101
F + L F + Y S + LA +T +QV WF N+R ++KK
Sbjct: 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66
Query: 102 D 102
Sbjct: 67 Q 67
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 68.7 bits (168), Expect = 5e-17
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 46 FTYEQLVALENKFKTTR---YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96
FT E + LE+ F YL NL + SL+ Q+K W NRR K K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 68.9 bits (168), Expect = 8e-17
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 45 AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 98
FT Q LE +F+ RYLS ER +LA + LT TQVKIWFQN R K K+
Sbjct: 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 66.2 bits (161), Expect = 7e-16
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 44 SAFTYEQLVALENKF-KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 97
+ T +Q+ LE F K ++ +A LTE Q + WF+ R +W++
Sbjct: 6 ATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 65.6 bits (159), Expect = 1e-15
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 21/74 (28%)
Query: 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLS---------------------LTETQVK 84
+ L ++ + S ER L + +TE +V
Sbjct: 4 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 63
Query: 85 IWFQNRRTKWKKQN 98
WF NRR + ++
Sbjct: 64 NWFANRRKEEAFRH 77
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 64.0 bits (156), Expect = 3e-15
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 46 FTYEQLVALENKFKT-TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 95
E LE F + T+Y L+ L + +++ WF++RR + K
Sbjct: 8 NKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 63.6 bits (154), Expect = 8e-15
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNS 105
T EQL L+ F + L+ E L LT ++ WF ++ + M+++
Sbjct: 11 KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDE 70
Query: 106 PT 107
Sbjct: 71 SN 72
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 62.8 bits (153), Expect = 1e-14
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 46 FTYEQLVALENKFKTTR---YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 96
+ + Y + E+ +A +LT QV WF N R + +
Sbjct: 9 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 61.3 bits (148), Expect = 5e-14
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 45 AFTYEQLVALENKF-KTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 99
+ E L L++ Y L+ L L + + +FQN+R K P
Sbjct: 13 KISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 53.6 bits (128), Expect = 6e-11
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 46 FTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNS 105
T EQL L++ F ++ + L L ++ WF + R K ++
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDN 69
Query: 106 PTVPT 110
+ P+
Sbjct: 70 ASGPS 74
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 52.7 bits (126), Expect = 1e-10
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 13 SSATSAKTPPVRRNRGRSPNTQTPSEDLVPESAFTYEQLVA-LENKFKTTRYLSVCERLN 71
SS +S P + T+ +E E+++A E +
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQK--------EKMLAFAERLGWRIQKHDDVAVEQ 53
Query: 72 LALSLSLTETQVKIWFQNRRTKWKKQ 97
+ +KIW N +
Sbjct: 54 FCAETGVRRQVLKIWMHNNKNSGPSS 79
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 26.5 bits (58), Expect = 1.4
Identities = 2/18 (11%), Positives = 7/18 (38%)
Query: 81 TQVKIWFQNRRTKWKKQN 98
+ + W + +W +
Sbjct: 213 MKYRDWIIRSKFEWHTLS 230
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Cellvibrio cellulosa [TaxId: 155077]}
Length = 324
Score = 26.4 bits (58), Expect = 1.8
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 76 LSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTVPTCPGGSHSGPAFPFHPALSGPGGHYS 135
L+L W N RTKW + GG ++ +G GG+ S
Sbjct: 6 LTLDGNPAANWLNNARTKWSASRAD---VVLSYQQNNGG--WPKNLDYNSVGNGGGGNES 60
Query: 136 GT 137
GT
Sbjct: 61 GT 62
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 24.8 bits (54), Expect = 1.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 85 IWFQNRRTKWKKQNPGMDVNSPTV 108
+ Q R + KK++P VN
Sbjct: 11 FFVQTCREEHKKKHPDASVNFSEF 34
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 24.8 bits (54), Expect = 2.1
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 85 IWFQNRRTKWKKQNPGMDV 103
++ R K K ++PG+ +
Sbjct: 12 LFCSEYRPKIKGEHPGLSI 30
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 24.0 bits (52), Expect = 4.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 85 IWFQNRRTKWKKQNPGMDVN 104
+W + R K++NPG+ V
Sbjct: 13 LWLNSARESIKRENPGIKVT 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.126 0.390
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,001
Number of extensions: 24903
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 42
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.8 bits)