BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15107
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32242|OTX1_HUMAN Homeobox protein OTX1 OS=Homo sapiens GN=OTX1 PE=1 SV=1
Length = 354
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 70/85 (82%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PYG+NG+GL+ MD LH S+GY RKQRRERTTFTR+QLDVLE+LF
Sbjct: 1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY--PATPRKQRRERTTFTRSQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|P80205|OTX1_MOUSE Homeobox protein OTX1 OS=Mus musculus GN=Otx1 PE=2 SV=1
Length = 355
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 71/87 (81%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PYG+NG+GL+ MD LH S+GY RKQRRERTTFTR+QLDVLE+LF
Sbjct: 1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY--PATPRKQRRERTTFTRSQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|Q63410|OTX1_RAT Homeobox protein OTX1 OS=Rattus norvegicus GN=Otx1 PE=2 SV=1
Length = 355
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 70/85 (82%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PYG+NG+GL+ MD LH S+GY RKQRRERTTFTR+QLDVLE+LF
Sbjct: 1 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGY--PATPRKQRRERTTFTRSQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|Q28FN6|OTX2_XENTR Homeobox protein OTX2 OS=Xenopus tropicalis GN=otx2 PE=2 SV=1
Length = 289
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY VNG+ L+ MD LH S+GY RKQRRERTTFTRAQLDVLE+LF
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY--PATPRKQRRERTTFTRAQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|Q91994|OTX1B_DANRE Homeobox protein OTX1 B OS=Danio rerio GN=otx1b PE=2 SV=1
Length = 323
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 69/85 (81%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY +NG+GLS MD LH S+GY RKQRRERTTFTR+QLD+LE+LF
Sbjct: 1 MMSYLKQPPYAMNGLGLSGAAMDLLHPSVGY--PATPRKQRRERTTFTRSQLDILEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|P80206|OTX2_MOUSE Homeobox protein OTX2 OS=Mus musculus GN=Otx2 PE=1 SV=1
Length = 289
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY VNG+ L+ MD LH S+GY RKQRRERTTFTRAQLDVLE+LF
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY--PATPRKQRRERTTFTRAQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|P32243|OTX2_HUMAN Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1
Length = 289
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY VNG+ L+ MD LH S+GY RKQRRERTTFTRAQLDVLE+LF
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY--PATPRKQRRERTTFTRAQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|Q91813|OTX2A_XENLA Homeobox protein OTX2-A OS=Xenopus laevis GN=otx2-a PE=1 SV=1
Length = 288
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY VNG+ L+ MD LH S+GY RKQRRERTTFTRAQLD+LE+LF
Sbjct: 1 MMSYLKQPPYAVNGLSLTASGMDLLHQSVGY--PATPRKQRRERTTFTRAQLDILEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|Q6DKN2|OTX2B_XENLA Homeobox protein OTX2-B OS=Xenopus laevis GN=otx2-b PE=2 SV=1
Length = 289
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY VNG+ L+ MD LH S+GY RKQRRERTTFTRAQLD+LE+LF
Sbjct: 1 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGY--PATPRKQRRERTTFTRAQLDILEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|Q91981|OTX2_DANRE Homeobox protein OTX2 OS=Danio rerio GN=otx2 PE=2 SV=1
Length = 289
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK PY VNG+ L+ MD LH S+GY RKQRRERTTFTRAQLDVLE+LF
Sbjct: 1 MMSYLKQPPYTVNGLSLTTSGMDLLHPSVGY--PATPRKQRRERTTFTRAQLDVLEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQGY 115
KTRYPDIFMREEVALKINLPESRVQ +
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQVW 85
>sp|Q9PT61|OTX5B_XENLA Homeobox protein otx5-B OS=Xenopus laevis GN=otx5-b PE=2 SV=1
Length = 290
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 69/85 (81%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SY+K Y VNG+ L+ MD LHS++GY N RKQRRERTTFTRAQLD+LESLF
Sbjct: 1 MMSYIKQPHYAVNGLTLAGTGMDLLHSAVGY--PTNPRKQRRERTTFTRAQLDILESLFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|Q9PVM0|OTX5A_XENLA Homeobox protein otx5-A OS=Xenopus laevis GN=otx5-a PE=2 SV=1
Length = 290
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 68/85 (80%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SY+K Y VNG+ L+ MD LHS++GY RKQRRERTTFTRAQLD+LESLF
Sbjct: 1 MMSYIKQPHYAVNGLTLAGTGMDLLHSAVGY--PTTPRKQRRERTTFTRAQLDILESLFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|Q28EM7|OTX5_XENTR Homeobox protein otx5 OS=Xenopus tropicalis GN=otx5 PE=2 SV=1
Length = 290
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 68/85 (80%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SY+K Y VNG+ L+ MD LHS++GY RKQRRERTTFTRAQLD+LE+LF
Sbjct: 1 MMSYIKQPHYAVNGLTLAGTGMDLLHSAVGY--PTTPRKQRRERTTFTRAQLDILEALFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|Q90267|OTX1A_DANRE Homeobox protein OTX1 A OS=Danio rerio GN=otx1a PE=2 SV=1
Length = 338
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 70/85 (82%), Gaps = 5/85 (5%)
Query: 32 MASYLKSAPYGVNGIGL---SMDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFG 88
M SYLK APY +NG+GL +MD LH S+GY N RKQRRERTTFTR QLD+LESLF
Sbjct: 1 MMSYLKQAPYAMNGLGLGGATMDLLHPSVGY--PTNPRKQRRERTTFTRTQLDILESLFA 58
Query: 89 KTRYPDIFMREEVALKINLPESRVQ 113
KTRYPDIFMREEVALKINLPESRVQ
Sbjct: 59 KTRYPDIFMREEVALKINLPESRVQ 83
>sp|P22810|HMOC_DROME Homeotic protein ocelliless OS=Drosophila melanogaster GN=oc PE=2
SV=2
Length = 542
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 57/74 (77%), Gaps = 8/74 (10%)
Query: 40 PYGVNGIGLSMDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMRE 99
P+G+ +G S + N RKQRRERTTFTRAQLDVLE+LFGKTRYPDIFMRE
Sbjct: 47 PHGLEAVGFSQG--------MWGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMRE 98
Query: 100 EVALKINLPESRVQ 113
EVALKINLPESRVQ
Sbjct: 99 EVALKINLPESRVQ 112
>sp|O54751|CRX_MOUSE Cone-rod homeobox protein OS=Mus musculus GN=Crx PE=2 SV=1
Length = 299
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%), Gaps = 6/88 (6%)
Query: 32 MASYLKSAP-YGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLF 87
M +Y+ P Y VN + LS +D +H ++ Y S RKQRRERTTFTR+QL+ LE+LF
Sbjct: 1 MMAYMNPGPHYSVNALALSGPNVDLMHQAVPY--SSAPRKQRRERTTFTRSQLEELEALF 58
Query: 88 GKTRYPDIFMREEVALKINLPESRVQGY 115
KT+YPD++ REEVALKINLPESRVQ +
Sbjct: 59 AKTQYPDVYAREEVALKINLPESRVQVW 86
>sp|Q9XSK0|CRX_BOVIN Cone-rod homeobox protein OS=Bos taurus GN=CRX PE=2 SV=1
Length = 299
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 32 MASYLKSAP-YGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLF 87
M +Y+ P Y VN + LS +D +H ++ Y PS RKQRRERTTFTR+QL+ LE+LF
Sbjct: 1 MMAYMNPGPHYSVNALALSGPSVDLMHPAVSY-PSA-PRKQRRERTTFTRSQLEELEALF 58
Query: 88 GKTRYPDIFMREEVALKINLPESRVQ 113
KT+YPD++ REEVALKINLPESRVQ
Sbjct: 59 AKTQYPDVYAREEVALKINLPESRVQ 84
>sp|O43186|CRX_HUMAN Cone-rod homeobox protein OS=Homo sapiens GN=CRX PE=1 SV=1
Length = 299
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 32 MASYLKSAP-YGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLF 87
M +Y+ P Y VN + LS +D +H ++ Y PS RKQRRERTTFTR+QL+ LE+LF
Sbjct: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPY-PSA-PRKQRRERTTFTRSQLEELEALF 58
Query: 88 GKTRYPDIFMREEVALKINLPESRVQ 113
KT+YPD++ REEVALKINLPESRVQ
Sbjct: 59 AKTQYPDVYAREEVALKINLPESRVQ 84
>sp|Q8SQ03|CRX_CANFA Cone-rod homeobox protein OS=Canis familiaris GN=CRX PE=2 SV=1
Length = 299
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 32 MASYLKSAP-YGVNGIGLS---MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLF 87
M +Y+ P Y VN + LS +D +H ++ Y PS RKQRRERTTFTR+QL+ LE+LF
Sbjct: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVSY-PSA-PRKQRRERTTFTRSQLEELEALF 58
Query: 88 GKTRYPDIFMREEVALKINLPESRVQ 113
KT+YPD++ REEVALKINLPESRVQ
Sbjct: 59 AKTQYPDVYAREEVALKINLPESRVQ 84
>sp|Q26417|OTX_STRPU Homeobox protein OTX OS=Strongylocentrotus purpuratus GN=OTX PE=2
SV=1
Length = 371
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 47/48 (97%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RKQRRERTTFTRAQLDVLE+LF +TRYPDIFMREEVA+KINLPESRVQ
Sbjct: 129 RKQRRERTTFTRAQLDVLETLFSRTRYPDIFMREEVAMKINLPESRVQ 176
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 11/69 (15%)
Query: 58 GYIPSGNH-----------RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKIN 106
G P GNH RKQRR RTTFT QL+ LE++F +T YPD+F REE+A+KIN
Sbjct: 12 GTAPFGNHSTGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKIN 71
Query: 107 LPESRVQGY 115
L E+RVQ +
Sbjct: 72 LTEARVQVW 80
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 14/103 (13%)
Query: 17 AFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYI----PSGNH--RKQRR 70
AFP+ G C G++ + + + + +S++ Y PSG H RKQRR
Sbjct: 41 AFPAAGPPCPALGSSNCA--------LGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRR 92
Query: 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RTTFT AQL LE +F +T YPDI+ REE+ALKI+L E+RVQ
Sbjct: 93 IRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 14/103 (13%)
Query: 17 AFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYI----PSGNH--RKQRR 70
AFP+ G C G++ + + + + +S++ Y PSG H RKQRR
Sbjct: 41 AFPAAGPPCPALGSSNCA--------LGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRR 92
Query: 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RTTFT AQL LE +F +T YPDI+ REE+ALKI+L E+RVQ
Sbjct: 93 IRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 14/103 (13%)
Query: 17 AFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGYI----PSGNH--RKQRR 70
AFP+ G C G++ + + + + +S++ Y PSG H RKQRR
Sbjct: 41 AFPAAGPPCPALGSSNCA--------LGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRR 92
Query: 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RTTFT AQL LE +F +T YPDI+ REE+ALKI+L E+RVQ
Sbjct: 93 IRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
RKQRR RTTFT QL+ LE++F +T YPD+F REE+A+KINL E+RVQ +
Sbjct: 31 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVW 80
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 11/69 (15%)
Query: 58 GYIPSGNH-----------RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKIN 106
G P GNH RKQRR RTTF QL+ LE++F +T YPD+F REE+A+KIN
Sbjct: 12 GTAPFGNHSTGDFDDGFLRRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKIN 71
Query: 107 LPESRVQGY 115
L E+RVQ +
Sbjct: 72 LTEARVQVW 80
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 37 KSAPYGVNGIGLSMDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFGKTRYPDIF 96
+S+PY L D H L RKQRR RTTFT AQL LE +F +T YPDI+
Sbjct: 74 QSSPYAAVPYKLFTD--HGGLN-----EKRKQRRIRTTFTSAQLKELERVFAETHYPDIY 126
Query: 97 MREEVALKINLPESRVQ 113
REE+ALKI+L E+RVQ
Sbjct: 127 TREELALKIDLTEARVQ 143
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 37 KSAPYGVNGIGLSMDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFGKTRYPDIF 96
+S+PY L D H L RKQRR RTTFT AQL LE +F +T YPDI+
Sbjct: 74 QSSPYAAVPYKLFTD--HGGLN-----EKRKQRRIRTTFTSAQLKELERVFAETHYPDIY 126
Query: 97 MREEVALKINLPESRVQ 113
REE+ALKI+L E+RVQ
Sbjct: 127 TREELALKIDLTEARVQ 143
>sp|Q91ZK4|DMBX1_MOUSE Diencephalon/mesencephalon homeobox protein 1 OS=Mus musculus
GN=Dmbx1 PE=1 SV=1
Length = 381
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
HRKQRR RT FT QL+ LE F KT YPD+ MRE +A+ NLPE+RVQ
Sbjct: 67 QHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQ 116
>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein 1-B OS=Danio rerio
GN=dmbx1b PE=2 SV=1
Length = 369
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 63 GNHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
HRKQRR RT FT QL+ LE F KT YPD+ MRE +A+ NLPE+RVQ
Sbjct: 61 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQ 111
>sp|Q6SZ65|OTP_LYTVA Homeobox protein orthopedia OS=Lytechinus variegatus GN=Otp PE=2
SV=1
Length = 360
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
Query: 56 SLGYIPSGNHR----KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESR 111
S+G SGN KQ+R RT FT AQL+ LE F KT YPDIFMREE+A+++ L ESR
Sbjct: 96 SVGSSASGNDDDKPAKQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESR 155
Query: 112 VQ 113
VQ
Sbjct: 156 VQ 157
>sp|Q8JI10|DMX1A_DANRE Diencephalon/mesencephalon homeobox protein 1-A OS=Danio rerio
GN=dmbx1a PE=2 SV=1
Length = 388
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 63 GNHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
HRKQRR RT FT QL+ LE F KT YPD+ MRE +A+ NLPE+RVQ +
Sbjct: 66 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVW 118
>sp|Q8NFW5|DMBX1_HUMAN Diencephalon/mesencephalon homeobox protein 1 OS=Homo sapiens
GN=DMBX1 PE=1 SV=1
Length = 382
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
HRKQRR RT FT QL+ LE F KT YPD+ MRE +A+ NLPE+RVQ
Sbjct: 67 QHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQ 116
>sp|Q93356|HM37_CAEEL Homeobox protein ceh-37 OS=Caenorhabditis elegans GN=ceh-37 PE=2
SV=2
Length = 278
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RK RRERTT++R QL++LE+LF +T+YPD+F RE VA +I L ESR+Q
Sbjct: 39 RKNRRERTTYSRQQLEILETLFNETQYPDVFARERVADQIRLQESRIQ 86
>sp|P56672|OTP_DROME Homeobox protein orthopedia OS=Drosophila melanogaster GN=otp PE=2
SV=2
Length = 409
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 37/49 (75%)
Query: 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
+ Q+R RT FT AQL+ LE F KT YPDIFMREE+A++I L ESRVQ
Sbjct: 106 QQDQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQ 154
>sp|Q6SR68|OTP_HELTB Homeobox protein orthopedia OS=Heliocidaris tuberculata GN=Otp PE=2
SV=1
Length = 363
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
KQ+R RT FT AQL+ LE F KT YPDIFMREE+A+++ L ESRVQ +
Sbjct: 113 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVW 161
>sp|Q6SR69|OTP_HELER Homeobox protein orthopedia OS=Heliocidaris erythrogramma GN=Otp
PE=2 SV=1
Length = 363
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
KQ+R RT FT AQL+ LE F KT YPDIFMREE+A+++ L ESRVQ +
Sbjct: 113 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVW 161
>sp|O76971|OTP_PARLI Homeobox protein orthopedia OS=Paracentrotus lividus GN=OTP PE=2
SV=1
Length = 364
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
KQ+R RT FT AQL+ LE F KT YPDIFMREE+A+++ L ESRVQ
Sbjct: 115 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 161
>sp|Q7YTC2|OTP_SACKO Homeobox protein orthopedia OS=Saccoglossus kowalevskii GN=otp PE=2
SV=1
Length = 322
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
KQ+R RT FT AQL+ LE F KT YPDIFMREE+A+++ L ESRVQ +
Sbjct: 89 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVW 137
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
+K RR RTTFT QL LE F K+ YPD++ REE+A+K+NLPE RVQ
Sbjct: 526 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 573
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Query: 17 AFPSFGTSCGGGGAAMASYLKSAPYGVNGIGLSMDSLHSSLGY-IP-----SGNHRKQRR 70
+FP C GG S L+ +P G + SLH L +P + N K+RR
Sbjct: 102 SFPQLPLDCRGGPRDGPSNLQGSP------GPCLASLHLPLSPGLPDSMELAKNKSKKRR 155
Query: 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RTTF+ QL+ LE +F KT YPD++ RE++AL+ +L E+RVQ
Sbjct: 156 NRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RKQRR RTTFT QL+ LE F +T YPD+F REE+A+KI L E+R+Q
Sbjct: 83 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 50 MDSLHSSLGYIPSGNHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPE 109
+D S+ G P+ RKQRR RTTFT QL+ LE F KT YPD+F REE+A++++L E
Sbjct: 196 LDEHGSNAGDRPTK--RKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTE 253
Query: 110 SRVQGY 115
+RVQ +
Sbjct: 254 ARVQVW 259
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RKQRR RTTFT QL+ LE F KT YPD+F REE+A++++L E+RVQ
Sbjct: 330 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
RKQRR RTTFT QL+ LE F KT YPD+F REE+A++++L E+RVQ +
Sbjct: 328 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVW 377
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RKQRR RTTFT QL+ LE F KT YPD+F REE+A++++L E+RVQ
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQ 113
RKQRR RTTF+ +QLD LE F +T+YPDI+ REE+A + NL E+R+Q
Sbjct: 211 RKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 258
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
+K RR RTTFT QL LE F K+ YPD++ REE+A+K+NLPE RVQ +
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVW 184
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
RKQRR RTTFT QL+ LE F KT YPD+F REE+A++++L E+RVQ +
Sbjct: 213 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVW 262
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGY 115
+K RR RTTFT QL LE F K+ YPD++ REE+ALK+NLPE RVQ +
Sbjct: 104 KKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVW 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,008,620
Number of Sequences: 539616
Number of extensions: 2014047
Number of successful extensions: 5839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5075
Number of HSP's gapped (non-prelim): 748
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)