Query psy15107
Match_columns 135
No_of_seqs 186 out of 1468
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 20:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.9 4.6E-23 1.6E-27 132.0 5.7 65 64-128 13-77 (80)
2 2da4_A Hypothetical protein DK 99.9 7.4E-23 2.5E-27 131.0 5.0 70 64-133 4-77 (80)
3 2dmu_A Homeobox protein goosec 99.9 1.9E-22 6.7E-27 125.9 6.0 64 65-128 4-67 (70)
4 1nk2_P Homeobox protein VND; h 99.9 2.5E-22 8.4E-27 127.7 6.5 65 64-128 5-69 (77)
5 2dms_A Homeobox protein OTX2; 99.9 2.6E-22 9E-27 128.4 6.6 68 65-132 4-71 (80)
6 2da3_A Alpha-fetoprotein enhan 99.9 1.5E-22 5.2E-27 129.3 5.3 65 64-128 13-77 (80)
7 2kt0_A Nanog, homeobox protein 99.9 2E-22 6.8E-27 129.9 5.8 65 64-128 18-82 (84)
8 2cra_A Homeobox protein HOX-B1 99.9 8.7E-23 3E-27 127.5 3.8 64 65-128 4-67 (70)
9 2l7z_A Homeobox protein HOX-A1 99.9 2.1E-22 7.2E-27 126.8 5.5 69 65-133 4-72 (73)
10 2da2_A Alpha-fetoprotein enhan 99.9 1.5E-22 5E-27 126.4 4.5 66 64-129 3-68 (70)
11 2cue_A Paired box protein PAX6 99.9 3.9E-22 1.3E-26 127.6 6.3 64 65-128 4-67 (80)
12 1ig7_A Homeotic protein MSX-1; 99.9 2.3E-22 8E-27 121.1 4.9 58 69-126 1-58 (58)
13 2h1k_A IPF-1, pancreatic and d 99.9 2.4E-22 8.3E-27 123.1 4.9 61 67-127 2-62 (63)
14 2e1o_A Homeobox protein PRH; D 99.9 5.2E-22 1.8E-26 124.0 6.4 63 66-128 5-67 (70)
15 2da1_A Alpha-fetoprotein enhan 99.9 1.8E-22 6.1E-27 126.0 4.1 64 65-128 4-67 (70)
16 1wh5_A ZF-HD homeobox family p 99.9 1.6E-22 5.6E-27 129.6 3.9 62 64-125 13-78 (80)
17 3a01_A Homeodomain-containing 99.9 8.8E-22 3E-26 129.4 7.5 69 64-132 13-81 (93)
18 1zq3_P PRD-4, homeotic bicoid 99.9 5.1E-22 1.8E-26 123.4 5.9 65 68-132 2-66 (68)
19 2hdd_A Protein (engrailed home 99.9 2.5E-22 8.6E-27 122.2 4.1 58 68-125 3-60 (61)
20 2vi6_A Homeobox protein nanog; 99.9 1.1E-22 3.7E-27 124.3 2.5 61 67-127 2-62 (62)
21 2dmq_A LIM/homeobox protein LH 99.9 6.7E-22 2.3E-26 126.4 6.3 64 65-128 4-67 (80)
22 1puf_A HOX-1.7, homeobox prote 99.9 9.7E-22 3.3E-26 124.9 6.8 65 64-128 9-73 (77)
23 2djn_A Homeobox protein DLX-5; 99.9 1.8E-22 6.3E-27 126.1 3.3 64 65-128 4-67 (70)
24 1ahd_P Antennapedia protein mu 99.8 6.2E-22 2.1E-26 123.1 4.9 63 68-130 2-64 (68)
25 1fjl_A Paired protein; DNA-bin 99.8 8.5E-22 2.9E-26 126.3 5.4 64 65-128 15-78 (81)
26 1yz8_P Pituitary homeobox 2; D 99.8 4.2E-22 1.4E-26 123.7 3.8 65 67-131 2-66 (68)
27 1bw5_A ISL-1HD, insulin gene e 99.8 2.9E-22 9.9E-27 123.8 3.0 63 67-129 2-64 (66)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 1.4E-21 4.7E-26 121.5 6.0 63 68-130 2-64 (68)
29 1jgg_A Segmentation protein EV 99.8 7.3E-22 2.5E-26 119.8 4.6 58 69-126 2-59 (60)
30 1wh7_A ZF-HD homeobox family p 99.8 4.5E-22 1.5E-26 127.5 2.9 61 64-125 13-78 (80)
31 2m0c_A Homeobox protein arista 99.8 1.3E-21 4.5E-26 123.4 4.7 66 64-129 5-70 (75)
32 1b8i_A Ultrabithorax, protein 99.8 9.9E-22 3.4E-26 126.1 4.1 63 65-127 17-79 (81)
33 3rkq_A Homeobox protein NKX-2. 99.8 1.3E-21 4.5E-26 117.5 4.3 57 68-124 2-58 (58)
34 1akh_A Protein (mating-type pr 99.8 8E-22 2.8E-26 119.9 3.1 60 65-124 2-61 (61)
35 2r5y_A Homeotic protein sex co 99.8 1.3E-21 4.5E-26 127.3 4.3 63 65-127 25-87 (88)
36 1uhs_A HOP, homeodomain only p 99.8 4.2E-21 1.4E-25 120.5 6.2 64 69-132 2-66 (72)
37 2k40_A Homeobox expressed in E 99.8 1.9E-21 6.6E-26 120.4 4.6 61 69-129 2-62 (67)
38 2hi3_A Homeodomain-only protei 99.8 4.3E-21 1.5E-25 120.8 6.0 63 68-130 2-65 (73)
39 1b72_A Protein (homeobox prote 99.8 4.8E-21 1.6E-25 126.7 5.2 64 66-129 32-95 (97)
40 3a02_A Homeobox protein arista 99.8 2.4E-21 8.2E-26 117.5 3.4 57 71-127 2-58 (60)
41 2ecc_A Homeobox and leucine zi 99.8 5.3E-21 1.8E-25 121.1 5.1 58 71-128 6-63 (76)
42 3a03_A T-cell leukemia homeobo 99.8 4.4E-21 1.5E-25 114.9 4.5 54 73-126 2-55 (56)
43 1x2n_A Homeobox protein pknox1 99.8 1.4E-20 4.8E-25 118.3 6.3 64 65-128 4-70 (73)
44 2cuf_A FLJ21616 protein; homeo 99.8 1.1E-20 3.7E-25 124.5 6.0 66 64-129 3-83 (95)
45 2da5_A Zinc fingers and homeob 99.8 1.3E-20 4.3E-25 119.2 5.7 60 70-129 9-68 (75)
46 2ly9_A Zinc fingers and homeob 99.8 8.9E-21 3E-25 119.4 4.4 63 67-129 5-67 (74)
47 2dn0_A Zinc fingers and homeob 99.8 7.3E-21 2.5E-25 120.6 3.6 60 69-128 9-68 (76)
48 3nar_A ZHX1, zinc fingers and 99.8 8.3E-21 2.8E-25 125.4 3.9 64 65-128 22-85 (96)
49 2da6_A Hepatocyte nuclear fact 99.8 2.4E-20 8.1E-25 124.0 5.8 65 64-128 2-87 (102)
50 1puf_B PRE-B-cell leukemia tra 99.8 3.1E-20 1E-24 116.7 5.5 62 69-130 2-66 (73)
51 1wi3_A DNA-binding protein SAT 99.8 2.6E-20 9E-25 114.6 4.9 58 65-122 4-62 (71)
52 2dmn_A Homeobox protein TGIF2L 99.8 1E-19 3.4E-24 117.2 6.0 65 65-129 4-71 (83)
53 1k61_A Mating-type protein alp 99.8 4.5E-20 1.5E-24 111.8 3.9 55 72-126 2-59 (60)
54 1b72_B Protein (PBX1); homeodo 99.8 6.6E-20 2.3E-24 118.8 4.9 60 69-128 2-64 (87)
55 1du6_A PBX1, homeobox protein 99.8 1.6E-20 5.4E-25 115.2 1.6 58 68-125 3-63 (64)
56 1au7_A Protein PIT-1, GHF-1; c 99.8 2.6E-20 8.9E-25 131.6 2.8 64 64-127 83-146 (146)
57 2cqx_A LAG1 longevity assuranc 99.8 1.6E-20 5.5E-25 118.0 1.1 59 69-127 9-68 (72)
58 2dmp_A Zinc fingers and homeob 99.8 3E-19 1E-23 116.4 6.9 56 75-130 20-75 (89)
59 2ecb_A Zinc fingers and homeob 99.8 1E-19 3.4E-24 118.6 4.4 55 74-128 17-71 (89)
60 1lfb_A Liver transcription fac 99.8 3E-20 1E-24 123.4 1.7 65 64-128 5-90 (99)
61 1e3o_C Octamer-binding transcr 99.8 5.7E-20 1.9E-24 131.6 3.2 62 65-126 98-159 (160)
62 1mnm_C Protein (MAT alpha-2 tr 99.8 1.5E-19 5E-24 117.3 4.7 59 66-124 25-86 (87)
63 2xsd_C POU domain, class 3, tr 99.8 5.1E-20 1.7E-24 132.4 2.8 65 65-129 96-160 (164)
64 3d1n_I POU domain, class 6, tr 99.8 1.1E-19 3.8E-24 128.9 4.5 62 64-125 89-150 (151)
65 1le8_B Mating-type protein alp 99.8 1.3E-19 4.4E-24 116.7 3.8 60 69-128 3-65 (83)
66 2e19_A Transcription factor 8; 99.8 5.6E-20 1.9E-24 113.0 2.0 55 73-127 8-62 (64)
67 3nau_A Zinc fingers and homeob 99.8 1.9E-19 6.6E-24 110.6 4.2 52 76-127 12-63 (66)
68 2l9r_A Homeobox protein NKX-3. 99.8 9.3E-20 3.2E-24 113.6 2.4 56 73-128 9-64 (69)
69 1x2m_A LAG1 longevity assuranc 99.8 9.9E-20 3.4E-24 111.7 1.4 50 77-126 9-59 (64)
70 3l1p_A POU domain, class 5, tr 99.8 3.2E-19 1.1E-23 127.1 4.1 61 66-126 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.7 6.2E-19 2.1E-23 126.4 1.8 66 64-129 93-158 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 1.9E-17 6.6E-22 102.4 3.6 55 74-128 4-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.5E-17 5.3E-22 122.2 0.2 62 64-125 111-193 (194)
74 2da7_A Zinc finger homeobox pr 99.6 1.2E-16 4.2E-21 98.8 3.5 57 77-133 14-70 (71)
75 2h8r_A Hepatocyte nuclear fact 99.6 3.4E-16 1.1E-20 116.7 2.6 60 64-123 138-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.5 4.1E-15 1.4E-19 96.5 4.3 55 73-127 10-67 (89)
77 1mh3_A Maltose binding-A1 home 99.4 1.1E-14 3.8E-19 115.6 1.2 57 68-124 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 5.1E-10 1.7E-14 60.9 -0.3 20 110-129 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.4 0.0013 4.4E-08 40.2 1.7 41 79-119 17-57 (70)
80 2glo_A Brinker CG9653-PA; prot 89.2 0.35 1.2E-05 27.6 3.0 49 72-121 3-51 (59)
81 2elh_A CG11849-PA, LD40883P; s 87.8 1.1 3.7E-05 27.6 4.9 47 69-120 17-63 (87)
82 1hlv_A CENP-B, major centromer 81.4 1.5 5.3E-05 28.5 3.6 49 71-122 4-52 (131)
83 3hug_A RNA polymerase sigma fa 79.7 1.5 5.3E-05 26.9 3.0 47 75-126 38-84 (92)
84 2rgt_A Fusion of LIM/homeobox 74.9 0.047 1.6E-06 38.1 -5.8 30 66-95 134-163 (169)
85 1tc3_C Protein (TC3 transposas 74.8 1.8 6.3E-05 22.4 2.0 40 74-118 5-44 (51)
86 2o8x_A Probable RNA polymerase 72.4 2.2 7.5E-05 24.3 2.1 46 74-124 15-60 (70)
87 1jko_C HIN recombinase, DNA-in 72.4 0.98 3.3E-05 24.0 0.5 42 75-121 6-47 (52)
88 1p4w_A RCSB; solution structur 69.9 4.1 0.00014 25.8 3.1 43 72-120 32-74 (99)
89 3ulq_B Transcriptional regulat 69.2 4.3 0.00015 25.1 3.0 45 68-118 23-67 (90)
90 1ku3_A Sigma factor SIGA; heli 68.1 4.2 0.00014 23.7 2.7 50 74-124 10-59 (73)
91 1s7o_A Hypothetical UPF0122 pr 65.0 5.4 0.00019 25.8 3.0 48 74-126 22-69 (113)
92 3mzy_A RNA polymerase sigma-H 65.0 4.8 0.00016 26.3 2.8 47 74-126 109-155 (164)
93 3c57_A Two component transcrip 62.9 4.2 0.00015 25.2 2.1 44 73-122 26-69 (95)
94 1je8_A Nitrate/nitrite respons 61.8 6.7 0.00023 23.5 2.8 44 73-122 20-63 (82)
95 2jn6_A Protein CGL2762, transp 61.2 6.2 0.00021 24.2 2.7 43 73-119 4-47 (97)
96 1xsv_A Hypothetical UPF0122 pr 61.1 7.3 0.00025 25.0 3.1 48 74-126 25-72 (113)
97 1iuf_A Centromere ABP1 protein 60.6 18 0.00061 24.1 5.1 50 69-118 6-59 (144)
98 1or7_A Sigma-24, RNA polymeras 58.6 9.1 0.00031 25.9 3.4 49 75-128 141-189 (194)
99 1fse_A GERE; helix-turn-helix 57.4 9 0.00031 21.8 2.8 44 73-122 10-53 (74)
100 2p7v_B Sigma-70, RNA polymeras 56.9 4.4 0.00015 23.2 1.3 47 74-121 5-51 (68)
101 1rp3_A RNA polymerase sigma fa 55.5 9.4 0.00032 26.6 3.1 47 75-126 188-234 (239)
102 1tty_A Sigma-A, RNA polymerase 54.1 6.8 0.00023 23.7 1.9 48 74-122 18-65 (87)
103 1x3u_A Transcriptional regulat 52.3 9.7 0.00033 22.1 2.4 42 75-122 17-58 (79)
104 2rnj_A Response regulator prot 51.6 9.8 0.00033 23.1 2.4 44 73-122 28-71 (91)
105 2lv7_A Calcium-binding protein 47.6 26 0.00088 21.6 4.0 46 72-117 27-79 (100)
106 2rn7_A IS629 ORFA; helix, all 47.4 15 0.0005 22.9 2.8 46 73-118 5-53 (108)
107 2x48_A CAG38821; archeal virus 44.8 8.2 0.00028 20.9 1.1 36 77-117 18-53 (55)
108 2q0o_A Probable transcriptiona 44.1 17 0.0006 25.8 3.1 45 72-122 173-217 (236)
109 3i5g_B Myosin regulatory light 44.1 50 0.0017 21.6 5.3 41 71-111 6-51 (153)
110 1u78_A TC3 transposase, transp 43.7 14 0.00048 23.6 2.3 42 73-119 5-46 (141)
111 1l3l_A Transcriptional activat 41.6 22 0.00077 25.2 3.3 45 72-122 171-215 (234)
112 1pdn_C Protein (PRD paired); p 40.4 19 0.00065 22.3 2.5 42 74-120 17-58 (128)
113 2jpc_A SSRB; DNA binding prote 38.8 8.6 0.0003 21.1 0.6 25 98-122 16-40 (61)
114 2kvr_A Ubiquitin carboxyl-term 38.5 9.1 0.00031 25.6 0.7 23 98-120 72-94 (130)
115 3bd1_A CRO protein; transcript 36.0 7.5 0.00026 22.7 -0.0 23 98-120 14-36 (79)
116 1fi6_A EH domain protein REPS1 35.6 19 0.00066 21.5 1.9 43 74-116 2-49 (92)
117 3fmy_A HTH-type transcriptiona 35.2 29 0.00098 19.9 2.6 41 73-120 9-49 (73)
118 2qko_A Possible transcriptiona 34.8 20 0.00069 24.3 2.1 40 80-120 34-73 (215)
119 2q1z_A RPOE, ECF SIGE; ECF sig 34.4 6.4 0.00022 26.5 -0.6 27 99-125 155-181 (184)
120 2xi8_A Putative transcription 34.2 7.1 0.00024 21.5 -0.3 22 98-119 17-38 (66)
121 2q24_A Putative TETR family tr 33.1 11 0.00039 25.1 0.5 38 80-119 21-58 (194)
122 2r1j_L Repressor protein C2; p 33.1 7.7 0.00026 21.4 -0.3 23 98-120 21-43 (68)
123 1k78_A Paired box protein PAX5 32.7 29 0.00098 22.6 2.5 41 74-119 32-72 (149)
124 2pmy_A RAS and EF-hand domain- 32.4 15 0.0005 21.8 0.9 45 73-117 19-68 (91)
125 1c07_A Protein (epidermal grow 32.4 22 0.00075 21.5 1.7 42 75-116 4-50 (95)
126 1rzs_A Antirepressor, regulato 31.8 12 0.00041 21.1 0.4 19 98-116 13-31 (61)
127 1zug_A Phage 434 CRO protein; 31.0 8.5 0.00029 21.5 -0.4 23 98-120 19-41 (71)
128 3qp6_A CVIR transcriptional re 31.0 59 0.002 23.7 4.2 44 73-122 196-239 (265)
129 3dcf_A Transcriptional regulat 30.9 9.1 0.00031 25.8 -0.3 40 80-120 37-76 (218)
130 3bs3_A Putative DNA-binding pr 30.8 9.1 0.00031 21.8 -0.3 23 98-120 26-48 (76)
131 8tfv_A Protein (thanatin); bac 30.7 14 0.00049 16.4 0.4 13 109-121 3-15 (21)
132 3omt_A Uncharacterized protein 29.9 10 0.00036 21.5 -0.1 22 98-119 24-45 (73)
133 2hxo_A Putative TETR-family tr 29.7 33 0.0011 24.2 2.6 49 71-120 12-61 (237)
134 1j9i_A GPNU1 DBD;, terminase s 29.5 13 0.00046 21.3 0.3 21 98-118 5-25 (68)
135 2hin_A GP39, repressor protein 29.3 12 0.0004 22.3 0.0 21 98-118 13-33 (71)
136 3o9x_A Uncharacterized HTH-typ 29.3 37 0.0013 21.7 2.6 23 98-120 87-109 (133)
137 2lfw_A PHYR sigma-like domain; 29.3 20 0.00068 23.8 1.2 49 74-127 93-141 (157)
138 3t72_q RNA polymerase sigma fa 28.6 52 0.0018 20.5 3.1 50 74-124 19-68 (99)
139 3clo_A Transcriptional regulat 28.4 44 0.0015 24.1 3.1 44 73-122 196-239 (258)
140 1adr_A P22 C2 repressor; trans 28.3 10 0.00036 21.4 -0.3 23 98-120 21-43 (76)
141 3kz3_A Repressor protein CI; f 27.4 12 0.00041 21.8 -0.2 23 98-120 28-50 (80)
142 3c3w_A Two component transcrip 27.1 25 0.00087 24.3 1.5 44 73-122 148-191 (225)
143 2b5a_A C.BCLI; helix-turn-heli 27.1 11 0.00039 21.4 -0.3 22 98-119 26-47 (77)
144 1r69_A Repressor protein CI; g 27.1 11 0.00038 20.8 -0.3 23 98-120 17-39 (69)
145 3fiw_A Putative TETR-family tr 26.8 17 0.00057 25.4 0.5 50 70-120 20-70 (211)
146 2lhi_A Calmodulin, serine/thre 25.9 42 0.0014 22.5 2.4 39 72-110 2-45 (176)
147 3szt_A QCSR, quorum-sensing co 25.9 53 0.0018 23.4 3.1 41 74-120 175-215 (237)
148 2hxi_A Putative transcriptiona 25.7 23 0.00079 25.2 1.1 48 72-120 26-74 (241)
149 2k27_A Paired box protein PAX- 24.7 75 0.0026 20.8 3.6 48 73-120 82-136 (159)
150 2kpj_A SOS-response transcript 24.7 14 0.00046 22.3 -0.3 23 98-120 25-47 (94)
151 1y7y_A C.AHDI; helix-turn-heli 24.4 14 0.00047 20.8 -0.3 22 98-119 29-50 (74)
152 2a6c_A Helix-turn-helix motif; 24.2 15 0.00052 21.6 -0.1 23 98-120 34-56 (83)
153 3b7h_A Prophage LP1 protein 11 24.2 14 0.00047 21.0 -0.3 23 98-120 23-45 (78)
154 2qwt_A Transcriptional regulat 24.1 24 0.00081 23.7 0.9 39 80-120 19-57 (196)
155 3lph_A Protein REV; helix-loop 23.2 46 0.0016 19.9 1.9 17 80-96 18-34 (72)
156 2wiu_B HTH-type transcriptiona 23.2 18 0.00061 21.1 0.1 23 98-120 28-50 (88)
157 3i9v_2 NADH-quinone oxidoreduc 23.1 52 0.0018 23.0 2.5 34 79-112 27-60 (181)
158 3fia_A Intersectin-1; EH 1 dom 23.1 51 0.0017 21.5 2.3 45 71-115 23-72 (121)
159 1a04_A Nitrate/nitrite respons 22.9 46 0.0016 22.5 2.2 44 73-122 153-196 (215)
160 2jml_A DNA binding domain/tran 22.0 17 0.0006 21.5 -0.2 19 98-116 8-26 (81)
161 3o48_A Mitochondria fission 1 22.0 1.1E+02 0.0037 20.5 3.8 33 73-105 16-50 (134)
162 1l0o_C Sigma factor; bergerat 21.7 19 0.00066 24.9 0.0 43 75-122 199-241 (243)
163 2iai_A Putative transcriptiona 21.0 47 0.0016 22.7 2.0 39 80-119 36-74 (230)
164 3f6w_A XRE-family like protein 21.0 17 0.0006 21.0 -0.3 22 98-119 30-51 (83)
165 2ict_A Antitoxin HIGA; helix-t 20.7 19 0.00064 21.6 -0.2 23 98-120 24-46 (94)
166 2ef8_A C.ECOT38IS, putative tr 20.7 18 0.00063 20.8 -0.3 23 98-120 26-48 (84)
167 3plu_A Ubiquitin-like modifier 20.6 40 0.0014 21.2 1.3 25 98-122 48-72 (93)
168 2g7l_A TETR-family transcripti 20.6 30 0.001 24.7 0.8 48 72-120 16-64 (243)
169 3iz6_M 40S ribosomal protein S 20.0 67 0.0023 22.0 2.5 29 92-120 58-87 (152)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=131.96 Aligned_cols=65 Identities=28% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..++.++.|+.|+..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 45678899999999999999999999999999999999999999999999999999999987654
No 2
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=7.4e-23 Score=130.97 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=65.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCCC
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKT----RYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPES 133 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~----~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~~ 133 (135)
...+.++.|+.|+.+|+.+||.+|+.+ +||+..++++||.++||++.+|+|||||||+|+|+....+|..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~~~~p 77 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVSGP 77 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCCCCCC
Confidence 345678999999999999999999999 9999999999999999999999999999999999998887653
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=125.89 Aligned_cols=64 Identities=36% Similarity=0.453 Sum_probs=60.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+.+|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 3457889999999999999999999999999999999999999999999999999999998754
No 4
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.87 E-value=2.5e-22 Score=127.69 Aligned_cols=65 Identities=28% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..++.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+...
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 45667888999999999999999999999999999999999999999999999999999998765
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=2.6e-22 Score=128.37 Aligned_cols=68 Identities=63% Similarity=0.792 Sum_probs=63.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCC
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPE 132 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~ 132 (135)
..+.++.|+.|+.+|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+.......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 45678999999999999999999999999999999999999999999999999999999998875443
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=129.28 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
...+.++.|+.|+.+|+.+||..|..++||+..++++||.+|+|++.+|+|||||||+|+|+.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 35567889999999999999999999999999999999999999999999999999999998654
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=129.94 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=61.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
...+.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+.+.
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 45667899999999999999999999999999999999999999999999999999999998764
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=8.7e-23 Score=127.54 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=59.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 4567889999999999999999999999999999999999999999999999999999987654
No 9
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.86 E-value=2.1e-22 Score=126.82 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=63.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCCC
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPES 133 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~~ 133 (135)
..+.++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+....+.++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 72 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcccCCC
Confidence 345788999999999999999999999999999999999999999999999999999999988776553
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=126.42 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=61.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
...+.++.|+.|+.+|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...+
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 345678899999999999999999999999999999999999999999999999999999876543
No 11
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=3.9e-22 Score=127.63 Aligned_cols=64 Identities=38% Similarity=0.556 Sum_probs=60.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999999999999999999999999999999999998764
No 12
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=2.3e-22 Score=121.10 Aligned_cols=58 Identities=33% Similarity=0.386 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 69 RRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
++.|+.|+.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|+|++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999974
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.86 E-value=2.4e-22 Score=123.08 Aligned_cols=61 Identities=30% Similarity=0.261 Sum_probs=56.4
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 67 k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
+.++.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3678899999999999999999999999999999999999999999999999999999864
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=5.2e-22 Score=124.00 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=59.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 66 ~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
.+.++.|+.|+.+|+.+||..|..++||+..++++||..++|++.+|+|||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 346778999999999999999999999999999999999999999999999999999998765
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=126.02 Aligned_cols=64 Identities=25% Similarity=0.227 Sum_probs=60.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999998754
No 16
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.86 E-value=1.6e-22 Score=129.56 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=57.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGK----TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVA 125 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~ 125 (135)
...+.+|.||.|+.+|+.+||..|+. ++||+..++++||..|+|++.+|+|||||||+|.|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34567899999999999999999999 999999999999999999999999999999998653
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=8.8e-22 Score=129.41 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=62.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCC
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPE 132 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~ 132 (135)
...+.++.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+......+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHH
Confidence 445678899999999999999999999999999999999999999999999999999999998775543
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.86 E-value=5.1e-22 Score=123.40 Aligned_cols=65 Identities=26% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCC
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPE 132 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~ 132 (135)
.++.|+.|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+......+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 66 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKD 66 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccccc
Confidence 57889999999999999999999999999999999999999999999999999999998876544
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.85 E-value=2.5e-22 Score=122.22 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=53.1
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHH
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVA 125 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~ 125 (135)
.++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 20
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.85 E-value=1.1e-22 Score=124.26 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=53.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 67 k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
+.++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4678899999999999999999999999999999999999999999999999999998753
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-22 Score=126.36 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=60.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+.+|+.+||..|..++||+..++++||.+|+|++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999865
No 22
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=9.7e-22 Score=124.92 Aligned_cols=65 Identities=26% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..++.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+...
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999999999999999999999999999998764
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-22 Score=126.05 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+..|+.+||..|..++||+..++++||..++|++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4567889999999999999999999999999999999999999999999999999999887553
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.85 E-value=6.2e-22 Score=123.06 Aligned_cols=63 Identities=25% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCC
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINL 130 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~ 130 (135)
+++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 478899999999999999999999999999999999999999999999999999999987643
No 25
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.85 E-value=8.5e-22 Score=126.26 Aligned_cols=64 Identities=45% Similarity=0.623 Sum_probs=59.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
.++.++.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 5667889999999999999999999999999999999999999999999999999999998764
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.85 E-value=4.2e-22 Score=123.74 Aligned_cols=65 Identities=38% Similarity=0.471 Sum_probs=61.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCC
Q psy15107 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLP 131 (135)
Q Consensus 67 k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~ 131 (135)
+.++.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+....+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~~ 66 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFIV 66 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhccC
Confidence 46889999999999999999999999999999999999999999999999999999999887543
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=2.9e-22 Score=123.75 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=59.1
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 67 k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
+.++.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 64 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhhh
Confidence 467899999999999999999999999999999999999999999999999999999876653
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=1.4e-21 Score=121.47 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=59.8
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCC
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINL 130 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~ 130 (135)
.++.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 578899999999999999999999999999999999999999999999999999999987654
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=7.3e-22 Score=119.79 Aligned_cols=58 Identities=38% Similarity=0.402 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 69 RRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
++.|+.|+..|+..||..|..++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999974
No 30
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=4.5e-22 Score=127.48 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGK-----TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVA 125 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~ 125 (135)
...+++|.||.||.+|+.+|| .|.. ++||+..++++||.+|+|++.+|+|||||||+|.|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 455688999999999999999 7999 999999999999999999999999999999998653
No 31
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=123.41 Aligned_cols=66 Identities=41% Similarity=0.559 Sum_probs=61.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
..++.++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.+..
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 355678899999999999999999999999999999999999999999999999999999987653
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.84 E-value=9.9e-22 Score=126.08 Aligned_cols=63 Identities=25% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
..+.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345688999999999999999999999999999999999999999999999999999999764
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=117.54 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=54.7
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
+++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 477899999999999999999999999999999999999999999999999999975
No 34
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.84 E-value=8e-22 Score=119.87 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=48.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
..+.++.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788899999999999999999999999999999999999999999999999999865
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=1.3e-21 Score=127.25 Aligned_cols=63 Identities=25% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
..+.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345788899999999999999999999999999999999999999999999999999999764
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=4.2e-21 Score=120.45 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=59.0
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCC
Q psy15107 69 RRERTTFTRAQLDVLESLFGK-TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPE 132 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~ 132 (135)
.+.|+.|+..|+.+||..|.. ++||+..++++||..+||++.+|+|||||||+|+|+.....++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 66 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSE 66 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCCc
Confidence 467899999999999999996 9999999999999999999999999999999999998865443
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-21 Score=120.35 Aligned_cols=61 Identities=34% Similarity=0.433 Sum_probs=58.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 69 RRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
++.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6789999999999999999999999999999999999999999999999999999987654
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=4.3e-21 Score=120.77 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=58.5
Q ss_pred CCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCC
Q psy15107 68 QRRERTTFTRAQLDVLESLFGK-TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINL 130 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~ 130 (135)
.++.|+.|+..|+.+||..|.. ++||+..++++||..+||++.+|+|||||||+|+|+.....
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 3577899999999999999995 99999999999999999999999999999999999988643
No 39
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=4.8e-21 Score=126.70 Aligned_cols=64 Identities=25% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 66 ~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
.+.++.|+.|+..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+....
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4578889999999999999999999999999999999999999999999999999999998753
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=2.4e-21 Score=117.51 Aligned_cols=57 Identities=40% Similarity=0.562 Sum_probs=50.6
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 71 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999999999999999999999999999999999999999999865
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=5.3e-21 Score=121.07 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 71 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
.|+.||.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|.|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999999998765
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.82 E-value=4.4e-21 Score=114.89 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
|.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 43
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.4e-20 Score=118.29 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=59.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGK---TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+.++.|+.|+..|+.+||.+|.. ++||+..++++||..+||++.||+|||||||+|.|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 4567888999999999999999977 999999999999999999999999999999999998654
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.1e-20 Score=124.53 Aligned_cols=66 Identities=27% Similarity=0.294 Sum_probs=62.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------CCcCCccccchhhhHHHHHHhc
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKIN---------------LPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~---------------l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
...+.++.|+.|+..|+.+||..|+.++||+..++++||..|+ |++.+|++||||||+|+|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999999999999999999999999999 9999999999999999999886
Q ss_pred C
Q psy15107 129 N 129 (135)
Q Consensus 129 ~ 129 (135)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=119.24 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=56.0
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 70 RERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 70 r~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
++|+.||.+|+.+||..|..++||+..++.+||..++|++.+|+|||||||+|+|+....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 445679999999999999999999999999999999999999999999999999998763
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=8.9e-21 Score=119.45 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=58.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 67 KQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 67 k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
..++.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 357789999999999999999999999999999999999999999999999999999987653
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-21 Score=120.55 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 69 RRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
.+.|+.||.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 445889999999999999999999999999999999999999999999999999998765
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.81 E-value=8.3e-21 Score=125.36 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=56.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
....++.|+.|+..|+.+||..|..++||+..++++||.+|+|++.+|+|||||||+|+|+.+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 3446678999999999999999999999999999999999999999999999999999998653
No 49
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=124.01 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHc---------------------CCCcCCccccchhhhHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKI---------------------NLPESRVQGYPDIFMRE 122 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l---------------------~l~~~~V~vWFqNRR~k 122 (135)
..+++||.|+.|++.|+.+||+.|+.++||+..+|++||..| .|++.+|+|||||||+|
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 346688999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHhc
Q psy15107 123 EVALKI 128 (135)
Q Consensus 123 ~k~~~~ 128 (135)
+|+...
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 998764
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.81 E-value=3.1e-20 Score=116.73 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCC
Q psy15107 69 RRERTTFTRAQLDVLESLF---GKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINL 130 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~ 130 (135)
++.|+.|+..|+.+||.+| ..++||+..++..||..+||++.+|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6788999999999999999 8999999999999999999999999999999999999876643
No 51
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=2.6e-20 Score=114.59 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=55.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGK-TRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
.++.+|.||.|+.+|+.+|+..|+. ++||+...|+.||.++||++++|+|||||||--
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 4567899999999999999999999 999999999999999999999999999999964
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=117.22 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGK---TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
..+.++.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.||+|||||||+|.|+....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3457888999999999999999987 5999999999999999999999999999999999887653
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.79 E-value=4.5e-20 Score=111.78 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=52.8
Q ss_pred CCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 72 RTTFTRAQLDVLESLFGK---TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
|+.|+.+|+.+||.+|.. ++||+..++++||.++||++.+|++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999864
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.79 E-value=6.6e-20 Score=118.77 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=56.5
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 69 RRERTTFTRAQLDVLESLF---GKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
|+.|+.|+..|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6789999999999999999 89999999999999999999999999999999999998754
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.6e-20 Score=115.18 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHH
Q psy15107 68 QRRERTTFTRAQLDVLESLF---GKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVA 125 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~ 125 (135)
.++.|+.|+..|+.+||.+| ..++||+..++++||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 57888999999999999999 89999999999999999999999999999999999764
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.79 E-value=2.6e-20 Score=131.58 Aligned_cols=64 Identities=27% Similarity=0.285 Sum_probs=56.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
..++++|.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 4566788999999999999999999999999999999999999999999999999999998753
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1.6e-20 Score=117.98 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 69 RRERTTFTRAQLDVLESLF-GKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
.+.|..++.+|+.+||..| ..++||+..++++||.+|||++.+|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4455667889999999999 9999999999999999999999999999999999988654
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=116.41 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCC
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINL 130 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~ 130 (135)
||.+|+.+||..|..++||+..++++||..++|++.+|+|||||||+|+|+.+...
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 89999999999999999999999999999999999999999999999999887654
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1e-19 Score=118.61 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
.||.+|+.+||..|..++||+..++++||..|||+++||+|||||||+|+|+.+.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999988654
No 60
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.78 E-value=3e-20 Score=123.40 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=53.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------cC---CCcCCccccchhhhHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALK------------------IN---LPESRVQGYPDIFMRE 122 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~------------------l~---l~~~~V~vWFqNRR~k 122 (135)
..++.++.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|+|||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 35678899999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHHhc
Q psy15107 123 EVALKI 128 (135)
Q Consensus 123 ~k~~~~ 128 (135)
+|+...
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 876543
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.78 E-value=5.7e-20 Score=131.59 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
..++||.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999875
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.78 E-value=1.5e-19 Score=117.29 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=55.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 66 RKQRRERTTFTRAQLDVLESLFGK---TRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 66 ~k~rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
.++++.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345667899999999999999999 99999999999999999999999999999999986
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.78 E-value=5.1e-20 Score=132.39 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 65 HRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 65 ~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
..+++|.|+.|+..|+.+||..|..++||+..++++||..++|++.+|+|||||||+|+|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45678899999999999999999999999999999999999999999999999999999987653
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=128.90 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=58.6
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVA 125 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~ 125 (135)
...+++|.|+.|+..|+.+||..|..++||+..++.+||.++||++.+|+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567889999999999999999999999999999999999999999999999999999885
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.77 E-value=1.3e-19 Score=116.66 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 69 RRERTTFTRAQLDVLESLFGK---TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
++.|+.|+..|+.+||.+|.. ++||+..++.+||..+||++.||+|||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 445666999999999999999 999999999999999999999999999999999988654
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-20 Score=113.01 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=50.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
..++.+|+..||..|..++||+..++++||..+||++.+|+|||||||+|+++.+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 3457899999999999999999999999999999999999999999999987643
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=110.56 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 76 TRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 76 t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
+.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|.|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 7899999999999999999999999999999999999999999999999764
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=9.3e-20 Score=113.57 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=52.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
..+|..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.+.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999887654
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=9.9e-20 Score=111.68 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=45.9
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 77 RAQLDVLESLF-GKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 77 ~~ql~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
..|+.+||+.| ..++||+..++.+||.+|+|+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45799999999 679999999999999999999999999999999997743
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.76 E-value=3.2e-19 Score=127.07 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 66 ~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
.+.+|.|+.|+..|+..||..|..++||+..++.+||..++|++.+|+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4677889999999999999999999999999999999999999999999999999999974
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.73 E-value=6.2e-19 Score=126.44 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcC
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~ 129 (135)
...+.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|.|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 345678899999999999999999999999999999999999999999999999999998876554
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.9e-17 Score=102.45 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 74 TFTRAQLDVLESLFG---KTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~---~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
.|+.+|+.+|+.+|. .++||+..++++||..+||++.||++||||||+|.|+...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 9999999999999999999999999999999999886543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=1.5e-17 Score=122.23 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=53.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------------CCcCCccccchhhhHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKIN---------------------LPESRVQGYPDIFMRE 122 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~V~vWFqNRR~k 122 (135)
..++.||.|+.|+..|+.+||+.|..++||+..+|++||..|+ |++.+|+|||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4567889999999999999999999999999999999999999 9999999999999998
Q ss_pred HHH
Q psy15107 123 EVA 125 (135)
Q Consensus 123 ~k~ 125 (135)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 763
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=98.77 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhcCCCCC
Q psy15107 77 RAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKINLPES 133 (135)
Q Consensus 77 ~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~~~~~~ 133 (135)
.+|+..||.+|..+++|+..++..||..+||++++|+|||||||+...-.+...|.+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~~~~~~~p~~ 70 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSRSGPSS 70 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSSSCCSC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCCCCCCC
Confidence 578999999999999999999999999999999999999999998766555555543
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.58 E-value=3.4e-16 Score=116.66 Aligned_cols=60 Identities=25% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------------CCcCCccccchhhhHH
Q psy15107 64 NHRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKIN---------------------LPESRVQGYPDIFMRE 122 (135)
Q Consensus 64 ~~~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~V~vWFqNRR~k 122 (135)
..++.||.|+.|++.|+.+||+.|..++||+..+|++||..++ |++.+|++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4677899999999999999999999999999999999999988 8999999999999986
Q ss_pred H
Q psy15107 123 E 123 (135)
Q Consensus 123 ~ 123 (135)
+
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.54 E-value=4.1e-15 Score=96.48 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=51.4
Q ss_pred CcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 73 TTFTRAQLDVLESLFGK---TRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
..|+.+++.+|+.+|.. ++||+..++++||.++||++.||++||+|+|+|.++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 46899999999999987 89999999999999999999999999999999998654
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.45 E-value=1.1e-14 Score=115.56 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
.++.++.++..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|.|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345678899999999999999999999999999999999999999999999998854
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.79 E-value=5.1e-10 Score=60.92 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=17.8
Q ss_pred CCccccchhhhHHHHHHhcC
Q psy15107 110 SRVQGYPDIFMREEVALKIN 129 (135)
Q Consensus 110 ~~V~vWFqNRR~k~k~~~~~ 129 (135)
+||+|||||||+|.|+.+.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999988764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.0013 Score=40.20 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhh
Q psy15107 79 QLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 79 ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNR 119 (135)
-.+.|+++|...+.+.......|+.+..|+..||+-||-.|
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999654
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.15 E-value=0.35 Score=27.61 Aligned_cols=49 Identities=14% Similarity=0.015 Sum_probs=32.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhH
Q psy15107 72 RTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMR 121 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~ 121 (135)
|..|+.++.......+... ........++|.++|++...|..|....+.
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~ 51 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQCESN 51 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTTHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468888876664444433 221112568999999999999999765443
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=87.84 E-value=1.1 Score=27.55 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 69 RRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
++.+..|+.++....-..+... . ...++|..+|++...|..|....+
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4456678888865554555432 2 255789999999999999985544
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=81.40 E-value=1.5 Score=28.46 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=36.7
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 71 ERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 71 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
.|..||.++...+-..+..+.... ..++|..+|++...|..|..++..-
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 567899999877766665554443 2368999999999999999776553
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=79.72 E-value=1.5 Score=26.93 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
++..+..+|.-.|.... ...++|..+|++...|+.+...-|.|-|+.
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 56666666666443322 457899999999999999887766666554
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=74.94 E-value=0.047 Score=38.15 Aligned_cols=30 Identities=7% Similarity=-0.109 Sum_probs=21.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCH
Q psy15107 66 RKQRRERTTFTRAQLDVLESLFGKTRYPDI 95 (135)
Q Consensus 66 ~k~rr~Rt~~t~~ql~~Le~~F~~~~~p~~ 95 (135)
.+.+|.||.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 567899999999999999999999999864
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=74.80 E-value=1.8 Score=22.44 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchh
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDI 118 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqN 118 (135)
.++.++...+...+... + ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46676665555555433 2 3567899999999999999754
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=72.39 E-value=2.2 Score=24.33 Aligned_cols=46 Identities=11% Similarity=-0.047 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
.+++.+..+|.-.|... ....++|..+|++...|+.+...-+.+-+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36788888888765433 23568999999999999988766555544
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.37 E-value=0.98 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhH
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMR 121 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~ 121 (135)
++.++...+...+... . ...+||..+|++...|..|+....-
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 4555555544445433 2 3567899999999999999875443
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=69.85 E-value=4.1 Score=25.75 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=32.9
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 72 RTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
...+++.+..+|.-.++-. .-.++|..|++++..|+.+..+-+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4558999999997765322 247899999999999998876533
No 89
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=69.19 E-value=4.3 Score=25.12 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchh
Q psy15107 68 QRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDI 118 (135)
Q Consensus 68 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqN 118 (135)
.......+|..+..+|.-.++-. ...++|..|++++..|+....+
T Consensus 23 ~~~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 23 SQKEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp ------CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 33445569999999998776322 3678999999999999876554
No 90
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=68.14 E-value=4.2 Score=23.69 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
.+++.+..+|.-.|...-. ....-.++|..+|++...|+.+...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788889999888741100 0113468999999999999998765555544
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=65.03 E-value=5.4 Score=25.78 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
.+++.+..++.-.|.... ...++|..+|++...|+.|...-+.+-++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467888888877654432 357899999999999999988766665543
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=64.98 E-value=4.8 Score=26.35 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
.+++.+..+|. .|. ......++|..+|++...|+.+...-+.+-|+.
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35566666666 332 223567899999999999999887766665544
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=62.90 E-value=4.2 Score=25.18 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=32.7
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..++..+..+|.-.++-. ...++|..+|++...|+.+..+-+.|
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 358899999998864332 24689999999999999877654444
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=61.78 E-value=6.7 Score=23.51 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=32.4
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..++..+..+|.-.++. ....++|..++++...|+.+..+-+.|
T Consensus 20 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999885422 246689999999999998876544333
No 95
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=61.24 E-value=6.2 Score=24.20 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=29.6
Q ss_pred CcCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHcCCCcCCccccchhh
Q psy15107 73 TTFTRAQLDVLESLFGKT-RYPDIFMREEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~-~~p~~~~r~~La~~l~l~~~~V~vWFqNR 119 (135)
..|+.++....-..+... .. ...++|..+|++...|..|....
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 458887765554444322 22 35688999999999999997543
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=61.08 E-value=7.3 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
.+++.+..+|.-.|.... .-.++|..+|++...|+.+...-|.+-+..
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 366777777776653332 457899999999999999887766665543
No 97
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=60.64 E-value=18 Score=24.06 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHH-HHHc--CCCcCCccccchh
Q psy15107 69 RRERTTFTRAQLDVLESLF-GKTRYPDIFMREEV-ALKI--NLPESRVQGYPDI 118 (135)
Q Consensus 69 rr~Rt~~t~~ql~~Le~~F-~~~~~p~~~~r~~L-a~~l--~l~~~~V~vWFqN 118 (135)
++.|..+|.+|...+-..+ +.++..+..+.... ..++ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678889999999998888 66666655433332 2267 7888889989865
No 98
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=58.55 E-value=9.1 Score=25.92 Aligned_cols=49 Identities=10% Similarity=-0.126 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHhc
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALKI 128 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~~ 128 (135)
+++.+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+-|+...
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444322 235689999999999999998877777665543
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.40 E-value=9 Score=21.80 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..+++.+..+|.-.++. + ...++|..+|++...|+.+...-+.|
T Consensus 10 ~~L~~~e~~il~~~~~g--~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFELLVQD--K----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHHHTTT--C----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--C----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45889999999885322 2 35689999999999998877654433
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.91 E-value=4.4 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMR 121 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~ 121 (135)
.+++.+..+|.-.|....+ ....-.++|..+|++...|+.+...-+.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3678888888888721100 1123568999999999999887654333
No 101
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=55.49 E-value=9.4 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHH
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVAL 126 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~ 126 (135)
+++.+..+|.-.|... ....++|..+|++...|+.+...-+.+-|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666666655332 2457899999999999999887766666654
No 102
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=54.08 E-value=6.8 Score=23.70 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
.+++.+..+|.-.|..... ......++|..+|++...|+.+...-+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678888888887741100 01235688999999999999876554444
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.28 E-value=9.7 Score=22.06 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
+++.+..+|.-.++. ....++|..++++...|+.+..+-+.|
T Consensus 17 L~~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVVAG------LPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHTTT------CCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 677777777764322 134689999999999998876543333
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=51.64 E-value=9.8 Score=23.07 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=32.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..++..+..+|.-.++-. ...++|..+|++...|+.+..+-+.|
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 458888999887754322 24578999999999999877654443
No 105
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=47.63 E-value=26 Score=21.61 Aligned_cols=46 Identities=7% Similarity=0.032 Sum_probs=35.2
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcC--CCcCCccccch
Q psy15107 72 RTTFTRAQLDVLESLFGK-----TRYPDIFMREEVALKIN--LPESRVQGYPD 117 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~--l~~~~V~vWFq 117 (135)
...++.+++..|...|.. +-+.+..+...+...+| +++..|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356889999999999854 46899999888888876 45566766664
No 106
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=47.41 E-value=15 Score=22.86 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=30.2
Q ss_pred CcCCHHHHHHHHHhh-hhc-CCCC-HHHHHHHHHHcCCCcCCccccchh
Q psy15107 73 TTFTRAQLDVLESLF-GKT-RYPD-IFMREEVALKINLPESRVQGYPDI 118 (135)
Q Consensus 73 t~~t~~ql~~Le~~F-~~~-~~p~-~~~r~~La~~l~l~~~~V~vWFqN 118 (135)
..|+.++....-..+ ... .+.+ .....++|..+|++...|..|...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 458887765444433 322 1222 245678999999999999999754
No 107
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=44.79 E-value=8.2 Score=20.87 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccch
Q psy15107 77 RAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPD 117 (135)
Q Consensus 77 ~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFq 117 (135)
.++...+...+... + ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555555433 2 356889999999999988864
No 108
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=44.11 E-value=17 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=33.1
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 72 RTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
...+|+.+.++|.-..+-. .-+++|..|++++..|+....+-+.|
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3458888888886654222 34689999999999999887665544
No 109
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=44.08 E-value=50 Score=21.57 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=32.1
Q ss_pred CCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCcCC
Q psy15107 71 ERTTFTRAQLDVLESLFGK-----TRYPDIFMREEVALKINLPESR 111 (135)
Q Consensus 71 ~Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~ 111 (135)
.|..+|.+|+..|...|.. .-+.+..+...+...+|.....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 3456999999999999954 4578888888888888866543
No 110
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=43.65 E-value=14 Score=23.63 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=30.8
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhh
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNR 119 (135)
..++.++...+...+.... ...++|..+|++...|..|++..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 3577777766666665432 35678999999999999998653
No 111
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=41.58 E-value=22 Score=25.21 Aligned_cols=45 Identities=13% Similarity=-0.061 Sum_probs=33.2
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 72 RTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
...+|+.+.++|.-..+ . ..-.++|..|++++..|+...++-+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g-----~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-G-----KTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T-----CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34689999998866432 2 245689999999999999877665444
No 112
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=40.42 E-value=19 Score=22.34 Aligned_cols=42 Identities=2% Similarity=-0.025 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
.++.++...+-..+... + ...++|..++++...|..|+...+
T Consensus 17 ~~s~~~r~~i~~~~~~g-~----s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-I----RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47777766665656432 2 245789999999999999986543
No 113
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.77 E-value=8.6 Score=21.14 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCcCCccccchhhhHH
Q psy15107 98 REEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..++|..+++++..|+.+..+-+.|
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3588999999999999877654443
No 114
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=38.48 E-value=9.1 Score=25.56 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999986544
No 115
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=35.99 E-value=7.5 Score=22.72 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||+.+|++...|..|...++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999987643
No 116
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=35.64 E-value=19 Score=21.55 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCcCCccccc
Q psy15107 74 TFTRAQLDVLESLFGK-----TRYPDIFMREEVALKINLPESRVQGYP 116 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWF 116 (135)
.++.++...+...|.. .-+.+..+...+...++++...++..|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577788888888754 345667777776677777766655443
No 117
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=35.23 E-value=29 Score=19.88 Aligned_cols=41 Identities=7% Similarity=-0.055 Sum_probs=30.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..++.+.+..+...... ...+||..+|++...|..|=..++
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 35788888777664432 256889999999999999976643
No 118
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=34.81 E-value=20 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=29.3
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 80 LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 80 l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
+......|.+..|- ......||+..|++...+..+|.++-
T Consensus 34 l~aa~~lf~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 34 VNAAIEVLAREGAR-GLTFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHHHTCTT-TCCHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHHHhChh-hccHHHHHHHcCCCcchHHHhCCCHH
Confidence 34445557766654 34466889999999999999998753
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.36 E-value=6.4 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHcCCCcCCccccchhhhHHHHH
Q psy15107 99 EEVALKINLPESRVQGYPDIFMREEVA 125 (135)
Q Consensus 99 ~~La~~l~l~~~~V~vWFqNRR~k~k~ 125 (135)
.++|..+|+++..|+.+...-|.+-|+
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888899999999988776666554
No 120
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=34.19 E-value=7.1 Score=21.45 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcCCccccchhh
Q psy15107 98 REEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNR 119 (135)
..+||..+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999998764
No 121
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=33.12 E-value=11 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=31.2
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhh
Q psy15107 80 LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 80 l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNR 119 (135)
+..-...|...-| . .....||+..|++...|..+|.++
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 4455566888877 5 688899999999999999999875
No 122
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=33.07 E-value=7.7 Score=21.44 Aligned_cols=23 Identities=0% Similarity=0.069 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 123
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.73 E-value=29 Score=22.63 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhh
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNR 119 (135)
.++.++....-..+... + ...++|..+|++...|..|+...
T Consensus 32 ~~s~e~r~~iv~~~~~G-~----s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQG-V----RPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 57777766666666432 2 24578999999999999998654
No 124
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=32.39 E-value=15 Score=21.83 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=34.9
Q ss_pred CcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCcCCccccch
Q psy15107 73 TTFTRAQLDVLESLFGK-----TRYPDIFMREEVALKINLPESRVQGYPD 117 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWFq 117 (135)
..++.++...|...|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 45788889999998854 4578888888888888888777776664
No 125
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.37 E-value=22 Score=21.48 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCcCCccccc
Q psy15107 75 FTRAQLDVLESLFGK-----TRYPDIFMREEVALKINLPESRVQGYP 116 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWF 116 (135)
++.++...|+..|.. .-+.+..+...+...+++++..|+.+|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 566777888887743 346777777777777777776666544
No 126
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.81 E-value=12 Score=21.09 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHHHHcCCCcCCccccc
Q psy15107 98 REEVALKINLPESRVQGYP 116 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWF 116 (135)
..+||+.+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5689999999999999998
No 127
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.01 E-value=8.5 Score=21.52 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 128
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=31.01 E-value=59 Score=23.70 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=32.4
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..+|..+.++|.-..+-. .-.++|..|++++..|+....|=+.|
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468888888887664322 35789999999999999877664444
No 129
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=30.93 E-value=9.1 Score=25.82 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 80 LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 80 l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
+......|....|- ......||+..|++...+..+|.++-
T Consensus 37 l~aa~~l~~~~G~~-~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 37 IKVATELFREKGYY-ATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHTCTT-TCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCcc-cCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33445557666654 33456789999999999999998753
No 130
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.84 E-value=9.1 Score=21.75 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987643
No 131
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=30.72 E-value=14 Score=16.40 Aligned_cols=13 Identities=8% Similarity=-0.401 Sum_probs=10.3
Q ss_pred cCCccccchhhhH
Q psy15107 109 ESRVQGYPDIFMR 121 (135)
Q Consensus 109 ~~~V~vWFqNRR~ 121 (135)
+..|-+-++|||.
T Consensus 3 kkpvpiiycnrrt 15 (21)
T 8tfv_A 3 KKPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCCEEEEGGG
T ss_pred CCcccEEEEcCcc
Confidence 4567888999986
No 132
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=29.89 E-value=10 Score=21.54 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcCCccccchhh
Q psy15107 98 REEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNR 119 (135)
..+||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5689999999999999998764
No 133
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=29.74 E-value=33 Score=24.25 Aligned_cols=49 Identities=6% Similarity=-0.042 Sum_probs=30.8
Q ss_pred CCCcCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 71 ERTTFTRAQ-LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 71 ~Rt~~t~~q-l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
.+...+.++ +..-...|...-|- ......||+.+|++...+...|.|+-
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGER-GLTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTT-TCCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHCCChHHHHHhcCCHH
Confidence 334455543 33444556666543 33456789999999999999998853
No 134
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=29.45 E-value=13 Score=21.26 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCcCCccccchh
Q psy15107 98 REEVALKINLPESRVQGYPDI 118 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqN 118 (135)
..++|..||++...|+.|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999999754
No 135
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=29.33 E-value=12 Score=22.32 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCcCCccccchh
Q psy15107 98 REEVALKINLPESRVQGYPDI 118 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqN 118 (135)
..+||+.||++..-|--|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999754
No 136
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=29.31 E-value=37 Score=21.70 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|-..++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999987644
No 137
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=29.26 E-value=20 Score=23.76 Aligned_cols=49 Identities=18% Similarity=0.053 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHHHHh
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEVALK 127 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k~~~ 127 (135)
.+++.+..+|.-.|. ....-.++|..+|+++..|+.....-|.+-|+..
T Consensus 93 ~Lp~~~r~vl~L~~~-----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALLLTAM-----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHTTTSS-----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 366667666654432 2234678999999999999998877666655443
No 138
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=28.62 E-value=52 Score=20.51 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHHHH
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMREEV 124 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k~k 124 (135)
.+++.+..++.-.|....+ ....-.++|..+|++...|+.....-..+-|
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3567777777777642110 1124678999999999999887655444443
No 139
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.37 E-value=44 Score=24.09 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=33.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..+++.+..+|.-.++.- .-.++|..||+++..|++...+-|.|
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEK 239 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468899988888764222 35689999999999999877654444
No 140
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.33 E-value=10 Score=21.44 Aligned_cols=23 Identities=0% Similarity=0.069 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 141
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=27.37 E-value=12 Score=21.79 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46899999999999999987654
No 142
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=27.15 E-value=25 Score=24.35 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=32.5
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..+|..+.++|+-..+- ...++||..+++++..|++...+=|.|
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35888888888766543 235789999999999998877665443
No 143
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=27.09 E-value=11 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcCCccccchhh
Q psy15107 98 REEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNR 119 (135)
..+||..+|++...|..|...+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 5679999999999999998764
No 144
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.06 E-value=11 Score=20.84 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999988876543
No 145
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=26.83 E-value=17 Score=25.35 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=30.9
Q ss_pred CCCCcCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 70 RERTTFTRAQ-LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 70 r~Rt~~t~~q-l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
+.|...+.++ +..-...|...-|- ......||..+|++...|...|.++-
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~ 70 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKR 70 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 3344455543 33444556655543 23456789999999999999998754
No 146
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.94 E-value=42 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.1
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCcC
Q psy15107 72 RTTFTRAQLDVLESLFGK-----TRYPDIFMREEVALKINLPES 110 (135)
Q Consensus 72 Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~ 110 (135)
++.+|.+|+..|...|.. +-+.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 356888999999998854 457888888777777776544
No 147
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=25.91 E-value=53 Score=23.38 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 74 TFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 74 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
.+|+.+.++|.-..+- ..-.++|..|++++..|+.-..+=+
T Consensus 175 ~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4566666655443211 1247889999999999887655533
No 148
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=25.71 E-value=23 Score=25.23 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=31.1
Q ss_pred CCcCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 72 RTTFTRAQ-LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 72 Rt~~t~~q-l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
|...+.++ +..-...|...-|- ......||+++|++...|..+|.|+-
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 34455543 33444556665543 33456789999999999999998853
No 149
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.74 E-value=75 Score=20.82 Aligned_cols=48 Identities=4% Similarity=-0.100 Sum_probs=29.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHH-HHHH------cCCCcCCccccchhhh
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREE-VALK------INLPESRVQGYPDIFM 120 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~-La~~------l~l~~~~V~vWFqNRR 120 (135)
..++.++...+......++..+..+... |... ..++...|..|+...+
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 4567777777777777666666554433 3222 1366777888875433
No 150
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=24.67 E-value=14 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|...++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 56799999999999999987643
No 151
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.41 E-value=14 Score=20.77 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcCCccccchhh
Q psy15107 98 REEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNR 119 (135)
..+||..+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 5679999999999999888764
No 152
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=24.24 E-value=15 Score=21.62 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 153
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=24.22 E-value=14 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987755
No 154
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.10 E-value=24 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=30.5
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 80 LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 80 l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
+..-...|.+..| . .....||++.|++...|..+|.++-
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3344555777777 5 6788899999999999999998753
No 155
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=23.24 E-value=46 Score=19.93 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=12.1
Q ss_pred HHHHHHhhhhcCCCCHH
Q psy15107 80 LDVLESLFGKTRYPDIF 96 (135)
Q Consensus 80 l~~Le~~F~~~~~p~~~ 96 (135)
+.++.-.|+.++||+..
T Consensus 18 vRiIkiLyQSNP~P~p~ 34 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPE 34 (72)
T ss_dssp HHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHccCCCCCCC
Confidence 44556668889998764
No 156
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=23.24 E-value=18 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|...++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 157
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=23.14 E-value=52 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCc
Q psy15107 79 QLDVLESLFGKTRYPDIFMREEVALKINLPESRV 112 (135)
Q Consensus 79 ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 112 (135)
-+.+|...=+...|.+......+|..|+|+..+|
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 3444544444457999999999999999998776
No 158
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=23.14 E-value=51 Score=21.55 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=32.2
Q ss_pred CCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHcCCCcCCcc-cc
Q psy15107 71 ERTTFTRAQLDVLESLFGK----TRYPDIFMREEVALKINLPESRVQ-GY 115 (135)
Q Consensus 71 ~Rt~~t~~ql~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~V~-vW 115 (135)
....++.++...++..|.. +-+.+..+...+-.+.+|+...+. ||
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 3466899999999999965 335666776666667788876643 55
No 159
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=22.91 E-value=46 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=33.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 73 TTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
..+|..+.++|+-..+.. ...+||..+++++..|++...+=|.|
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKK 196 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 358999988887765432 36789999999999998876665544
No 160
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=22.02 E-value=17 Score=21.54 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCcCCccccc
Q psy15107 98 REEVALKINLPESRVQGYP 116 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWF 116 (135)
..++|+.+|++...|+.|-
T Consensus 8 i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWE 26 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999998883
No 161
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.98 E-value=1.1e+02 Score=20.47 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=27.2
Q ss_pred CcCCHHHHHHHHHhhhh--cCCCCHHHHHHHHHHc
Q psy15107 73 TTFTRAQLDVLESLFGK--TRYPDIFMREEVALKI 105 (135)
Q Consensus 73 t~~t~~ql~~Le~~F~~--~~~p~~~~r~~La~~l 105 (135)
..++++++..|++.|.. ...|+...+-++|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 45889999999999966 6788998888887555
No 162
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.68 E-value=19 Score=24.89 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhhHH
Q psy15107 75 FTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 75 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
+++.+..+|.-.| .......++|..+|++...|+.+...-+.+
T Consensus 199 L~~~~r~vl~l~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRY-----YKDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHH-----hcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4444444444433 344567789999999999999887654433
No 163
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.04 E-value=47 Score=22.73 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhh
Q psy15107 80 LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 80 l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNR 119 (135)
+......|....|-. .....||+..|++...|...|.++
T Consensus 36 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 36 LSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCH
Confidence 555566677766543 345678999999999999999875
No 164
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=21.01 E-value=17 Score=21.01 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCcCCccccchhh
Q psy15107 98 REEVALKINLPESRVQGYPDIF 119 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNR 119 (135)
..+||..+|++...|..|-.++
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4689999999999999888765
No 165
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=20.73 E-value=19 Score=21.58 Aligned_cols=23 Identities=13% Similarity=-0.024 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999987643
No 166
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.71 E-value=18 Score=20.81 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcCCccccchhhh
Q psy15107 98 REEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR 120 (135)
..+||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 167
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=20.59 E-value=40 Score=21.18 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCcCCccccchhhhHH
Q psy15107 98 REEVALKINLPESRVQGYPDIFMRE 122 (135)
Q Consensus 98 r~~La~~l~l~~~~V~vWFqNRR~k 122 (135)
++.|+.+.|++..+.+.+|..+--+
T Consensus 48 K~~I~~k~Gip~~qQrLif~Gk~Lk 72 (93)
T 3plu_A 48 KKVLSLQIGTQPNKIVLQKGGSVLK 72 (93)
T ss_dssp HHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHhCCCHHHEEEEeCCEEcc
Confidence 5678999999999999999876543
No 168
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.57 E-value=30 Score=24.66 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCcCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHcCCCcCCccccchhhh
Q psy15107 72 RTTFTRAQ-LDVLESLFGKTRYPDIFMREEVALKINLPESRVQGYPDIFM 120 (135)
Q Consensus 72 Rt~~t~~q-l~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNRR 120 (135)
|...+.++ +..-...|...-|-. .....||+++|++...|...|.|+-
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~ 64 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHH
Confidence 34455543 334445566665533 3456789999999999999998854
No 169
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.04 E-value=67 Score=22.01 Aligned_cols=29 Identities=3% Similarity=-0.189 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHcC-CCcCCccccchhhh
Q psy15107 92 YPDIFMREEVALKIN-LPESRVQGYPDIFM 120 (135)
Q Consensus 92 ~p~~~~r~~La~~l~-l~~~~V~vWFqNRR 120 (135)
.++..+.+.|...+. ...-.|..||-||+
T Consensus 58 ~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 58 ELSAEEMDRLMAVVHNPRQFKVPDWFLNRK 87 (152)
T ss_dssp TSCHHHHHHHHHHHHSCSSCCCCCCSCSCC
T ss_pred cCCHHHHHHHHHHHHhhcccCcchhhhhhh
Confidence 455555555555542 12234778999986
Done!