BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1511
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
EMR + V +WPVGLVGGL+ E P VQDG+V+GF++ W P RP+P+DMAGFA+ L L+
Sbjct: 152 EMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLLD 211
Query: 62 NENVKFSFDVQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQK 121
N +F +G+ ES++LS L ++LEP A NCT+V VWHTRT P E LQ+
Sbjct: 212 KPNAQFDSTAPRGHLESSLLSH-LVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQR 270
Query: 122 NKKPASDRGIEV 133
+ SD IEV
Sbjct: 271 QGR-GSDPAIEV 281
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
EMR + V +WPVGLVGGL+ E P VQDG+V+GF++ W P RP+P+DMAGFA+ L L+
Sbjct: 132 EMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLLD 191
Query: 62 NENVKFSFDVQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQK 121
N +F +G+ ES++LS L ++LEP A NCT+V VWHTRT P E LQ+
Sbjct: 192 KPNAQFDSTAPRGHLESSLLSH-LVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQR 250
Query: 122 NKKPASDRGIEV 133
+ SD IEV
Sbjct: 251 QGR-GSDPAIEV 261
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
Length = 246
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
EMR +KV +WPVGLVGG + E+P+V++GKV+G+ + W RP+ IDMAGFA++L ++
Sbjct: 120 EMRTTRKVSVWPVGLVGGRRYERPLVENGKVVGWYTGWRADRPFAIDMAGFAVSLQVILS 179
Query: 62 NENVKF-SFDVQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRT 108
N F Q G QES L K +++ +ELEP A NCTKV VWHTRT
Sbjct: 180 NPKAVFKRRGSQPGMQESDFL-KQITTVEELEPKANNCTKVLVWHTRT 226
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 85/134 (63%), Gaps = 8/134 (5%)
Query: 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQD-GKVIGFNSMWAPQRPYPIDMAGFAINLDLMK 60
EMR ++V +WPV VGGL+ E P V GKV+ + +++ P RP+ IDMAGFA+NL L+
Sbjct: 126 EMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFDPHRPFAIDMAGFAVNLRLIL 185
Query: 61 KNENVKFSFD-VQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVL 119
+ F V+ GYQES++L + L + +LEP A NCTK+ VWHTRT P V++
Sbjct: 186 QRSQAYFKLRGVKGGYQESSLLRE-LVTLNDLEPKAANCTKILVWHTRTEKP-----VLV 239
Query: 120 QKNKKPASDRGIEV 133
+ KK +D +E+
Sbjct: 240 NEGKKGFTDPSVEI 253
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 63 ENVKFSFDVQKGYQESAILSKVLSSAQEL-EPLAENCTKV 101
EN+ F + K + E I+ + SSA+EL PLAE C +
Sbjct: 13 ENLYFQGHMTKSHSEEVIVPEFNSSAKELPRPLAEKCPSI 52
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 24 KPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKKNENVKFSFDV 71
+P+ G+V NS Q+P I++ FA +LD++ E ++FS+D+
Sbjct: 425 RPISDPGEVT-LNSADPFQQPN-INLNFFANDLDIIAMREGIRFSYDL 470
>pdb|4AAY|B Chain B, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|D Chain D, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|F Chain F, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|H Chain H, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 175
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 19 GLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKKNENVKFS-FDVQKGYQE 77
G +VE V DG ++GF+++ P + +P+ + + D N FS FD +KG Q+
Sbjct: 83 GTRVEGGVGPDGDIVGFSTI-CPHKGFPL-----SYSADNKTFNCPGHFSVFDPEKGGQQ 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,492
Number of Sequences: 62578
Number of extensions: 150318
Number of successful extensions: 357
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 11
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)