Query psy1511
Match_columns 133
No_of_seqs 105 out of 237
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:52:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cu0_A Galactosylgalactosylxyl 100.0 8.8E-58 3E-62 374.9 6.6 130 2-133 152-281 (281)
2 2d0j_A Galactosylgalactosylxyl 100.0 2.5E-54 8.4E-59 349.4 6.2 126 2-133 120-246 (246)
3 1v84_A Galactosylgalactosylxyl 100.0 2.2E-53 7.4E-58 345.0 5.5 126 2-133 126-253 (253)
4 3iys_A Major capsid protein VP 36.1 48 0.0016 27.6 4.8 71 24-104 242-325 (343)
5 1l1j_A Heat shock protease HTR 24.2 64 0.0022 24.4 3.4 35 24-60 185-220 (239)
6 1c3k_A Agglutinin; beta prism, 22.6 54 0.0019 23.1 2.6 37 13-54 109-145 (147)
7 1ouw_A Lectin, agglutinin; bet 22.2 76 0.0026 22.5 3.3 39 13-55 112-150 (152)
8 3lgi_A Protease DEGS; stress-s 19.8 95 0.0033 23.0 3.6 37 24-60 178-217 (237)
9 3mit_A Lectin; all beta sheet 19.7 66 0.0022 22.6 2.5 37 13-54 103-139 (141)
10 1sva_1 Simian virus 40; virus 17.5 25 0.00084 29.5 -0.3 52 24-85 251-309 (361)
No 1
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=8.8e-58 Score=374.93 Aligned_cols=130 Identities=50% Similarity=0.934 Sum_probs=127.8
Q ss_pred cccceeEEeeeeceeecceeeeceeEeCCeEEEEecccCCCCCCCcccceeeeeeccccccccccccccccCCchhhHHH
Q psy1511 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKKNENVKFSFDVQKGYQESAIL 81 (133)
Q Consensus 2 EmR~~k~vgvWPVG~vg~~~vEgPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~n~~lL~~~p~~~f~~~~~~G~~Es~fL 81 (133)
|||+||+|||||||++|++.||||+|++|+|+|||+.|.++|+|||||||||||+++||++|++.|++++++|||||+||
T Consensus 152 emR~ik~vgvWPVGlvgg~~vEgPvc~~gkVvGw~t~w~~~R~fpiDMAGFA~N~~lL~~~p~a~f~~~~~~G~qEs~fL 231 (281)
T 3cu0_A 152 EMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLL 231 (281)
T ss_dssp HHTSCSSEEECCEEEETTEEEEEEEEETTEEEEEECCSSTTCSSCCCGGGEEEEHHHHHHCTTCCCCTTSCTTCHHHHHH
T ss_pred HhhhcceEeEEEeeccccceeEEEEEeCCEEeeeeccCCCCCCCccccceeEeehhhhhcCCcccccCCCCCcchhhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccceecCCCCceEEEEeeecCCCCCCChhhhhcCCCCCCCCCccC
Q psy1511 82 SKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQKNKKPASDRGIEV 133 (133)
Q Consensus 82 ~~L~~~~~~lEpl~~~c~~VlVWHtrte~~~~~~~~~~~~~~~~~~~~~iev 133 (133)
++|+ +.++|||+|+||++||||||||++|++++|++++++|+. ||+.|||
T Consensus 232 ~~lv-~~~~lEp~~~~c~~VlVWHtrte~p~l~~e~~~~~~g~~-~~~~~e~ 281 (281)
T 3cu0_A 232 SHLV-DPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRG-SDPAIEV 281 (281)
T ss_dssp TTTC-CGGGCEECHHHHTCCCEECCCBCCCCCHHHHHHHTTTCC-CCTTSCC
T ss_pred HHhc-cHhhcEecCCCCCEEEEEecccCCCccCcHHHHHHhCCC-CCCCCcC
Confidence 9995 899999999999999999999999999999999999999 9999997
No 2
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-54 Score=349.39 Aligned_cols=126 Identities=47% Similarity=0.839 Sum_probs=120.4
Q ss_pred cccceeEEeeeeceeecceeeeceeEeCCeEEEEecccCCCCCCCcccceeeeeeccccccccccccc-cccCCchhhHH
Q psy1511 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKKNENVKFSF-DVQKGYQESAI 80 (133)
Q Consensus 2 EmR~~k~vgvWPVG~vg~~~vEgPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~n~~lL~~~p~~~f~~-~~~~G~~Es~f 80 (133)
|||+||+||+||||++|++.+|||+|++|||+|||+.|.++|+|||||||||||+++||++|++.|.. .+++|+|||+|
T Consensus 120 emR~i~~vgvWPVglvg~~~~EgPv~~~gkVvGw~t~w~~~R~fpiDmAGFA~N~~lll~~p~a~~~~~~~~~g~~Es~f 199 (246)
T 2d0j_A 120 EMRTTRKVSVWPVGLVGGRRYERPLVENGKVVGWYTGWRADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDF 199 (246)
T ss_dssp HHTTCSSEEECCEEEETTEEEEEEEEETTEEEEEECSSCTTSTTCCCGGGEEEEHHHHHHCTTCCCCTTSSSGGGHHHHH
T ss_pred HHhhhceeeEEEEEeecCcceecceeeCCEecceecccCCCCcCcccceeeEeehhhhhcCcccccccCCCCCCchhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999899999974 68899999999
Q ss_pred HHHhcCCcccceecCCCCceEEEEeeecCCCCCCChhhhhcCCCCCCCCCccC
Q psy1511 81 LSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQKNKKPASDRGIEV 133 (133)
Q Consensus 81 L~~L~~~~~~lEpl~~~c~~VlVWHtrte~~~~~~~~~~~~~~~~~~~~~iev 133 (133)
|++|+ +.++|||+|+||++||||||||++|++.+|+++++ +|+.|||
T Consensus 200 L~~l~-~~~~lEp~~~~c~~VlvWhtrte~~~l~~e~~~~~-----~~~~~~~ 246 (246)
T 2d0j_A 200 LKQIT-TVEELEPKANNCTKVLVWHTRTEKVNLANEPKYHL-----DTVKIEV 246 (246)
T ss_dssp HHTTC-CGGGCEECHHHHTCCCEECCCBCCCCCTTCCSSSC-----CSSCCCC
T ss_pred HHHhc-cHhhceeccCCCCEEEEEeccccCcccccccccCC-----CCCceeC
Confidence 99997 88999999999999999999999999999998776 7889997
No 3
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=2.2e-53 Score=345.02 Aligned_cols=126 Identities=44% Similarity=0.860 Sum_probs=118.7
Q ss_pred cccceeEEeeeeceeecceeeeceeEe-CCeEEEEecccCCCCCCCcccceeeeeecccccccccccccc-ccCCchhhH
Q psy1511 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQ-DGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKKNENVKFSFD-VQKGYQESA 79 (133)
Q Consensus 2 EmR~~k~vgvWPVG~vg~~~vEgPvc~-~g~Vvgw~~~~~~~R~f~iDmAGFA~n~~lL~~~p~~~f~~~-~~~G~~Es~ 79 (133)
|||+||+|||||||++|++.+|||+|+ +|+|+|||+.|.++|+|||||||||||+++||++|++.|+.+ +++|||||+
T Consensus 126 emR~i~~vgvWPVglvg~~~~EgPv~~~~gkVvGw~~~w~~~R~fpiDmAGFA~N~~lll~~p~a~~~~~~~~~g~~Es~ 205 (253)
T 1v84_A 126 EMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESS 205 (253)
T ss_dssp HHHTCSSEEECCEESCTTSSEEEEEECTTSCEEEEECSSCTTSTTCCCGGGEEEEHHHHHHSTTCCCCSSSSCTTCHHHH
T ss_pred HHhccCeeEEEEEEeecCcceecCeECCCCCEeeeecccCCCCCccceeeeeEEEehhhhhCCCceeccccCCCcchhhH
Confidence 899999999999999999999999999 799999999999999999999999999999998999999865 678999999
Q ss_pred HHHHhcCCcccceecCCCCceEEEEeeecCCCCCCChhhhhcCCCCCCCCCccC
Q psy1511 80 ILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQKNKKPASDRGIEV 133 (133)
Q Consensus 80 fL~~L~~~~~~lEpl~~~c~~VlVWHtrte~~~~~~~~~~~~~~~~~~~~~iev 133 (133)
||++|+ +.++|||+|+||++||||||||++|++.+|++. .- +|+.|||
T Consensus 206 fL~~l~-~~~~lEp~~~~C~~VlvWHtrte~p~~~~e~~~----~~-~~~~~e~ 253 (253)
T 1v84_A 206 LLRELV-TLNDLEPKAANCTKILVWHTRTEKPVLVNEGKK----GF-TDPSVEI 253 (253)
T ss_dssp HHHHHC-CGGGEEECHHHHTSCCEECCCBCCCCCGGGTTT----CS-SCTTSCC
T ss_pred HHHhhh-hHhhcEecCCCCCEEEEEecccCCccccccccc----cc-CCCCccC
Confidence 999997 889999999999999999999999999999743 23 8999997
No 4
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=36.11 E-value=48 Score=27.58 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=42.1
Q ss_pred ceeEeCCeEEEEecccCCCCCCCcccceeeeee--cccccccccccc-----ccccCCchhhHHHHHhcC------Cccc
Q psy1511 24 KPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINL--DLMKKNENVKFS-----FDVQKGYQESAILSKVLS------SAQE 90 (133)
Q Consensus 24 gPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~n~--~lL~~~p~~~f~-----~~~~~G~~Es~fL~~L~~------~~~~ 90 (133)
||.|..+.+- - -..||+||..|. +..|.-=-|+|. +.++.-|.-+.+|.+|-- +...
T Consensus 242 GpLCkgd~Ly--l--------s~aDi~G~~~~~~~~~~~rGLpRyF~vtlRKR~VKNPYpv~~Ll~slf~~~~p~v~GQp 311 (343)
T 3iys_A 242 GPLCKGDGLF--L--------SAADVAGTYVDQRGRQYWRGLPRYFSIQLRKRNVRNPYPVSGLLNSLFNDLMPRMTGQS 311 (343)
T ss_pred cccccCCcEE--E--------EeeeecceeeccCCcEEeecCCceeEEEEEeeeccCCccHHHHHHHHhcccCCcccCcc
Confidence 7777754332 1 157899998874 244433334554 346667999988888842 3345
Q ss_pred ceecCCCCceEEEE
Q psy1511 91 LEPLAENCTKVYVW 104 (133)
Q Consensus 91 lEpl~~~c~~VlVW 104 (133)
||+...--.+|-+.
T Consensus 312 m~g~~~QVeEVrvy 325 (343)
T 3iys_A 312 MQGSDAQVEEVRVY 325 (343)
T ss_pred ccCCCCceEEEEEe
Confidence 55544555666554
No 5
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=24.15 E-value=64 Score=24.37 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=22.0
Q ss_pred ceeEe-CCeEEEEecccCCCCCCCcccceeeeeecccc
Q psy1511 24 KPVVQ-DGKVIGFNSMWAPQRPYPIDMAGFAINLDLMK 60 (133)
Q Consensus 24 gPvc~-~g~Vvgw~~~~~~~R~f~iDmAGFA~n~~lL~ 60 (133)
||+++ +|+|+|-++.-.... ...--|||+-++.+.
T Consensus 185 GPLv~~~G~vvGI~s~~~~~~--~~~g~~faIP~~~~~ 220 (239)
T 1l1j_A 185 GPLLNIHGEVIGINTAIVNPQ--EAVNLGFAIPINTVK 220 (239)
T ss_dssp SEEECSSSEEEEEECCCSCCC--SCCSCEEEEEHHHHH
T ss_pred HHhccCCCeEEEEEeeeecCC--CcCceEEEEEHHHHH
Confidence 68876 589999887543210 112347888877665
No 6
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A*
Probab=22.62 E-value=54 Score=23.08 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=26.0
Q ss_pred eceeecceeeeceeEeCCeEEEEecccCCCCCCCcccceeee
Q psy1511 13 PVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAI 54 (133)
Q Consensus 13 PVG~vg~~~vEgPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~ 54 (133)
|.|...+..++-|+ ++++|+|||-.... -||--||-+
T Consensus 109 ~fG~~~g~~f~~~~-~g~~ivGF~Gr~g~----~ld~iGv~~ 145 (147)
T 1c3k_A 109 PFGTVASSSFSLPL-TKGKFAGFFGNSGD----VLDSIGGVV 145 (147)
T ss_dssp EEECCCSEEEEEEC-SSSEEEEEEEEESS----SEEEEEEEE
T ss_pred CCcCCCCcEEEEeC-CCCEEEEEEEECCC----eEEEEEEEE
Confidence 56777777777788 77999999865421 367666544
No 7
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1
Probab=22.16 E-value=76 Score=22.47 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=26.5
Q ss_pred eceeecceeeeceeEeCCeEEEEecccCCCCCCCcccceeeee
Q psy1511 13 PVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAIN 55 (133)
Q Consensus 13 PVG~vg~~~vEgPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~n 55 (133)
|.|...+..++-|+-++++|+|||-... .-||--||-+.
T Consensus 112 ~fG~~~G~~F~~~~~~g~~IvGF~Grag----~~ldaiGvy~~ 150 (152)
T 1ouw_A 112 PYGQKVGTPFSSANVVGNEIVGFLGRSG----YYVDAIGTYNR 150 (152)
T ss_dssp EEECSCSEEEECCCC--CEEEEEEEEES----SSEEEEEEEEE
T ss_pred CCcCCCCcEEEEecCCCCEEEEEEEECC----CeEEEEEEEEe
Confidence 5677777777777767799999996542 15777777664
No 8
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=19.79 E-value=95 Score=22.97 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=22.2
Q ss_pred ceeEe-CCeEEEEecccCCCCC--CCcccceeeeeecccc
Q psy1511 24 KPVVQ-DGKVIGFNSMWAPQRP--YPIDMAGFAINLDLMK 60 (133)
Q Consensus 24 gPvc~-~g~Vvgw~~~~~~~R~--f~iDmAGFA~n~~lL~ 60 (133)
||+++ +|+|+|-++.--.... -...--|||+-++.+.
T Consensus 178 GPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~ 217 (237)
T 3lgi_A 178 GALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLAT 217 (237)
T ss_dssp CEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHH
T ss_pred HHeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHH
Confidence 68887 5999998864322111 0122347888777665
No 9
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A*
Probab=19.66 E-value=66 Score=22.61 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=26.5
Q ss_pred eceeecceeeeceeEeCCeEEEEecccCCCCCCCcccceeee
Q psy1511 13 PVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAI 54 (133)
Q Consensus 13 PVG~vg~~~vEgPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~ 54 (133)
|.|...+..++-|+ ++++|+|||-... .-||--||-|
T Consensus 103 ~~G~~~G~~f~~~~-~~~~ivGF~Gr~g----~~ld~iG~y~ 139 (141)
T 3mit_A 103 PFGNTGGTPFSLPI-AAGKISGFFGRGG----DFIDAIGVYL 139 (141)
T ss_dssp EECSCCCEEEEEEE-EESEEEEEEEEES----SSEEEEEEEE
T ss_pred CcccCCCcEEEEeC-CCCEEEEEEEEcC----CeeEEEEEEE
Confidence 57777778777788 6799999986542 2577666654
No 10
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus; 3.10A {Simian virus 40} SCOP: b.121.6.1
Probab=17.48 E-value=25 Score=29.50 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=31.0
Q ss_pred ceeEeCCeEEEEecccCCCCCCCcccceeeeeec--ccccccccccc-----ccccCCchhhHHHHHhc
Q psy1511 24 KPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLD--LMKKNENVKFS-----FDVQKGYQESAILSKVL 85 (133)
Q Consensus 24 gPvc~~g~Vvgw~~~~~~~R~f~iDmAGFA~n~~--lL~~~p~~~f~-----~~~~~G~~Es~fL~~L~ 85 (133)
||.|..+.+- - -..||.||..|.+ ..|.-=-|+|. +.++.-|.-+.+|.+|-
T Consensus 251 GpLCkgd~Ly--l--------s~aDi~G~~~~~~~~~~~rGLpRyF~vtlRKR~VKNPYpVs~Ll~~lf 309 (361)
T 1sva_1 251 GPLCKADSLY--V--------SAVDICGLFTNTSGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLI 309 (361)
T ss_dssp CCBCSSSEEE--E--------EEEEECEEEEBTTSCEEEECCCEEEEEEEEEEEECCSSCSCSSSCCCS
T ss_pred cccccCCcEE--E--------EeeeecceEeccCCceeecCCCceeEEEEeeeeccCCccHHHHHHHHh
Confidence 7888765432 1 1568888877443 55644445554 23555677777777764
Done!