RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1511
(133 letters)
>gnl|CDD|132995 cd00218, GlcAT-I, Beta1,3-glucuronyltransferase I (GlcAT-I) is
involved in the initial steps of proteoglycan synthesis.
Beta1,3-glucuronyltransferase I (GlcAT-I) domain;
GlcAT-I is a Key enzyme involved in the initial steps of
proteoglycan synthesis. GlcAT-I catalyzes the transfer
of a glucuronic acid moiety from the uridine
diphosphate-glucuronic acid (UDP-GlcUA) to the common
linkage region of trisaccharide
Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The
enzyme has two subdomains that bind the donor and
acceptor substrate separately. The active site is
located at the cleft between both subdomains in which
the trisaccharide molecule is oriented perpendicular to
the UDP. This family has been classified as
Glycosyltransferase family 43 (GT-43).
Length = 223
Score = 165 bits (419), Expect = 1e-52
Identities = 62/107 (57%), Positives = 83/107 (77%)
Query: 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
EMRKIK+VG+WPVGLVGGL+VE PV ++GKV+G+++ W P+RP+PIDMAGFA N L+
Sbjct: 115 EMRKIKRVGVWPVGLVGGLRVEGPVCENGKVVGWHTAWKPERPFPIDMAGFAFNSKLLWD 174
Query: 62 NENVKFSFDVQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRT 108
F + ++GYQES+ L +++ +ELEPLA NC+KV VWHTRT
Sbjct: 175 PPRAVFPYSAKRGYQESSFLEQLVLDRKELEPLANNCSKVLVWHTRT 221
>gnl|CDD|217513 pfam03360, Glyco_transf_43, Glycosyltransferase family 43.
Length = 206
Score = 160 bits (407), Expect = 4e-51
Identities = 64/108 (59%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 2 EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
EMR +KKVG+WPVGLVGGL+VE PVV +GKV+G++++W P+RP+PIDMAGFA+NL L+
Sbjct: 97 EMRNVKKVGVWPVGLVGGLRVEGPVVNNGKVVGWHTVWKPKRPFPIDMAGFAVNLKLILD 156
Query: 62 NENVKFSFDVQK-GYQESAILSKVLSSAQELEPLAENCTKVYVWHTRT 108
N F F + GYQES+ L ++ +LEPLA NCTK+ VWHTRT
Sbjct: 157 RPNAVFGFKCLRGGYQESSFLEQLGLDLNDLEPLANNCTKILVWHTRT 204
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups.
Length = 346
Score = 38.4 bits (89), Expect = 4e-04
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 2 EMRKIKKVGIWPVGLVGGLK----VEKPVVQDGKVIGFN----SMWAPQRPYPIDMAGFA 53
E+R I+ G WP+ L+ + +E PV +VIG++ + RP PI ++ FA
Sbjct: 222 EIRDIEVFGTWPMALLSANRNKVIIEGPVCDSSQVIGWHLKKMNNETETRP-PIHISSFA 280
Query: 54 INLDLMKKNENVKFSFDVQKGYQESAILSK--VLSSAQELEPL-AENCTKVYVW 104
N ++ E VQ Q S K L +L+ + E+C+K+ +W
Sbjct: 281 FNSSILWDPERWGRPSSVQGTSQNSIKFVKQVALEDETKLKGIPPEDCSKIMLW 334
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated.
Length = 870
Score = 30.0 bits (68), Expect = 0.42
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 77 ESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQKNKK 124
ES +LSK L SAQ+ KV ++ F Y+ VL K +K
Sbjct: 658 ESKLLSKSLDSAQK---------KVEEYYYDQRKQLFEYDQVLNKQRK 696
>gnl|CDD|115061 pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT). This
family consists of several bacterial L-rhamnose-proton
symport protein (RhaT) sequences.
Length = 344
Score = 28.8 bits (64), Expect = 0.72
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 10 GIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFA-INLD-----LMK-KN 62
GI+ G+ + KP+ + +G + ++ Y I M G A INL L K KN
Sbjct: 182 GIFSAGMSFAMDAAKPMHEAAAALGIDPLYVALPSYVIIMGGGAIINLGFCFIRLAKLKN 241
Query: 63 ENVKFSFDVQKGYQESAILSKVLSSA 88
++K F + K I+S +L SA
Sbjct: 242 LSIKADFSLAK----PLIISNILFSA 263
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 27.8 bits (62), Expect = 1.8
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 54 INLDLMKKNENVKFSFDVQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHT 106
IN DL K K V++ S++ EL + E+ +VY
Sbjct: 28 INGDLNKSGSVEKIRIHVERRIAVFPEGSRI--KLDELPKILEDRGEVYFLKG 78
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional.
Length = 607
Score = 27.6 bits (62), Expect = 2.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 14 VGLVGGLKVE--KPVVQDGKVIGFNSMWAPQRPYPID 48
G V G + P+ ++G+VIG+ +WA + I
Sbjct: 148 GGQVRGGILNSMIPIERNGEVIGY--IWANELTEDIR 182
>gnl|CDD|183212 PRK11579, PRK11579, putative oxidoreductase; Provisional.
Length = 346
Score = 27.8 bits (62), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 85 LSSAQELEPLAENCTKVY-VWHTRTTDPTF 113
LS A+EL+ LA++ +V V+H R D F
Sbjct: 101 LSQARELDALAKSAGRVLSVFHNRRWDSDF 130
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form
(CCALD), the milder adult form, adrenomyeloneuropathy
(AMN), and variants without neurologic involvement
(i.e. asymptomatic).
Length = 166
Score = 27.1 bits (61), Expect = 2.6
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 10 GIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPY 45
G+WP G G ++ P G + ++ PQRPY
Sbjct: 49 GLWPWG--SG-RIGMPE-------GEDLLFLPQRPY 74
>gnl|CDD|226494 COG4006, COG4006, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 278
Score = 26.0 bits (57), Expect = 7.1
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 39 WAPQRPYPIDMAGFAINLDLMKKNENVKFSFDVQKGYQESAILSKVLSSAQELEPLAENC 98
R + + K V ++ SA L+ + SA+ +
Sbjct: 27 ADRARMDDEECGRRLSRGSELWK---VLEKLVSYAPFRASAELNTLFISAERKDRSVSEI 83
Query: 99 TKVYVWHTRTTDPTFPYEVV 118
+ ++ T T + EVV
Sbjct: 84 DEAILYSTDTANGRLSAEVV 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.403
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,604,010
Number of extensions: 550945
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 18
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)