RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1511
         (133 letters)



>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase
           3; glcat-I, glycosyltransferase, heparan sulfate
           biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo
           sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
          Length = 281

 Score =  156 bits (395), Expect = 1e-48
 Identities = 65/132 (49%), Positives = 88/132 (66%), Gaps = 2/132 (1%)

Query: 2   EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
           EMR  + V +WPVGLVGGL+ E P VQDG+V+GF++ W P RP+P+DMAGFA+ L L+  
Sbjct: 152 EMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLLD 211

Query: 62  NENVKFSFDVQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQK 121
             N +F     +G+ ES++LS ++   ++LEP A NCT+V VWHTRT  P    E  LQ+
Sbjct: 212 KPNAQFDSTAPRGHLESSLLSHLV-DPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQR 270

Query: 122 NKKPASDRGIEV 133
             +  SD  IEV
Sbjct: 271 QGRG-SDPAIEV 281


>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase
           2; rossmann-like fold, glucuronyltransferase; 2.00A
           {Homo sapiens}
          Length = 246

 Score =  147 bits (371), Expect = 2e-45
 Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 7/133 (5%)

Query: 2   EMRKIKKVGIWPVGLVGGLKVEKPVVQDGKVIGFNSMWAPQRPYPIDMAGFAINLDLMKK 61
           EMR  +KV +WPVGLVGG + E+P+V++GKV+G+ + W   RP+ IDMAGFA++L ++  
Sbjct: 120 EMRTTRKVSVWPVGLVGGRRYERPLVENGKVVGWYTGWRADRPFAIDMAGFAVSLQVILS 179

Query: 62  NENVKFSFD-VQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVLQ 120
           N    F     Q G QES  L ++ +  +ELEP A NCTKV VWHTRT       E    
Sbjct: 180 NPKAVFKRRGSQPGMQESDFLKQITT-VEELEPKANNCTKVLVWHTRTEKVNLANE---- 234

Query: 121 KNKKPASDRGIEV 133
             K       IEV
Sbjct: 235 -PKYHLDTVKIEV 246


>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase
           1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET:
           GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7
           PDB: 1v83_A* 1v82_A*
          Length = 253

 Score =  140 bits (354), Expect = 7e-43
 Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 8/134 (5%)

Query: 2   EMRKIKKVGIWPVGLVGGLKVEKPVVQD-GKVIGFNSMWAPQRPYPIDMAGFAINLDLMK 60
           EMR  ++V +WPV  VGGL+ E P V   GKV+ + +++ P RP+ IDMAGFA+NL L+ 
Sbjct: 126 EMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFDPHRPFAIDMAGFAVNLRLIL 185

Query: 61  KNENVKFSFD-VQKGYQESAILSKVLSSAQELEPLAENCTKVYVWHTRTTDPTFPYEVVL 119
           +     F    V+ GYQES++L ++++   +LEP A NCTK+ VWHTRT  P    E   
Sbjct: 186 QRSQAYFKLRGVKGGYQESSLLRELVTL-NDLEPKAANCTKILVWHTRTEKPVLVNE--- 241

Query: 120 QKNKKPASDRGIEV 133
              KK  +D  +E+
Sbjct: 242 --GKKGFTDPSVEI 253


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 1.0
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 14/61 (22%)

Query: 69  FD-VQKGYQESAILSKVL--SSAQELEPLAE---NCTKVYV-------W-HTRTTDPTFP 114
           F+ ++  YQ   +L   L   SA+ L  L     +  KV+        W    +  P   
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229

Query: 115 Y 115
           Y
Sbjct: 230 Y 230


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 1.9
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 24/99 (24%)

Query: 54  INLDLMKKNENVKFSFDVQKGYQESAILSKVLSSAQELEPL----------AENCTKVYV 103
           +  D    N + K   D+ K       +  ++ S   +              E   + +V
Sbjct: 24  VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 104 --------------WHTRTTDPTFPYEVVLQKNKKPASD 128
                           T    P+    + +++  +  +D
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122


>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus,
           mitosis, anaphase, cell cycle, CE division, spindle
           checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB:
           2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
          Length = 206

 Score = 26.2 bits (57), Expect = 3.7
 Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 52  FAINLDLMKKNENVKFSFDVQKGYQE-SAILSKVLSSAQELEPLAENCT-KVYVWHTRTT 109
           F I  D   K+++       +    E  +++ ++ ++   L  L  +C+  + ++  +  
Sbjct: 103 FDIESDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDL 162

Query: 110 DPTFPYE 116
                +E
Sbjct: 163 VVPEKWE 169


>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin,
           bluebell bulbs, carbohydrate interactions, sugar binding
           protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
          Length = 119

 Score = 24.9 bits (54), Expect = 8.0
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 103 VWHTRTTDPTFPYEVVLQKN 122
           VW +        Y +VLQ +
Sbjct: 83  VWQSPVAGKAGHYVLVLQPD 102


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0795    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,983,458
Number of extensions: 103415
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 21
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)