Query psy15111
Match_columns 93
No_of_seqs 105 out of 473
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 20:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0326 HtpG Molecular chapero 99.8 4E-21 8.6E-26 164.4 4.9 55 36-90 4-59 (623)
2 KOG0020|consensus 99.8 3.7E-20 8E-25 159.8 3.7 57 34-90 70-127 (785)
3 PTZ00130 heat shock protein 90 99.8 4.2E-20 9.1E-25 161.5 3.3 68 22-89 51-119 (814)
4 KOG0019|consensus 99.8 1.3E-19 2.9E-24 155.9 4.3 71 18-88 16-87 (656)
5 PTZ00272 heat shock protein 83 99.8 3.4E-19 7.4E-24 153.0 3.7 53 37-89 3-56 (701)
6 PRK05218 heat shock protein 90 99.6 1.1E-16 2.4E-21 134.3 4.4 53 36-88 3-56 (613)
7 PRK14083 HSP90 family protein; 99.4 3.5E-13 7.6E-18 114.0 3.8 43 38-80 2-45 (601)
8 PF13589 HATPase_c_3: Histidin 94.1 0.026 5.7E-07 38.5 1.4 18 57-75 1-18 (137)
9 PHA03057 Hypothetical protein; 33.9 23 0.00049 26.8 1.2 25 45-69 7-31 (146)
10 PF12552 DUF3741: Protein of u 33.6 24 0.00052 21.7 1.1 13 56-69 30-42 (46)
11 TIGR00585 mutl DNA mismatch re 33.2 19 0.00041 27.8 0.7 21 55-75 18-38 (312)
12 PF09748 Med10: Transcription 31.0 45 0.00098 23.4 2.2 25 47-73 67-91 (128)
13 PF02518 HATPase_c: Histidine 29.9 27 0.00058 21.7 0.9 13 63-75 9-21 (111)
14 PF10918 DUF2718: Protein of u 28.6 31 0.00068 25.9 1.2 15 45-59 7-21 (140)
15 PF03923 Lipoprotein_16: Uncha 25.5 83 0.0018 22.2 2.8 25 38-62 130-154 (159)
16 cd00075 HATPase_c Histidine ki 24.9 37 0.0008 19.0 0.8 14 63-76 4-17 (103)
17 PF06673 L_lactis_ph-MCP: Lact 24.4 42 0.0009 27.8 1.3 29 38-73 54-82 (347)
18 PRK04184 DNA topoisomerase VI 21.5 56 0.0012 28.5 1.5 14 62-75 39-52 (535)
19 PRK00095 mutL DNA mismatch rep 21.3 40 0.00088 29.0 0.6 20 56-75 19-38 (617)
20 cd08324 CARD_NOD1_CARD4 Caspas 20.1 1.5E+02 0.0033 20.5 3.2 37 41-78 44-81 (85)
21 cd05491 Bromo_TBP7_like Bromod 20.0 1.9E+02 0.0041 20.9 3.8 24 41-64 63-86 (119)
No 1
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4e-21 Score=164.39 Aligned_cols=55 Identities=51% Similarity=0.703 Sum_probs=52.0
Q ss_pred chhhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhhccCccchhhc
Q psy15111 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFTGNQTQDLWCR 90 (93)
Q Consensus 36 ~et~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~~~~~~~~~~~ 90 (93)
.+++.||+|++|||+||||||||||||||||||||||||| |+||.+.+++++.++
T Consensus 4 ~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~ 59 (623)
T COG0326 4 QETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEG 59 (623)
T ss_pred hhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCC
Confidence 4789999999999999999999999999999999999999 999999999988753
No 2
>KOG0020|consensus
Probab=99.79 E-value=3.7e-20 Score=159.77 Aligned_cols=57 Identities=49% Similarity=0.743 Sum_probs=53.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhhccCccchhhc
Q psy15111 34 DGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFTGNQTQDLWCR 90 (93)
Q Consensus 34 ~~~et~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~~~~~~~~~~~ 90 (93)
++++.|+||+|++++|.|||||||+||||||||||||||||| |+|++++++++.+.+
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~ 127 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGE 127 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCc
Confidence 356899999999999999999999999999999999999999 999999999987754
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.79 E-value=4.2e-20 Score=161.45 Aligned_cols=68 Identities=35% Similarity=0.655 Sum_probs=60.6
Q ss_pred ccccccCCCCCCCcchhhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhhccCccchhh
Q psy15111 22 NTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFTGNQTQDLWC 89 (93)
Q Consensus 22 ~~t~~~d~~~~~~~~et~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~~~~~~~~~~ 89 (93)
+-.-+.+++....+.++|+||+|+++||+||+|||||||+||||||||||+||| |+||++.+++.++.
T Consensus 51 ~~~~~~~~~~~~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~ 119 (814)
T PTZ00130 51 NIPEIEDGEKPTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLG 119 (814)
T ss_pred cCcccccCCCCCcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcC
Confidence 344456777777788999999999999999999999999999999999999999 99999999887654
No 4
>KOG0019|consensus
Probab=99.77 E-value=1.3e-19 Score=155.92 Aligned_cols=71 Identities=32% Similarity=0.496 Sum_probs=61.1
Q ss_pred hhhcccccccCCCCCCCcchhhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhhccCccchh
Q psy15111 18 RVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFTGNQTQDLW 88 (93)
Q Consensus 18 ~~~~~~t~~~d~~~~~~~~et~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~~~~~~~~~ 88 (93)
++.++.+-.-+.++.++..|+|+||+|++|||++++|++||||||||||||||||||| |+||.+.+++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~ 87 (656)
T KOG0019|consen 16 AMSLRAEPLFSTKMADEPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA 87 (656)
T ss_pred ccccccccccccccccccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc
Confidence 3444444455566777777999999999999999999999999999999999999999 9999999888664
No 5
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.75 E-value=3.4e-19 Score=152.98 Aligned_cols=53 Identities=68% Similarity=0.901 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhhccCccchhh
Q psy15111 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFTGNQTQDLWC 89 (93)
Q Consensus 37 et~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~~~~~~~~~~ 89 (93)
++|+||+|+++||+||+|||||||+||||||||||+||| |+||++.+++.+..
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~ 56 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLG 56 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcC
Confidence 689999999999999999999999999999999999999 99999998887653
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=99.64 E-value=1.1e-16 Score=134.29 Aligned_cols=53 Identities=53% Similarity=0.785 Sum_probs=49.1
Q ss_pred chhhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhhccCccchh
Q psy15111 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFTGNQTQDLW 88 (93)
Q Consensus 36 ~et~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~~~~~~~~~ 88 (93)
.|+++||+|+++||+||+++|||||+||||||||||+||| |+||.+.+++.+.
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~ 56 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY 56 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc
Confidence 4789999999999999999999999999999999999999 8999988776654
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=99.36 E-value=3.5e-13 Score=114.04 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhhhh
Q psy15111 38 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NIDFT 80 (93)
Q Consensus 38 t~~FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R~~ 80 (93)
.|+||+|+++||++++++||+||+||||||||||+||+ +.|+.
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~ 45 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRAL 45 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhcc
Confidence 48999999999999999999999999999999999999 66664
No 8
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=94.14 E-value=0.026 Score=38.53 Aligned_cols=18 Identities=61% Similarity=0.656 Sum_probs=15.8
Q ss_pred cCChhHHHHHHhhchhhhh
Q psy15111 57 YSNKEIFLRELISNSSDVQ 75 (93)
Q Consensus 57 YSnKEIFLRELISNASDAl 75 (93)
|++ +-.|+|||+||-||.
T Consensus 1 y~~-~~al~ElI~Ns~DA~ 18 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAG 18 (137)
T ss_dssp -SC-THHHHHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHHcc
Confidence 777 889999999999998
No 9
>PHA03057 Hypothetical protein; Provisional
Probab=33.85 E-value=23 Score=26.79 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhh
Q psy15111 45 IAQLMSLIINTFYSNKEIFLRELIS 69 (93)
Q Consensus 45 i~~LL~liinSLYSnKEIFLRELIS 69 (93)
+.||.++||.|+||----=+..|||
T Consensus 7 laRLcNliIyslYsllMyPmkklIs 31 (146)
T PHA03057 7 LARLCNLIIYSLYSLLMYPMKKLIS 31 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999743333344443
No 10
>PF12552 DUF3741: Protein of unknown function (DUF3741); InterPro: IPR022212 This domain family is found in eukaryotes, and is approximately 50 amino acids in length.
Probab=33.64 E-value=24 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=10.1
Q ss_pred hcCChhHHHHHHhh
Q psy15111 56 FYSNKEIFLRELIS 69 (93)
Q Consensus 56 LYSnKEIFLRELIS 69 (93)
|.||||.|| ++++
T Consensus 30 L~sNkdlfl-k~Lq 42 (46)
T PF12552_consen 30 LSSNKDLFL-KFLQ 42 (46)
T ss_pred HHhCHHHHH-HHHh
Confidence 478999999 5554
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.18 E-value=19 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=16.9
Q ss_pred hhcCChhHHHHHHhhchhhhh
Q psy15111 55 TFYSNKEIFLRELISNSSDVQ 75 (93)
Q Consensus 55 SLYSnKEIFLRELISNASDAl 75 (93)
....+..--++|||.||-||-
T Consensus 18 ~~i~~~~~~l~eLi~Na~dA~ 38 (312)
T TIGR00585 18 EVIERPASVVKELVENSLDAG 38 (312)
T ss_pred CchhhHHHHHHHHHHHHHHCC
Confidence 445667777899999999986
No 12
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.02 E-value=45 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHhhchhh
Q psy15111 47 QLMSLIINTFYSNKEIFLRELISNSSD 73 (93)
Q Consensus 47 ~LL~liinSLYSnKEIFLRELISNASD 73 (93)
.+++.|-+ ..||++|.||+|-.+..
T Consensus 67 evl~yID~--GrNPDiyTre~vE~~~~ 91 (128)
T PF09748_consen 67 EVLEYIDD--GRNPDIYTREFVELVRR 91 (128)
T ss_pred HHHHHHhC--CCCchHHHHHHHHHHHH
Confidence 35666666 69999999999976654
No 13
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=29.92 E-value=27 Score=21.72 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=10.9
Q ss_pred HHHHHhhchhhhh
Q psy15111 63 FLRELISNSSDVQ 75 (93)
Q Consensus 63 FLRELISNASDAl 75 (93)
-++||+.||.++-
T Consensus 9 il~~ll~Na~~~~ 21 (111)
T PF02518_consen 9 ILSELLDNAIKHS 21 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4679999999976
No 14
>PF10918 DUF2718: Protein of unknown function (DUF2718); InterPro: IPR020356 This entry contains proteins with no known function.
Probab=28.57 E-value=31 Score=25.93 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcCC
Q psy15111 45 IAQLMSLIINTFYSN 59 (93)
Q Consensus 45 i~~LL~liinSLYSn 59 (93)
+.||.+++|.|+||=
T Consensus 7 ~sRLcNLiIysiYsl 21 (140)
T PF10918_consen 7 LSRLCNLIIYSIYSL 21 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999974
No 15
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=25.46 E-value=83 Score=22.21 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCChhH
Q psy15111 38 TFAFQAEIAQLMSLIINTFYSNKEI 62 (93)
Q Consensus 38 t~~FQaei~~LL~liinSLYSnKEI 62 (93)
.-+++..++++++-+++.+|+|+|+
T Consensus 130 ~~~ie~~ln~~l~~~l~~i~~D~el 154 (159)
T PF03923_consen 130 NEEIEKALNKLLSDVLNDIANDPEL 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 4458888999999999999999986
No 16
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=24.92 E-value=37 Score=19.00 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHhhchhhhhh
Q psy15111 63 FLRELISNSSDVQN 76 (93)
Q Consensus 63 FLRELISNASDAlk 76 (93)
-++||+.||.++..
T Consensus 4 ~~~~ll~Na~~~~~ 17 (103)
T cd00075 4 VLLNLLSNAIKHTP 17 (103)
T ss_pred HHHHHHHHHHHhCc
Confidence 35799999988763
No 17
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=24.37 E-value=42 Score=27.81 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcCChhHHHHHHhhchhh
Q psy15111 38 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73 (93)
Q Consensus 38 t~~FQaei~~LL~liinSLYSnKEIFLRELISNASD 73 (93)
...|-.|+..-|--+ -..-||||+ .||||
T Consensus 54 erkfmrelgdkmtem------peqgflref-anasd 82 (347)
T PF06673_consen 54 ERKFMRELGDKMTEM------PEQGFLREF-ANASD 82 (347)
T ss_pred HHHHHHHHhHHHhhC------chhhHHHHh-ccccc
Confidence 355666654333221 234699997 58887
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=21.47 E-value=56 Score=28.52 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.1
Q ss_pred HHHHHHhhchhhhh
Q psy15111 62 IFLRELISNSSDVQ 75 (93)
Q Consensus 62 IFLRELISNASDAl 75 (93)
--++|||+||-||.
T Consensus 39 qVLkNLIeNAIDa~ 52 (535)
T PRK04184 39 TTVKELVDNSLDAC 52 (535)
T ss_pred HHHHHHHHHHHHHh
Confidence 34799999999998
No 19
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=21.31 E-value=40 Score=29.05 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.1
Q ss_pred hcCChhHHHHHHhhchhhhh
Q psy15111 56 FYSNKEIFLRELISNSSDVQ 75 (93)
Q Consensus 56 LYSnKEIFLRELISNASDAl 75 (93)
+-.++.--++|||.||-||=
T Consensus 19 vI~~~~svvkElveNsiDAg 38 (617)
T PRK00095 19 VVERPASVVKELVENALDAG 38 (617)
T ss_pred cccCHHHHHHHHHHHHHhCC
Confidence 34566677899999999985
No 20
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.11 E-value=1.5e+02 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHhhchhhhh-hhh
Q psy15111 41 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQ-NID 78 (93)
Q Consensus 41 FQaei~~LL~liinSLYSnKEIFLRELISNASDAl-k~R 78 (93)
=|..+++|++++.-.==.-|+.|+ +.+..+-||- .+|
T Consensus 44 ~qdkmRkLld~v~akG~~~k~~F~-~iL~e~~~~y~~~~ 81 (85)
T cd08324 44 QPDKVRKILDLVQSKGEEVSEYFL-YLLQQLADAYVDLR 81 (85)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHhhhhhh
Confidence 466789999997665556677887 7788888887 655
No 21
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=20.01 E-value=1.9e+02 Score=20.92 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHH
Q psy15111 41 FQAEIAQLMSLIINTFYSNKEIFL 64 (93)
Q Consensus 41 FQaei~~LL~liinSLYSnKEIFL 64 (93)
|--++.-+=.-+.+..|+.++-|+
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~ 86 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFL 86 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHH
Confidence 444444444555566666666665
Done!