RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15111
(93 letters)
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83);
Provisional.
Length = 701
Score = 76.3 bits (187), Expect = 6e-18
Identities = 35/37 (94%), Positives = 36/37 (97%)
Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
ETFAFQAEI QLMSLIINTFYSNKEIFLRELISN+SD
Sbjct: 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASD 39
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family
[Posttranslational modification, protein turnover,
chaperones].
Length = 623
Score = 73.5 bits (181), Expect = 8e-17
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
ET FQAE+ QL+ L+I++ YSNKEIFLRELISN+SD
Sbjct: 4 QETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASD 41
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 72.8 bits (180), Expect = 1e-16
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
+ET FQAE+ QL+ L+I++ YSNKEIFLRELISN+SD
Sbjct: 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASD 40
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 57.4 bits (138), Expect = 3e-11
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 16 IERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
+++ N + D + G+E +Q E+ +LM +I+N+ Y+ KE+FLRELISN++D
Sbjct: 45 VKKDRDNIPEIEDGEKPTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAAD 102
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional.
Length = 601
Score = 31.1 bits (71), Expect = 0.053
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 40 AFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
FQ ++ ++ L+ YS+ +++REL+ N+ D
Sbjct: 4 RFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVD 37
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 26.5 bits (58), Expect = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 3 DNQSSGDAITLGLIERVTKNTTLMAD 28
D +SGD I GL+ +T L+ D
Sbjct: 482 DMSASGDGIVAGLMRMLTVQPHLITD 507
>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 135
Score = 25.5 bits (56), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 14 GLIERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMS 50
GL E K T++AD +S ++ F A IA++ +
Sbjct: 66 GLAEVSEKGLTVLADVATSVADLDLAQFAATIAEMEA 102
>gnl|CDD|217953 pfam04190, DUF410, Protein of unknown function (DUF410). This
family of proteins is from Caenorhabditis elegans and
has no known function. The protein has some GO
references indicating that the protein has a positive
regulation of growth rate and is involved in nematode
larval development.
Length = 251
Score = 25.5 bits (56), Expect = 4.4
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 21 KNTTLMADNQSSGDGVE--TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQNID 78
L G +E F +A + L S+ + I + +
Sbjct: 123 AYFLLQEYWSFRGFEIEPDVFIVRAVLQYLCLKNFPFAVSSFTEYTAPFIKKHPKYEKYE 182
Query: 79 F 79
Sbjct: 183 A 183
>gnl|CDD|218588 pfam05427, FIBP, Acidic fibroblast growth factor binding (FIBP).
Acidic fibroblast growth factor (aFGF) intracellular
binding protein (FIBP) is a protein found mainly in the
nucleus that is thought to be involved in the
intracellular function of aFGF.
Length = 361
Score = 25.1 bits (55), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELI 68
+E FQ Q SL+I +YS + F REL+
Sbjct: 76 MEQLTFQIP-PQRRSLLIERYYSLDDAFARELL 107
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator
of transcription [Cell division and chromosome
partitioning / Transcription].
Length = 2005
Score = 25.4 bits (55), Expect = 6.9
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDVQNIDFTGNQTQD 86
E F FQ I SL+ NTF S S D ++D T D
Sbjct: 118 EDFHFQFSIGLTTSLLKNTFQSLLNQLSDPTQQQSIDKNDLDLLREGTTD 167
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain
in SMAD1, SMAD5 and SMAD9. The MH2 domain is located
at the C-terminus of the SMAD (small mothers against
decapentaplegic) family of proteins, which are signal
transducers and transcriptional modulators that mediate
multiple signaling pathways. The MH2 domain is
responsible for type I receptor interaction,
phosphorylation-triggered homo- and
hetero-oligomerization, and transactivation. It is
negatively regulated by the N-terminal MH1 domain,
which prevents it from forming a complex with SMAD4.
SMAD1, SMAD5 and SMAD9 (also known as SMAD8), are
receptor regulated SMADs (R-SMADs). SMAD1 plays an
essential role in bone development and postnatal bone
formation through activation by bone morphogenetic
protein (BMP) type 1 receptor kinase. SMAD5 is involved
in BMP signal modulation and may also play a role in
the pathway involving inhibition of hematopoietic
progenitor cells by TGF-beta. SMAD9 mediates the
differentiation of mesenchymal stem cells (MSCs) into
tendon-like cells by inhibiting the osteogenic pathway.
Length = 201
Score = 24.8 bits (54), Expect = 8.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 3 DNQSSGDAITLGLIERVTKNTTLMADNQSSGDGVETFAFQAEI 45
D ++ D LGL+ V +N+T+ + G GV + E+
Sbjct: 37 DPSNNSDRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEV 79
>gnl|CDD|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I,
catalytic domain; The PI3K catalytic domain family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. PI3Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 3-hydroxyl of the
inositol ring of D-myo-phosphatidylinositol (PtdIns) or
its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class I PI3Ks are the only enzymes
capable of converting PtdIns(4,5)P2 to the critical
second messenger PtdIns(3,4,5)P3. In vitro, they can
also phosphorylate the substrates PtdIns and PtdIns(4)P.
Class I enzymes are heterodimers and exist in multiple
isoforms consisting of one catalytic subunit (out of
four isoforms) and one of several regulatory subunits.
They are further classified into class IA (alpha, beta
and delta) and IB (gamma).
Length = 366
Score = 24.7 bits (54), Expect = 9.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 6 SSGDAITLGLIERVTKNTTLMADNQSSGDGVETFAFQAE 44
S+GD I GLIE V +TT+ + Q G T AF+ E
Sbjct: 142 STGDKI--GLIEVVRDSTTIA-NIQQETGGNATAAFKKE 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.352
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,368,940
Number of extensions: 343803
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 18
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)