RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15111
(93 letters)
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens}
SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 98.1 bits (245), Expect = 6e-27
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 4 NQSSGDAITLGLIERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIF 63
+ + G + L + K+ +D + VETFAFQAEIAQLMSLIINTFYSNKEIF
Sbjct: 14 SMTGGQQMGRDLYDDDDKDRWG-SDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIF 72
Query: 64 LRELISNSSD 73
LRELISNSSD
Sbjct: 73 LRELISNSSD 82
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 96.9 bits (242), Expect = 1e-26
Identities = 41/53 (77%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Query: 22 NTTLMADNQSSGD-GVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
+ TLM + G+ VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SD
Sbjct: 1 DPTLMPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASD 53
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 95.3 bits (238), Expect = 4e-26
Identities = 39/46 (84%), Positives = 40/46 (86%)
Query: 28 DNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
D + VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD
Sbjct: 1 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 46
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 95.0 bits (237), Expect = 8e-26
Identities = 40/57 (70%), Positives = 41/57 (71%)
Query: 17 ERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
T D + VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD
Sbjct: 18 GSHMPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 74
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB:
3pej_A*
Length = 281
Score = 95.0 bits (237), Expect = 1e-25
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 30 QSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
Q + +E+ +Q E+ +LM +I+N+ Y+ KE+FLRELISN++D
Sbjct: 17 QGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAAD 60
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A
{Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A*
1qye_A* 1u0y_A* 1yt2_A*
Length = 269
Score = 95.0 bits (237), Expect = 1e-25
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SD
Sbjct: 5 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASD 42
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 93.3 bits (233), Expect = 1e-25
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
ETF FQAEI QLMSLIINT YSNKEIFLRE++SN+SD
Sbjct: 4 ETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASD 40
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A*
1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A*
2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 93.8 bits (234), Expect = 2e-25
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 29 NQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
+ + E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SD
Sbjct: 2 SHMLREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASD 46
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex,
HSP90, heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 96.0 bits (239), Expect = 6e-25
Identities = 33/37 (89%), Positives = 34/37 (91%)
Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
ETF FQAEI QLMSLIINT YSNKEIFLRELISN+SD
Sbjct: 4 ETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASD 40
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 95.4 bits (238), Expect = 8e-25
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 13 LGLIERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSS 72
+G +++ + S E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHM--SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNAS 58
Query: 73 D 73
D
Sbjct: 59 D 59
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP;
1.65A {Escherichia coli}
Length = 235
Score = 91.1 bits (227), Expect = 2e-24
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 13 LGLIERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSS 72
+G +++ + S G ET FQ+E+ QL+ L+I++ YSNKEIFLRELISN+S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNAS 60
Query: 73 D 73
D
Sbjct: 61 D 61
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 88.4 bits (220), Expect = 2e-22
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
ET FQ+E+ QL+ L+I++ YSNKEIFLRELISN+SD
Sbjct: 5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASD 41
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 88.0 bits (219), Expect = 3e-22
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
ET FQ+E+ QL+ L+I++ YSNKEIFLRELISN+SD
Sbjct: 5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASD 41
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 67.6 bits (165), Expect = 3e-15
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 13 LGLIERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSS 72
+G +++ + G VE + F+AE+ ++M +I+N+ Y++K++FLRELISN+S
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNAS 60
Query: 73 D 73
D
Sbjct: 61 D 61
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.009
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 20 TKNTTLMADNQSSGDGVE-----TFAFQAEIAQ----LMS 50
T+ T LM+ N +G+E TF+ Q E+A L++
Sbjct: 673 TRGTGLMSANNIIAEGIEKMGVRTFS-QKEMAFNLLGLLT 711
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.011
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 27/97 (27%)
Query: 11 ITLG-------LIERVTK-NTTLMADNQSSGDGVETFAFQAEIAQ--LMSLIINTFYSNK 60
+ L ++E + K + + S D + Q L L+ + Y N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 61 EIFLRELISNSSDVQN---ID-FTGNQTQDLWCRSLV 93
+ L +VQN + F +L C+ L+
Sbjct: 247 LLVLL-------NVQNAKAWNAF------NLSCKILL 270
Score = 27.9 bits (61), Expect = 0.47
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 15 LIERVTKNTTLMADNQSSGDGVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDV 74
L + +N L+ N + F +I L+ T K++ + ++ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-----LLT-T--RFKQVTDFLSAATTTHI 289
Query: 75 QNID----FTGNQTQDL 87
T ++ + L
Sbjct: 290 SLDHHSMTLTPDEVKSL 306
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
binding site AN site being FAR from EACH other,
structural genomics, PSI; HET: GDP; 2.00A {Aquifex
aeolicus} SCOP: a.211.1.1
Length = 371
Score = 31.0 bits (70), Expect = 0.032
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 44 EIAQLMSLIINTFYSNKEIFLRELISNSSDVQNIDFT 80
+I +L+ + + +E L E+I+ +D+
Sbjct: 130 DIERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYL 166
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG,
structural genomics, protein struc initiative, PSI;
1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Length = 355
Score = 24.9 bits (54), Expect = 4.6
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 63 FLRELISNSSDVQNIDFTGNQTQDLWCR 90
L+E + I F T D WCR
Sbjct: 69 LLKERDPEGKYAERIVFHRIPTNDAWCR 96
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 24.5 bits (53), Expect = 6.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 20 TKNTTLMADNQSSGDGVE-----TFAFQAEIAQLM 49
T+ T LM+ N +G+E TF+ Q E+A +
Sbjct: 872 TRGTGLMSANNIIAEGIEKMGVRTFS-QKEMAFNL 905
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 24.5 bits (53), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 20 TKNTTLMADNQSSGDGVE-----TFAFQAEIAQLM 49
T+ T LM+ N +GVE TF+ Q E+A +
Sbjct: 847 TRGTGLMSANNLVAEGVEKLGVRTFS-QQEMAFNL 880
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.352
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,252,196
Number of extensions: 59173
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 24
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)