RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15111
         (93 letters)



>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris)
          [TaxId: 9615]}
          Length = 227

 Score = 79.7 bits (196), Expect = 2e-20
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
          E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SD
Sbjct: 1  EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASD 37


>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 208

 Score = 77.8 bits (191), Expect = 5e-20
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 36 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
          VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD
Sbjct: 1  VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 38


>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 213

 Score = 77.8 bits (191), Expect = 6e-20
 Identities = 33/37 (89%), Positives = 34/37 (91%)

Query: 37 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 73
          ETF FQAEI QLMSLIINT YSNKEIFLRELISN+SD
Sbjct: 3  ETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASD 39


>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
          aldolase/transaldolase {Thermus thermophilus [TaxId:
          274]}
          Length = 211

 Score = 23.6 bits (50), Expect = 4.9
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 9  DAITLGLIERVTKNTTLMA-DNQSSGDGVETFAFQAEIAQLMSLIINTFY 57
          +    G++  VT N TL+A    + G+ +   AF A +  +   +     
Sbjct: 15 EIAAWGVLSGVTTNPTLVAKAFAAKGEALTEEAFAAHLRAICETVGGPVS 64


>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase
          {Helicobacter pylori J99 [TaxId: 85963]}
          Length = 330

 Score = 23.5 bits (50), Expect = 5.8
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 8/54 (14%)

Query: 42 QAEIAQLMSLI-----INTFYSNKEIFLRELISNSSDVQNIDFTGNQTQDLWCR 90
          +     ++  I     +       +    E++ N      ++     T D W R
Sbjct: 33 RESFLNIIQTIAKHAKVLVCVHTNDTIGYEMLKNLP---GVEIAKVDTNDTWAR 83


>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
          aldolase/transaldolase {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 22.8 bits (48), Expect = 9.2
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 2  ADNQSSGDAITLGLIERVTKNTTLMADNQSSGDGVETFAFQ 42
          +D  +      +  +  VT N +++A   +    ++    Q
Sbjct: 8  SDVVAVKALSRIFPLAGVTTNPSIIA---AGKKPLDVVLPQ 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 294,260
Number of extensions: 10071
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)