BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15112
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
 pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
 pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
 pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
 pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
 pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
 pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
 pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
 pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
          Length = 448

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 25  HAARIHRMIKLGLGIEDDDEPA-PSEEVKSEELPAADADTEDASRMEEVD 73
           HA RI+RMIKLGLGI++DD  A  +    +EE+P  + D +D SRMEEVD
Sbjct: 394 HANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGD-DDTSRMEEVD 442


>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
 pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
          Length = 257

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 39  IEDDDEPAPSEEVKSEELPAADADTEDAS 67
           I   ++  PSEE+KSE L A   + ED S
Sbjct: 159 IAKQEKYEPSEEIKSEVLEAVTEEPEDIS 187


>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
           Bound To Ssrna And Amp-Pnp
          Length = 512

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 39  IEDDDEPAPSEEVKSEELPAADADTEDAS 67
           I   ++  PSEE+KSE L A   + ED S
Sbjct: 414 IAKQEKYEPSEEIKSEVLEAVTEEPEDIS 442


>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
           Rna-Dna Duplex
 pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
           Rna-Dna Duplex
          Length = 256

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 39  IEDDDEPAPSEEVKSEELPAADADTEDAS 67
           I   ++  PSEE+KSE L A   + ED S
Sbjct: 159 IAKQEKYEPSEEIKSEVLEAVTEEPEDIS 187


>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
 pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
          Length = 257

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 39  IEDDDEPAPSEEVKSEELPAADADTEDAS 67
           I   ++  PSEE+KSE L A   + ED S
Sbjct: 159 IAKQEKYEPSEEIKSEVLEAVTEEPEDIS 187


>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
           Amp-Pnp
          Length = 579

 Score = 25.0 bits (53), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 39  IEDDDEPAPSEEVKSEELPAADADTEDAS 67
           I   ++  PSEE+KSE L A   + ED S
Sbjct: 414 IAKQEKYEPSEEIKSEVLEAVTEEPEDIS 442


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.131    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,160,665
Number of Sequences: 62578
Number of extensions: 74371
Number of successful extensions: 118
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 8
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)